------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 28 sequences from file RIBOSOMAL_L23 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 28 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L23.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL23_ARATH 93 RL23_ASTLO 98 RL23_BACST 95 RL23_BACSU 95 RL23_ECOLI 100 RL23_EUGGR 100 RL23_HAEIN 99 RL23_HALHA 84 RL23_HALMA 84 RL23_MAIZE 93 RL23_MARPO 91 RL23_METVA 86 RL23_MYCCA 94 RL23_ORYSA 93 RL23_SINAL 93 RL23_SPIOL 90 RL23_THEMA 100 RL23_TOBAC 93 RL23_WHEAT 93 RL23_YEREN 100 RL23_YERPS 100 RL25_PICJA 142 RL25_TOBAC 154 RL25_TRYBB 164 RL25_YEAST 136 RL2B_HUMAN 156 RL2B_RAT 156 RM41_YEAST 263 Pratt run started at Thu Feb 6 21:05:51 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 8.3401 46( 28) K-x(4)-L 2: 7.8401 102( 28) K-x(2,3)-V 3: 7.8401 56( 28) T-x(4,5)-K 4: 7.8401 57( 28) T-x(3,4)-K 5: 7.8401 41( 28) V-x(1,2)-T 6: 7.8401 43( 28) V-x(0,1)-T 7: 7.8401 66( 28) V-x(2,3)-K 8: 7.3401 72( 28) K-x(3,5)-E 9: 7.3401 48( 28) V-x(1,3)-T 10: 7.3401 75( 28) K-x(1,3)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 10.5420 36( 28) K-[AEST]-x(3)-L B 2: 8.7729 48( 28) K-x(1,3)-E-x(3)-[AEGNQST] C 3: 7.8401 102( 28) K-x(2,3)-V D 4: 7.8401 56( 28) T-x(4,5)-K E 5: 7.8401 57( 28) T-x(3,4)-K F 6: 7.8401 41( 28) V-x(1,2)-T G 7: 7.8401 43( 28) V-x(0,1)-T H 8: 7.8401 66( 28) V-x(2,3)-K I 9: 7.3401 72( 28) K-x(3,5)-E J 10: 7.3401 48( 28) V-x(1,3)-T Best patterns with alignements: fitness hits(seqs) Pattern A 1: 10.5420 36( 28) K-[AEST]-x(3)-L Occurences: 36(28) RL23_ARATH : 12- 17: avftd KSirlL gknqy RL23_ASTLO : 20- 25: qvftd KTndlL kyniy RL23_BACST : 78- 83: tnrrk KAivtL tpdsk RL23_BACSU : 78- 83: tsrrr KAivkL tadsk RL23_ECOLI : 82- 87: rsdwk KAyvtL kegqn RL23_ECOLI : 88- 93: ayvtl KEgqnL dfvgg RL23_EUGGR : 21- 26: giltd KTnklL knnvy RL23_HAEIN : 81- 86: rsdwk KAyvtL aegqn RL23_HALHA : 63- 68: peaek KAtvkL saedd RL23_HALMA : 63- 68: mdgek KAvvrL seddd RL23_MAIZE : 12- 17: avfte KSlrlL gknqy RL23_MARPO : 12- 17: pvlte KTirlL eknqy RL23_METVA : 65- 70: pkgqk KAyikL kdeyn RL23_MYCCA : 77- 82: kpsyk KAiitL kegqk RL23_MYCCA : 83- 88: aiitl KEgqkL dvlsd RL23_ORYSA : 12- 17: avfte KSlrlL gknqy RL23_SINAL : 12- 17: avftd KSiwlL gknqy RL23_SPIOL : 12- 17: avftd KSiqlL gkkqy RL23_THEMA : 82- 87: trswk KAvvtL kegyt RL23_TOBAC : 12- 17: avftd KSirlL gknqy RL23_WHEAT : 12- 17: avfte KSlrlL gknqy RL23_YEREN : 82- 87: rsdwk KAyvtL kegqn RL23_YEREN : 88- 93: ayvtl KEgqnL dfigg RL23_YERPS : 82- 87: rsdwk KAyvtL kegqn RL23_YERPS : 88- 93: ayvtl KEgqnL dfigg RL25_PICJA : 121- 126: pngtk KAyvrL tadhd RL25_TOBAC : 26- 31: vakav KSgstL kkksq RL25_TOBAC : 133- 138: pdgtk KAyvrL tpdyd RL25_TRYBB : 119- 124: kteik KAirkL yqvkt RL25_TRYBB : 143- 148: pdglk KAyirL sasyd RL25_YEAST : 96- 101: kyqik KAvkeL yevni RL25_YEAST : 115- 120: pngtk KAyvrL tadyd RL2B_HUMAN : 135- 140: pdgek KAyvrL apdyd RL2B_RAT : 135- 140: pdgek KAyvrL apdyd RM41_YEAST : 88- 93: kvyfp KAriiL lrpna RM41_YEAST : 111- 116: kfivp KSfnkL dlrdy B 2: 8.7729 48( 28) K-x(1,3)-E-x(3)-[AEGNQST] Occurences: 48(28) RL23_ARATH : 36- 44: trtei KhwvElffG vmvia RL23_ASTLO : 44- 52: nklqi KniiEyifN ikiys RL23_BACST : 36- 42: dvkan Kt--EvkdA vekif RL23_BACST : 40- 48: nktev KdavEkifG vkvek RL23_BACSU : 36- 42: dvran Kt--EakdA vesif RL23_BACSU : 40- 48: nktea KdavEsifG vkvdk RL23_BACSU : 88- 95: ltads Kei-EifeA RL23_ECOLI : 40- 46: akdat Ka--EikaA vqklf RL23_ECOLI : 49- 56: kaavq Klf-EvevE vvntl RL23_EUGGR : 45- 53: skrqf KdliEtafS vkits RL23_HAEIN : 39- 45: aldan Ka--EiaaA vaqlf RL23_HALHA : 13- 21: plvte KamdEmdfQ nklqf RL23_HALHA : 67- 75: kkatv KlsaEddaQ dvasr RL23_HALMA : 34- 40: ddras Kg--EvadA veeqy RL23_MAIZE : 36- 44: tktei KhwvElffG vkvva RL23_MARPO : 36- 44: nktqi KkwiElffN vkvis RL23_MARPO : 37- 44: ktqik Kwi-ElffN vkvis RL23_METVA : 33- 41: fyver KatkEdikE aikql RL23_METVA : 69- 77: kkayi KlkdEynaG evaas RL23_METVA : 71- 77: ayikl Kd--EynaG evaas RL23_MYCCA : 39- 47: nkvqi KktfEeifE vkves RL23_MYCCA : 40- 47: kvqik Ktf-EeifE vkves RL23_MYCCA : 49- 55: eifev Kv--EsvrT inyda RL23_ORYSA : 36- 44: tktei KhwvElffG vkvva RL23_SINAL : 36- 44: trtei KhwvElffG vkvia RL23_SPIOL : 36- 44: trtei KhwvElwnS yemns RL23_THEMA : 44- 52: nknlv KeavEklfN vkvek RL23_TOBAC : 36- 44: trtei KhwvElffG vkvia RL23_WHEAT : 36- 44: tktei KhwvElffG vkvva RL23_YEREN : 40- 46: akdat Ka--EikaA vqklf RL23_YEREN : 49- 56: kaavq Klf-EvevE dvntl RL23_YERPS : 40- 46: akdat Ka--EikaA vqklf RL23_YERPS : 49- 56: kaavq Klf-EvevE dvntl RL25_PICJA : 74- 81: setam Kkv-EdgnT lvfqv RL25_PICJA : 75- 81: etamk Kv--EdgnT lvfqv RL25_TOBAC : 86- 93: tesam Kki-EdnnT lvfiv RL25_TOBAC : 87- 93: esamk Ki--EdnnT lvfiv RL25_TRYBB : 96- 103: tdkam Kki-EennT ltfiv RL25_TRYBB : 97- 103: dkamk Ki--EennT ltfiv RL25_TRYBB : 114- 120: dsran Kt--EikkA irkly RL25_YEAST : 60- 67: rldsy Kvi-EqpiT setam RL2B_HUMAN : 88- 95: tesam Kki-EdnnT lvfiv RL2B_HUMAN : 89- 95: esamk Ki--EdnnT lvfiv RL2B_RAT : 88- 95: tesam Kki-EdnnT lvfiv RL2B_RAT : 89- 95: esamk Ki--EdnnT lvfiv RM41_YEAST : 67- 75: iykwt KagiEqgkE hfkvg RM41_YEAST : 192- 199: pdnme Kyr-EerlN clgsd RM41_YEAST : 238- 244: reidn Kr--ErhaA elqra C 3: 7.8401 102( 28) K-x(2,3)-V Occurences: 102(28) RL23_ARATH : 5- 8: mdgi Kya-V ftdks RL23_ARATH : 36- 39: trtei Khw-V elffg RL23_ASTLO : 13- 16: flpfl Kyq-V ftdkt RL23_BACST : 36- 39: dvkan Kte-V kdave RL23_BACST : 40- 43: nktev Kda-V ekifg RL23_BACST : 45- 49: kdave KifgV kvekv RL23_BACST : 50- 54: kifgv KvekV nimny RL23_BACST : 62- 66: mnykg KfkrV grysg RL23_BACST : 77- 81: ytnrr KkaiV tltpd RL23_BACST : 78- 81: tnrrk Kai-V tltpd RL23_BACSU : 9- 12: prdvl Krp-V iters RL23_BACSU : 40- 43: nktea Kda-V esifg RL23_BACSU : 50- 54: sifgv KvdkV nimny RL23_BACSU : 62- 66: mnykg KskrV grytg RL23_BACSU : 78- 81: tsrrr Kai-V kltad RL23_ECOLI : 44- 47: tkaei Kaa-V qklfe RL23_ECOLI : 49- 53: kaavq KlfeV evevv RL23_ECOLI : 64- 67: ntlvv Kgk-V krhgq RL23_ECOLI : 81- 85: rrsdw KkayV tlkeg RL23_ECOLI : 82- 85: rsdwk Kay-V tlkeg RL23_EUGGR : 27- 30: tnkll Knn-V ytfdv RL23_EUGGR : 55- 59: tafsv KitsV nsyvk RL23_HAEIN : 25- 29: tnnae KsntV vlkva RL23_HAEIN : 53- 57: qlfev KvdsV rtvvv RL23_HAEIN : 80- 84: rrsdw KkayV tlaeg RL23_HAEIN : 81- 84: rsdwk Kay-V tlaeg RL23_HALHA : 62- 66: tpeae KkatV klsae RL23_HALHA : 63- 66: peaek Kat-V klsae RL23_HALMA : 6- 10: swdvi KhphV tekam RL23_HALMA : 34- 37: ddras Kge-V adave RL23_HALMA : 62- 65: tmdge Kka-V vrlse RL23_HALMA : 62- 66: tmdge KkavV rlsed RL23_HALMA : 63- 66: mdgek Kav-V rlsed RL23_MAIZE : 5- 8: mdgi Kya-V fteks RL23_MAIZE : 36- 39: tktei Khw-V elffg RL23_MAIZE : 46- 50: lffgv KvvaV nshrl RL23_MARPO : 5- 8: mnqv Kyp-V ltekt RL23_MARPO : 46- 50: lffnv KvisV nshrl RL23_METVA : 8- 12: afdvi KtpiV sektm RL23_MYCCA : 8- 11: itevl Kkp-V lteks RL23_MYCCA : 21- 24: sfagh Kdn-V ytflv RL23_MYCCA : 32- 36: flvdk KankV qikkt RL23_MYCCA : 49- 53: eifev KvesV rtiny RL23_MYCCA : 87- 90: lkegq Kld-V lsdl RL23_ORYSA : 5- 8: mdgi Kya-V fteks RL23_ORYSA : 36- 39: tktei Khw-V elffg RL23_ORYSA : 46- 50: lffgv KvvaV nshrl RL23_SINAL : 5- 8: mdgi Kya-V ftdks RL23_SINAL : 36- 39: trtei Khw-V elffg RL23_SPIOL : 5- 8: mdgi Kya-V ftdks RL23_SPIOL : 36- 39: trtei Khw-V elwns RL23_THEMA : 40- 43: nplan Knl-V keave RL23_THEMA : 44- 47: nknlv Kea-V eklfn RL23_THEMA : 49- 53: keave KlfnV kvekv RL23_THEMA : 54- 58: klfnv KvekV nilnm RL23_THEMA : 81- 84: ktrsw Kka-V vtlke RL23_THEMA : 81- 85: ktrsw KkavV tlkeg RL23_THEMA : 82- 85: trswk Kav-V tlkeg RL23_TOBAC : 5- 8: mdgi Kya-V ftdks RL23_TOBAC : 36- 39: trtei Khw-V elffg RL23_WHEAT : 5- 8: mdgi Kya-V fteks RL23_WHEAT : 36- 39: tktei Khw-V elffg RL23_WHEAT : 46- 50: lffgv KvvaV nshrl RL23_YEREN : 44- 47: tkaei Kaa-V qklfe RL23_YEREN : 49- 53: kaavq KlfeV evedv RL23_YEREN : 81- 85: rrsdw KkayV tlkeg RL23_YEREN : 82- 85: rsdwk Kay-V tlkeg RL23_YERPS : 44- 47: tkaei Kaa-V qklfe RL23_YERPS : 49- 53: kaavq KlfeV evedv RL23_YERPS : 81- 85: rrsdw KkayV tlkeg RL23_YERPS : 82- 85: rsdwk Kay-V tlkeg RL25_PICJA : 11- 14: kaasa Kka-V vkgsn RL25_PICJA : 11- 15: kaasa KkavV kgsng RL25_PICJA : 12- 15: aasak Kav-V kgsng RL25_PICJA : 22- 26: gsngs KalkV rtstt RL25_PICJA : 61- 64: rldny Kvi-V apias RL25_PICJA : 96- 99: nkhqi Kqa-V kdlye RL25_PICJA : 120- 124: rpngt KkayV rltad RL25_PICJA : 121- 124: pngtk Kay-V rltad RL25_TOBAC : 108- 111: dkkki Kda-V kkmyd RL25_TOBAC : 132- 136: rpdgt KkayV rltpd RL25_TOBAC : 133- 136: pdgtk Kay-V rltpd RL25_TRYBB : 18- 21: knsap Ksa-V skkva RL25_TRYBB : 36- 40: paaaa KptkV vkvtk RL25_TRYBB : 39- 43: aakpt KvvkV tkrka RL25_TRYBB : 123- 127: kkair KlyqV ktvkv RL25_TRYBB : 128- 132: klyqv KtvkV ntlir RL25_TRYBB : 160- 164: ldtan KmglV RL25_YEAST : 10- 13: kataa Kka-V vkgtn RL25_YEAST : 10- 14: kataa KkavV kgtng RL25_YEAST : 11- 14: ataak Kav-V kgtng RL25_YEAST : 21- 25: gtngk KalkV rtsat RL25_YEAST : 95- 98: nkyqi Kka-V kelye RL25_YEAST : 114- 118: rpngt KkayV rltad RL25_YEAST : 115- 118: pngtk Kay-V rltad RL2B_HUMAN : 25- 28: kalka Kka-V lkgvh RL2B_HUMAN : 110- 113: nkhqi Kqa-V kklyd RL2B_HUMAN : 134- 138: rpdge KkayV rlapd RL2B_HUMAN : 135- 138: pdgek Kay-V rlapd RL2B_RAT : 25- 28: kalka Kka-V lkgvh RL2B_RAT : 110- 113: nkhqi Kqa-V kklyd RL2B_RAT : 134- 138: rpdge KkayV rlapd RL2B_RAT : 135- 138: pdgek Kay-V rlapd RM41_YEAST : 17- 21: lyplq KtlaV gsckp RM41_YEAST : 25- 29: avgsc KpeqV pirsl RM41_YEAST : 106- 109: tpyqa Kfi-V pksfn D 4: 7.8401 56( 28) T-x(4,5)-K Occurences: 56(28) RL23_ARATH : 31- 36: vesgs Trtei-K hwvel RL23_ASTLO : 21- 26: vftdk Tndll-K yniyv RL23_ASTLO : 60- 66: iysin TyiknnK yccfn RL23_BACST : 27- 33: gqkky TfevdvK ankte RL23_BACST : 73- 78: rysgy Tnrrk-K aivtl RL23_BACST : 82- 88: kkaiv TltpdsK eielf RL23_BACSU : 73- 78: rytgm Tsrrr-K aivkl RL23_ECOLI : 39- 44: vakda Tkaei-K aavqk RL23_ECOLI : 60- 66: vevvn TlvvkgK vkrhg RL23_EUGGR : 19- 24: kygil Tdktn-K llknn RL23_EUGGR : 22- 27: iltdk Tnkll-K nnvyt RL23_EUGGR : 50- 55: kdlie Tafsv-K itsvn RL23_HAEIN : 20- 25: iseka Tnnae-K sntvv RL23_HAEIN : 59- 65: vdsvr TvvvkgK tkrrg RL23_HAEIN : 66- 72: vvkgk TkrrgnK mgrrs RL23_HALHA : 57- 62: vntqi Tpeae-K katvk RL23_HALHA : 57- 63: vntqi TpeaekK atvkl RL23_HALMA : 57- 62: vntqn Tmdge-K kavvr RL23_HALMA : 57- 63: vntqn TmdgekK avvrl RL23_MAIZE : 31- 36: vesgf Tktei-K hwvel RL23_MARPO : 13- 19: vltek TirlleK nqysf RL23_METVA : 9- 15: fdvik TpivseK tmkli RL23_METVA : 35- 40: verka Tkedi-K eaikq RL23_METVA : 56- 61: vaevn Tnitp-K gqkka RL23_METVA : 59- 64: vntni Tpkgq-K kayik RL23_METVA : 59- 65: vntni TpkgqkK ayikl RL23_MYCCA : 4- 9: mhi Tevlk-K pvlte RL23_MYCCA : 26- 31: kdnvy Tflvd-K kankv RL23_MYCCA : 26- 32: kdnvy TflvdkK ankvq RL23_MYCCA : 55- 61: vesvr TinydaK ekrlg RL23_MYCCA : 81- 87: kkaii TlkegqK ldvls RL23_ORYSA : 31- 36: vesgf Tktei-K hwvel RL23_SINAL : 31- 36: vesgs Trtei-K hwvel RL23_SPIOL : 31- 36: vesrs Trtei-K hwvel RL23_THEMA : 77- 82: ifegk Trswk-K avvtl RL23_TOBAC : 31- 36: vesgs Trtei-K hwvel RL23_WHEAT : 31- 36: vesgf Tktei-K hwvel RL23_YEREN : 39- 44: vakda Tkaei-K aavqk RL23_YEREN : 60- 66: vedvn TllvkgK skrhg RL23_YERPS : 39- 44: vakda Tkaei-K aavqk RL23_YERPS : 60- 66: vedvn TllvkgK skrhg RL25_PICJA : 5- 11: maps TkaasaK kavvk RL25_PICJA : 30- 36: kvrts TtfrlpK tlklt RL25_PICJA : 31- 36: vrtst Tfrlp-K tlklt RL25_TOBAC : 43- 48: irtkv Tfhrp-K tlkkd RL25_TOBAC : 80- 86: lkypl TtesamK kiedn RL25_TOBAC : 81- 86: kyplt Tesam-K kiedn RL25_TOBAC : 81- 87: kyplt TesamkK iednn RL25_TRYBB : 90- 96: irypl TtdkamK kieen RL25_TRYBB : 91- 96: ryplt Tdkam-K kieen RL25_TRYBB : 91- 97: ryplt TdkamkK ieenn RL25_YEAST : 30- 35: vrtsa Tfrlp-K tlkla RL25_YEAST : 67- 73: ieqpi TsetamK kvedg RL2B_HUMAN : 45- 50: irtsp Tfrrp-K tlrlr RL2B_HUMAN : 82- 88: ikfpl TtesamK kiedn RL2B_HUMAN : 83- 88: kfplt Tesam-K kiedn RL2B_HUMAN : 83- 89: kfplt TesamkK iednn RL2B_RAT : 45- 50: irtsp Tfrrp-K tlrlr RL2B_RAT : 82- 88: ikfpl TtesamK kiedn RL2B_RAT : 83- 88: kfplt Tesam-K kiedn RL2B_RAT : 83- 89: kfplt TesamkK iednn RM41_YEAST : 101- 106: pnakh Tpyqa-K fivpk RM41_YEAST : 135- 141: amnit TqllhgK fnrmn RM41_YEAST : 186- 192: fwdst TpdnmeK yreer E 5: 7.8401 57( 28) T-x(3,4)-K Occurences: 57(28) RL23_ARATH : 31- 36: vesgs TrteiK hwvel RL23_ASTLO : 21- 26: vftdk TndllK yniyv RL23_BACST : 73- 77: rysgy Tnrr-K kaivt RL23_BACST : 73- 78: rysgy TnrrkK aivtl RL23_BACST : 84- 88: aivtl Tpds-K eielf RL23_BACSU : 73- 78: rytgm TsrrrK aivkl RL23_BACSU : 84- 88: aivkl Tads-K eieif RL23_ECOLI : 22- 26: sekas Tame-K sntiv RL23_ECOLI : 29- 33: meksn Tivl-K vakda RL23_ECOLI : 39- 44: vakda TkaeiK aavqk RL23_ECOLI : 60- 64: vevvn Tlvv-K gkvkr RL23_EUGGR : 19- 24: kygil TdktnK llknn RL23_EUGGR : 22- 27: iltdk TnkllK nnvyt RL23_EUGGR : 50- 55: kdlie TafsvK itsvn RL23_HAEIN : 20- 25: iseka TnnaeK sntvv RL23_HAEIN : 28- 32: aeksn Tvvl-K valda RL23_HAEIN : 59- 63: vdsvr Tvvv-K gktkr RL23_HALHA : 57- 62: vntqi TpeaeK katvk RL23_HALMA : 57- 62: vntqn TmdgeK kavvr RL23_MAIZE : 31- 36: vesgf TkteiK hwvel RL23_MARPO : 33- 37: idsnk Tqik-K wielf RL23_MARPO : 69- 73: tttgy Tvry-K rmiik RL23_METVA : 35- 40: verka TkediK eaikq RL23_METVA : 56- 61: vaevn TnitpK gqkka RL23_METVA : 59- 64: vntni TpkgqK kayik RL23_MYCCA : 4- 8: mhi Tevl-K kpvlt RL23_MYCCA : 4- 9: mhi TevlkK pvlte RL23_MYCCA : 26- 31: kdnvy TflvdK kankv RL23_ORYSA : 31- 36: vesgf TkteiK hwvel RL23_SINAL : 31- 36: vesgs TrteiK hwvel RL23_SPIOL : 31- 36: vesrs TrteiK hwvel RL23_THEMA : 77- 81: ifegk Trsw-K kavvt RL23_THEMA : 77- 82: ifegk TrswkK avvtl RL23_TOBAC : 31- 36: vesgs TrteiK hwvel RL23_WHEAT : 31- 36: vesgf TkteiK hwvel RL23_YEREN : 29- 33: meknn Tivl-K vakda RL23_YEREN : 39- 44: vakda TkaeiK aavqk RL23_YEREN : 60- 64: vedvn Tllv-K gkskr RL23_YERPS : 29- 33: meknn Tivl-K vakda RL23_YERPS : 39- 44: vakda TkaeiK aavqk RL23_YERPS : 60- 64: vedvn Tllv-K gkskr RL25_PICJA : 31- 36: vrtst TfrlpK tlklt RL25_PICJA : 41- 45: ktlkl Trap-K yarka RL25_PICJA : 71- 75: piase Tamk-K vedgn RL25_TOBAC : 30- 34: vksgs Tlkk-K sqkir RL25_TOBAC : 43- 48: irtkv TfhrpK tlkkd RL25_TOBAC : 81- 86: kyplt TesamK kiedn RL25_TRYBB : 38- 42: aaakp Tkvv-K vtkrk RL25_TRYBB : 91- 96: ryplt TdkamK kieen RL25_TRYBB : 115- 119: srank Teik-K airkl RL25_YEAST : 7- 11: psaka Taak-K avvkg RL25_YEAST : 17- 21: avvkg Tngk-K alkvr RL25_YEAST : 30- 35: vrtsa TfrlpK tlkla RL25_YEAST : 70- 74: pitse Tamk-K vedgn RL2B_HUMAN : 45- 50: irtsp TfrrpK tlrlr RL2B_HUMAN : 83- 88: kfplt TesamK kiedn RL2B_RAT : 45- 50: irtsp TfrrpK tlrlr RL2B_RAT : 83- 88: kfplt TesamK kiedn RM41_YEAST : 5- 9: mprl Tvgt-K nmlyp RM41_YEAST : 101- 106: pnakh TpyqaK fivpk F 6: 7.8401 41( 28) V-x(1,2)-T Occurences: 41(28) RL23_ARATH : 8- 10: gikya Vf-T dksir RL23_ASTLO : 16- 18: flkyq Vf-T dktnd RL23_BACST : 81- 84: rkkai VtlT pdske RL23_BACSU : 12- 14: vlkrp Vi-T ersad RL23_BACSU : 81- 84: rrkai VklT adske RL23_ECOLI : 57- 60: eveve VvnT lvvkg RL23_ECOLI : 58- 60: vevev Vn-T lvvkg RL23_EUGGR : 30- 32: llknn Vy-T fdvdi RL23_EUGGR : 54- 57: etafs VkiT svnsy RL23_HAEIN : 57- 59: vkvds Vr-T vvvkg RL23_HALHA : 52- 54: vtvvd Vn-T qitpe RL23_HALMA : 52- 54: vtveq Vn-T qntmd RL23_MAIZE : 8- 10: gikya Vf-T ekslr RL23_MARPO : 8- 10: qvkyp Vl-T ektir RL23_METVA : 6- 9: mdafd VikT pivse RL23_METVA : 54- 56: aevae Vn-T nitpk RL23_MYCCA : 11- 13: vlkkp Vl-T eksfa RL23_MYCCA : 24- 26: ghkdn Vy-T flvdk RL23_MYCCA : 53- 55: vkves Vr-T inyda RL23_ORYSA : 8- 10: gikya Vf-T ekslr RL23_SINAL : 8- 10: gikya Vf-T dksiw RL23_SPIOL : 8- 10: gikya Vf-T dksiq RL23_THEMA : 84- 86: swkka Vv-T lkegy RL23_TOBAC : 8- 10: gikya Vf-T dksir RL23_WHEAT : 8- 10: gikya Vf-T ekslr RL23_YEREN : 58- 60: veved Vn-T llvkg RL23_YERPS : 58- 60: veved Vn-T llvkg RL25_PICJA : 26- 28: skalk Vr-T sttfr RL25_PICJA : 110- 112: vdvla Vn-T lirpn RL25_PICJA : 124- 127: tkkay VrlT adhda RL25_TOBAC : 122- 124: iqtkk Vn-T lirpd RL25_TOBAC : 136- 139: tkkay VrlT pdyda RL25_TRYBB : 41- 44: kptkv VkvT krkay RL25_TRYBB : 127- 129: rklyq Vk-T vkvnt RL25_TRYBB : 132- 134: vktvk Vn-T lirpd RL25_YEAST : 14- 17: akkav VkgT ngkka RL25_YEAST : 25- 27: kkalk Vr-T satfr RL25_YEAST : 118- 121: tkkay VrlT adyda RL2B_HUMAN : 124- 126: idvak Vn-T lirpd RL2B_RAT : 124- 126: idvak Vn-T lirpd RM41_YEAST : 6- 8: mprlt Vg-T knmly G 7: 7.8401 43( 28) V-x(0,1)-T Occurences: 43(28) RL23_ARATH : 8- 10: gikya VfT dksir RL23_ASTLO : 16- 18: flkyq VfT dktnd RL23_BACST : 81- 82: rkkai V-T ltpds RL23_BACSU : 12- 14: vlkrp ViT ersad RL23_ECOLI : 58- 60: vevev VnT lvvkg RL23_ECOLI : 85- 86: wkkay V-T lkegq RL23_EUGGR : 30- 32: llknn VyT fdvdi RL23_HAEIN : 57- 59: vkvds VrT vvvkg RL23_HAEIN : 84- 85: wkkay V-T laegq RL23_HALHA : 10- 11: idypl V-T ekamd RL23_HALHA : 47- 48: eseyd V-T vvdvn RL23_HALHA : 52- 54: vtvvd VnT qitpe RL23_HALMA : 10- 11: ikhph V-T ekamn RL23_HALMA : 47- 48: eeqyd V-T veqvn RL23_HALMA : 52- 54: vtveq VnT qntmd RL23_MAIZE : 8- 10: gikya VfT ekslr RL23_MARPO : 8- 10: qvkyp VlT ektir RL23_METVA : 54- 56: aevae VnT nitpk RL23_MYCCA : 11- 13: vlkkp VlT eksfa RL23_MYCCA : 24- 26: ghkdn VyT flvdk RL23_MYCCA : 53- 55: vkves VrT inyda RL23_ORYSA : 8- 10: gikya VfT ekslr RL23_SINAL : 8- 10: gikya VfT dksiw RL23_SPIOL : 8- 10: gikya VfT dksiq RL23_THEMA : 84- 86: swkka VvT lkegy RL23_THEMA : 85- 86: wkkav V-T lkegy RL23_TOBAC : 8- 10: gikya VfT dksir RL23_WHEAT : 8- 10: gikya VfT ekslr RL23_YEREN : 58- 60: veved VnT llvkg RL23_YEREN : 85- 86: wkkay V-T lkegq RL23_YERPS : 58- 60: veved VnT llvkg RL23_YERPS : 85- 86: wkkay V-T lkegq RL25_PICJA : 26- 28: skalk VrT sttfr RL25_PICJA : 110- 112: vdvla VnT lirpn RL25_TOBAC : 42- 43: kirtk V-T fhrpk RL25_TOBAC : 122- 124: iqtkk VnT lirpd RL25_TRYBB : 43- 44: tkvvk V-T krkay RL25_TRYBB : 127- 129: rklyq VkT vkvnt RL25_TRYBB : 132- 134: vktvk VnT lirpd RL25_YEAST : 25- 27: kkalk VrT satfr RL2B_HUMAN : 124- 126: idvak VnT lirpd RL2B_RAT : 124- 126: idvak VnT lirpd RM41_YEAST : 6- 8: mprlt VgT knmly H 8: 7.8401 66( 28) V-x(2,3)-K Occurences: 66(28) RL23_ARATH : 8- 12: gikya VftdK sirll RL23_ASTLO : 16- 20: flkyq VftdK tndll RL23_ASTLO : 34- 37: iyvfd Vdk-K lnklq RL23_BACST : 30- 33: kytfe Vdv-K ankte RL23_BACST : 32- 36: tfevd VkanK tevkd RL23_BACST : 49- 53: ekifg VkveK vnimn RL23_BACSU : 32- 36: tfevd VranK teakd RL23_BACSU : 49- 53: esifg VkvdK vnimn RL23_ECOLI : 16- 19: lraph Vse-K astam RL23_ECOLI : 62- 66: vvntl VvkgK vkrhg RL23_ECOLI : 63- 66: vntlv Vkg-K vkrhg RL23_ECOLI : 85- 88: wkkay Vtl-K egqnl RL23_EUGGR : 63- 67: svnsy VkssK yyrsn RL23_HAEIN : 29- 32: eksnt Vvl-K valda RL23_HAEIN : 60- 63: dsvrt Vvv-K gktkr RL23_HAEIN : 61- 65: svrtv VvkgK tkrrg RL23_HAEIN : 62- 65: vrtvv Vkg-K tkrrg RL23_HALHA : 10- 13: idypl Vte-K amdem RL23_HALMA : 10- 13: ikhph Vte-K amndm RL23_MAIZE : 8- 12: gikya VfteK slrll RL23_MARPO : 8- 12: qvkyp VlteK tirll RL23_MARPO : 70- 73: ttgyt Vry-K rmiik RL23_METVA : 12- 15: iktpi Vse-K tmkli RL23_METVA : 30- 33: rlvfy Ver-K atked RL23_MYCCA : 6- 9: mhite Vlk-K pvlte RL23_MYCCA : 11- 15: vlkkp VlteK sfagh RL23_MYCCA : 29- 32: vytfl Vdk-K ankvq RL23_MYCCA : 36- 39: kkank Vqi-K ktfee RL23_MYCCA : 36- 40: kkank VqikK tfeei RL23_MYCCA : 69- 72: rlgky Vgk-K psykk RL23_ORYSA : 8- 12: gikya VfteK slrll RL23_SINAL : 8- 12: gikya VftdK siwll RL23_SPIOL : 8- 12: gikya VftdK siqll RL23_THEMA : 53- 57: eklfn VkveK vniln RL23_THEMA : 84- 88: swkka VvtlK egyti RL23_THEMA : 85- 88: wkkav Vtl-K egyti RL23_TOBAC : 8- 12: gikya VftdK sirll RL23_WHEAT : 8- 12: gikya VfteK slrll RL23_YEREN : 16- 19: lraph Vse-K asaam RL23_YEREN : 63- 66: vntll Vkg-K skrhg RL23_YEREN : 85- 88: wkkay Vtl-K egqnl RL23_YERPS : 16- 19: lrsph Vse-K asaam RL23_YERPS : 63- 66: vntll Vkg-K skrhg RL23_YERPS : 85- 88: wkkay Vtl-K egqnl RL25_PICJA : 86- 89: tlvfq Vdi-K ankhq RL25_TOBAC : 98- 101: tlvfi Vdi-K adkkk RL25_TOBAC : 147- 150: ydald Van-K igii RL25_TRYBB : 21- 24: apksa Vsk-K vakkg RL25_TRYBB : 25- 28: avskk Vak-K gapaa RL25_TRYBB : 41- 45: kptkv VkvtK rkayt RL25_TRYBB : 43- 47: tkvvk VtkrK aytrp RL25_TRYBB : 72- 76: kpssn VsaiK nkwda RL25_TRYBB : 127- 131: rklyq VktvK vntli RL25_YEAST : 85- 88: ilvfq Vsm-K ankyq RL2B_HUMAN : 32- 36: avlkg VhshK kkkir RL2B_HUMAN : 100- 103: tlvfi Vdv-K ankhq RL2B_HUMAN : 102- 106: vfivd VkanK hqikq RL2B_HUMAN : 149- 152: ydald Van-K igii RL2B_RAT : 32- 36: avlkg VhshK kkkir RL2B_RAT : 100- 103: tlvfi Vdv-K ankhq RL2B_RAT : 102- 106: vfivd VkanK hqikq RL2B_RAT : 149- 152: ydald Van-K igii RM41_YEAST : 6- 9: mprlt Vgt-K nmlyp RM41_YEAST : 21- 25: qktla VgscK peqvp RM41_YEAST : 58- 61: evdin Vse-K iykwt RM41_YEAST : 79- 83: kehfk VggnK vyfpk RM41_YEAST : 84- 88: vggnk VyfpK ariil I 9: 7.3401 72( 28) K-x(3,5)-E Occurences: 72(28) RL23_ARATH : 36- 40: trtei Khwv--E lffgv RL23_ASTLO : 44- 48: nklqi Knii--E yifni RL23_BACST : 9- 15: prdii KrpiitE ntmnl RL23_BACST : 24- 29: nligq Kkytf-E vdvka RL23_BACST : 25- 29: ligqk Kytf--E vdvka RL23_BACST : 33- 38: fevdv Kankt-E vkdav RL23_BACST : 40- 44: nktev Kdav--E kifgv RL23_BACST : 88- 94: ltpds KeielfE v RL23_BACSU : 9- 15: prdvl KrpvitE rsadl RL23_BACSU : 25- 29: lmtee Kytf--E vdvra RL23_BACSU : 40- 44: nktea Kdav--E sifgv RL23_BACSU : 88- 94: ltads KeieifE a RL23_ECOLI : 19- 25: phvse KastamE ksnti RL23_ECOLI : 36- 42: vlkva KdatkaE ikaav RL23_ECOLI : 49- 54: kaavq Klfev-E vevvn RL23_EUGGR : 45- 49: skrqf Kdli--E tafsv RL23_EUGGR : 87- 92: krmfi Klndl-E tipff RL23_HAEIN : 18- 24: phise KatnnaE ksntv RL23_HALHA : 13- 17: plvte Kamd--E mdfqn RL23_HALHA : 67- 71: kkatv Klsa--E ddaqd RL23_HALMA : 6- 12: swdvi KhphvtE kamnd RL23_MAIZE : 5- 11: mdgi KyavftE kslrl RL23_MAIZE : 36- 40: tktei Khwv--E lffgv RL23_MARPO : 5- 11: mnqv KypvltE ktirl RL23_MARPO : 12- 18: pvlte KtirllE knqys RL23_MARPO : 36- 40: nktqi Kkwi--E lffnv RL23_METVA : 8- 14: afdvi KtpivsE ktmkl RL23_METVA : 15- 21: pivse KtmkliE eenrl RL23_METVA : 18- 22: sektm Klie--E enrlv RL23_METVA : 18- 23: sektm Kliee-E nrlvf RL23_METVA : 33- 37: fyver Katk--E dikea RL23_METVA : 36- 41: erkat Kedik-E aikql RL23_METVA : 44- 50: ikeai KqlfnaE vaevn RL23_METVA : 69- 73: kkayi Klkd--E ynage RL23_MYCCA : 8- 14: itevl KkpvltE ksfag RL23_MYCCA : 9- 14: tevlk Kpvlt-E ksfag RL23_MYCCA : 39- 43: nkvqi Kktf--E eifev RL23_MYCCA : 39- 44: nkvqi Kktfe-E ifevk RL23_MYCCA : 40- 44: kvqik Ktfe--E ifevk RL23_ORYSA : 5- 11: mdgi KyavftE kslrl RL23_ORYSA : 36- 40: tktei Khwv--E lffgv RL23_SINAL : 36- 40: trtei Khwv--E lffgv RL23_SPIOL : 36- 40: trtei Khwv--E lwnsy RL23_THEMA : 20- 26: piite KalilrE qrkyv RL23_THEMA : 29- 33: lreqr Kyvf--E vnpla RL23_THEMA : 40- 45: nplan Knlvk-E avekl RL23_THEMA : 44- 48: nknlv Keav--E klfnv RL23_THEMA : 68- 74: mkpkp KrrgifE gktrs RL23_THEMA : 94- 99: egyti Keleg-E h RL23_TOBAC : 36- 40: trtei Khwv--E lffgv RL23_WHEAT : 5- 11: mdgi KyavftE kslrl RL23_WHEAT : 36- 40: tktei Khwv--E lffgv RL23_YEREN : 19- 25: phvse KasaamE knnti RL23_YEREN : 36- 42: vlkva KdatkaE ikaav RL23_YEREN : 49- 54: kaavq Klfev-E vedvn RL23_YERPS : 19- 25: phvse KasaamE knnti RL23_YERPS : 36- 42: vlkva KdatkaE ikaav RL23_YERPS : 49- 54: kaavq Klfev-E vedvn RL25_PICJA : 100- 104: ikqav Kdly--E vdvla RL25_TOBAC : 76- 82: qygil KyplttE samkk RL25_TRYBB : 93- 99: plttd KamkkiE enntl RL25_TRYBB : 96- 100: tdkam Kkie--E nntlt RL25_YEAST : 95- 100: nkyqi Kkavk-E lyevn RL25_YEAST : 96- 100: kyqik Kavk--E lyevn RL25_YEAST : 99- 103: ikkav Kely--E vnilv RL2B_HUMAN : 4- 8: ipp Kakk--E apapp RL2B_HUMAN : 78- 84: hyaii KfplttE samkk RL2B_RAT : 4- 8: map Kakk--E apapp RL2B_RAT : 78- 84: hyaii KfplttE samkk RM41_YEAST : 47- 53: skild KsgsdrE vdinv RM41_YEAST : 67- 71: iykwt Kagi--E qgkeh RM41_YEAST : 158- 163: repqi Kkmti-E meepf RM41_YEAST : 159- 163: epqik Kmti--E meepf RM41_YEAST : 159- 165: epqik KmtiemE epfiw RM41_YEAST : 192- 196: pdnme Kyre--E rlncl J 10: 7.3401 48( 28) V-x(1,3)-T Occurences: 48(28) RL23_ARATH : 8- 10: gikya Vf--T dksir RL23_ASTLO : 16- 18: flkyq Vf--T dktnd RL23_BACST : 81- 84: rkkai Vtl-T pdske RL23_BACSU : 12- 14: vlkrp Vi--T ersad RL23_BACSU : 66- 70: gkskr VgryT gmtsr RL23_BACSU : 81- 84: rrkai Vkl-T adske RL23_ECOLI : 57- 60: eveve Vvn-T lvvkg RL23_ECOLI : 58- 60: vevev Vn--T lvvkg RL23_EUGGR : 30- 32: llknn Vy--T fdvdi RL23_EUGGR : 54- 57: etafs Vki-T svnsy RL23_HAEIN : 57- 59: vkvds Vr--T vvvkg RL23_HAEIN : 62- 66: vrtvv VkgkT krrgn RL23_HALHA : 50- 54: ydvtv VdvnT qitpe RL23_HALHA : 52- 54: vtvvd Vn--T qitpe RL23_HALMA : 52- 54: vtveq Vn--T qntmd RL23_MAIZE : 8- 10: gikya Vf--T ekslr RL23_MARPO : 8- 10: qvkyp Vl--T ektir RL23_METVA : 6- 9: mdafd Vik-T pivse RL23_METVA : 12- 16: iktpi VsekT mklie RL23_METVA : 54- 56: aevae Vn--T nitpk RL23_MYCCA : 11- 13: vlkkp Vl--T eksfa RL23_MYCCA : 24- 26: ghkdn Vy--T flvdk RL23_MYCCA : 53- 55: vkves Vr--T inyda RL23_ORYSA : 8- 10: gikya Vf--T ekslr RL23_SINAL : 8- 10: gikya Vf--T dksiw RL23_SPIOL : 8- 10: gikya Vf--T dksiq RL23_THEMA : 84- 86: swkka Vv--T lkegy RL23_TOBAC : 8- 10: gikya Vf--T dksir RL23_WHEAT : 8- 10: gikya Vf--T ekslr RL23_YEREN : 58- 60: veved Vn--T llvkg RL23_YERPS : 58- 60: veved Vn--T llvkg RL25_PICJA : 26- 28: skalk Vr--T sttfr RL25_PICJA : 26- 30: skalk VrtsT tfrlp RL25_PICJA : 110- 112: vdvla Vn--T lirpn RL25_PICJA : 124- 127: tkkay Vrl-T adhda RL25_TOBAC : 122- 124: iqtkk Vn--T lirpd RL25_TOBAC : 136- 139: tkkay Vrl-T pdyda RL25_TRYBB : 40- 44: akptk VvkvT krkay RL25_TRYBB : 41- 44: kptkv Vkv-T krkay RL25_TRYBB : 127- 129: rklyq Vk--T vkvnt RL25_TRYBB : 130- 134: yqvkt VkvnT lirpd RL25_TRYBB : 132- 134: vktvk Vn--T lirpd RL25_YEAST : 13- 17: aakka VvkgT ngkka RL25_YEAST : 14- 17: akkav Vkg-T ngkka RL25_YEAST : 25- 27: kkalk Vr--T satfr RL25_YEAST : 118- 121: tkkay Vrl-T adyda RL2B_HUMAN : 124- 126: idvak Vn--T lirpd RL2B_RAT : 124- 126: idvak Vn--T lirpd RM41_YEAST : 6- 8: mprlt Vg--T knmly Number of patterns evaluated by Pratt:15 Total running time: 0 seconds