------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file RIBOSOMAL_L19E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L19E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL19_DICDI 186 RL19_DROME 203 RL19_HALMA 148 RL19_HUMAN 196 RL19_METVA 149 RL19_MOUSE 196 RL19_YEAST 188 Pratt run started at Thu Feb 6 21:05:47 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 7( 7) R-x-L-x(3)-G-x-I-x(2)-K-x(5)-S-x(2)-R 2: 28.6904 7( 7) R-x-L-x(2,3)-G-x-I-x(2)-K-x(5)-S-x(2)-R 3: 28.1904 7( 7) R-x-L-x(3)-G-x-I-x(2)-K-x(5)-S-x(0,2)-R 4: 28.1904 8( 7) R-x(0,1)-L-x(3,4)-G-x-I-x(2)-K-x(5)-S-x(2)-R 5: 28.1904 8( 7) R-x(0,1)-L-x(2,3)-G-x-I-x(2)-K-x(5)-S-x(2)-R 6: 24.0203 7( 7) L-x(3)-G-x-I-x(2)-K-x(5)-S-x(0,2)-R 7: 23.0203 7( 7) G-x-G-x-R-x-G-x(1,3)-A-x(0,2)-R 8: 20.3503 7( 7) G-x(3)-V-W-x(2)-P-x(0,1)-E 9: 19.8503 7( 7) G-x-I-x(2)-K-x(5)-S-x(0,2)-R 10: 19.8503 7( 7) R-x-A-x(3)-L-x(2,3)-G-x(2,3)-V 11: 19.3503 7( 7) Y-x(2)-L-Y-x(1,3)-K-x(0,1)-G 12: 18.8503 7( 7) G-x-R-x-G-x(1,3)-A-x(0,2)-R 13: 16.1802 7( 7) R-x-L-x(1,2)-E-x(5)-K 14: 16.1802 7( 7) V-W-x(2)-P-x(0,1)-E 15: 15.6802 8( 7) R-x(3)-R-x-L-x(3,5)-G 16: 15.6802 10( 7) A-x(1,2)-A-R-x(2,3)-K 17: 15.6802 7( 7) K-x(0,1)-G-x(5)-K-x(3,4)-E 18: 15.6802 7( 7) K-x(2,3)-G-x(5)-K-x(3,4)-E 19: 15.6802 8( 7) R-x(1,2)-G-x(1,2)-G-x-R 20: 15.6802 9( 7) K-x(0,1)-R-x(1,2)-G-x(5)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 77.4309 7( 7) R-x-L-x(2,3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] B 2: 76.9309 8( 7) R-x(0,1)-L-x(3,4)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] C 3: 76.9309 8( 7) R-x(0,1)-L-x(2,3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] D 4: 74.7517 7( 7) R-x-L-x(3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R E 5: 60.8005 7( 7) R-x-L-[IV]-x-[DENT]-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G F 6: 56.7873 7( 7) G-x(2)-[KR]-V-W-[FILV]-[DN]-P-x(0,1)-E-x(2)-[DEG]-x-[AIV]-x(2)-[AN]-x(3)-[ADENQ]-x(2)-[KR]-x-[ILV]-x-[DNT]-[DEG]-x-[AI]-[IMV] G 7: 56.6304 7( 7) L-[IV]-x-[DENT]-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G H 8: 49.3691 7( 7) V-W-[FILV]-[DN]-P-x(0,1)-E-x(2)-[DEG]-x-[AIV]-x(2)-[AN]-x(3)-[ADENQ]-x(2)-[KR]-x-[ILV]-x-[DNT]-[DEG]-x-[AI]-[IMV] I 9: 47.0528 7( 7) G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G J 10: 32.8461 7( 7) R-x-A-x(3)-L-x(2,3)-G-x(2,3)-V-x(2)-[ADN]-[PV]-[ENT]-x(2)-[AEGNS]-[DEK] K 11: 32.5890 7( 7) G-x-G-x-R-x-G-x(1,3)-A-x(0,2)-R-x-[NP]-x(4)-W-x-[NQRS] L 12: 30.6518 7( 7) R-x(1,2)-G-x(1,2)-G-x-R-x-[GN]-[AST]-x-[EGN]-[AD]-x(2)-[PS] M 13: 28.4190 7( 7) G-x-R-x-G-x(1,3)-A-x(0,2)-R-x-[NP]-x(4)-W-x-[NQRS] N 14: 28.3993 7( 7) Y-[HR]-x-L-Y-x(1,3)-K-x(0,1)-G-[GN]-[AGV] O 15: 27.2847 7( 7) R-x-L-x(1,2)-E-x(5)-K-x-[DEK]-x(2)-[NRS]-x-[KR]-x(3)-[DER] P 16: 24.7260 8( 7) K-x(0,1)-R-x(1,2)-G-x(5)-G-x(3)-[AG]-x(3)-[AET]-[KR] Q 17: 22.8877 7( 7) R-[DNQST]-x(2)-R-[EKR]-L-x(3,5)-G-x-[AIL] R 18: 18.3317 7( 7) A-x(1,2)-A-R-x(2,3)-K-x-[DKR] S 19: 15.6802 7( 7) K-x(0,1)-G-x(5)-K-x(3,4)-E T 20: 15.6802 7( 7) K-x(2,3)-G-x(5)-K-x(3,4)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 77.4309 7( 7) R-x-L-x(2,3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] Occurences: 7(7) RL19_DICDI : 42- 90: srdnv RrLiatGfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEARlP skilw RL19_DROME : 42- 90: srqni RkLikdGlIikKpvvVhSryRvRknTeaRrkDRhcGfGkRkGtaNARmP tkllw RL19_HALMA : 41- 89: tredv ReLvdeGaIqaKdkkGnSrgRaRerQkkRayGHqkGaGsRkGkaGARqN skedw RL19_HUMAN : 42- 90: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_METVA : 41- 89: tkddi RlLindGiIvkKqekGiSsaRkKevQeqKrkGKrkGpGsRrGakGARtP kkekw RL19_MOUSE : 42- 90: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_YEAST : 41- 89: srnai RkLvknGtIvkKavtVhSksRtRahAqsKreGRhsGyGkRkGtrEARlP sqvvw B 2: 76.9309 8( 7) R-x(0,1)-L-x(3,4)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] Occurences: 8(7) RL19_DICDI : 42- 90: srdnv RrLiat-GfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEARlP skilw RL19_DICDI : 43- 90: rdnvr R-Liat-GfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEARlP skilw RL19_DROME : 42- 90: srqni RkLikd-GlIikKpvvVhSryRvRknTeaRrkDRhcGfGkRkGtaNARmP tkllw RL19_HALMA : 41- 89: tredv ReLvde-GaIqaKdkkGnSrgRaRerQkkRayGHqkGaGsRkGkaGARqN skedw RL19_HUMAN : 42- 90: srqqi RkLikd-GlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_METVA : 41- 89: tkddi RlLind-GiIvkKqekGiSsaRkKevQeqKrkGKrkGpGsRrGakGARtP kkekw RL19_METVA : 41- 89: tkddi R-LlindGiIvkKqekGiSsaRkKevQeqKrkGKrkGpGsRrGakGARtP kkekw RL19_MOUSE : 42- 90: srqqi RkLikd-GlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_YEAST : 41- 89: srnai RkLvkn-GtIvkKavtVhSksRtRahAqsKreGRhsGyGkRkGtrEARlP sqvvw C 3: 76.9309 8( 7) R-x(0,1)-L-x(2,3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R-x-[NP] Occurences: 8(7) RL19_DICDI : 42- 90: srdnv RrLiatGfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEARlP skilw RL19_DICDI : 43- 90: rdnvr R-LiatGfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEARlP skilw RL19_DROME : 42- 90: srqni RkLikdGlIikKpvvVhSryRvRknTeaRrkDRhcGfGkRkGtaNARmP tkllw RL19_HALMA : 41- 89: tredv ReLvdeGaIqaKdkkGnSrgRaRerQkkRayGHqkGaGsRkGkaGARqN skedw RL19_HUMAN : 42- 90: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_METVA : 41- 89: tkddi RlLindGiIvkKqekGiSsaRkKevQeqKrkGKrkGpGsRrGakGARtP kkekw RL19_MOUSE : 42- 90: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNARmP ekvtw RL19_YEAST : 41- 89: srnai RkLvknGtIvkKavtVhSksRtRahAqsKreGRhsGyGkRkGtrEARlP sqvvw D 4: 74.7517 7( 7) R-x-L-x(3)-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(2)-R-x-[KR]-x(2)-[ANQT]-x(2)-[KR]-x(2)-[DG]-[HKR]-x(2)-G-x-G-x-R-x-G-x(2)-[EGN]-A-R Occurences: 7(7) RL19_DICDI : 42- 88: srdnv RrLiatGfImrKpvvVhSrsRaRehNaaKrlGRhrGaGnRlGtrEAR lpski RL19_DROME : 42- 88: srqni RkLikdGlIikKpvvVhSryRvRknTeaRrkDRhcGfGkRkGtaNAR mptkl RL19_HALMA : 41- 87: tredv ReLvdeGaIqaKdkkGnSrgRaRerQkkRayGHqkGaGsRkGkaGAR qnske RL19_HUMAN : 42- 88: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNAR mpekv RL19_METVA : 41- 87: tkddi RlLindGiIvkKqekGiSsaRkKevQeqKrkGKrkGpGsRrGakGAR tpkke RL19_MOUSE : 42- 88: srqqi RkLikdGlIirKpvtVhSraRcRknTlaRrkGRhmGiGkRkGtaNAR mpekv RL19_YEAST : 41- 87: srnai RkLvknGtIvkKavtVhSksRtRahAqsKreGRhsGyGkRkGtrEAR lpsqv E 5: 60.8005 7( 7) R-x-L-[IV]-x-[DENT]-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G Occurences: 7(7) RL19_DICDI : 42- 79: srdnv RrLIaTGfImrKpvvVhSrsRaRehNaAKRlGrhrGaG nrlgt RL19_DROME : 42- 79: srqni RkLIkDGlIikKpvvVhSryRvRknTeARRkDrhcGfG krkgt RL19_HALMA : 41- 76: tredv ReLVdEGaIqaKdkkGnS--RgRarErQKKrAyghQkG agsrk RL19_HUMAN : 42- 79: srqqi RkLIkDGlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_METVA : 41- 78: tkddi RlLInDGiIvkKqekGiSsaRkKevQeQKRkGkrkGpG srrga RL19_MOUSE : 42- 79: srqqi RkLIkDGlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_YEAST : 41- 78: srnai RkLVkNGtIvkKavtVhSksRtRahAqSKReGrhsGyG krkgt F 6: 56.7873 7( 7) G-x(2)-[KR]-V-W-[FILV]-[DN]-P-x(0,1)-E-x(2)-[DEG]-x-[AIV]-x(2)-[AN]-x(3)-[ADENQ]-x(2)-[KR]-x-[ILV]-x-[DNT]-[DEG]-x-[AI]-[IMV] Occurences: 7(7) RL19_DICDI : 18- 51: silkc GkgRVWIDPnEiaDvAmaNsrdNvrRlIaTGfIM rkpvv RL19_DROME : 18- 51: svlrc GkkKVWLDPnEinEiAntNsrqNirKlIkDGlII kkpvv RL19_HALMA : 17- 49: dvldv GknRVWFNP-ErqGdIadAitrEdvReLvDEgAI qakdk RL19_HUMAN : 18- 51: svlrc GkkKVWLDPnEtnEiAnaNsrqQirKlIkDGlII rkpvt RL19_METVA : 17- 49: avldc GidRVWVDP-EnlEkVkmAitkDdiRlLiNDgII vkkqe RL19_MOUSE : 18- 51: svlrc GkkKVWLDPnEtnEiAnaNsrqQirKlIkDGlII rkpvt RL19_YEAST : 17- 50: svvgv GkrKVWLDPnEtsEiAqaNsrnAirKlVkNGtIV kkavt G 7: 56.6304 7( 7) L-[IV]-x-[DENT]-G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G Occurences: 7(7) RL19_DICDI : 44- 79: dnvrr LIaTGfImrKpvvVhSrsRaRehNaAKRlGrhrGaG nrlgt RL19_DROME : 44- 79: qnirk LIkDGlIikKpvvVhSryRvRknTeARRkDrhcGfG krkgt RL19_HALMA : 43- 76: edvre LVdEGaIqaKdkkGnS--RgRarErQKKrAyghQkG agsrk RL19_HUMAN : 44- 79: qqirk LIkDGlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_METVA : 43- 78: ddirl LInDGiIvkKqekGiSsaRkKevQeQKRkGkrkGpG srrga RL19_MOUSE : 44- 79: qqirk LIkDGlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_YEAST : 43- 78: nairk LVkNGtIvkKavtVhSksRtRahAqSKReGrhsGyG krkgt H 8: 49.3691 7( 7) V-W-[FILV]-[DN]-P-x(0,1)-E-x(2)-[DEG]-x-[AIV]-x(2)-[AN]-x(3)-[ADENQ]-x(2)-[KR]-x-[ILV]-x-[DNT]-[DEG]-x-[AI]-[IMV] Occurences: 7(7) RL19_DICDI : 22- 51: cgkgr VWIDPnEiaDvAmaNsrdNvrRlIaTGfIM rkpvv RL19_DROME : 22- 51: cgkkk VWLDPnEinEiAntNsrqNirKlIkDGlII kkpvv RL19_HALMA : 21- 49: vgknr VWFNP-ErqGdIadAitrEdvReLvDEgAI qakdk RL19_HUMAN : 22- 51: cgkkk VWLDPnEtnEiAnaNsrqQirKlIkDGlII rkpvt RL19_METVA : 21- 49: cgidr VWVDP-EnlEkVkmAitkDdiRlLiNDgII vkkqe RL19_MOUSE : 22- 51: cgkkk VWLDPnEtnEiAnaNsrqQirKlIkDGlII rkpvt RL19_YEAST : 21- 50: vgkrk VWLDPnEtsEiAqaNsrnAirKlVkNGtIV kkavt I 9: 47.0528 7( 7) G-x-I-x(2)-K-x(3)-[GV]-x-S-x(0,2)-R-x-[KR]-x(2)-[AENQT]-x-[ANQS]-[KR]-[KR]-x-[ADG]-x(3)-[GQ]-x-G Occurences: 7(7) RL19_DICDI : 48- 79: rliat GfImrKpvvVhSrsRaRehNaAKRlGrhrGaG nrlgt RL19_DROME : 48- 79: klikd GlIikKpvvVhSryRvRknTeARRkDrhcGfG krkgt RL19_HALMA : 47- 76: elvde GaIqaKdkkGnS--RgRarErQKKrAyghQkG agsrk RL19_HUMAN : 48- 79: klikd GlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_METVA : 47- 78: llind GiIvkKqekGiSsaRkKevQeQKRkGkrkGpG srrga RL19_MOUSE : 48- 79: klikd GlIirKpvtVhSraRcRknTlARRkGrhmGiG krkgt RL19_YEAST : 47- 78: klvkn GtIvkKavtVhSksRtRahAqSKReGrhsGyG krkgt J 10: 32.8461 7( 7) R-x-A-x(3)-L-x(2,3)-G-x(2,3)-V-x(2)-[ADN]-[PV]-[ENT]-x(2)-[AEGNS]-[DEK] Occurences: 7(7) RL19_DICDI : 9- 31: lklqk RlAasiLkc-GkgrVwiDPNeiAD vaman RL19_DROME : 9- 31: lklqk RlAasvLrc-GkkkVwlDPNeiNE iantn RL19_HALMA : 8- 30: lsaqk RlAadvLdv-GknrVwfNPErqGD iadai RL19_HUMAN : 9- 31: lrlqk RlAssvLrc-GkkkVwlDPNetNE ianan RL19_METVA : 8- 30: vstqr RiAaavLdc-GidrVwvDPEnlEK vkmai RL19_MOUSE : 9- 31: lrlqk RlAssvLrc-GkkkVwlDPNetNE ianan RL19_YEAST : 37- 59: aqans RnAirkLvknGti-VkkAVTvhSK srtra K 11: 32.5890 7( 7) G-x-G-x-R-x-G-x(1,3)-A-x(0,2)-R-x-[NP]-x(4)-W-x-[NQRS] Occurences: 7(7) RL19_DICDI : 77- 97: lgrhr GaGnRlGtreA--RlPskilWiR rirvl RL19_DROME : 77- 97: kdrhc GfGkRkGtanA--RmPtkllWmQ rqpfc RL19_DROME : 77- 97: kdrhc GfGkRkGt--AnaRmPtkllWmQ rqpfc RL19_HALMA : 76- 96: yghqk GaGsRkGkagA--RqNskedWeS riraq RL19_HALMA : 76- 96: yghqk GaGsRkGk--AgaRqNskedWeS riraq RL19_HUMAN : 77- 97: kgrhm GiGkRkGtanA--RmPekvtWmR rmril RL19_HUMAN : 77- 97: kgrhm GiGkRkGt--AnaRmPekvtWmR rmril RL19_METVA : 76- 96: kgkrk GpGsRrGakgA--RtPkkekWmN tirpl RL19_MOUSE : 77- 97: kgrhm GiGkRkGtanA--RmPekvtWmR rmril RL19_MOUSE : 77- 97: kgrhm GiGkRkGt--AnaRmPekvtWmR rmril RL19_YEAST : 76- 96: egrhs GyGkRkGtreA--RlPsqvvWiR rlrvl L 12: 30.6518 7( 7) R-x(1,2)-G-x(1,2)-G-x-R-x-[GN]-[AST]-x-[EGN]-[AD]-x(2)-[PS] Occurences: 7(7) RL19_DICDI : 74- 90: akrlg RhrGa-GnRlGTrEArlP skilw RL19_DROME : 74- 90: arrkd RhcGf-GkRkGTaNArmP tkllw RL19_HALMA : 80- 96: kgags Rk-GkaGaRqNSkEDweS riraq RL19_HUMAN : 74- 90: arrkg RhmGi-GkRkGTaNArmP ekvtw RL19_METVA : 74- 89: krkgk Rk-Gp-GsRrGAkGArtP kkekw RL19_MOUSE : 74- 90: arrkg RhmGi-GkRkGTaNArmP ekvtw RL19_YEAST : 73- 89: skreg RhsGy-GkRkGTrEArlP sqvvw M 13: 28.4190 7( 7) G-x-R-x-G-x(1,3)-A-x(0,2)-R-x-[NP]-x(4)-W-x-[NQRS] Occurences: 7(7) RL19_DICDI : 79- 97: rhrga GnRlGtreA--RlPskilWiR rirvl RL19_DROME : 79- 97: rhcgf GkRkGtanA--RmPtkllWmQ rqpfc RL19_DROME : 79- 97: rhcgf GkRkGt--AnaRmPtkllWmQ rqpfc RL19_HALMA : 78- 96: hqkga GsRkGkagA--RqNskedWeS riraq RL19_HALMA : 78- 96: hqkga GsRkGk--AgaRqNskedWeS riraq RL19_HUMAN : 79- 97: rhmgi GkRkGtanA--RmPekvtWmR rmril RL19_HUMAN : 79- 97: rhmgi GkRkGt--AnaRmPekvtWmR rmril RL19_METVA : 78- 96: krkgp GsRrGakgA--RtPkkekWmN tirpl RL19_MOUSE : 79- 97: rhmgi GkRkGtanA--RmPekvtWmR rmril RL19_MOUSE : 79- 97: rhmgi GkRkGt--AnaRmPekvtWmR rmril RL19_YEAST : 78- 96: rhsgy GkRkGtreA--RlPsqvvWiR rlrvl N 14: 28.3993 7( 7) Y-[HR]-x-L-Y-x(1,3)-K-x(0,1)-G-[GN]-[AGV] Occurences: 7(7) RL19_DICDI : 120- 131: idkhs YReLYlkaK-GNV fknkr RL19_DROME : 120- 131: idrhl YHdLYmkcK-GNV fknkr RL19_HALMA : 119- 129: lsssq YRdLYd--KaGGG efdsv RL19_HUMAN : 120- 131: idrhm YHsLYlkvK-GNV fknkr RL19_METVA : 119- 130: ierss YRkLYrmaK-GGA frsrn RL19_MOUSE : 120- 131: idrhm YHsLYlkvK-GNV fknkr RL19_YEAST : 119- 130: idkhl YHvLYkesK-GNA fkhkr O 15: 27.2847 7( 7) R-x-L-x(1,2)-E-x(5)-K-x-[DEK]-x(2)-[NRS]-x-[KR]-x(3)-[DER] Occurences: 7(7) RL19_DICDI : 136- 157: vfknk RtLi-EyivksKtEklReKliqD qaqar RL19_DROME : 136- 157: vfknk RvLm-EyihkkKaEkqRsKmlaD qaear RL19_HALMA : 41- 63: tredv ReLvdEgaiqaKdKkgNsRgraR erqkk RL19_HUMAN : 136- 157: vfknk RiLm-EhihklKaDkaRkKllaD qaear RL19_METVA : 102- 124: tirpl RtLlkElreneKiErsSyRklyR makgg RL19_MOUSE : 136- 157: vfknk RiLm-EhihklKaDkaRkKllaD qaear RL19_YEAST : 135- 156: afkhk RaLv-EhiiqaKaDaqReKalnE eaear P 16: 24.7260 8( 7) K-x(0,1)-R-x(1,2)-G-x(5)-G-x(3)-[AG]-x(3)-[AET]-[KR] Occurences: 8(7) RL19_DICDI : 70- 88: ehnaa K-Rl-GrhrgaGnrlGtreAR lpski RL19_DROME : 72- 92: tearr KdRhcGfgkrkGtanArmpTK llwmq RL19_HALMA : 67- 87: arerq KkRayGhqkgaGsrkGkagAR qnske RL19_HALMA : 68- 87: rerqk K-RayGhqkgaGsrkGkagAR qnske RL19_HUMAN : 72- 92: tlarr KgRhmGigkrkGtanArmpEK vtwmr RL19_METVA : 69- 87: evqeq K-Rk-GkrkgpGsrrGakgAR tpkke RL19_MOUSE : 72- 92: tlarr KgRhmGigkrkGtanArmpEK vtwmr RL19_YEAST : 69- 87: ahaqs K-Re-GrhsgyGkrkGtreAR lpsqv Q 17: 22.8877 7( 7) R-[DNQST]-x(2)-R-[EKR]-L-x(3,5)-G-x-[AIL] Occurences: 7(7) RL19_DICDI : 38- 50: amans RDnvRRLiat--GfI mrkpv RL19_DROME : 38- 50: antns RQniRKLikd--GlI ikkpv RL19_HALMA : 102- 114: riraq RTklRELrde--GtL sssqy RL19_HUMAN : 38- 50: anans RQqiRKLikd--GlI irkpv RL19_METVA : 116- 130: nekie RSsyRKLyrmakGgA frsrn RL19_MOUSE : 38- 50: anans RQqiRKLikd--GlI irkpv RL19_YEAST : 37- 49: aqans RNaiRKLvkn--GtI vkkav R 18: 18.3317 7( 7) A-x(1,2)-A-R-x(2,3)-K-x-[DKR] Occurences: 7(7) RL19_DICDI : 159- 167: liqdq Aq-ARrn-KnK sikdr RL19_DROME : 159- 167: mladq Ae-ARrq-KvR earkr RL19_HALMA : 84- 93: srkgk Ag-ARqnsKeD wesri RL19_HUMAN : 159- 167: lladq Ae-ARrs-KtK earkr RL19_METVA : 83- 93: gsrrg AkgARtpkKeK wmnti RL19_MOUSE : 159- 167: lladq Ae-ARrs-KtK earkr RL19_YEAST : 158- 166: alnee Ae-ARrl-KnR aardr S 19: 15.6802 7( 7) K-x(0,1)-G-x(5)-K-x(3,4)-E Occurences: 7(7) RL19_DICDI : 128- 140: lylka K-GnvfknKrtliE yivks RL19_DROME : 128- 140: lymkc K-GnvfknKrvlmE yihkk RL19_HALMA : 83- 95: gsrkg KaGarqnsKedw-E srira RL19_HUMAN : 128- 140: lylkv K-GnvfknKrilmE hihkl RL19_METVA : 55- 67: vkkqe K-GissarKkevqE qkrkg RL19_MOUSE : 128- 140: lylkv K-GnvfknKrilmE hihkl RL19_YEAST : 127- 139: lykes K-GnafkhKralvE hiiqa T 20: 15.6802 7( 7) K-x(2,3)-G-x(5)-K-x(3,4)-E Occurences: 7(7) RL19_DICDI : 126- 140: relyl Kak-GnvfknKrtliE yivks RL19_DROME : 126- 140: hdlym Kck-GnvfknKrvlmE yihkk RL19_HALMA : 81- 95: gagsr KgkaGarqnsKedw-E srira RL19_HUMAN : 126- 140: hslyl Kvk-GnvfknKrilmE hihkl RL19_METVA : 52- 67: giivk KqekGissarKkevqE qkrkg RL19_MOUSE : 126- 140: hslyl Kvk-GnvfknKrilmE hihkl RL19_YEAST : 124- 139: yhvly KeskGnafkhKralvE hiiqa Number of patterns evaluated by Pratt:2374 Total running time: 1 seconds