------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 32 sequences from file RIBOSOMAL_L16_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 32 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L16_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL16_ACHLA 10 RL16_ACYKS 136 RL16_BACST 26 RL16_BACSU 144 RL16_CHLRE 136 RL16_CHLSP 136 RL16_CHLTR 50 RL16_CYAPA 136 RL16_ECOLI 136 RL16_EPIVI 135 RL16_EUGGR 135 RL16_GRATE 135 RL16_HAEIN 136 RL16_MAIZE 136 RL16_MARPO 143 RL16_MYCCA 137 RL16_MYCPN 75 RL16_OENAM 90 RL16_ORYSA 136 RL16_SPIOG 135 RL16_SPIOL 135 RL16_THEMA 142 RL16_TOBAC 134 RL16_VIGUN 137 RM16_ACACA 141 RM16_ACAPO 39 RM16_MAIZE 185 RM16_MARPO 135 RM16_ORYSA 185 RM16_PETHY 155 RM16_PROWI 135 RM16_YEAST 232 Pratt run started at Thu Feb 6 21:05:44 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 101( 32) R-x(1,2)-K 2: 7.8401 113( 32) K-x(4,5)-R 3: 7.3401 125( 32) K-x(1,3)-R 4: 7.3401 115( 32) K-x(0,2)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 101( 32) R-x(1,2)-K B 2: 7.8401 113( 32) K-x(4,5)-R C 3: 7.3401 125( 32) K-x(1,3)-R D 4: 7.3401 115( 32) K-x(0,2)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 101( 32) R-x(1,2)-K Occurences: 101(32) RL16_ACHLA : 6- 8: mlmpk Rt-K yr RL16_ACYKS : 6- 8: mlqpk Rt-K frkrh RL16_ACYKS : 12- 14: tkfrk Rh-K grnrg RL16_ACYKS : 55- 58: rrtit RaiK rqgqv RL16_BACST : 6- 8: mlmpk Rv-K yrreh RL16_BACST : 16- 18: rehrg Rm-K graka RL16_BACST : 20- 22: grmkg Ra-K avri RL16_BACSU : 6- 8: mllpk Rv-K yrreh RL16_BACSU : 14- 16: yrreh Rg-K mrgra RL16_BACSU : 20- 22: gkmrg Ra-K ggtev RL16_BACSU : 56- 59: riamt RymK rggkv RL16_BACSU : 60- 63: trymk RggK vwiki RL16_CHLRE : 6- 8: mlspk Rt-K frkph RL16_CHLRE : 18- 20: hrghl Rg-K atrgn RL16_CHLRE : 23- 26: rgkat RgnK ivfgd RL16_CHLRE : 60- 63: tryvr RggK lwiri RL16_CHLSP : 6- 8: mlspk Rt-K frkph RL16_CHLSP : 18- 20: hrghl Rg-K atrgn RL16_CHLSP : 60- 63: tryvr RggK lwiri RL16_CHLTR : 42- 45: lgirt RfvK rverv RL16_CYAPA : 5- 8: mlsp RrtK frkqq RL16_CYAPA : 6- 8: mlspr Rt-K frkqq RL16_CYAPA : 16- 18: kqqrg Rm-K gistr RL16_CYAPA : 60- 63: nryvr RggK iwiri RL16_ECOLI : 6- 8: mlqpk Rt-K frkmh RL16_ECOLI : 55- 58: rramt RavK rqgki RL16_ECOLI : 59- 62: travk RqgK iwirv RL16_ECOLI : 81- 84: kplav RmgK gkgnv RL16_EPIVI : 8- 11: spqkt RfrK qhrgr RL16_EPIVI : 16- 18: kqhrg Rm-K gisyr RL16_EPIVI : 60- 63: trkfr RggK iwvrv RL16_EUGGR : 6- 8: mlspk Rt-K frkyh RL16_EUGGR : 56- 59: rrvit RyaK rggkl RL16_EUGGR : 60- 63: tryak RggK lwiri RL16_GRATE : 6- 8: mlspk Rt-K frkqh RL16_GRATE : 56- 59: rrtit RyvK rggki RL16_GRATE : 60- 63: tryvk RggK iwirv RL16_HAEIN : 6- 8: mlqpk Rt-K frkvh RL16_HAEIN : 55- 58: rrams RavK rqgki RL16_HAEIN : 59- 62: sravk RqgK iwirv RL16_HAEIN : 81- 84: kplev RmgK gkgnv RL16_MAIZE : 8- 11: spkrt RfrK qhrgr RL16_MAIZE : 16- 18: kqhrg Rm-K gkscr RL16_MAIZE : 60- 63: tryar RggK iwvri RL16_MARPO : 6- 8: mlspk Rt-K frkqh RL16_MARPO : 60- 63: tryar RggK lwiri RL16_MYCCA : 6- 8: mlqpk Rt-K yrkph RL16_MYCCA : 56- 59: riamt RymK rdgki RL16_MYCCA : 60- 63: trymk RdgK iwmri RL16_MYCCA : 128- 130: hklpi Rc-K fvkrg RL16_MYCPN : 6- 8: mlqpk Rt-K yrkph RL16_OENAM : 15- 18: trnvr RggK twvri RL16_ORYSA : 8- 11: spkrt RfrK qhrgr RL16_ORYSA : 16- 18: kqhrg Rm-K gksyr RL16_ORYSA : 60- 63: tryar RggK iwvri RL16_SPIOG : 8- 11: spkrt RfrK qhrgr RL16_SPIOG : 16- 18: kqhrg Rm-K gksyr RL16_SPIOG : 60- 63: sryar RggK iwvrl RL16_SPIOL : 8- 11: spkrt RfrK qhrgr RL16_SPIOL : 16- 18: kqhrg Rm-K gisyr RL16_SPIOL : 60- 63: trngr RggK iwvri RL16_THEMA : 5- 8: mlmp RrvK yrkqq RL16_THEMA : 6- 8: mlmpr Rv-K yrkqq RL16_THEMA : 16- 18: kqqrg Rm-K gkakg RL16_THEMA : 56- 59: riaml RvmK rsgki RL16_THEMA : 60- 63: lrvmk RsgK iwiri RL16_THEMA : 82- 85: kppes RmgK gkgnv RL16_TOBAC : 8- 11: spkrt RfrK qhrgr RL16_TOBAC : 16- 18: kqhrg Rm-K gishr RL16_TOBAC : 60- 63: trnar RggK iwvri RL16_VIGUN : 10- 13: npqrt RfrK qhrgr RL16_VIGUN : 18- 20: kqhrg Rm-K gisyr RM16_ACACA : 2- 4: m Rf-K kyfki RM16_ACACA : 2- 5: m RfkK yfkik RM16_ACACA : 51- 54: lkaik RviK kknfl RM16_ACACA : 80- 82: dvrmg Rg-K gspav RM16_ACACA : 111- 114: etlll RalK ssslr RM16_ACAPO : 10- 13: etlll RalK ssslr RM16_MAIZE : 47- 49: vlypk Rt-K yskys RM16_MAIZE : 110- 113: sgqfr RncK iwvrv RM16_MAIZE : 135- 137: evrmg Rg-K gnptg RM16_MARPO : 6- 8: mlypk Rt-K frkyq RM16_MARPO : 16- 18: kyqkg Rc-K gckad RM16_MARPO : 60- 63: srkfr RnsK iwvrv RM16_MARPO : 82- 85: kpaev RmgK gkgnt RM16_MARPO : 96- 99: kgwia RvlK gqilf RM16_ORYSA : 47- 49: vlypk Rt-K yskys RM16_ORYSA : 110- 113: sgqfr RncK iwvrv RM16_ORYSA : 135- 137: evrmg Rg-K gnptg RM16_PETHY : 33- 35: vlypk Rt-K yskyr RM16_PETHY : 46- 49: kgrcs RgcK pdgtq RM16_PETHY : 96- 99: sgqfr RngK iwvrv RM16_PETHY : 121- 123: evrmg Rg-K gnptg RM16_PROWI : 16- 18: kfqks Rv-K gvqsn RM16_PROWI : 28- 31: ntdql RygK fgikt RM16_PROWI : 56- 59: rrvit RkfK rlgvi RM16_PROWI : 82- 85: kpaev RmgK gkgap RM16_YEAST : 35- 38: nttia RrfK heyap RM16_YEAST : 36- 38: ttiar Rf-K heyap RM16_YEAST : 44- 46: heyap Rf-K ivqkk RM16_YEAST : 77- 79: gkygl Rl-K segir RM16_YEAST : 127- 130: kgnet RmgK gkggf B 2: 7.8401 113( 32) K-x(4,5)-R Occurences: 113(32) RL16_ACHLA : 5- 10: mlmp Krtky-R RL16_ACYKS : 5- 10: mlqp Krtkf-R krhkg RL16_ACYKS : 11- 16: rtkfr Krhkg-R nrgla RL16_ACYKS : 76- 81: tpvte Kplev-R mgngk RL16_BACST : 5- 10: mlmp Krvky-R rehrg RL16_BACST : 5- 11: mlmp KrvkyrR ehrgr RL16_BACST : 8- 14: mpkrv KyrrehR grmkg RL16_BACSU : 5- 10: mllp Krvky-R rehrg RL16_BACSU : 5- 11: mllp KrvkyrR ehrgk RL16_BACSU : 8- 14: lpkrv KyrrehR gkmrg RL16_BACSU : 77- 82: kpyta Kplev-R mgsgk RL16_BACSU : 128- 134: hklpi KtkfvkR eeigg RL16_CHLRE : 5- 10: mlsp Krtkf-R kphrg RL16_CHLRE : 8- 14: spkrt KfrkphR ghlrg RL16_CHLRE : 72- 77: rifpd Kavtm-R pagtr RL16_CHLSP : 5- 10: mlsp Krtkf-R kphrg RL16_CHLSP : 8- 14: spkrt KfrkphR ghlrg RL16_CHLSP : 72- 77: rifpd Kavtm-R pagtr RL16_CHLTR : 36- 42: rraaa KlgirtR fvkrv RL16_CYAPA : 8- 14: sprrt KfrkqqR grmkg RL16_CYAPA : 11- 16: rtkfr Kqqrg-R mkgis RL16_CYAPA : 18- 23: qrgrm Kgist-R gnnlv RL16_CYAPA : 72- 77: rifpd Kpvtm-R paetr RL16_CYAPA : 130- 135: lpikt Kfiss-R v RL16_ECOLI : 5- 10: mlqp Krtkf-R kmhkg RL16_ECOLI : 11- 16: rtkfr Kmhkg-R nrgla RL16_ECOLI : 34- 40: gsfgl KavgrgR ltarq RL16_ECOLI : 76- 81: kpite Kplav-R mgkgk RL16_EPIVI : 11- 16: ktrfr Kqhrg-R mkgis RL16_EPIVI : 18- 23: hrgrm Kgisy-R gnnic RL16_EPIVI : 72- 77: rvfpd Kpvtv-R ssetr RL16_EUGGR : 5- 10: mlsp Krtkf-R kyhrg RL16_EUGGR : 8- 14: spkrt KfrkyhR grltg RL16_EUGGR : 11- 16: rtkfr Kyhrg-R ltgki RL16_EUGGR : 72- 77: rifpd Kpvtf-R aaetr RL16_EUGGR : 124- 130: kiagy KmpiktR vivki RL16_GRATE : 5- 10: mlsp Krtkf-R kqhrn RL16_GRATE : 8- 14: spkrt KfrkqhR nrmng RL16_GRATE : 11- 16: rtkfr Kqhrn-R mngka RL16_GRATE : 72- 77: rvfpd Kpita-R paetr RL16_HAEIN : 5- 10: mlqp Krtkf-R kvhkg RL16_HAEIN : 11- 16: rtkfr Kvhkg-R nrgia RL16_HAEIN : 34- 40: gtygl KavgrcR ltarq RL16_HAEIN : 76- 81: kpite Kplev-R mgkgk RL16_MAIZE : 5- 10: mlsp Krtrf-R kqhrg RL16_MAIZE : 11- 16: rtrfr Kqhrg-R mkgks RL16_MAIZE : 18- 23: hrgrm Kgksc-R gnhic RL16_MAIZE : 72- 77: rifpd Kpvti-R ptetr RL16_MARPO : 5- 10: mlsp Krtkf-R kqhcg RL16_MARPO : 18- 23: hcgnl Kgist-R gnvic RL16_MARPO : 72- 77: rifpd Kpiti-R paetr RL16_MYCCA : 5- 10: mlqp Krtky-R kphrv RL16_MYCCA : 8- 14: qpkrt KyrkphR vsyeg RL16_MYCCA : 76- 82: hmamt KkpaevR mgsgk RL16_MYCCA : 77- 82: mamtk Kpaev-R mgsgk RL16_MYCPN : 5- 10: mlqp Krtky-R kphnv RL16_OENAM : 27- 32: rifpd Kpvtl-R aaetr RL16_ORYSA : 5- 10: mlsp Krtrf-R kqhrg RL16_ORYSA : 11- 16: rtrfr Kqhrg-R mkgks RL16_ORYSA : 18- 23: hrgrm Kgksy-R gncic RL16_ORYSA : 72- 77: rifpd Kpvti-R ptetr RL16_SPIOG : 5- 10: mlsp Krtrf-R kqhrg RL16_SPIOG : 11- 16: rtrfr Kqhrg-R mkgks RL16_SPIOG : 18- 23: hrgrm Kgksy-R gnhis RL16_SPIOG : 72- 77: rlfpd Krvtl-R paetr RL16_SPIOL : 5- 10: mlsp Krtrf-R kqhrg RL16_SPIOL : 11- 16: rtrfr Kqhrg-R mkgis RL16_SPIOL : 18- 23: hrgrm Kgisy-R gnric RL16_SPIOL : 72- 77: rifpd Kpvtv-R paetr RL16_THEMA : 8- 14: mprrv KyrkqqR grmkg RL16_THEMA : 11- 16: rvkyr Kqqrg-R mkgka RL16_THEMA : 76- 82: dkpyt KkppesR mgkgk RL16_THEMA : 77- 82: kpytk Kppes-R mgkgk RL16_TOBAC : 5- 10: mlsp Krtrf-R kqhrg RL16_TOBAC : 11- 16: rtrfr Kqhrg-R mkgis RL16_TOBAC : 18- 23: hrgrm Kgish-R gnhis RL16_TOBAC : 72- 77: rifpd Kpvtl-R paetr RL16_VIGUN : 13- 18: rtrfr Kqhrg-R mkgis RL16_VIGUN : 20- 25: hrgrm Kgisy-R gnnic RL16_VIGUN : 74- 79: rifpd Kpvtv-R ptetr RM16_ACACA : 72- 77: wmltr Kprdv-R mgrgk RM16_ACACA : 114- 119: llral Ksssl-R lpvpt RM16_ACACA : 128- 133: ptkvv Kkydk-R tdcik RM16_ACAPO : 13- 18: llral Ksssl-R lpvpt RM16_ACAPO : 27- 32: ptkii Kkydk-R tdcik RM16_MAIZE : 12- 18: myltr KsimllR kyllv RM16_MAIZE : 52- 57: rtkys Kyskc-R csrgr RM16_MAIZE : 55- 60: yskys Kcrcs-R grepd RM16_MAIZE : 77- 83: grygt KssragR lsyra RM16_MAIZE : 127- 132: lpitg Kpaev-R mgrgk RM16_MARPO : 5- 10: mlyp Krtkf-R kyqkg RM16_MARPO : 11- 16: rtkfr Kyqkg-R ckgck RM16_MARPO : 35- 41: gkygi KsceagR isyqa RM16_MARPO : 77- 82: ipits Kpaev-R mgkgk RM16_MARPO : 91- 96: gkgnt Kgwia-R vlkgq RM16_ORYSA : 12- 18: myltr KsimllR kyplv RM16_ORYSA : 52- 57: rtkys Kyskc-R csrgc RM16_ORYSA : 55- 60: yskys Kcrcs-R gcepd RM16_ORYSA : 77- 83: grygt KscragR lsyra RM16_ORYSA : 127- 132: lpitg Kpaev-R mgrgk RM16_PETHY : 35- 40: ypkrt Kysky-R kgrcs RM16_PETHY : 38- 43: rtkys Kyrkg-R csrgc RM16_PETHY : 41- 46: yskyr Kgrcs-R gckpd RM16_PETHY : 63- 69: grygt KscragR lsyra RM16_PETHY : 113- 118: ipitg Kptev-R mgrgk RM16_PROWI : 11- 16: ntkfr Kfqks-R vkgvq RM16_PROWI : 35- 41: gkfgi KtvsaaR ipart RM16_PROWI : 77- 82: iavsg Kpaev-R mgkgk RM16_PROWI : 124- 130: rlads KlpiktR fvmys RM16_YEAST : 38- 44: iarrf KheyapR fkivq RM16_YEAST : 50- 55: fkivq Kkqkg-R vpvrt RM16_YEAST : 53- 59: vqkkq KgrvpvR tggsi RM16_YEAST : 79- 84: yglrl Ksegi-R isaqq RM16_YEAST : 122- 127: vavci Kgnet-R mgkgk RM16_YEAST : 227- 232: qepqy Klfrg-R C 3: 7.3401 125( 32) K-x(1,3)-R Occurences: 125(32) RL16_ACHLA : 8- 10: mpkrt Ky--R RL16_ACYKS : 8- 10: qpkrt Kf--R krhkg RL16_ACYKS : 8- 12: qpkrt KfrkR hkgrn RL16_ACYKS : 14- 16: frkrh Kg--R nrgla RL16_ACYKS : 14- 18: frkrh KgrnR glang RL16_ACYKS : 34- 38: gtfgi KavdR gqmta RL16_ACYKS : 123- 127: alats KlplR ttfvt RL16_BACST : 8- 10: mpkrv Ky--R rehrg RL16_BACST : 8- 11: mpkrv Kyr-R ehrgr RL16_BACST : 18- 20: hrgrm Kg--R akavr RL16_BACST : 22- 25: mkgra Kav-R i RL16_BACSU : 8- 10: lpkrv Ky--R rehrg RL16_BACSU : 8- 11: lpkrv Kyr-R ehrgk RL16_BACSU : 16- 18: rehrg Km--R grakg RL16_BACSU : 16- 20: rehrg KmrgR akggt RL16_BACSU : 130- 134: lpikt KfvkR eeigg RL16_CHLRE : 8- 10: spkrt Kf--R kphrg RL16_CHLRE : 11- 14: rtkfr Kph-R ghlrg RL16_CHLRE : 20- 23: ghlrg Kat-R gnkiv RL16_CHLRE : 63- 67: vrrgg KlwiR ifpdk RL16_CHLSP : 8- 10: spkrt Kf--R kphrg RL16_CHLSP : 11- 14: rtkfr Kph-R ghlrg RL16_CHLSP : 20- 23: ghlrg Kat-R gntiv RL16_CHLSP : 63- 67: vrrgg KlwiR ifpdk RL16_CHLTR : 36- 40: rraaa KlgiR trfvk RL16_CHLTR : 45- 49: rtrfv KrveR v RL16_CYAPA : 8- 10: sprrt Kf--R kqqrg RL16_CYAPA : 11- 14: rtkfr Kqq-R grmkg RL16_CYAPA : 63- 67: vrrgg KiwiR ifpdk RL16_CYAPA : 98- 101: wvaiv Kpg-R vifei RL16_CYAPA : 115- 119: sqema KaafR iatfk RL16_ECOLI : 8- 10: qpkrt Kf--R kmhkg RL16_ECOLI : 14- 16: frkmh Kg--R nrgla RL16_ECOLI : 14- 18: frkmh KgrnR glaqg RL16_ECOLI : 34- 38: gsfgl KavgR grlta RL16_ECOLI : 62- 66: vkrqg KiwiR vfpdk RL16_EPIVI : 6- 8: mlspq Kt--R frkqh RL16_EPIVI : 6- 10: mlspq KtrfR kqhrg RL16_EPIVI : 11- 14: ktrfr Kqh-R grmkg RL16_EPIVI : 57- 59: raitr Kf--R rggki RL16_EPIVI : 57- 60: raitr Kfr-R ggkiw RL16_EPIVI : 63- 67: frrgg KiwvR vfpdk RL16_EUGGR : 8- 10: spkrt Kf--R kyhrg RL16_EUGGR : 11- 14: rtkfr Kyh-R grltg RL16_EUGGR : 63- 67: akrgg KlwiR ifpdk RL16_EUGGR : 128- 130: ykmpi Kt--R vivki RL16_GRATE : 8- 10: spkrt Kf--R kqhrn RL16_GRATE : 11- 14: rtkfr Kqh-R nrmng RL16_GRATE : 63- 67: vkrgg KiwiR vfpdk RL16_HAEIN : 8- 10: qpkrt Kf--R kvhkg RL16_HAEIN : 14- 16: frkvh Kg--R nrgia RL16_HAEIN : 14- 18: frkvh KgrnR giasg RL16_HAEIN : 34- 38: gtygl KavgR crlta RL16_HAEIN : 62- 66: vkrqg KiwiR vfpdk RL16_MAIZE : 5- 8: mlsp Krt-R frkqh RL16_MAIZE : 11- 14: rtrfr Kqh-R grmkg RL16_MAIZE : 20- 23: grmkg Ksc-R gnhic RL16_MAIZE : 63- 67: arrgg KiwvR ifpdk RL16_MAIZE : 98- 101: wvavv Kpg-R ilyem RL16_MAIZE : 124- 128: siaas KmpiR sqflr RL16_MARPO : 8- 10: spkrt Kf--R kqhcg RL16_MARPO : 63- 67: arrgg KlwiR ifpdk RL16_MARPO : 124- 128: kiaay KmpiR tqfit RL16_MYCCA : 8- 10: qpkrt Ky--R kphrv RL16_MYCCA : 11- 14: rtkyr Kph-R vsyeg RL16_MYCCA : 63- 67: mkrdg KiwmR ifphm RL16_MYCCA : 124- 128: rlamh KlpiR ckfvk RL16_MYCCA : 130- 134: lpirc KfvkR gen RL16_MYCPN : 8- 10: qpkrt Ky--R kphnv RL16_MYCPN : 63- 67: lgktg KmwiR ifphm RL16_OENAM : 18- 22: vrrgg KtwvR ifpdk RL16_OENAM : 53- 56: wvavv Kpg-R ilyem RL16_OENAM : 79- 83: siaas KmpiR tqfii RL16_ORYSA : 5- 8: mlsp Krt-R frkqh RL16_ORYSA : 11- 14: rtrfr Kqh-R grmkg RL16_ORYSA : 20- 23: grmkg Ksy-R gncic RL16_ORYSA : 63- 67: arrgg KiwvR ifpdk RL16_ORYSA : 98- 101: wvavv Kpg-R ilyem RL16_ORYSA : 124- 128: siaas KmpiR sqflr RL16_SPIOG : 5- 8: mlsp Krt-R frkqh RL16_SPIOG : 11- 14: rtrfr Kqh-R grmkg RL16_SPIOG : 20- 23: grmkg Ksy-R gnhis RL16_SPIOG : 63- 67: arrgg KiwvR lfpdk RL16_SPIOG : 98- 101: wvsvv Kpg-R ilyei RL16_SPIOG : 124- 128: llaas KmpiR tqfii RL16_SPIOL : 5- 8: mlsp Krt-R frkqh RL16_SPIOL : 11- 14: rtrfr Kqh-R grmkg RL16_SPIOL : 63- 67: grrgg KiwvR ifpdk RL16_SPIOL : 98- 101: wvavv Kpg-R ilyei RL16_SPIOL : 124- 128: aiaas KmpiR tqfii RL16_THEMA : 8- 10: mprrv Ky--R kqqrg RL16_THEMA : 11- 14: rvkyr Kqq-R grmkg RL16_THEMA : 63- 67: mkrsg KiwiR ifpdk RL16_THEMA : 130- 134: lpiat KivpR hhigg RL16_TOBAC : 5- 8: mlsp Krt-R frkqh RL16_TOBAC : 11- 14: rtrfr Kqh-R grmkg RL16_TOBAC : 63- 67: arrgg KiwvR ifpdk RL16_TOBAC : 98- 101: wvavv Kpg-R ilyem RL16_TOBAC : 124- 128: slaas KmpiR tqfii RL16_VIGUN : 13- 16: rtrfr Kqh-R grmkg RL16_VIGUN : 126- 130: siass KmpiR tqfii RM16_ACACA : 47- 51: ltasl KaikR vikkk RM16_ACACA : 72- 74: wmltr Kp--R dvrmg RM16_ACACA : 129- 133: tkvvk KydkR tdcik RM16_ACAPO : 28- 32: tkiik KydkR tdcik RM16_MAIZE : 37- 39: gshiv Ki--R rdvly RM16_MAIZE : 37- 40: gshiv Kir-R dvlyp RM16_MAIZE : 55- 57: yskys Kc--R csrgr RM16_MAIZE : 77- 80: grygt Kss-R agrls RM16_MAIZE : 113- 117: frrnc KiwvR vladl RM16_MARPO : 8- 10: ypkrt Kf--R kyqkg RM16_MARPO : 14- 16: frkyq Kg--R ckgck RM16_MARPO : 57- 59: raisr Kf--R rnski RM16_MARPO : 57- 60: raisr Kfr-R nskiw RM16_MARPO : 63- 67: frrns KiwvR vfadi RM16_ORYSA : 37- 39: gshiv Ki--R rdvly RM16_ORYSA : 37- 40: gshiv Kir-R dvlyp RM16_ORYSA : 55- 57: yskys Kc--R csrgc RM16_ORYSA : 77- 80: grygt Ksc-R agrls RM16_ORYSA : 113- 117: frrnc KiwvR vladl RM16_PETHY : 23- 26: gfliv Kkk-R dvlyp RM16_PETHY : 24- 26: flivk Kk--R dvlyp RM16_PETHY : 38- 40: rtkys Ky--R kgrcs RM16_PETHY : 41- 43: yskyr Kg--R csrgc RM16_PETHY : 63- 66: grygt Ksc-R agrls RM16_PETHY : 99- 103: frrng KiwvR vladi RM16_PROWI : 8- 10: qpnnt Kf--R kfqks RM16_PROWI : 14- 16: frkfq Ks--R vkgvq RM16_PROWI : 57- 60: rvitr Kfk-R lgviw RM16_PROWI : 96- 99: qywvc Kvk-R gailf RM16_PROWI : 115- 119: spqla KqaaR ladsk RM16_PROWI : 128- 130: sklpi Kt--R fvmys RM16_YEAST : 51- 55: kivqk KqkgR vpvrt RM16_YEAST : 53- 55: vqkkq Kg--R vpvrt RM16_YEAST : 73- 77: tlqfg KyglR lkseg RM16_YEAST : 159- 162: ddlhe Kva-R eafrk RM16_YEAST : 227- 230: qepqy Klf-R gr D 4: 7.3401 115( 32) K-x(0,2)-R Occurences: 115(32) RL16_ACHLA : 5- 6: mlmp K--R tkyr RL16_ACHLA : 8- 10: mpkrt Ky-R RL16_ACYKS : 5- 6: mlqp K--R tkfrk RL16_ACYKS : 8- 10: qpkrt Kf-R krhkg RL16_ACYKS : 11- 12: rtkfr K--R hkgrn RL16_ACYKS : 14- 16: frkrh Kg-R nrgla RL16_ACYKS : 58- 59: itrai K--R qgqvw RL16_BACST : 5- 6: mlmp K--R vkyrr RL16_BACST : 8- 10: mpkrv Ky-R rehrg RL16_BACST : 8- 11: mpkrv KyrR ehrgr RL16_BACST : 18- 20: hrgrm Kg-R akavr RL16_BACST : 22- 25: mkgra KavR i RL16_BACSU : 5- 6: mllp K--R vkyrr RL16_BACSU : 8- 10: lpkrv Ky-R rehrg RL16_BACSU : 8- 11: lpkrv KyrR ehrgk RL16_BACSU : 16- 18: rehrg Km-R grakg RL16_BACSU : 59- 60: mtrym K--R ggkvw RL16_BACSU : 133- 134: ktkfv K--R eeigg RL16_CHLRE : 5- 6: mlsp K--R tkfrk RL16_CHLRE : 8- 10: spkrt Kf-R kphrg RL16_CHLRE : 11- 14: rtkfr KphR ghlrg RL16_CHLRE : 20- 23: ghlrg KatR gnkiv RL16_CHLSP : 5- 6: mlsp K--R tkfrk RL16_CHLSP : 8- 10: spkrt Kf-R kphrg RL16_CHLSP : 11- 14: rtkfr KphR ghlrg RL16_CHLSP : 20- 23: ghlrg KatR gntiv RL16_CHLTR : 45- 46: rtrfv K--R verv RL16_CYAPA : 8- 10: sprrt Kf-R kqqrg RL16_CYAPA : 11- 14: rtkfr KqqR grmkg RL16_CYAPA : 98- 101: wvaiv KpgR vifei RL16_ECOLI : 5- 6: mlqp K--R tkfrk RL16_ECOLI : 8- 10: qpkrt Kf-R kmhkg RL16_ECOLI : 14- 16: frkmh Kg-R nrgla RL16_ECOLI : 58- 59: mtrav K--R qgkiw RL16_EPIVI : 6- 8: mlspq Kt-R frkqh RL16_EPIVI : 11- 14: ktrfr KqhR grmkg RL16_EPIVI : 57- 59: raitr Kf-R rggki RL16_EPIVI : 57- 60: raitr KfrR ggkiw RL16_EPIVI : 115- 116: tenia K--R ailia RL16_EUGGR : 5- 6: mlsp K--R tkfrk RL16_EUGGR : 8- 10: spkrt Kf-R kyhrg RL16_EUGGR : 11- 14: rtkfr KyhR grltg RL16_EUGGR : 59- 60: itrya K--R ggklw RL16_EUGGR : 128- 130: ykmpi Kt-R vivki RL16_GRATE : 5- 6: mlsp K--R tkfrk RL16_GRATE : 8- 10: spkrt Kf-R kqhrn RL16_GRATE : 11- 14: rtkfr KqhR nrmng RL16_GRATE : 59- 60: itryv K--R ggkiw RL16_HAEIN : 5- 6: mlqp K--R tkfrk RL16_HAEIN : 8- 10: qpkrt Kf-R kvhkg RL16_HAEIN : 14- 16: frkvh Kg-R nrgia RL16_HAEIN : 58- 59: msrav K--R qgkiw RL16_MAIZE : 5- 6: mlsp K--R trfrk RL16_MAIZE : 5- 8: mlsp KrtR frkqh RL16_MAIZE : 11- 14: rtrfr KqhR grmkg RL16_MAIZE : 20- 23: grmkg KscR gnhic RL16_MAIZE : 98- 101: wvavv KpgR ilyem RL16_MARPO : 5- 6: mlsp K--R tkfrk RL16_MARPO : 8- 10: spkrt Kf-R kqhcg RL16_MYCCA : 5- 6: mlqp K--R tkyrk RL16_MYCCA : 8- 10: qpkrt Ky-R kphrv RL16_MYCCA : 11- 14: rtkyr KphR vsyeg RL16_MYCCA : 59- 60: mtrym K--R dgkiw RL16_MYCCA : 133- 134: rckfv K--R gen RL16_MYCPN : 5- 6: mlqp K--R tkyrk RL16_MYCPN : 8- 10: qpkrt Ky-R kphnv RL16_OENAM : 53- 56: wvavv KpgR ilyem RL16_ORYSA : 5- 6: mlsp K--R trfrk RL16_ORYSA : 5- 8: mlsp KrtR frkqh RL16_ORYSA : 11- 14: rtrfr KqhR grmkg RL16_ORYSA : 20- 23: grmkg KsyR gncic RL16_ORYSA : 98- 101: wvavv KpgR ilyem RL16_SPIOG : 5- 6: mlsp K--R trfrk RL16_SPIOG : 5- 8: mlsp KrtR frkqh RL16_SPIOG : 11- 14: rtrfr KqhR grmkg RL16_SPIOG : 20- 23: grmkg KsyR gnhis RL16_SPIOG : 72- 73: rlfpd K--R vtlrp RL16_SPIOG : 98- 101: wvsvv KpgR ilyei RL16_SPIOL : 5- 6: mlsp K--R trfrk RL16_SPIOL : 5- 8: mlsp KrtR frkqh RL16_SPIOL : 11- 14: rtrfr KqhR grmkg RL16_SPIOL : 98- 101: wvavv KpgR ilyei RL16_THEMA : 8- 10: mprrv Ky-R kqqrg RL16_THEMA : 11- 14: rvkyr KqqR grmkg RL16_THEMA : 59- 60: mlrvm K--R sgkiw RL16_TOBAC : 5- 6: mlsp K--R trfrk RL16_TOBAC : 5- 8: mlsp KrtR frkqh RL16_TOBAC : 11- 14: rtrfr KqhR grmkg RL16_TOBAC : 98- 101: wvavv KpgR ilyem RL16_VIGUN : 13- 16: rtrfr KqhR grmkg RM16_ACACA : 50- 51: slkai K--R vikkk RM16_ACACA : 72- 74: wmltr Kp-R dvrmg RM16_ACACA : 132- 133: vkkyd K--R tdcik RM16_ACAPO : 31- 32: ikkyd K--R tdcik RM16_MAIZE : 37- 39: gshiv Ki-R rdvly RM16_MAIZE : 37- 40: gshiv KirR dvlyp RM16_MAIZE : 46- 47: dvlyp K--R tkysk RM16_MAIZE : 55- 57: yskys Kc-R csrgr RM16_MAIZE : 77- 80: grygt KssR agrls RM16_MARPO : 5- 6: mlyp K--R tkfrk RM16_MARPO : 8- 10: ypkrt Kf-R kyqkg RM16_MARPO : 14- 16: frkyq Kg-R ckgck RM16_MARPO : 57- 59: raisr Kf-R rnski RM16_MARPO : 57- 60: raisr KfrR nskiw RM16_ORYSA : 37- 39: gshiv Ki-R rdvly RM16_ORYSA : 37- 40: gshiv KirR dvlyp RM16_ORYSA : 46- 47: dvlyp K--R tkysk RM16_ORYSA : 55- 57: yskys Kc-R csrgc RM16_ORYSA : 77- 80: grygt KscR agrls RM16_PETHY : 23- 26: gfliv KkkR dvlyp RM16_PETHY : 24- 26: flivk Kk-R dvlyp RM16_PETHY : 25- 26: livkk K--R dvlyp RM16_PETHY : 32- 33: dvlyp K--R tkysk RM16_PETHY : 38- 40: rtkys Ky-R kgrcs RM16_PETHY : 41- 43: yskyr Kg-R csrgc RM16_PETHY : 63- 66: grygt KscR agrls RM16_PROWI : 8- 10: qpnnt Kf-R kfqks RM16_PROWI : 14- 16: frkfq Ks-R vkgvq RM16_PROWI : 57- 60: rvitr KfkR lgviw RM16_PROWI : 59- 60: itrkf K--R lgviw RM16_PROWI : 96- 99: qywvc KvkR gailf RM16_PROWI : 98- 99: wvckv K--R gailf RM16_PROWI : 128- 130: sklpi Kt-R fvmys RM16_YEAST : 53- 55: vqkkq Kg-R vpvrt RM16_YEAST : 159- 162: ddlhe KvaR eafrk RM16_YEAST : 227- 230: qepqy KlfR gr Number of patterns evaluated by Pratt:6 Total running time: 0 seconds