------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file RIBOSOMAL_L13 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L13.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: R13A_HUMAN 202 R13A_MOUSE 202 R13A_RAT 202 R13A_YEAST 198 RL13_ECOLI 142 RL13_HAEIN 142 RL13_HAESO 142 RL13_HALMA 145 RL13_MYCLE 147 RL13_SPIOL 250 RL13_STACA 145 RL13_SULAC 145 RP23_YEAST 25 Pratt run started at Thu Feb 6 21:05:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 13( 13) G-R-x(5)-A 2: 12.0102 24( 13) L-x-R-x(0,1)-L 3: 11.5102 23( 13) L-x(0,1)-G-x(1,2)-L 4: 11.5102 18( 13) A-x(3,4)-L-x(0,1)-G 5: 8.3401 21( 13) K-Q 6: 8.3401 33( 13) R-L 7: 8.3401 22( 13) R-x(5)-A 8: 8.3401 30( 13) L-G 9: 8.3401 24( 13) K-x(4)-G 10: 8.3401 26( 13) V-x(2)-A 11: 8.3401 20( 13) V-x(3)-A 12: 7.8401 26( 13) A-x(1,2)-Q 13: 7.8401 21( 13) I-x(1,2)-K 14: 7.8401 38( 13) K-x(2,3)-L 15: 7.8401 25( 13) I-x(2,3)-K 16: 7.8401 28( 13) V-x(1,2)-D 17: 7.8401 31( 13) V-x(0,1)-D 18: 7.8401 27( 13) V-x(2,3)-D 19: 7.8401 38( 13) V-x(3,4)-A 20: 7.8401 15( 13) P-x(2,3)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 38.1760 15( 13) V-x(1,2)-D-[AG]-x-[DGNPS]-x(2)-[LMV]-G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] B 2: 38.1760 17( 13) V-x(0,1)-D-[AG]-x-[DGNPS]-x(2)-[LMV]-G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] C 3: 22.4192 13( 13) G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] D 4: 18.5797 16( 13) L-G-[EKR]-x-[AGSV]-x(2)-[AILV]-[AG] E 5: 17.8392 16( 13) R-[LMV]-[AGSV]-x(2)-[AILV]-A-x(2)-[AILV] F 6: 14.2268 17( 13) V-[IV]-x-A-x(4)-[ILV] G 7: 13.9081 22( 13) L-[ADEGS]-R-x(0,1)-L H 8: 11.5102 23( 13) L-x(0,1)-G-x(1,2)-L I 9: 11.5102 18( 13) A-x(3,4)-L-x(0,1)-G J 10: 11.0056 16( 13) V-[AIV]-x(2)-A K 11: 10.0948 21( 13) V-x(3,4)-A-x-[DHKR] L 12: 10.0759 22( 13) A-x(1,2)-Q-[ILPV] M 13: 10.0467 13( 13) P-x(2,3)-I-x(3)-[ADTV] N 14: 8.3401 21( 13) K-Q O 15: 8.3401 33( 13) R-L P 16: 8.3401 24( 13) K-x(4)-G Q 17: 7.8401 21( 13) I-x(1,2)-K R 18: 7.8401 38( 13) K-x(2,3)-L S 19: 7.8401 25( 13) I-x(2,3)-K T 20: 7.8401 27( 13) V-x(2,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 38.1760 15( 13) V-x(1,2)-D-[AG]-x-[DGNPS]-x(2)-[LMV]-G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] Occurences: 15(13) R13A_HUMAN : 7- 26: evqvl Vl-DGrGhlLGRLAaiVAkqV llgrk R13A_MOUSE : 7- 26: egqvl Vl-DGrGhlLGRLAaiVAkqV llgrk R13A_RAT : 7- 26: egqvl Vl-DGrShlLGRLAaiVAkqV llgrk R13A_YEAST : 6- 26: svepv VviDGkGhlVGRLAsvVAkqL lngqk R13A_YEAST : 7- 26: vepvv Vi-DGkGhlVGRLAsvVAkqL lngqk RL13_ECOLI : 17- 36: krdwy Vv-DAtGktLGRLAteLArrL rgkhk RL13_HAEIN : 17- 36: krdwy Vv-DAtGktLGRLAteLArrL rgkhk RL13_HAESO : 17- 36: krdwy Vv-DAtGktLGRLGheLArrL rgkhk RL13_HALMA : 10- 30: efdad VivDArDciMGRVAsqVAeqA ldget RL13_MYCLE : 17- 36: tcswy Vi-DAtDvvLGRLAavAAtlL rgkhk RL13_SPIOL : 116- 135: dkkwy Vv-DAtDliLGRMAstIAihI rgknl RL13_STACA : 18- 37: erkwy Vi-DAaGqtLGRLSseVAsiL rgkhk RL13_SULAC : 8- 28: sqeei VivDAtNqiLGRMSthIAklL ksgkk RP23_YEAST : 5- 25: sqpv VviDAkDhhLGRLAstIAkqV RP23_YEAST : 6- 25: sqpvv Vi-DAkDhhLGRLAstIAkqV B 2: 38.1760 17( 13) V-x(0,1)-D-[AG]-x-[DGNPS]-x(2)-[LMV]-G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] Occurences: 17(13) R13A_HUMAN : 7- 26: evqvl VlDGrGhlLGRLAaiVAkqV llgrk R13A_MOUSE : 7- 26: egqvl VlDGrGhlLGRLAaiVAkqV llgrk R13A_RAT : 7- 26: egqvl VlDGrShlLGRLAaiVAkqV llgrk R13A_YEAST : 7- 26: vepvv ViDGkGhlVGRLAsvVAkqL lngqk RL13_ECOLI : 17- 36: krdwy VvDAtGktLGRLAteLArrL rgkhk RL13_ECOLI : 18- 36: rdwyv V-DAtGktLGRLAteLArrL rgkhk RL13_HAEIN : 17- 36: krdwy VvDAtGktLGRLAteLArrL rgkhk RL13_HAEIN : 18- 36: rdwyv V-DAtGktLGRLAteLArrL rgkhk RL13_HAESO : 17- 36: krdwy VvDAtGktLGRLGheLArrL rgkhk RL13_HAESO : 18- 36: rdwyv V-DAtGktLGRLGheLArrL rgkhk RL13_HALMA : 12- 30: dadvi V-DArDciMGRVAsqVAeqA ldget RL13_MYCLE : 17- 36: tcswy ViDAtDvvLGRLAavAAtlL rgkhk RL13_SPIOL : 116- 135: dkkwy VvDAtDliLGRMAstIAihI rgknl RL13_SPIOL : 117- 135: kkwyv V-DAtDliLGRMAstIAihI rgknl RL13_STACA : 18- 37: erkwy ViDAaGqtLGRLSseVAsiL rgkhk RL13_SULAC : 10- 28: eeivi V-DAtNqiLGRMSthIAklL ksgkk RP23_YEAST : 6- 25: sqpvv ViDAkDhhLGRLAstIAkqV C 3: 22.4192 13( 13) G-R-[LMV]-[AGS]-x(2)-[AILV]-A-x(2)-[AILV] Occurences: 13(13) R13A_HUMAN : 16- 26: rghll GRLAaiVAkqV llgrk R13A_MOUSE : 16- 26: rghll GRLAaiVAkqV llgrk R13A_RAT : 16- 26: rshll GRLAaiVAkqV llgrk R13A_YEAST : 16- 26: kghlv GRLAsvVAkqL lngqk RL13_ECOLI : 26- 36: tgktl GRLAteLArrL rgkhk RL13_HAEIN : 26- 36: tgktl GRLAteLArrL rgkhk RL13_HAESO : 26- 36: tgktl GRLGheLArrL rgkhk RL13_HALMA : 20- 30: rdcim GRVAsqVAeqA ldget RL13_MYCLE : 26- 36: tdvvl GRLAavAAtlL rgkhk RL13_SPIOL : 125- 135: tdlil GRMAstIAihI rgknl RL13_STACA : 27- 37: agqtl GRLSseVAsiL rgkhk RL13_SULAC : 18- 28: tnqil GRMSthIAklL ksgkk RP23_YEAST : 15- 25: kdhhl GRLAstIAkqV D 4: 18.5797 16( 13) L-G-[EKR]-x-[AGSV]-x(2)-[AILV]-[AG] Occurences: 16(13) R13A_HUMAN : 15- 23: grghl LGRlAaiVA kqvll R13A_HUMAN : 137- 145: rkfay LGRlAheVG wkyqa R13A_MOUSE : 15- 23: grghl LGRlAaiVA kqvll R13A_MOUSE : 137- 145: rkfay LGRlAheVG wkyqa R13A_RAT : 15- 23: grshl LGRlAaiVA kqvll R13A_RAT : 137- 145: rkfay LGRlAheVG wkyqa R13A_YEAST : 137- 145: rkytt LGKlStsVG wkyed RL13_ECOLI : 25- 33: atgkt LGRlAteLA rrlrg RL13_HAEIN : 25- 33: atgkt LGRlAteLA rrlrg RL13_HAESO : 25- 33: atgkt LGRlGheLA rrlrg RL13_HALMA : 132- 140: ikfvt LGEiSetLG anktw RL13_MYCLE : 25- 33: atdvv LGRlAavAA tllrg RL13_SPIOL : 124- 132: atdli LGRmAstIA ihirg RL13_STACA : 26- 34: aagqt LGRlSseVA silrg RL13_SULAC : 17- 25: atnqi LGRmSthIA kllks RP23_YEAST : 14- 22: akdhh LGRlAstIA kqv E 5: 17.8392 16( 13) R-[LMV]-[AGSV]-x(2)-[AILV]-A-x(2)-[AILV] Occurences: 16(13) R13A_HUMAN : 17- 26: ghllg RLAaiVAkqV llgrk R13A_HUMAN : 116- 125: ydkkk RMVvpAAlkV vrlkp R13A_MOUSE : 17- 26: ghllg RLAaiVAkqV llgrk R13A_MOUSE : 116- 125: ydkkk RMVvpAAlkV vrlkp R13A_RAT : 17- 26: shllg RLAaiVAkqV llgrk R13A_RAT : 116- 125: ydkkk RMVvpAAlkV vrlkp R13A_YEAST : 17- 26: ghlvg RLAsvVAkqL lngqk RL13_ECOLI : 27- 36: gktlg RLAteLArrL rgkhk RL13_HAEIN : 27- 36: gktlg RLAteLArrL rgkhk RL13_HAESO : 27- 36: gktlg RLGheLArrL rgkhk RL13_HALMA : 21- 30: dcimg RVAsqVAeqA ldget RL13_MYCLE : 27- 36: dvvlg RLAavAAtlL rgkhk RL13_SPIOL : 126- 135: dlilg RMAstIAihI rgknl RL13_STACA : 28- 37: gqtlg RLSseVAsiL rgkhk RL13_SULAC : 19- 28: nqilg RMSthIAklL ksgkk RP23_YEAST : 16- 25: dhhlg RLAstIAkqV F 6: 14.2268 17( 13) V-[IV]-x-A-x(4)-[ILV] Occurences: 17(13) R13A_HUMAN : 118- 126: kkkrm VVpAalkvV rlkpt R13A_MOUSE : 118- 126: kkkrm VVpAalkvV rlkpt R13A_RAT : 118- 126: kkkrm VVpAalkvV rlkpt R13A_YEAST : 34- 42: gqkiv VVrAeelnI sgeff RL13_ECOLI : 17- 25: krdwy VVdAtgktL grlat RL13_HAEIN : 17- 25: krdwy VVdAtgktL grlat RL13_HAEIN : 56- 64: gdyii VInAdkvaV tgrke RL13_HAESO : 17- 25: krdwy VVdAtgktL grlgh RL13_HAESO : 56- 64: gdyiv VInAekvaV tgnke RL13_HALMA : 38- 46: getva VVnAeravI tgree RL13_MYCLE : 17- 25: tcswy VIdAtdvvL grlaa RL13_MYCLE : 56- 64: gdfvi VInAdkvaI sgdkv RL13_SPIOL : 116- 124: dkkwy VVdAtdliL grmas RL13_SPIOL : 155- 163: gafvi VVnAdkvaV sgkkr RL13_STACA : 18- 26: erkwy VIdAagqtL grlss RL13_SULAC : 36- 44: gkkvy VVnAekaiI sgprs RP23_YEAST : 6- 14: sqpvv VIdAkdhhL grlas G 7: 13.9081 22( 13) L-[ADEGS]-R-x(0,1)-L Occurences: 22(13) R13A_HUMAN : 15- 18: grghl LGR-L aaiva R13A_HUMAN : 98- 101: rgqaa LDR-L kvfdg R13A_HUMAN : 137- 140: rkfay LGR-L ahevg R13A_MOUSE : 15- 18: grghl LGR-L aaiva R13A_MOUSE : 98- 101: rgqaa LER-L kvldg R13A_MOUSE : 137- 140: rkfay LGR-L ahevg R13A_RAT : 15- 18: grshl LGR-L aaiva R13A_RAT : 98- 101: rgqaa LER-L kvldg R13A_RAT : 137- 140: rkfay LGR-L ahevg R13A_YEAST : 98- 101: rgkaa LER-L kvfeg RL13_ECOLI : 25- 28: atgkt LGR-L atela RL13_ECOLI : 32- 36: rlate LARrL rgkhk RL13_HAEIN : 25- 28: atgkt LGR-L atela RL13_HAEIN : 32- 36: rlate LARrL rgkhk RL13_HAESO : 25- 28: atgkt LGR-L ghela RL13_HAESO : 32- 36: rlghe LARrL rgkhk RL13_HALMA : 121- 124: ldgts LDR-L snikf RL13_MYCLE : 25- 28: atdvv LGR-L aavaa RL13_SPIOL : 213- 217: lpkgr LGRyL fnhlk RL13_STACA : 26- 29: aagqt LGR-L sseva RL13_SULAC : 136- 139: itvae LSR-L lgglk RL13_SULAC : 136- 140: itvae LSRlL gglkq RP23_YEAST : 14- 17: akdhh LGR-L astia H 8: 11.5102 23( 13) L-x(0,1)-G-x(1,2)-L Occurences: 23(13) R13A_HUMAN : 14- 18: dgrgh LlGr-L aaiva R13A_HUMAN : 15- 18: grghl L-Gr-L aaiva R13A_HUMAN : 137- 140: rkfay L-Gr-L ahevg R13A_MOUSE : 14- 18: dgrgh LlGr-L aaiva R13A_MOUSE : 15- 18: grghl L-Gr-L aaiva R13A_MOUSE : 137- 140: rkfay L-Gr-L ahevg R13A_RAT : 14- 18: dgrsh LlGr-L aaiva R13A_RAT : 15- 18: grshl L-Gr-L aaiva R13A_RAT : 137- 140: rkfay L-Gr-L ahevg R13A_YEAST : 14- 18: dgkgh LvGr-L asvva R13A_YEAST : 137- 140: rkytt L-Gk-L stsvg RL13_ECOLI : 25- 28: atgkt L-Gr-L atela RL13_HAEIN : 25- 28: atgkt L-Gr-L atela RL13_HAESO : 25- 28: atgkt L-Gr-L ghela RL13_HAESO : 28- 32: ktlgr L-GheL arrlr RL13_HALMA : 116- 121: edgev LdGtsL drlsn RL13_MYCLE : 25- 28: atdvv L-Gr-L aavaa RL13_SPIOL : 213- 217: lpkgr L-GryL fnhlk RL13_STACA : 26- 29: aagqt L-Gr-L sseva RL13_SULAC : 52- 57: prsrv LeGysL lftvk RL13_SULAC : 139- 143: aelsr LlGg-L kq RL13_SULAC : 140- 143: elsrl L-Gg-L kq RP23_YEAST : 14- 17: akdhh L-Gr-L astia I 9: 11.5102 18( 13) A-x(3,4)-L-x(0,1)-G Occurences: 18(13) R13A_HUMAN : 23- 29: laaiv AkqvlL-G rkvvv R13A_HUMAN : 23- 29: laaiv Akqv-LlG rkvvv R13A_MOUSE : 23- 29: laaiv AkqvlL-G rkvvv R13A_MOUSE : 23- 29: laaiv Akqv-LlG rkvvv R13A_RAT : 23- 29: laaiv AkqvlL-G rkvvv R13A_RAT : 23- 29: laaiv Akqv-LlG rkvvv R13A_YEAST : 23- 29: lasvv Akql-LnG qkivv RL13_ECOLI : 20- 26: wyvvd AtgktL-G rlate RL13_HAEIN : 20- 26: wyvvd AtgktL-G rlate RL13_HAESO : 20- 26: wyvvd AtgktL-G rlghe RL13_HALMA : 27- 33: vasqv Aeqa-LdG etvav RL13_MYCLE : 20- 26: wyvid AtdvvL-G rlaav RL13_MYCLE : 32- 38: rlaav Aatl-LrG khkpt RL13_SPIOL : 119- 125: wyvvd AtdliL-G rmast RL13_STACA : 21- 27: wyvid AagqtL-G rlsse RL13_STACA : 22- 27: yvida Agqt-L-G rlsse RL13_SULAC : 12- 18: ivivd AtnqiL-G rmsth RL13_SULAC : 105- 112: yrnlk AyigiLeG ksmir RL13_SULAC : 121- 128: irfdd AdvsrLkG kyitv RL13_SULAC : 134- 141: kyitv AelsrLlG glkq RP23_YEAST : 9- 15: vvvid AkdhhL-G rlast J 10: 11.0056 16( 13) V-[AIV]-x(2)-A Occurences: 16(13) R13A_HUMAN : 118- 122: kkkrm VVpaA lkvvr R13A_MOUSE : 118- 122: kkkrm VVpaA lkvvr R13A_RAT : 118- 122: kkkrm VVpaA lkvvr R13A_YEAST : 33- 37: ngqki VVvrA eelni R13A_YEAST : 118- 122: kkkrv VVpqA lrvlr RL13_ECOLI : 100- 104: rrper VIeiA vkgml RL13_HAEIN : 100- 104: rrpea VIeiA vkgml RL13_HAESO : 55- 59: tgdyi VVinA ekvav RL13_HAESO : 100- 104: rrpea VIeiA vkgml RL13_HALMA : 10- 14: efdad VIvdA rdcim RL13_HALMA : 26- 30: rvasq VAeqA ldget RL13_MYCLE : 100- 104: khpdr VVekA ivgml RL13_SPIOL : 43- 47: tvaaa VAvsA rksts RL13_STACA : 18- 22: erkwy VIdaA gqtlg RL13_SULAC : 8- 12: sqeei VIvdA tnqil RP23_YEAST : 5- 9: sqpv VVidA kdhhl K 11: 10.0948 21( 13) V-x(3,4)-A-x-[DHKR] Occurences: 21(13) R13A_HUMAN : 118- 124: kkkrm Vvpa-AlK vvrlk R13A_MOUSE : 118- 124: kkkrm Vvpa-AlK vvrlk R13A_RAT : 118- 124: kkkrm Vvpa-AlK vvrlk R13A_YEAST : 117- 124: dkkkr VvvpqAlR vlrlk R13A_YEAST : 118- 124: kkkrv Vvpq-AlR vlrlk R13A_YEAST : 152- 159: kyedv VakleAkR kvssa RL13_ECOLI : 100- 106: rrper Viei-AvK gmlpk RL13_HAEIN : 100- 106: rrpea Viei-AvK gmlpk RL13_HAESO : 55- 61: tgdyi Vvin-AeK vavtg RL13_HAESO : 100- 106: rrpea Viei-AvK gmlpk RL13_HALMA : 10- 16: efdad Vivd-ArD cimgr RL13_HALMA : 26- 32: rvasq Vaeq-AlD getva RL13_HALMA : 36- 43: ldget VavvnAeR avitg RL13_MYCLE : 54- 61: dggdf VivinAdK vaisg RL13_SPIOL : 43- 49: tvaaa Vavs-ArK stsas RL13_SPIOL : 153- 160: dmgaf VivvnAdK vavsg RL13_SPIOL : 223- 229: fnhlk Vykg-AeH phqaq RL13_STACA : 125- 131: gkklf Vygg-AeH phaaq RL13_SULAC : 34- 41: ksgkk VyvvnAeK aiisg RP23_YEAST : 4- 11: sqp VvvidAkD hhlgr RP23_YEAST : 5- 11: sqpv Vvid-AkD hhlgr L 12: 10.0759 22( 13) A-x(1,2)-Q-[ILPV] Occurences: 22(13) R13A_HUMAN : 1- 5: AevQV lvldg R13A_HUMAN : 23- 26: laaiv Ak-QV llgrk R13A_MOUSE : 1- 5: AegQV lvldg R13A_MOUSE : 23- 26: laaiv Ak-QV llgrk R13A_RAT : 1- 5: AegQV lvldg R13A_RAT : 23- 26: laaiv Ak-QV llgrk R13A_YEAST : 23- 26: lasvv Ak-QL lngqk R13A_YEAST : 190- 193: aesdv Ak-QL aalgy RL13_ECOLI : 133- 137: nehnh AaqQP qvldi RL13_ECOLI : 134- 137: ehnha Aq-QP qvldi RL13_HAEIN : 133- 137: gehqh AaqQP qvldi RL13_HAEIN : 134- 137: ehqha Aq-QP qvldi RL13_HAESO : 133- 137: sehnh AaqQP qvldi RL13_HAESO : 134- 137: ehnha Aq-QP qvldi RL13_HALMA : 23- 26: imgrv As-QV aeqal RL13_MYCLE : 134- 137: dhphs Aq-QP vpfei RL13_SPIOL : 233- 236: ehphq Aq-QP idlpl RL13_STACA : 60- 63: viiin Ag-QI emtgk RL13_STACA : 134- 138: aehph AaqQP enyel RL13_STACA : 135- 138: ehpha Aq-QP enyel RL13_SULAC : 12- 16: ivivd AtnQI lgrms RP23_YEAST : 22- 25: lasti Ak-QV M 13: 10.0467 13( 13) P-x(2,3)-I-x(3)-[ADTV] Occurences: 13(13) R13A_HUMAN : 75- 82: yhfra Psr-IfwrT vrgml R13A_MOUSE : 75- 82: yhfra Psr-IfwrT vrgml R13A_RAT : 75- 82: yhfra Psr-IfwrT vrgml R13A_YEAST : 75- 82: fhfra Psr-IfykA lrgmv RL13_ECOLI : 97- 105: miarr PervIeiaV kgmlp RL13_HAEIN : 97- 105: miarr PeavIeiaV kgmlp RL13_HAESO : 97- 105: miarr PeavIeiaV kgmlp RL13_HALMA : 75- 82: fypkr Pdg-IfkrT irgml RL13_MYCLE : 139- 146: aqqpv Pfe-IkqvA q RL13_SPIOL : 196- 203: lqkri Per-IiehA vrgml RL13_SPIOL : 196- 204: lqkri PeriIehaV rgmlp RL13_STACA : 82- 89: rhsny Pgg-IksiT agelr RL13_SULAC : 78- 85: rrprn Pin-IvkrT vrgml RP23_YEAST : 3- 11: sq PvvvIdakD hhlgr N 14: 8.3401 21( 13) K-Q Occurences: 21(13) R13A_HUMAN : 24- 25: aaiva KQ vllgr R13A_HUMAN : 171- 172: hyrkk KQ lmrlr R13A_HUMAN : 178- 179: lmrlr KQ aeknv R13A_MOUSE : 24- 25: aaiva KQ vllgr R13A_MOUSE : 171- 172: hyrkk KQ ilrlr R13A_MOUSE : 178- 179: ilrlr KQ aeknv R13A_RAT : 24- 25: aaiva KQ vllgr R13A_RAT : 171- 172: hyrkk KQ llrlr R13A_RAT : 178- 179: llrlr KQ aeknv R13A_YEAST : 24- 25: asvva KQ llngq R13A_YEAST : 191- 192: esdva KQ laalg RL13_ECOLI : 85- 86: higgi KQ atfee RL13_HAEIN : 85- 86: yvggi KQ atfke RL13_HAESO : 85- 86: yvggi KQ atfke RL13_HALMA : 91- 92: mlphk KQ rgrea RL13_MYCLE : 143- 144: vpfei KQ vaq RL13_SPIOL : 27- 28: fgtnv KQ tpvls RL13_STACA : 118- 119: srlge KQ gkklf RL13_SULAC : 97- 98: knklg KQ iyrnl RL13_SULAC : 144- 145: llggl KQ RP23_YEAST : 23- 24: astia KQ v O 15: 8.3401 33( 13) R-L Occurences: 33(13) R13A_HUMAN : 17- 18: ghllg RL aaiva R13A_HUMAN : 100- 101: qaald RL kvfdg R13A_HUMAN : 127- 128: alkvv RL kptrk R13A_HUMAN : 139- 140: faylg RL ahevg R13A_HUMAN : 175- 176: kkqlm RL rkqae R13A_MOUSE : 17- 18: ghllg RL aaiva R13A_MOUSE : 100- 101: qaale RL kvldg R13A_MOUSE : 127- 128: alkvv RL kptrk R13A_MOUSE : 139- 140: faylg RL ahevg R13A_MOUSE : 175- 176: kkqil RL rkqae R13A_RAT : 17- 18: shllg RL aaiva R13A_RAT : 100- 101: qaale RL kvldg R13A_RAT : 127- 128: alkvv RL kptrk R13A_RAT : 139- 140: faylg RL ahevg R13A_RAT : 175- 176: kkqll RL rkqae R13A_YEAST : 17- 18: ghlvg RL asvva R13A_YEAST : 100- 101: kaale RL kvfeg R13A_YEAST : 127- 128: alrvl RL kpgrk RL13_ECOLI : 27- 28: gktlg RL atela RL13_ECOLI : 35- 36: telar RL rgkhk RL13_HAEIN : 27- 28: gktlg RL atela RL13_HAEIN : 35- 36: telar RL rgkhk RL13_HAESO : 27- 28: gktlg RL ghela RL13_HAESO : 35- 36: helar RL rgkhk RL13_HALMA : 123- 124: gtsld RL snikf RL13_MYCLE : 27- 28: dvvlg RL aavaa RL13_SPIOL : 212- 213: mlpkg RL grylf RL13_STACA : 28- 29: gqtlg RL sseva RL13_STACA : 100- 101: eknpe RL leisi RL13_STACA : 114- 115: mlpss RL gekqg RL13_SULAC : 125- 126: dadvs RL kgkyi RL13_SULAC : 138- 139: vaels RL lgglk RP23_YEAST : 16- 17: dhhlg RL astia P 16: 8.3401 24( 13) K-x(4)-G Occurences: 24(13) R13A_HUMAN : 24- 29: aaiva KqvllG rkvvv R13A_HUMAN : 133- 138: lkptr KfaylG rlahe R13A_MOUSE : 24- 29: aaiva KqvllG rkvvv R13A_MOUSE : 133- 138: lkptr KfaylG rlahe R13A_RAT : 24- 29: aaiva KqvllG rkvvv R13A_RAT : 133- 138: lkptr KfaylG rlahe R13A_YEAST : 11- 16: vvidg KghlvG rlasv R13A_YEAST : 24- 29: asvva KqllnG qkivv R13A_YEAST : 133- 138: lkpgr KyttlG klsts RL13_ECOLI : 61- 66: vlnad KvavtG nkrtd RL13_HAEIN : 61- 66: vinad KvavtG rketd RL13_HAEIN : 123- 128: mfrkl KvyagG ehqha RL13_HAESO : 61- 66: vinae KvavtG nketd RL13_HALMA : 59- 64: vekye KrvdiG ndngy RL13_HALMA : 80- 85: pdgif KrtirG mlphk RL13_HALMA : 128- 133: rlsni KfvtlG eiset RL13_MYCLE : 61- 66: vinad KvaisG dkvqh RL13_SPIOL : 160- 165: vvnad KvavsG kkrtq RL13_STACA : 86- 91: ypggi KsitaG elrek RL13_STACA : 122- 127: ekqgk KlfvyG gaehp RL13_SULAC : 26- 31: sthia KllksG kkvyv RL13_SULAC : 41- 46: vvnae KaiisG prsrv RL13_SULAC : 83- 88: piniv KrtvrG mlpkn RP23_YEAST : 10- 15: vvida KdhhlG rlast Q 17: 7.8401 21( 13) I-x(1,2)-K Occurences: 21(13) R13A_HUMAN : 21- 24: grlaa IvaK qvllg R13A_HUMAN : 188- 190: nvekk Id-K ytevl R13A_MOUSE : 21- 24: grlaa IvaK qvllg R13A_MOUSE : 188- 190: nvekk Ic-K ftevl R13A_RAT : 21- 24: grlaa IvaK qvllg R13A_RAT : 188- 190: nvekk Ic-K ftevl R13A_YEAST : 8- 11: epvvv IdgK ghlvg R13A_YEAST : 78- 81: rapsr IfyK alrgm RL13_ECOLI : 103- 106: ervie IavK gmlpk RL13_HAEIN : 103- 106: eavie IavK gmlpk RL13_HAESO : 103- 106: eavie IavK gmlpk RL13_HALMA : 53- 56: greeq IveK yekrv RL13_HALMA : 78- 80: krpdg If-K rtirg RL13_MYCLE : 118- 121: klsrq IqrK lrvya RL13_SPIOL : 135- 138: tiaih IrgK nlasy RL13_STACA : 12- 15: anesn IerK wyvid RL13_STACA : 104- 107: erlle IsiK gmlps RL13_SULAC : 24- 26: rmsth Ia-K llksg RL13_SULAC : 81- 83: rnpin Iv-K rtvrg RP23_YEAST : 7- 10: qpvvv IdaK dhhlg RP23_YEAST : 21- 23: rlast Ia-K qv R 18: 7.8401 38( 13) K-x(2,3)-L Occurences: 38(13) R13A_HUMAN : 24- 27: aaiva Kqv-L lgrkv R13A_HUMAN : 24- 28: aaiva KqvlL grkvv R13A_HUMAN : 50- 54: nfyrn KlkyL aflrk R13A_HUMAN : 124- 128: vpaal KvvrL kptrk R13A_HUMAN : 133- 137: lkptr KfayL grlah R13A_HUMAN : 169- 173: kihyr KkkqL mrlrk R13A_HUMAN : 170- 173: ihyrk Kkq-L mrlrk R13A_HUMAN : 196- 200: ytevl KthgL lv R13A_MOUSE : 24- 27: aaiva Kqv-L lgrkv R13A_MOUSE : 24- 28: aaiva KqvlL grkvv R13A_MOUSE : 50- 54: nfyrn KlkyL aflrk R13A_MOUSE : 124- 128: vpaal KvvrL kptrk R13A_MOUSE : 133- 137: lkptr KfayL grlah R13A_MOUSE : 170- 174: mhyrk KkqiL rlrkq R13A_MOUSE : 171- 174: hyrkk Kqi-L rlrkq R13A_MOUSE : 196- 200: ftevl KtngL lv R13A_RAT : 24- 27: aaiva Kqv-L lgrkv R13A_RAT : 24- 28: aaiva KqvlL grkvv R13A_RAT : 50- 54: nfyrn KlkyL aflrk R13A_RAT : 124- 128: vpaal KvvrL kptrk R13A_RAT : 133- 137: lkptr KfayL grlah R13A_RAT : 169- 173: kihyr KkkqL lrlrk R13A_RAT : 170- 173: ihyrk Kkq-L lrlrk R13A_RAT : 170- 174: ihyrk KkqlL rlrkq R13A_RAT : 171- 174: hyrkk Kql-L rlrkq R13A_RAT : 196- 200: ftevl KtngL lv R13A_YEAST : 11- 14: vvidg Kgh-L vgrla R13A_YEAST : 24- 27: asvva Kql-L ngqki R13A_YEAST : 95- 98: ktarg Kaa-L erlkv R13A_YEAST : 133- 137: lkpgr KyttL gklst RL13_ECOLI : 106- 109: ieiav Kgm-L pkgpl RL13_ECOLI : 111- 114: kgmlp Kgp-L gramf RL13_HAEIN : 106- 109: ieiav Kgm-L pkgpl RL13_HAEIN : 111- 114: kgmlp Kgp-L gramf RL13_HAESO : 106- 109: ieiav Kgm-L pkgpl RL13_HAESO : 111- 114: kgmlp Kgp-L gramf RL13_HALMA : 128- 132: rlsni KfvtL geise RL13_MYCLE : 111- 114: vgmlp Knk-L srqiq RL13_SPIOL : 210- 213: rgmlp Kgr-L grylf RL13_STACA : 107- 110: leisi Kgm-L pssrl RL13_SULAC : 92- 95: rgmlp Knk-L gkqiy RP23_YEAST : 10- 14: vvida KdhhL grlas S 19: 7.8401 25( 13) I-x(2,3)-K Occurences: 25(13) R13A_HUMAN : 21- 24: grlaa Iva-K qvllg R13A_HUMAN : 165- 169: kekak IhyrK kkqlm R13A_MOUSE : 21- 24: grlaa Iva-K qvllg R13A_RAT : 21- 24: grlaa Iva-K qvllg R13A_RAT : 165- 169: kekak IhyrK kkqll R13A_YEAST : 8- 11: epvvv Idg-K ghlvg R13A_YEAST : 78- 81: rapsr Ify-K alrgm RL13_ECOLI : 81- 85: hhtgh IggiK qatfe RL13_ECOLI : 103- 106: ervie Iav-K gmlpk RL13_HAEIN : 57- 61: dyiiv InadK vavtg RL13_HAEIN : 103- 106: eavie Iav-K gmlpk RL13_HAESO : 57- 61: dyivv InaeK vavtg RL13_HAESO : 103- 106: eavie Iav-K gmlpk RL13_HALMA : 53- 56: greeq Ive-K yekrv RL13_MYCLE : 57- 61: dfviv InadK vaisg RL13_MYCLE : 64- 68: adkva IsgdK vqhkm RL13_MYCLE : 118- 121: klsrq Iqr-K lrvya RL13_SPIOL : 135- 138: tiaih Irg-K nlasy RL13_SPIOL : 246- 250: lrdkr IrveK RL13_STACA : 12- 15: anesn Ier-K wyvid RL13_STACA : 36- 40: sevas IlrgK hkaty RL13_STACA : 104- 107: erlle Isi-K gmlps RL13_SULAC : 79- 83: rprnp InivK rtvrg RL13_SULAC : 109- 113: kayig IlegK smirf RP23_YEAST : 7- 10: qpvvv Ida-K dhhlg T 20: 7.8401 27( 13) V-x(2,3)-D Occurences: 27(13) R13A_HUMAN : 5- 9: aevq VlvlD grghl R13A_MOUSE : 5- 9: aegq VlvlD grghl R13A_RAT : 5- 9: aegq VlvlD grshl R13A_YEAST : 5- 9: svep VvviD gkghl R13A_YEAST : 6- 9: svepv Vvi-D gkghl RL13_ECOLI : 11- 14: akpet Vkr-D wyvvd RL13_ECOLI : 48- 52: eytph VdtgD yiivl RL13_ECOLI : 56- 60: gdyii VlnaD kvavt RL13_HAEIN : 11- 14: akpet Vkr-D wyvvd RL13_HAEIN : 48- 52: eytph VdtgD yiivi RL13_HAEIN : 56- 60: gdyii VinaD kvavt RL13_HAESO : 11- 14: akpet Vkr-D wyvvd RL13_HAESO : 48- 52: eytph VdtgD yivvi RL13_HALMA : 3- 7: ms VaefD adviv RL13_HALMA : 10- 13: efdad Viv-D ardci RL13_HALMA : 12- 16: dadvi VdarD cimgr RL13_MYCLE : 48- 52: tfapn VdggD fvivi RL13_MYCLE : 56- 60: gdfvi VinaD kvais RL13_SPIOL : 77- 80: faiph Vpl-D qrwmf RL13_SPIOL : 108- 111: ksadh Vpt-D kkwyv RL13_SPIOL : 117- 121: kkwyv VdatD lilgr RL13_SPIOL : 155- 159: gafvi VvnaD kvavs RL13_SPIOL : 156- 159: afviv Vna-D kvavs RL13_STACA : 49- 53: tytph VdsgD yviii RL13_SULAC : 8- 11: sqeei Viv-D atnqi RP23_YEAST : 4- 8: sqp VvviD akdhh RP23_YEAST : 5- 8: sqpv Vvi-D akdhh Number of patterns evaluated by Pratt:83 Total running time: 1 seconds