------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file RIBOSOMAL_L11 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L11.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL11_BACSU 140 RL11_CGDAB 141 RL11_ECOLI 141 RL11_HAEIN 141 RL11_HALCU 162 RL11_HALMA 161 RL11_HALVO 158 RL11_PROVU 141 RL11_SERMA 141 RL11_SPIOL 224 RL11_STACA 139 RL11_STRGR 144 RL11_STRSQ 144 RL11_STRVG 144 RL11_SULSO 170 RL11_SYNY3 141 RL11_THEMA 141 RL11_THETH 147 RL12_HUMAN 165 RL12_MOUSE 165 RL12_RAT 165 RL12_YEAST 165 YKAE_CAEEL 195 Pratt run started at Thu Feb 6 21:05:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 23( 23) A-x(4)-P-x-G-x(0,2)-P 2: 15.6802 26( 23) A-x(4,5)-P-x(1,2)-G-P 3: 15.1802 44( 23) P-x(0,2)-G-P-x(1,2)-G 4: 15.1802 33( 23) A-x(0,1)-P-x(2,4)-G-P 5: 15.1802 35( 23) A-x(1,3)-P-x(1,2)-G-P 6: 12.5102 26( 23) P-x(2)-G-P 7: 12.5102 23( 23) A-x(3)-P-P 8: 12.0102 26( 23) G-P-x(1,2)-G 9: 12.0102 45( 23) P-x(1,2)-G-P 10: 12.0102 23( 23) P-P-x(2,3)-P 11: 11.5102 36( 23) A-x(0,2)-G-x(3)-G 12: 11.5102 35( 23) A-x(1,2)-G-x(2,3)-G 13: 11.5102 35( 23) A-x(1,3)-G-x(3)-G 14: 11.5102 24( 23) P-P-x(1,3)-P 15: 11.5102 24( 23) P-x-G-x(0,2)-P 16: 11.5102 41( 23) P-x(0,1)-P-x(2,3)-P 17: 11.5102 58( 23) P-x(2,3)-P-x(1,2)-G 18: 11.5102 39( 23) A-x(4)-P-x(2,4)-P 19: 11.5102 39( 23) A-x(3,4)-P-x(0,1)-P 20: 11.0102 33( 23) A-x(2,3)-G-x(2,4)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.4661 23( 23) A-x(3)-[GP]-P-[LV]-G-x(0,2)-P-x(2)-[GSV]-x(2)-[DGP]-[AILV]-[ADNP]-x(2)-[ADEGNT] B 2: 30.8959 26( 23) A-x(4,5)-P-x(1,2)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] C 3: 30.3959 33( 23) A-x(0,1)-P-x(2,4)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] D 4: 30.3959 35( 23) A-x(1,3)-P-x(1,2)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] E 5: 29.9678 23( 23) P-x-[ILV]-G-P-x-[GILP]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] F 6: 27.0036 23( 23) A-x(2)-[AEGS]-P-P-x-[DG]-x(3)-[DGQS]-x(2)-[GIPV]-x(4)-[ADEGN]-[FIV] G 7: 26.8060 42( 23) P-x(1,2)-G-P-x-[GILP]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] H 8: 26.0718 23( 23) P-[LV]-G-x(0,2)-P-x(2)-[GSV]-x(2)-[DGP]-[AILV]-[ADNP]-x(2)-[ADEGNT] I 9: 20.4676 41( 23) P-x(0,2)-G-P-x(1,2)-G-x(2)-[GLP]-x(2)-[ILV] J 10: 17.2976 23( 23) G-P-x(1,2)-G-x(2)-[GLP]-x(2)-[ILV] K 11: 16.3749 43( 23) P-x(2,3)-P-x(1,2)-G-x(2)-[GLP]-x(2)-[AILV] L 12: 16.1327 23( 23) P-P-x(2,3)-P-[AENQT]-x(4)-[GLPV] M 13: 15.6327 23( 23) P-P-x(1,3)-P-[AENQT]-x(4)-[GLPV] N 14: 15.6327 41( 23) P-x(0,1)-P-x(2,3)-P-[AENQT]-x(4)-[GLPV] O 15: 14.1780 33( 23) A-x(3)-[GNP]-P-x(2,4)-P P 16: 14.1427 39( 23) A-x(3,4)-P-x(0,1)-P-x-[DGV] Q 17: 11.5102 26( 23) A-x(4,5)-P-x(1,2)-G R 18: 11.5102 36( 23) A-x(0,2)-G-x(3)-G S 19: 11.5102 35( 23) A-x(1,2)-G-x(2,3)-G T 20: 11.5102 35( 23) A-x(1,3)-G-x(3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.4661 23( 23) A-x(3)-[GP]-P-[LV]-G-x(0,2)-P-x(2)-[GSV]-x(2)-[DGP]-[AILV]-[ADNP]-x(2)-[ADEGNT] Occurences: 23(23) RL11_BACSU : 17- 36: ipagk AnpaPPVG--PalGqaGVNvmG fckef RL11_CGDAB : 17- 36: iesgs AkpsPPVG--PaiGqaGIPimA fckaf RL11_ECOLI : 17- 36: vaagm AnpsPPVG--PalGqqGVNimE fckaf RL11_HAEIN : 17- 36: vaagm AnpsPPVG--PalGqqGVNimE fckaf RL11_HALCU : 13- 32: vaggq AdpgPPLG--PelGptPVDvqA vvqei RL11_HALMA : 13- 32: vpgge AnpgPPLG--PelGptPVDvqA vvqei RL11_HALVO : 13- 32: vpggk AnpgPPLG--PelGptPVDvqD vvndi RL11_PROVU : 17- 36: vsagm AnpsPPVG--PalGqqGVNimE fckaf RL11_SERMA : 17- 36: vaagm AnpsPPVG--PalGqqGVNimE fckaf RL11_SPIOL : 89- 108: leagk AtpaPPVG--PalGskGVNimA fckdy RL11_STACA : 17- 36: ipagk AnpaPPVG--PalGqaGVNimG fckef RL11_STRGR : 21- 40: inaga AnpaPPVG--PalGqhGVNimE fckay RL11_STRSQ : 21- 40: ikaga AnpaPPVG--PalGqhGVNimE fckay RL11_STRVG : 21- 40: ikaga AnpaPPVG--PalGqhGVNimE fckay RL11_SULSO : 15- 34: veggs AkpgPPLG--PtlSqlGLNvqE vvkki RL11_SYNY3 : 18- 37: lpagk AnpaPPVG--PalGqhGVNimA fckey RL11_THEMA : 18- 37: lpagk AtpaPPVG--PalGqhGVNimE fckrf RL11_THETH : 17- 36: lpagk AtpaPPVG--PalGqhGANimE fvkaf RL12_HUMAN : 29- 50: atsal ApkiGPLGlsPkkVgdDIAkaT gdwkg RL12_MOUSE : 29- 50: atsal ApkiGPLGlsPkkVgdDIAkaT gdwkg RL12_RAT : 29- 50: atsal ApkiGPLGlsPkkVgdDIAkaT gdwkg RL12_YEAST : 29- 50: asaal ApkiGPLGlsPkkVgeDIAkaT kefkg YKAE_CAEEL : 32- 51: ikaqm AsaaPPLG--PqlGqrGLNvaN fckef B 2: 30.8959 26( 23) A-x(4,5)-P-x(1,2)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] Occurences: 26(23) RL11_BACSU : 17- 38: ipagk Anpap-Pv-GPaLgQagvnVmGFC kefna RL11_CGDAB : 17- 38: iesgs Akpsp-Pv-GPaIgQagipImAFC kafna RL11_ECOLI : 17- 38: vaagm Anpsp-Pv-GPaLgQqgvnImEFC kafna RL11_HAEIN : 17- 38: vaagm Anpsp-Pv-GPaLgQqgvnImEFC kafna RL11_HALCU : 13- 34: vaggq Adpgp-Pl-GPeLgPtpvdVqAVV qeind RL11_HALMA : 13- 34: vpgge Anpgp-Pl-GPeLgPtpvdVqAVV qeind RL11_HALVO : 13- 34: vpggk Anpgp-Pl-GPeLgPtpvdVqDVV ndind RL11_PROVU : 17- 38: vsagm Anpsp-Pv-GPaLgQqgvnImEFC kafna RL11_SERMA : 17- 38: vaagm Anpsp-Pv-GPaLgQqgvnImEFC kafna RL11_SPIOL : 89- 110: leagk Atpap-Pv-GPaLgSkgvnImAFC kdyna RL11_STACA : 17- 38: ipagk Anpap-Pv-GPaLgQagvnImGFC kefna RL11_STRGR : 20- 42: qinag AanpapPv-GPaLgQhgvnImEFC kayna RL11_STRGR : 20- 42: qinag Aanpa-PpvGPaLgQhgvnImEFC kayna RL11_STRGR : 21- 42: inaga Anpap-Pv-GPaLgQhgvnImEFC kayna RL11_STRSQ : 20- 42: qikag AanpapPv-GPaLgQhgvnImEFC kayna RL11_STRSQ : 20- 42: qikag Aanpa-PpvGPaLgQhgvnImEFC kayna RL11_STRSQ : 21- 42: ikaga Anpap-Pv-GPaLgQhgvnImEFC kayna RL11_STRVG : 20- 42: qikag AanpapPv-GPaLgQhgvnImEFC kayna RL11_STRVG : 20- 42: qikag Aanpa-PpvGPaLgQhgvnImEFC kayna RL11_STRVG : 21- 42: ikaga Anpap-Pv-GPaLgQhgvnImEFC kayna RL11_SULSO : 15- 36: veggs Akpgp-Pl-GPtLsQlglnVqEVV kkind RL11_SYNY3 : 18- 39: lpagk Anpap-Pv-GPaLgQhgvnImAFC keyna RL11_THEMA : 18- 39: lpagk Atpap-Pv-GPaLgQhgvnImEFC krfna RL11_THETH : 17- 38: lpagk Atpap-Pv-GPaLgQhganImEFV kafna RL12_HUMAN : 24- 47: ggevg AtsalaPkiGPlGlSpkkvGdDIA katgd RL12_MOUSE : 24- 47: ggevg AtsalaPkiGPlGlSpkkvGdDIA katgd RL12_RAT : 24- 47: ggevg AtsalaPkiGPlGlSpkkvGdDIA katgd RL12_YEAST : 24- 47: ggevg AsaalaPkiGPlGlSpkkvGeDIA katke YKAE_CAEEL : 32- 53: ikaqm Asaap-Pl-GPqLgQrglnVaNFC kefnk C 3: 30.3959 33( 23) A-x(0,1)-P-x(2,4)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] Occurences: 33(23) RL11_BACSU : 17- 38: ipagk AnPappvGPaLgQagvnVmGFC kefna RL11_BACSU : 20- 38: gkanp A-Ppv--GPaLgQagvnVmGFC kefna RL11_CGDAB : 17- 38: iesgs AkPsppvGPaIgQagipImAFC kafna RL11_ECOLI : 17- 38: vaagm AnPsppvGPaLgQqgvnImEFC kafna RL11_HAEIN : 17- 38: vaagm AnPsppvGPaLgQqgvnImEFC kafna RL11_HALCU : 13- 34: vaggq AdPgpplGPeLgPtpvdVqAVV qeind RL11_HALMA : 13- 34: vpgge AnPgpplGPeLgPtpvdVqAVV qeind RL11_HALVO : 13- 34: vpggk AnPgpplGPeLgPtpvdVqDVV ndind RL11_PROVU : 17- 38: vsagm AnPsppvGPaLgQqgvnImEFC kafna RL11_SERMA : 17- 38: vaagm AnPsppvGPaLgQqgvnImEFC kafna RL11_SPIOL : 89- 110: leagk AtPappvGPaLgSkgvnImAFC kdyna RL11_SPIOL : 92- 110: gkatp A-Ppv--GPaLgSkgvnImAFC kdyna RL11_STACA : 17- 38: ipagk AnPappvGPaLgQagvnImGFC kefna RL11_STACA : 20- 38: gkanp A-Ppv--GPaLgQagvnImGFC kefna RL11_STRGR : 21- 42: inaga AnPappvGPaLgQhgvnImEFC kayna RL11_STRGR : 24- 42: gaanp A-Ppv--GPaLgQhgvnImEFC kayna RL11_STRSQ : 21- 42: ikaga AnPappvGPaLgQhgvnImEFC kayna RL11_STRSQ : 24- 42: gaanp A-Ppv--GPaLgQhgvnImEFC kayna RL11_STRVG : 21- 42: ikaga AnPappvGPaLgQhgvnImEFC kayna RL11_STRVG : 24- 42: gaanp A-Ppv--GPaLgQhgvnImEFC kayna RL11_SULSO : 15- 36: veggs AkPgpplGPtLsQlglnVqEVV kkind RL11_SYNY3 : 18- 39: lpagk AnPappvGPaLgQhgvnImAFC keyna RL11_SYNY3 : 21- 39: gkanp A-Ppv--GPaLgQhgvnImAFC keyna RL11_THEMA : 18- 39: lpagk AtPappvGPaLgQhgvnImEFC krfna RL11_THEMA : 21- 39: gkatp A-Ppv--GPaLgQhgvnImEFC krfna RL11_THETH : 17- 38: lpagk AtPappvGPaLgQhganImEFV kafna RL11_THETH : 20- 38: gkatp A-Ppv--GPaLgQhganImEFV kafna RL12_HUMAN : 29- 47: atsal A-Pki--GPlGlSpkkvGdDIA katgd RL12_MOUSE : 29- 47: atsal A-Pki--GPlGlSpkkvGdDIA katgd RL12_RAT : 29- 47: atsal A-Pki--GPlGlSpkkvGdDIA katgd RL12_YEAST : 29- 47: asaal A-Pki--GPlGlSpkkvGeDIA katke YKAE_CAEEL : 34- 53: aqmas AaPpl--GPqLgQrglnVaNFC kefnk YKAE_CAEEL : 35- 53: qmasa A-Ppl--GPqLgQrglnVaNFC kefnk D 4: 30.3959 35( 23) A-x(1,3)-P-x(1,2)-G-P-x-[GIL]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] Occurences: 35(23) RL11_BACSU : 17- 38: ipagk AnpaPpvGPaLgQagvnVmGFC kefna RL11_BACSU : 20- 38: gkanp Ap--Pv-GPaLgQagvnVmGFC kefna RL11_CGDAB : 17- 38: iesgs AkpsPpvGPaIgQagipImAFC kafna RL11_ECOLI : 17- 38: vaagm AnpsPpvGPaLgQqgvnImEFC kafna RL11_HAEIN : 17- 38: vaagm AnpsPpvGPaLgQqgvnImEFC kafna RL11_HALCU : 13- 34: vaggq AdpgPplGPeLgPtpvdVqAVV qeind RL11_HALMA : 13- 34: vpgge AnpgPplGPeLgPtpvdVqAVV qeind RL11_HALVO : 13- 34: vpggk AnpgPplGPeLgPtpvdVqDVV ndind RL11_PROVU : 17- 38: vsagm AnpsPpvGPaLgQqgvnImEFC kafna RL11_SERMA : 17- 38: vaagm AnpsPpvGPaLgQqgvnImEFC kafna RL11_SPIOL : 89- 110: leagk AtpaPpvGPaLgSkgvnImAFC kdyna RL11_SPIOL : 92- 110: gkatp Ap--Pv-GPaLgSkgvnImAFC kdyna RL11_STACA : 17- 38: ipagk AnpaPpvGPaLgQagvnImGFC kefna RL11_STACA : 20- 38: gkanp Ap--Pv-GPaLgQagvnImGFC kefna RL11_STRGR : 21- 42: inaga AnpaPpvGPaLgQhgvnImEFC kayna RL11_STRGR : 24- 42: gaanp Ap--Pv-GPaLgQhgvnImEFC kayna RL11_STRSQ : 21- 42: ikaga AnpaPpvGPaLgQhgvnImEFC kayna RL11_STRSQ : 24- 42: gaanp Ap--Pv-GPaLgQhgvnImEFC kayna RL11_STRVG : 21- 42: ikaga AnpaPpvGPaLgQhgvnImEFC kayna RL11_STRVG : 24- 42: gaanp Ap--Pv-GPaLgQhgvnImEFC kayna RL11_SULSO : 15- 36: veggs AkpgPplGPtLsQlglnVqEVV kkind RL11_SYNY3 : 18- 39: lpagk AnpaPpvGPaLgQhgvnImAFC keyna RL11_SYNY3 : 21- 39: gkanp Ap--Pv-GPaLgQhgvnImAFC keyna RL11_THEMA : 18- 39: lpagk AtpaPpvGPaLgQhgvnImEFC krfna RL11_THEMA : 21- 39: gkatp Ap--Pv-GPaLgQhgvnImEFC krfna RL11_THETH : 17- 38: lpagk AtpaPpvGPaLgQhganImEFV kafna RL11_THETH : 20- 38: gkatp Ap--Pv-GPaLgQhganImEFV kafna RL12_HUMAN : 27- 47: vgats Ala-PkiGPlGlSpkkvGdDIA katgd RL12_MOUSE : 27- 47: vgats Ala-PkiGPlGlSpkkvGdDIA katgd RL12_RAT : 27- 47: vgats Ala-PkiGPlGlSpkkvGdDIA katgd RL12_YEAST : 26- 47: evgas AalaPkiGPlGlSpkkvGeDIA katke RL12_YEAST : 27- 47: vgasa Ala-PkiGPlGlSpkkvGeDIA katke YKAE_CAEEL : 32- 53: ikaqm AsaaPplGPqLgQrglnVaNFC kefnk YKAE_CAEEL : 34- 53: aqmas Aap-Pl-GPqLgQrglnVaNFC kefnk YKAE_CAEEL : 34- 53: aqmas Aa--PplGPqLgQrglnVaNFC kefnk YKAE_CAEEL : 35- 53: qmasa Ap--Pl-GPqLgQrglnVaNFC kefnk E 5: 29.9678 23( 23) P-x-[ILV]-G-P-x-[GILP]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] Occurences: 23(23) RL11_BACSU : 21- 38: kanpa PpVGPaLgQagvnVmGFC kefna RL11_CGDAB : 21- 38: sakps PpVGPaIgQagipImAFC kafna RL11_ECOLI : 21- 38: manps PpVGPaLgQqgvnImEFC kafna RL11_HAEIN : 21- 38: manps PpVGPaLgQqgvnImEFC kafna RL11_HALCU : 17- 34: qadpg PpLGPeLgPtpvdVqAVV qeind RL11_HALMA : 17- 34: eanpg PpLGPeLgPtpvdVqAVV qeind RL11_HALVO : 17- 34: kanpg PpLGPeLgPtpvdVqDVV ndind RL11_PROVU : 21- 38: manps PpVGPaLgQqgvnImEFC kafna RL11_SERMA : 21- 38: manps PpVGPaLgQqgvnImEFC kafna RL11_SPIOL : 93- 110: katpa PpVGPaLgSkgvnImAFC kdyna RL11_STACA : 21- 38: kanpa PpVGPaLgQagvnImGFC kefna RL11_STRGR : 25- 42: aanpa PpVGPaLgQhgvnImEFC kayna RL11_STRSQ : 25- 42: aanpa PpVGPaLgQhgvnImEFC kayna RL11_STRVG : 25- 42: aanpa PpVGPaLgQhgvnImEFC kayna RL11_SULSO : 19- 36: sakpg PpLGPtLsQlglnVqEVV kkind RL11_SYNY3 : 22- 39: kanpa PpVGPaLgQhgvnImAFC keyna RL11_THEMA : 22- 39: katpa PpVGPaLgQhgvnImEFC krfna RL11_THETH : 21- 38: katpa PpVGPaLgQhganImEFV kafna RL12_HUMAN : 30- 47: tsala PkIGPlGlSpkkvGdDIA katgd RL12_MOUSE : 30- 47: tsala PkIGPlGlSpkkvGdDIA katgd RL12_RAT : 30- 47: tsala PkIGPlGlSpkkvGdDIA katgd RL12_YEAST : 30- 47: saala PkIGPlGlSpkkvGeDIA katke YKAE_CAEEL : 36- 53: masaa PpLGPqLgQrglnVaNFC kefnk F 6: 27.0036 23( 23) A-x(2)-[AEGS]-P-P-x-[DG]-x(3)-[DGQS]-x(2)-[GIPV]-x(4)-[ADEGN]-[FIV] Occurences: 23(23) RL11_BACSU : 17- 37: ipagk AnpAPPvGpalGqaGvnvmGF ckefn RL11_CGDAB : 17- 37: iesgs AkpSPPvGpaiGqaGipimAF ckafn RL11_ECOLI : 17- 37: vaagm AnpSPPvGpalGqqGvnimEF ckafn RL11_HAEIN : 17- 37: vaagm AnpSPPvGpalGqqGvnimEF ckafn RL11_HALCU : 13- 33: vaggq AdpGPPlGpelGptPvdvqAV vqein RL11_HALMA : 13- 33: vpgge AnpGPPlGpelGptPvdvqAV vqein RL11_HALVO : 13- 33: vpggk AnpGPPlGpelGptPvdvqDV vndin RL11_PROVU : 17- 37: vsagm AnpSPPvGpalGqqGvnimEF ckafn RL11_SERMA : 17- 37: vaagm AnpSPPvGpalGqqGvnimEF ckafn RL11_SPIOL : 89- 109: leagk AtpAPPvGpalGskGvnimAF ckdyn RL11_STACA : 17- 37: ipagk AnpAPPvGpalGqaGvnimGF ckefn RL11_STRGR : 21- 41: inaga AnpAPPvGpalGqhGvnimEF ckayn RL11_STRSQ : 21- 41: ikaga AnpAPPvGpalGqhGvnimEF ckayn RL11_STRVG : 21- 41: ikaga AnpAPPvGpalGqhGvnimEF ckayn RL11_SULSO : 15- 35: veggs AkpGPPlGptlSqlGlnvqEV vkkin RL11_SYNY3 : 18- 38: lpagk AnpAPPvGpalGqhGvnimAF ckeyn RL11_THEMA : 18- 38: lpagk AtpAPPvGpalGqhGvnimEF ckrfn RL11_THETH : 17- 37: lpagk AtpAPPvGpalGqhGanimEF vkafn RL12_HUMAN : 84- 104: aliik AlkEPPrDrkkQknIkhsgNI tfdei RL12_MOUSE : 84- 104: gliik AlkEPPrDrkkQknIkhsgNI tfdei RL12_RAT : 84- 104: aliik AlkEPPrDrkkQknIkhngNI tfdei RL12_YEAST : 84- 104: slvit AlkEPPrDrkkDknVkhsgNI qldei YKAE_CAEEL : 32- 52: ikaqm AsaAPPlGpqlGqrGlnvaNF ckefn G 7: 26.8060 42( 23) P-x(1,2)-G-P-x-[GILP]-x-[PQS]-x(4)-[GIV]-x-[ADEGN]-[FIV]-[ACV] Occurences: 42(23) RL11_BACSU : 21- 38: kanpa PpvGPaLgQagvnVmGFC kefna RL11_BACSU : 22- 38: anpap Pv-GPaLgQagvnVmGFC kefna RL11_CGDAB : 21- 38: sakps PpvGPaIgQagipImAFC kafna RL11_CGDAB : 22- 38: akpsp Pv-GPaIgQagipImAFC kafna RL11_ECOLI : 21- 38: manps PpvGPaLgQqgvnImEFC kafna RL11_ECOLI : 22- 38: anpsp Pv-GPaLgQqgvnImEFC kafna RL11_HAEIN : 21- 38: manps PpvGPaLgQqgvnImEFC kafna RL11_HAEIN : 22- 38: anpsp Pv-GPaLgQqgvnImEFC kafna RL11_HALCU : 17- 34: qadpg PplGPeLgPtpvdVqAVV qeind RL11_HALCU : 18- 34: adpgp Pl-GPeLgPtpvdVqAVV qeind RL11_HALMA : 17- 34: eanpg PplGPeLgPtpvdVqAVV qeind RL11_HALMA : 18- 34: anpgp Pl-GPeLgPtpvdVqAVV qeind RL11_HALVO : 17- 34: kanpg PplGPeLgPtpvdVqDVV ndind RL11_HALVO : 18- 34: anpgp Pl-GPeLgPtpvdVqDVV ndind RL11_PROVU : 21- 38: manps PpvGPaLgQqgvnImEFC kafna RL11_PROVU : 22- 38: anpsp Pv-GPaLgQqgvnImEFC kafna RL11_SERMA : 21- 38: manps PpvGPaLgQqgvnImEFC kafna RL11_SERMA : 22- 38: anpsp Pv-GPaLgQqgvnImEFC kafna RL11_SPIOL : 93- 110: katpa PpvGPaLgSkgvnImAFC kdyna RL11_SPIOL : 94- 110: atpap Pv-GPaLgSkgvnImAFC kdyna RL11_STACA : 21- 38: kanpa PpvGPaLgQagvnImGFC kefna RL11_STACA : 22- 38: anpap Pv-GPaLgQagvnImGFC kefna RL11_STRGR : 25- 42: aanpa PpvGPaLgQhgvnImEFC kayna RL11_STRGR : 26- 42: anpap Pv-GPaLgQhgvnImEFC kayna RL11_STRSQ : 25- 42: aanpa PpvGPaLgQhgvnImEFC kayna RL11_STRSQ : 26- 42: anpap Pv-GPaLgQhgvnImEFC kayna RL11_STRVG : 25- 42: aanpa PpvGPaLgQhgvnImEFC kayna RL11_STRVG : 26- 42: anpap Pv-GPaLgQhgvnImEFC kayna RL11_SULSO : 19- 36: sakpg PplGPtLsQlglnVqEVV kkind RL11_SULSO : 20- 36: akpgp Pl-GPtLsQlglnVqEVV kkind RL11_SYNY3 : 22- 39: kanpa PpvGPaLgQhgvnImAFC keyna RL11_SYNY3 : 23- 39: anpap Pv-GPaLgQhgvnImAFC keyna RL11_THEMA : 22- 39: katpa PpvGPaLgQhgvnImEFC krfna RL11_THEMA : 23- 39: atpap Pv-GPaLgQhgvnImEFC krfna RL11_THETH : 21- 38: katpa PpvGPaLgQhganImEFV kafna RL11_THETH : 22- 38: atpap Pv-GPaLgQhganImEFV kafna RL12_HUMAN : 30- 47: tsala PkiGPlGlSpkkvGdDIA katgd RL12_MOUSE : 30- 47: tsala PkiGPlGlSpkkvGdDIA katgd RL12_RAT : 30- 47: tsala PkiGPlGlSpkkvGdDIA katgd RL12_YEAST : 30- 47: saala PkiGPlGlSpkkvGeDIA katke YKAE_CAEEL : 36- 53: masaa PplGPqLgQrglnVaNFC kefnk YKAE_CAEEL : 37- 53: asaap Pl-GPqLgQrglnVaNFC kefnk H 8: 26.0718 23( 23) P-[LV]-G-x(0,2)-P-x(2)-[GSV]-x(2)-[DGP]-[AILV]-[ADNP]-x(2)-[ADEGNT] Occurences: 23(23) RL11_BACSU : 22- 36: anpap PVG--PalGqaGVNvmG fckef RL11_CGDAB : 22- 36: akpsp PVG--PaiGqaGIPimA fckaf RL11_ECOLI : 22- 36: anpsp PVG--PalGqqGVNimE fckaf RL11_HAEIN : 22- 36: anpsp PVG--PalGqqGVNimE fckaf RL11_HALCU : 18- 32: adpgp PLG--PelGptPVDvqA vvqei RL11_HALMA : 18- 32: anpgp PLG--PelGptPVDvqA vvqei RL11_HALVO : 18- 32: anpgp PLG--PelGptPVDvqD vvndi RL11_PROVU : 22- 36: anpsp PVG--PalGqqGVNimE fckaf RL11_SERMA : 22- 36: anpsp PVG--PalGqqGVNimE fckaf RL11_SPIOL : 94- 108: atpap PVG--PalGskGVNimA fckdy RL11_STACA : 22- 36: anpap PVG--PalGqaGVNimG fckef RL11_STRGR : 26- 40: anpap PVG--PalGqhGVNimE fckay RL11_STRSQ : 26- 40: anpap PVG--PalGqhGVNimE fckay RL11_STRVG : 26- 40: anpap PVG--PalGqhGVNimE fckay RL11_SULSO : 20- 34: akpgp PLG--PtlSqlGLNvqE vvkki RL11_SYNY3 : 23- 37: anpap PVG--PalGqhGVNimA fckey RL11_THEMA : 23- 37: atpap PVG--PalGqhGVNimE fckrf RL11_THETH : 22- 36: atpap PVG--PalGqhGANimE fvkaf RL12_HUMAN : 34- 50: apkig PLGlsPkkVgdDIAkaT gdwkg RL12_MOUSE : 34- 50: apkig PLGlsPkkVgdDIAkaT gdwkg RL12_RAT : 34- 50: apkig PLGlsPkkVgdDIAkaT gdwkg RL12_YEAST : 34- 50: apkig PLGlsPkkVgeDIAkaT kefkg YKAE_CAEEL : 37- 51: asaap PLG--PqlGqrGLNvaN fckef I 9: 20.4676 41( 23) P-x(0,2)-G-P-x(1,2)-G-x(2)-[GLP]-x(2)-[ILV] Occurences: 41(23) RL11_BACSU : 21- 34: kanpa PpvGPalGqaGvnV mgfck RL11_BACSU : 22- 34: anpap Pv-GPalGqaGvnV mgfck RL11_CGDAB : 21- 34: sakps PpvGPaiGqaGipI mafck RL11_CGDAB : 22- 34: akpsp Pv-GPaiGqaGipI mafck RL11_ECOLI : 21- 34: manps PpvGPalGqqGvnI mefck RL11_ECOLI : 22- 34: anpsp Pv-GPalGqqGvnI mefck RL11_HAEIN : 21- 34: manps PpvGPalGqqGvnI mefck RL11_HAEIN : 22- 34: anpsp Pv-GPalGqqGvnI mefck RL11_HALCU : 17- 30: qadpg PplGPelGptPvdV qavvq RL11_HALCU : 18- 30: adpgp Pl-GPelGptPvdV qavvq RL11_HALMA : 17- 30: eanpg PplGPelGptPvdV qavvq RL11_HALMA : 18- 30: anpgp Pl-GPelGptPvdV qavvq RL11_HALVO : 17- 30: kanpg PplGPelGptPvdV qdvvn RL11_HALVO : 18- 30: anpgp Pl-GPelGptPvdV qdvvn RL11_PROVU : 21- 34: manps PpvGPalGqqGvnI mefck RL11_PROVU : 22- 34: anpsp Pv-GPalGqqGvnI mefck RL11_SERMA : 21- 34: manps PpvGPalGqqGvnI mefck RL11_SERMA : 22- 34: anpsp Pv-GPalGqqGvnI mefck RL11_SPIOL : 93- 106: katpa PpvGPalGskGvnI mafck RL11_SPIOL : 94- 106: atpap Pv-GPalGskGvnI mafck RL11_STACA : 21- 34: kanpa PpvGPalGqaGvnI mgfck RL11_STACA : 22- 34: anpap Pv-GPalGqaGvnI mgfck RL11_STRGR : 25- 38: aanpa PpvGPalGqhGvnI mefck RL11_STRGR : 26- 38: anpap Pv-GPalGqhGvnI mefck RL11_STRSQ : 25- 38: aanpa PpvGPalGqhGvnI mefck RL11_STRSQ : 26- 38: anpap Pv-GPalGqhGvnI mefck RL11_STRVG : 25- 38: aanpa PpvGPalGqhGvnI mefck RL11_STRVG : 26- 38: anpap Pv-GPalGqhGvnI mefck RL11_SULSO : 17- 28: ggsak P--GPplGptLsqL glnvq RL11_SYNY3 : 22- 35: kanpa PpvGPalGqhGvnI mafck RL11_SYNY3 : 23- 35: anpap Pv-GPalGqhGvnI mafck RL11_THEMA : 22- 35: katpa PpvGPalGqhGvnI mefck RL11_THEMA : 23- 35: atpap Pv-GPalGqhGvnI mefck RL11_THETH : 21- 34: katpa PpvGPalGqhGanI mefvk RL11_THETH : 22- 34: atpap Pv-GPalGqhGanI mefvk RL12_HUMAN : 30- 42: tsala PkiGPl-GlsPkkV gddia RL12_MOUSE : 30- 42: tsala PkiGPl-GlsPkkV gddia RL12_RAT : 30- 42: tsala PkiGPl-GlsPkkV gddia RL12_YEAST : 30- 42: saala PkiGPl-GlsPkkV gedia YKAE_CAEEL : 36- 49: masaa PplGPqlGqrGlnV anfck YKAE_CAEEL : 37- 49: asaap Pl-GPqlGqrGlnV anfck J 10: 17.2976 23( 23) G-P-x(1,2)-G-x(2)-[GLP]-x(2)-[ILV] Occurences: 23(23) RL11_BACSU : 24- 34: pappv GPalGqaGvnV mgfck RL11_CGDAB : 24- 34: psppv GPaiGqaGipI mafck RL11_ECOLI : 24- 34: psppv GPalGqqGvnI mefck RL11_HAEIN : 24- 34: psppv GPalGqqGvnI mefck RL11_HALCU : 20- 30: pgppl GPelGptPvdV qavvq RL11_HALMA : 20- 30: pgppl GPelGptPvdV qavvq RL11_HALVO : 20- 30: pgppl GPelGptPvdV qdvvn RL11_PROVU : 24- 34: psppv GPalGqqGvnI mefck RL11_SERMA : 24- 34: psppv GPalGqqGvnI mefck RL11_SPIOL : 96- 106: pappv GPalGskGvnI mafck RL11_STACA : 24- 34: pappv GPalGqaGvnI mgfck RL11_STRGR : 28- 38: pappv GPalGqhGvnI mefck RL11_STRSQ : 28- 38: pappv GPalGqhGvnI mefck RL11_STRVG : 28- 38: pappv GPalGqhGvnI mefck RL11_SULSO : 18- 28: gsakp GPplGptLsqL glnvq RL11_SYNY3 : 25- 35: pappv GPalGqhGvnI mafck RL11_THEMA : 25- 35: pappv GPalGqhGvnI mefck RL11_THETH : 24- 34: pappv GPalGqhGanI mefvk RL12_HUMAN : 33- 42: lapki GPl-GlsPkkV gddia RL12_MOUSE : 33- 42: lapki GPl-GlsPkkV gddia RL12_RAT : 33- 42: lapki GPl-GlsPkkV gddia RL12_YEAST : 33- 42: lapki GPl-GlsPkkV gedia YKAE_CAEEL : 39- 49: aappl GPqlGqrGlnV anfck K 11: 16.3749 43( 23) P-x(2,3)-P-x(1,2)-G-x(2)-[GLP]-x(2)-[AILV] Occurences: 43(23) RL11_BACSU : 19- 30: agkan Pap-Pv-GpaLgqA gvnvm RL11_BACSU : 21- 34: kanpa PpvgPalGqaGvnV mgfck RL11_BACSU : 22- 34: anpap Pvg-PalGqaGvnV mgfck RL11_CGDAB : 21- 34: sakps PpvgPaiGqaGipI mafck RL11_CGDAB : 22- 34: akpsp Pvg-PaiGqaGipI mafck RL11_ECOLI : 21- 34: manps PpvgPalGqqGvnI mefck RL11_ECOLI : 22- 34: anpsp Pvg-PalGqqGvnI mefck RL11_HAEIN : 21- 34: manps PpvgPalGqqGvnI mefck RL11_HAEIN : 22- 34: anpsp Pvg-PalGqqGvnI mefck RL11_HALCU : 17- 30: qadpg PplgPelGptPvdV qavvq RL11_HALCU : 18- 30: adpgp Plg-PelGptPvdV qavvq RL11_HALMA : 17- 30: eanpg PplgPelGptPvdV qavvq RL11_HALMA : 18- 30: anpgp Plg-PelGptPvdV qavvq RL11_HALVO : 17- 30: kanpg PplgPelGptPvdV qdvvn RL11_HALVO : 18- 30: anpgp Plg-PelGptPvdV qdvvn RL11_PROVU : 21- 34: manps PpvgPalGqqGvnI mefck RL11_PROVU : 22- 34: anpsp Pvg-PalGqqGvnI mefck RL11_SERMA : 21- 34: manps PpvgPalGqqGvnI mefck RL11_SERMA : 22- 34: anpsp Pvg-PalGqqGvnI mefck RL11_SPIOL : 93- 106: katpa PpvgPalGskGvnI mafck RL11_SPIOL : 94- 106: atpap Pvg-PalGskGvnI mafck RL11_STACA : 19- 30: agkan Pap-Pv-GpaLgqA gvnim RL11_STACA : 21- 34: kanpa PpvgPalGqaGvnI mgfck RL11_STACA : 22- 34: anpap Pvg-PalGqaGvnI mgfck RL11_STRGR : 25- 38: aanpa PpvgPalGqhGvnI mefck RL11_STRGR : 26- 38: anpap Pvg-PalGqhGvnI mefck RL11_STRSQ : 25- 38: aanpa PpvgPalGqhGvnI mefck RL11_STRSQ : 26- 38: anpap Pvg-PalGqhGvnI mefck RL11_STRVG : 25- 38: aanpa PpvgPalGqhGvnI mefck RL11_STRVG : 26- 38: anpap Pvg-PalGqhGvnI mefck RL11_SULSO : 17- 28: ggsak Pgp-Pl-GptLsqL glnvq RL11_SYNY3 : 22- 35: kanpa PpvgPalGqhGvnI mafck RL11_SYNY3 : 23- 35: anpap Pvg-PalGqhGvnI mafck RL11_THEMA : 22- 35: katpa PpvgPalGqhGvnI mefck RL11_THEMA : 23- 35: atpap Pvg-PalGqhGvnI mefck RL11_THETH : 21- 34: katpa PpvgPalGqhGanI mefvk RL11_THETH : 22- 34: atpap Pvg-PalGqhGanI mefvk RL12_HUMAN : 30- 42: tsala PkigPl-GlsPkkV gddia RL12_MOUSE : 30- 42: tsala PkigPl-GlsPkkV gddia RL12_RAT : 30- 42: tsala PkigPl-GlsPkkV gddia RL12_YEAST : 30- 42: saala PkigPl-GlsPkkV gedia YKAE_CAEEL : 36- 49: masaa PplgPqlGqrGlnV anfck YKAE_CAEEL : 37- 49: asaap Plg-PqlGqrGlnV anfck L 12: 16.1327 23( 23) P-P-x(2,3)-P-[AENQT]-x(4)-[GLPV] Occurences: 23(23) RL11_BACSU : 21- 31: kanpa PPvg-PAlgqaG vnvmg RL11_CGDAB : 21- 31: sakps PPvg-PAigqaG ipima RL11_ECOLI : 21- 31: manps PPvg-PAlgqqG vnime RL11_HAEIN : 21- 31: manps PPvg-PAlgqqG vnime RL11_HALCU : 17- 27: qadpg PPlg-PElgptP vdvqa RL11_HALMA : 17- 27: eanpg PPlg-PElgptP vdvqa RL11_HALVO : 17- 27: kanpg PPlg-PElgptP vdvqd RL11_PROVU : 21- 31: manps PPvg-PAlgqqG vnime RL11_SERMA : 21- 31: manps PPvg-PAlgqqG vnime RL11_SPIOL : 93- 103: katpa PPvg-PAlgskG vnima RL11_STACA : 21- 31: kanpa PPvg-PAlgqaG vnimg RL11_STRGR : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_STRSQ : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_STRVG : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_SULSO : 19- 29: sakpg PPlg-PTlsqlG lnvqe RL11_SYNY3 : 22- 32: kanpa PPvg-PAlgqhG vnima RL11_THEMA : 22- 32: katpa PPvg-PAlgqhG vnime RL11_THETH : 21- 31: katpa PPvg-PAlgqhG anime RL12_HUMAN : 2- 13: m PPkfdPNeikvV ylrct RL12_MOUSE : 2- 13: m PPkfdPNevkvV ylrct RL12_RAT : 2- 13: m PPkfdPNeikvV ylrct RL12_YEAST : 2- 13: m PPkfdPNevkyL ylrav YKAE_CAEEL : 36- 46: masaa PPlg-PQlgqrG lnvan M 13: 15.6327 23( 23) P-P-x(1,3)-P-[AENQT]-x(4)-[GLPV] Occurences: 23(23) RL11_BACSU : 21- 31: kanpa PPvg-PAlgqaG vnvmg RL11_CGDAB : 21- 31: sakps PPvg-PAigqaG ipima RL11_ECOLI : 21- 31: manps PPvg-PAlgqqG vnime RL11_HAEIN : 21- 31: manps PPvg-PAlgqqG vnime RL11_HALCU : 17- 27: qadpg PPlg-PElgptP vdvqa RL11_HALMA : 17- 27: eanpg PPlg-PElgptP vdvqa RL11_HALVO : 17- 27: kanpg PPlg-PElgptP vdvqd RL11_PROVU : 21- 31: manps PPvg-PAlgqqG vnime RL11_SERMA : 21- 31: manps PPvg-PAlgqqG vnime RL11_SPIOL : 93- 103: katpa PPvg-PAlgskG vnima RL11_STACA : 21- 31: kanpa PPvg-PAlgqaG vnimg RL11_STRGR : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_STRSQ : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_STRVG : 25- 35: aanpa PPvg-PAlgqhG vnime RL11_SULSO : 19- 29: sakpg PPlg-PTlsqlG lnvqe RL11_SYNY3 : 22- 32: kanpa PPvg-PAlgqhG vnima RL11_THEMA : 22- 32: katpa PPvg-PAlgqhG vnime RL11_THETH : 21- 31: katpa PPvg-PAlgqhG anime RL12_HUMAN : 2- 13: m PPkfdPNeikvV ylrct RL12_MOUSE : 2- 13: m PPkfdPNevkvV ylrct RL12_RAT : 2- 13: m PPkfdPNeikvV ylrct RL12_YEAST : 2- 13: m PPkfdPNevkyL ylrav YKAE_CAEEL : 36- 46: masaa PPlg-PQlgqrG lnvan N 14: 15.6327 41( 23) P-x(0,1)-P-x(2,3)-P-[AENQT]-x(4)-[GLPV] Occurences: 41(23) RL11_BACSU : 19- 31: agkan PaPpvgPAlgqaG vnvmg RL11_BACSU : 21- 31: kanpa P-Pvg-PAlgqaG vnvmg RL11_CGDAB : 19- 31: sgsak PsPpvgPAigqaG ipima RL11_CGDAB : 21- 31: sakps P-Pvg-PAigqaG ipima RL11_ECOLI : 19- 31: agman PsPpvgPAlgqqG vnime RL11_ECOLI : 21- 31: manps P-Pvg-PAlgqqG vnime RL11_HAEIN : 19- 31: agman PsPpvgPAlgqqG vnime RL11_HAEIN : 21- 31: manps P-Pvg-PAlgqqG vnime RL11_HALCU : 15- 27: ggqad PgPplgPElgptP vdvqa RL11_HALCU : 17- 27: qadpg P-Plg-PElgptP vdvqa RL11_HALMA : 15- 27: ggean PgPplgPElgptP vdvqa RL11_HALMA : 17- 27: eanpg P-Plg-PElgptP vdvqa RL11_HALVO : 15- 27: ggkan PgPplgPElgptP vdvqd RL11_HALVO : 17- 27: kanpg P-Plg-PElgptP vdvqd RL11_PROVU : 19- 31: agman PsPpvgPAlgqqG vnime RL11_PROVU : 21- 31: manps P-Pvg-PAlgqqG vnime RL11_SERMA : 19- 31: agman PsPpvgPAlgqqG vnime RL11_SERMA : 21- 31: manps P-Pvg-PAlgqqG vnime RL11_SPIOL : 91- 103: agkat PaPpvgPAlgskG vnima RL11_SPIOL : 93- 103: katpa P-Pvg-PAlgskG vnima RL11_STACA : 19- 31: agkan PaPpvgPAlgqaG vnimg RL11_STACA : 21- 31: kanpa P-Pvg-PAlgqaG vnimg RL11_STRGR : 23- 35: agaan PaPpvgPAlgqhG vnime RL11_STRGR : 25- 35: aanpa P-Pvg-PAlgqhG vnime RL11_STRSQ : 23- 35: agaan PaPpvgPAlgqhG vnime RL11_STRSQ : 25- 35: aanpa P-Pvg-PAlgqhG vnime RL11_STRVG : 23- 35: agaan PaPpvgPAlgqhG vnime RL11_STRVG : 25- 35: aanpa P-Pvg-PAlgqhG vnime RL11_SULSO : 17- 29: ggsak PgPplgPTlsqlG lnvqe RL11_SULSO : 19- 29: sakpg P-Plg-PTlsqlG lnvqe RL11_SYNY3 : 20- 32: agkan PaPpvgPAlgqhG vnima RL11_SYNY3 : 22- 32: kanpa P-Pvg-PAlgqhG vnima RL11_THEMA : 20- 32: agkat PaPpvgPAlgqhG vnime RL11_THEMA : 22- 32: katpa P-Pvg-PAlgqhG vnime RL11_THETH : 19- 31: agkat PaPpvgPAlgqhG anime RL11_THETH : 21- 31: katpa P-Pvg-PAlgqhG anime RL12_HUMAN : 2- 13: m P-PkfdPNeikvV ylrct RL12_MOUSE : 2- 13: m P-PkfdPNevkvV ylrct RL12_RAT : 2- 13: m P-PkfdPNeikvV ylrct RL12_YEAST : 2- 13: m P-PkfdPNevkyL ylrav YKAE_CAEEL : 36- 46: masaa P-Plg-PQlgqrG lnvan O 15: 14.1780 33( 23) A-x(3)-[GNP]-P-x(2,4)-P Occurences: 33(23) RL11_BACSU : 14- 22: klqip AgkaNPap--P vgpal RL11_BACSU : 17- 25: ipagk AnpaPPvg--P algqa RL11_CGDAB : 17- 25: iesgs AkpsPPvg--P aigqa RL11_ECOLI : 14- 22: klqva AgmaNPsp--P vgpal RL11_ECOLI : 17- 25: vaagm AnpsPPvg--P algqq RL11_HAEIN : 14- 22: klqva AgmaNPsp--P vgpal RL11_HAEIN : 17- 25: vaagm AnpsPPvg--P algqq RL11_HALCU : 13- 21: vaggq AdpgPPlg--P elgpt RL11_HALMA : 13- 21: vpgge AnpgPPlg--P elgpt RL11_HALVO : 13- 21: vpggk AnpgPPlg--P elgpt RL11_PROVU : 14- 22: klqvs AgmaNPsp--P vgpal RL11_PROVU : 17- 25: vsagm AnpsPPvg--P algqq RL11_SERMA : 14- 22: klqva AgmaNPsp--P vgpal RL11_SERMA : 17- 25: vaagm AnpsPPvg--P algqq RL11_SPIOL : 89- 97: leagk AtpaPPvg--P algsk RL11_STACA : 14- 22: klqip AgkaNPap--P vgpal RL11_STACA : 17- 25: ipagk AnpaPPvg--P algqa RL11_STRGR : 18- 26: klqin AgaaNPap--P vgpal RL11_STRGR : 21- 29: inaga AnpaPPvg--P algqh RL11_STRSQ : 18- 26: klqik AgaaNPap--P vgpal RL11_STRSQ : 21- 29: ikaga AnpaPPvg--P algqh RL11_STRVG : 18- 26: klqik AgaaNPap--P vgpal RL11_STRVG : 21- 29: ikaga AnpaPPvg--P algqh RL11_SULSO : 15- 23: veggs AkpgPPlg--P tlsql RL11_SYNY3 : 15- 23: klalp AgkaNPap--P vgpal RL11_SYNY3 : 18- 26: lpagk AnpaPPvg--P algqh RL11_THEMA : 18- 26: lpagk AtpaPPvg--P algqh RL11_THETH : 17- 25: lpagk AtpaPPvg--P algqh RL12_HUMAN : 29- 39: atsal ApkiGPlglsP kkvgd RL12_MOUSE : 29- 39: atsal ApkiGPlglsP kkvgd RL12_RAT : 29- 39: atsal ApkiGPlglsP kkvgd RL12_YEAST : 29- 39: asaal ApkiGPlglsP kkvge YKAE_CAEEL : 32- 40: ikaqm AsaaPPlg--P qlgqr P 16: 14.1427 39( 23) A-x(3,4)-P-x(0,1)-P-x-[DGV] Occurences: 39(23) RL11_BACSU : 14- 23: klqip AgkanPaPpV gpalg RL11_BACSU : 17- 24: ipagk Anpa-P-PvG palgq RL11_CGDAB : 17- 24: iesgs Akps-P-PvG paigq RL11_ECOLI : 14- 23: klqva AgmanPsPpV gpalg RL11_ECOLI : 17- 24: vaagm Anps-P-PvG palgq RL11_HAEIN : 14- 23: klqva AgmanPsPpV gpalg RL11_HAEIN : 17- 24: vaagm Anps-P-PvG palgq RL11_HALCU : 13- 20: vaggq Adpg-P-PlG pelgp RL11_HALMA : 13- 20: vpgge Anpg-P-PlG pelgp RL11_HALVO : 13- 20: vpggk Anpg-P-PlG pelgp RL11_PROVU : 14- 23: klqvs AgmanPsPpV gpalg RL11_PROVU : 17- 24: vsagm Anps-P-PvG palgq RL11_SERMA : 14- 23: klqva AgmanPsPpV gpalg RL11_SERMA : 17- 24: vaagm Anps-P-PvG palgq RL11_SPIOL : 86- 95: klale AgkatPaPpV gpalg RL11_SPIOL : 89- 96: leagk Atpa-P-PvG palgs RL11_STACA : 14- 23: klqip AgkanPaPpV gpalg RL11_STACA : 17- 24: ipagk Anpa-P-PvG palgq RL11_STRGR : 18- 27: klqin AgaanPaPpV gpalg RL11_STRGR : 20- 28: qinag AanpaP-PvG palgq RL11_STRGR : 21- 28: inaga Anpa-P-PvG palgq RL11_STRSQ : 18- 27: klqik AgaanPaPpV gpalg RL11_STRSQ : 20- 28: qikag AanpaP-PvG palgq RL11_STRSQ : 21- 28: ikaga Anpa-P-PvG palgq RL11_STRVG : 18- 27: klqik AgaanPaPpV gpalg RL11_STRVG : 20- 28: qikag AanpaP-PvG palgq RL11_STRVG : 21- 28: ikaga Anpa-P-PvG palgq RL11_SULSO : 15- 22: veggs Akpg-P-PlG ptlsq RL11_SYNY3 : 15- 24: klalp AgkanPaPpV gpalg RL11_SYNY3 : 18- 25: lpagk Anpa-P-PvG palgq RL11_THEMA : 15- 24: klqlp AgkatPaPpV gpalg RL11_THEMA : 18- 25: lpagk Atpa-P-PvG palgq RL11_THETH : 14- 23: klqlp AgkatPaPpV gpalg RL11_THETH : 17- 24: lpagk Atpa-P-PvG palgq RL12_HUMAN : 84- 91: aliik Alke-P-PrD rkkqk RL12_MOUSE : 84- 91: gliik Alke-P-PrD rkkqk RL12_RAT : 84- 91: aliik Alke-P-PrD rkkqk RL12_YEAST : 84- 91: slvit Alke-P-PrD rkkdk YKAE_CAEEL : 32- 39: ikaqm Asaa-P-PlG pqlgq Q 17: 11.5102 26( 23) A-x(4,5)-P-x(1,2)-G Occurences: 26(23) RL11_BACSU : 17- 24: ipagk Anpap-Pv-G palgq RL11_CGDAB : 17- 24: iesgs Akpsp-Pv-G paigq RL11_ECOLI : 17- 24: vaagm Anpsp-Pv-G palgq RL11_HAEIN : 17- 24: vaagm Anpsp-Pv-G palgq RL11_HALCU : 13- 20: vaggq Adpgp-Pl-G pelgp RL11_HALMA : 13- 20: vpgge Anpgp-Pl-G pelgp RL11_HALVO : 13- 20: vpggk Anpgp-Pl-G pelgp RL11_PROVU : 17- 24: vsagm Anpsp-Pv-G palgq RL11_SERMA : 17- 24: vaagm Anpsp-Pv-G palgq RL11_SPIOL : 89- 96: leagk Atpap-Pv-G palgs RL11_STACA : 17- 24: ipagk Anpap-Pv-G palgq RL11_STRGR : 20- 28: qinag AanpapPv-G palgq RL11_STRGR : 20- 28: qinag Aanpa-PpvG palgq RL11_STRGR : 21- 28: inaga Anpap-Pv-G palgq RL11_STRSQ : 20- 28: qikag AanpapPv-G palgq RL11_STRSQ : 20- 28: qikag Aanpa-PpvG palgq RL11_STRSQ : 21- 28: ikaga Anpap-Pv-G palgq RL11_STRVG : 20- 28: qikag AanpapPv-G palgq RL11_STRVG : 20- 28: qikag Aanpa-PpvG palgq RL11_STRVG : 21- 28: ikaga Anpap-Pv-G palgq RL11_SULSO : 15- 22: veggs Akpgp-Pl-G ptlsq RL11_SYNY3 : 18- 25: lpagk Anpap-Pv-G palgq RL11_THEMA : 18- 25: lpagk Atpap-Pv-G palgq RL11_THETH : 17- 24: lpagk Atpap-Pv-G palgq RL12_HUMAN : 24- 33: ggevg AtsalaPkiG plgls RL12_MOUSE : 24- 33: ggevg AtsalaPkiG plgls RL12_RAT : 24- 33: ggevg AtsalaPkiG plgls RL12_YEAST : 24- 33: ggevg AsaalaPkiG plgls YKAE_CAEEL : 32- 39: ikaqm Asaap-Pl-G pqlgq R 18: 11.5102 36( 23) A-x(0,2)-G-x(3)-G Occurences: 36(23) RL11_BACSU : 81- 87: vllkk Aa-GiesG sgepn RL11_BACSU : 82- 87: llkka A--GiesG sgepn RL11_CGDAB : 44- 51: kafna AteGmekG ipipt RL11_ECOLI : 82- 88: vllkk Aa-GiksG sgkpn RL11_ECOLI : 83- 88: llkka A--GiksG sgkpn RL11_HAEIN : 82- 88: vllkk Aa-GiksG sgkpn RL11_HAEIN : 83- 88: llkka A--GiksG sgkpn RL11_HALCU : 13- 20: vaggq AdpGpplG pelgp RL11_HALCU : 78- 83: lvkde A--GfdtG sgepq RL11_HALMA : 13- 20: vpgge AnpGpplG pelgp RL11_HALMA : 78- 83: likde A--GfetG sgepq RL11_HALVO : 13- 20: vpggk AnpGpplG pelgp RL11_PROVU : 82- 88: vllkk Aa-GvksG sgkpn RL11_PROVU : 83- 88: llkka A--GvksG sgkpn RL11_SERMA : 82- 88: vllkk Aa-GiksG sgkpn RL11_SERMA : 83- 88: llkka A--GiksG sgkpn RL11_SPIOL : 153- 159: vlllk As-GaekG skdpq RL11_STACA : 81- 87: vllkk Aa-GvekG sgepn RL11_STACA : 82- 87: llkka A--GvekG sgepn RL11_STRGR : 85- 91: klilk Aa-GvdkG sgeph RL11_STRGR : 86- 91: lilka A--GvdkG sgeph RL11_STRSQ : 86- 91: lilkh A--GiekG sgeph RL11_STRVG : 86- 91: lilkh A--GiekG sgeph RL11_SULSO : 15- 22: veggs AkpGpplG ptlsq RL11_SYNY3 : 82- 88: vlirk Aa-GvekG ssepn RL11_SYNY3 : 83- 88: lirka A--GvekG ssepn RL11_THEMA : 82- 88: fllkk Aa-GiekG ssepk RL11_THEMA : 83- 88: llkka A--GiekG ssepk RL11_THETH : 81- 87: ylirk Aa-GlekG ahkpg RL11_THETH : 82- 87: lirka A--GlekG ahkpg RL12_HUMAN : 49- 55: ddiak At-GdwkG lritv RL12_MOUSE : 49- 55: ddiak At-GdwkG lritv RL12_RAT : 49- 55: ddiak At-GdwkG lritv RL12_YEAST : 17- 23: ylylr Av-GgevG asaal YKAE_CAEEL : 97- 103: wllkq Aa-GigrG kaskd YKAE_CAEEL : 98- 103: llkqa A--GigrG kaskd S 19: 11.5102 35( 23) A-x(1,2)-G-x(2,3)-G Occurences: 35(23) RL11_BACSU : 26- 31: ppvgp Al-Gqa-G vnvmg RL11_BACSU : 81- 87: vllkk Aa-GiesG sgepn RL11_CGDAB : 26- 31: ppvgp Ai-Gqa-G ipima RL11_CGDAB : 44- 51: kafna AteGmekG ipipt RL11_ECOLI : 26- 31: ppvgp Al-Gqq-G vnime RL11_ECOLI : 82- 88: vllkk Aa-GiksG sgkpn RL11_HAEIN : 26- 31: ppvgp Al-Gqq-G vnime RL11_HAEIN : 82- 88: vllkk Aa-GiksG sgkpn RL11_HALCU : 13- 20: vaggq AdpGpplG pelgp RL11_HALMA : 13- 20: vpgge AnpGpplG pelgp RL11_HALVO : 13- 20: vpggk AnpGpplG pelgp RL11_PROVU : 26- 31: ppvgp Al-Gqq-G vnime RL11_PROVU : 82- 88: vllkk Aa-GvksG sgkpn RL11_SERMA : 26- 31: ppvgp Al-Gqq-G vnime RL11_SERMA : 82- 88: vllkk Aa-GiksG sgkpn RL11_SPIOL : 98- 103: ppvgp Al-Gsk-G vnima RL11_SPIOL : 153- 159: vlllk As-GaekG skdpq RL11_STACA : 26- 31: ppvgp Al-Gqa-G vnimg RL11_STACA : 81- 87: vllkk Aa-GvekG sgepn RL11_STRGR : 30- 35: ppvgp Al-Gqh-G vnime RL11_STRGR : 85- 91: klilk Aa-GvdkG sgeph RL11_STRSQ : 30- 35: ppvgp Al-Gqh-G vnime RL11_STRVG : 30- 35: ppvgp Al-Gqh-G vnime RL11_SULSO : 15- 22: veggs AkpGpplG ptlsq RL11_SYNY3 : 27- 32: ppvgp Al-Gqh-G vnima RL11_SYNY3 : 82- 88: vlirk Aa-GvekG ssepn RL11_THEMA : 27- 32: ppvgp Al-Gqh-G vnime RL11_THEMA : 82- 88: fllkk Aa-GiekG ssepk RL11_THETH : 26- 31: ppvgp Al-Gqh-G anime RL11_THETH : 81- 87: ylirk Aa-GlekG ahkpg RL12_HUMAN : 49- 55: ddiak At-GdwkG lritv RL12_MOUSE : 49- 55: ddiak At-GdwkG lritv RL12_RAT : 49- 55: ddiak At-GdwkG lritv RL12_YEAST : 17- 23: ylylr AvgGev-G asaal RL12_YEAST : 17- 23: ylylr Av-GgevG asaal YKAE_CAEEL : 97- 103: wllkq Aa-GigrG kaskd T 20: 11.5102 35( 23) A-x(1,3)-G-x(3)-G Occurences: 35(23) RL11_BACSU : 20- 28: gkanp AppvGpalG qagvn RL11_BACSU : 81- 87: vllkk Aa--GiesG sgepn RL11_CGDAB : 43- 51: ckafn AateGmekG ipipt RL11_CGDAB : 44- 51: kafna Ate-GmekG ipipt RL11_ECOLI : 82- 88: vllkk Aa--GiksG sgkpn RL11_HAEIN : 82- 88: vllkk Aa--GiksG sgkpn RL11_HALCU : 13- 20: vaggq Adp-GpplG pelgp RL11_HALMA : 13- 20: vpgge Anp-GpplG pelgp RL11_HALVO : 13- 20: vpggk Anp-GpplG pelgp RL11_PROVU : 82- 88: vllkk Aa--GvksG sgkpn RL11_SERMA : 82- 88: vllkk Aa--GiksG sgkpn RL11_SPIOL : 92- 100: gkatp AppvGpalG skgvn RL11_SPIOL : 153- 159: vlllk As--GaekG skdpq RL11_STACA : 20- 28: gkanp AppvGpalG qagvn RL11_STACA : 81- 87: vllkk Aa--GvekG sgepn RL11_STRGR : 24- 32: gaanp AppvGpalG qhgvn RL11_STRGR : 85- 91: klilk Aa--GvdkG sgeph RL11_STRSQ : 24- 32: gaanp AppvGpalG qhgvn RL11_STRVG : 24- 32: gaanp AppvGpalG qhgvn RL11_SULSO : 15- 22: veggs Akp-GpplG ptlsq RL11_SYNY3 : 21- 29: gkanp AppvGpalG qhgvn RL11_SYNY3 : 82- 88: vlirk Aa--GvekG ssepn RL11_THEMA : 21- 29: gkatp AppvGpalG qhgvn RL11_THEMA : 82- 88: fllkk Aa--GiekG ssepk RL11_THETH : 20- 28: gkatp AppvGpalG qhgan RL11_THETH : 81- 87: ylirk Aa--GlekG ahkpg RL12_HUMAN : 47- 55: vgddi AkatGdwkG lritv RL12_HUMAN : 49- 55: ddiak At--GdwkG lritv RL12_MOUSE : 47- 55: vgddi AkatGdwkG lritv RL12_MOUSE : 49- 55: ddiak At--GdwkG lritv RL12_RAT : 47- 55: vgddi AkatGdwkG lritv RL12_RAT : 49- 55: ddiak At--GdwkG lritv RL12_YEAST : 17- 23: ylylr Av--GgevG asaal YKAE_CAEEL : 35- 43: qmasa ApplGpqlG qrgln YKAE_CAEEL : 97- 103: wllkq Aa--GigrG kaskd Number of patterns evaluated by Pratt:656 Total running time: 1 seconds