------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 28 sequences from file RIBORED_SMALL PATTERN CONSERVATION: CM: min Nr of Seqs to Match 28 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBORED_SMALL.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RIR2_ASFB7 334 RIR2_ASFM2 327 RIR2_BPT4 388 RIR2_CAEEL 381 RIR2_DICDI 338 RIR2_EBV 302 RIR2_ECOLI 375 RIR2_HAEIN 375 RIR2_HSV11 340 RIR2_HSV1K 340 RIR2_HSV23 337 RIR2_HSVB3 314 RIR2_HSVEB 321 RIR2_HSVSA 305 RIR2_HUMAN 389 RIR2_MOUSE 390 RIR2_SALTY 375 RIR2_SCHPO 391 RIR2_SPISO 384 RIR2_SPVKA 274 RIR2_VACCC 319 RIR2_VACCP 319 RIR2_VACCV 319 RIR2_VARV 319 RIR2_VZVD 306 RIR2_YEAST 399 RIR4_ECOLI 110 RIR4_SALTY 319 Pratt run started at Thu Feb 6 21:05:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 30( 28) E-x(2,3)-F-F 2: 12.0102 30( 28) D-E-x(1,2)-H 3: 11.5102 41( 28) E-x(3,4)-F-x(0,1)-S 4: 11.5102 50( 28) A-x(1,2)-E-x(3,4)-F 5: 11.5102 67( 28) E-x(2,3)-F-x(4,5)-A 6: 11.5102 44( 28) E-x(3)-F-x(1,3)-F 7: 11.5102 44( 28) E-x(2,3)-F-x(0,1)-F 8: 11.0102 45( 28) L-x(2,4)-A-x(1,2)-E 9: 11.0102 42( 28) L-x(1,2)-E-x(0,2)-F 10: 11.0102 31( 28) E-x(3,5)-S-x(1,2)-F 11: 11.0102 57( 28) E-x(3,4)-F-x(1,3)-F 12: 10.5102 49( 28) V-x(0,2)-N-x(1,3)-L 13: 10.5102 41( 28) E-x(3,5)-V-x(2,4)-I 14: 10.5102 43( 28) E-x(3,5)-V-x(1,3)-I 15: 10.5102 53( 28) L-x(2,4)-A-x(0,2)-E 16: 10.5102 50( 28) L-x(2,4)-A-x(1,3)-E 17: 10.5102 60( 28) L-x(1,3)-L-x(0,2)-G 18: 10.5102 67( 28) A-x(2,4)-L-x(1,3)-L 19: 10.5102 50( 28) L-x(0,2)-F-x(1,3)-D 20: 10.5102 56( 28) L-x(2,4)-A-x(0,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 14.6145 28( 28) D-E-x(1,2)-H-x(3)-[AST] B 2: 13.7385 29( 28) E-x(3,4)-F-x(0,1)-S-[AGNS] C 3: 13.6910 46( 28) A-x(1,2)-E-x(3,4)-F-x(4)-[AGLV] D 4: 12.0102 30( 28) E-x(2,3)-F-F E 5: 11.9308 33( 28) V-x(0,2)-N-x(1,3)-L-x-[ADEGNST] F 6: 11.5102 67( 28) E-x(2,3)-F-x(4,5)-A G 7: 11.5102 44( 28) E-x(3)-F-x(1,3)-F H 8: 11.5102 44( 28) E-x(2,3)-F-x(0,1)-F I 9: 11.0102 45( 28) L-x(2,4)-A-x(1,2)-E J 10: 11.0102 42( 28) L-x(1,2)-E-x(0,2)-F K 11: 11.0102 31( 28) E-x(3,5)-S-x(1,2)-F L 12: 11.0102 57( 28) E-x(3,4)-F-x(1,3)-F M 13: 10.5102 41( 28) E-x(3,5)-V-x(2,4)-I N 14: 10.5102 43( 28) E-x(3,5)-V-x(1,3)-I O 15: 10.5102 53( 28) L-x(2,4)-A-x(0,2)-E P 16: 10.5102 50( 28) L-x(2,4)-A-x(1,3)-E Q 17: 10.5102 60( 28) L-x(1,3)-L-x(0,2)-G R 18: 10.5102 67( 28) A-x(2,4)-L-x(1,3)-L S 19: 10.5102 50( 28) L-x(0,2)-F-x(1,3)-D T 20: 10.5102 56( 28) L-x(2,4)-A-x(0,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 14.6145 28( 28) D-E-x(1,2)-H-x(3)-[AST] Occurences: 28(28) RIR2_ASFB7 : 204- 212: efisr DEgvHcsfA cflis RIR2_ASFM2 : 197- 205: efisr DEgmHcsfA cflis RIR2_BPT4 : 246- 254: kfiar DEqlHlkgT qyiir RIR2_CAEEL : 257- 265: elisr DEglHrdfA cllys RIR2_DICDI : 207- 215: elisr DEglHcdfA cllyt RIR2_EBV : 187- 195: nyisr DEllHtraA sllyn RIR2_ECOLI : 237- 245: rliar DEalHltgT qhmln RIR2_HAEIN : 237- 245: kfiar DEalHltgT qhiln RIR2_HSV11 : 220- 228: dlisr DEavHttaS cyiyn RIR2_HSV1K : 220- 228: dlisr DEavHttaS cyiyn RIR2_HSV23 : 217- 225: dlisr DEavHttaS cyiyn RIR2_HSVB3 : 199- 207: dlisr DEavHtaaS ccifd RIR2_HSVEB : 204- 212: dlisr DEaiHtraS cciyn RIR2_HSVSA : 190- 198: dyiar DEmlHtsaA allyn RIR2_HUMAN : 265- 273: elisr DEglHcdfA clmfk RIR2_MOUSE : 266- 274: elisr DEglHcdfA clmfk RIR2_SALTY : 237- 245: rliar DEalHltgT qhmln RIR2_SCHPO : 262- 270: elicr DEglHtdfA clmfs RIR2_SPISO : 257- 265: elisr DEglHcdfA clmfs RIR2_SPVKA : 196- 204: elisr DEglHcdfA clmfk RIR2_VACCC : 196- 204: elisr DEglHcdfA clmfk RIR2_VACCP : 196- 204: elisr DEglHcdfA clmfk RIR2_VACCV : 196- 204: elisr DEglHcdfA clmfk RIR2_VARV : 196- 204: elisr DEglHcdfA clmfk RIR2_VZVD : 192- 200: dlisr DEaiHtsaS cciyn RIR2_YEAST : 272- 280: elicr DEglHtdfA cllfa RIR4_ECOLI : 82- 89: lspna DEn-HdffS gsgss RIR4_SALTY : 291- 298: lspna DEn-HdffS gsgss B 2: 13.7385 29( 28) E-x(3,4)-F-x(0,1)-S-[AGNS] Occurences: 29(28) RIR2_ASFB7 : 128- 135: ipdek EqqriF-SG iekhp RIR2_ASFM2 : 121- 128: ipdek EqqriF-SG iekhp RIR2_BPT4 : 15- 22: vdvln Epmf-FgSG lglar RIR2_CAEEL : 224- 230: afaav Egif-F-SG sfasi RIR2_DICDI : 174- 180: afaav Egif-F-SG sfcsi RIR2_EBV : 154- 161: vflli Egif-FiSS fysia RIR2_ECOLI : 69- 76: alpeh Ekhi-FiSN lkyqt RIR2_HAEIN : 69- 76: alpeh Ekhi-FiSN lkyqt RIR2_HSV11 : 282- 289: alaai EnyvrF-SA drllg RIR2_HSV1K : 282- 289: alaai EnyvrF-SA drllg RIR2_HSV23 : 279- 286: alaai EnyvrF-SA drllg RIR2_HSVB3 : 166- 172: lmili Egif-F-SS sfaai RIR2_HSVB3 : 166- 173: lmili Egif-FsSS faaia RIR2_HSVEB : 171- 178: lmili Eglf-FaSS fasia RIR2_HSVSA : 157- 164: lfllv Egif-FiSS ffsig RIR2_HUMAN : 232- 238: afaav Egif-F-SG sfasi RIR2_MOUSE : 233- 239: afaav Egif-F-SG sfasi RIR2_SALTY : 69- 76: alpeh Ekhi-FiSN lkyqt RIR2_SCHPO : 229- 235: afaav Egif-F-SG sfasi RIR2_SPISO : 224- 230: afaav Egif-F-SG sfasi RIR2_SPVKA : 163- 169: afaav Egif-F-SG sfaai RIR2_VACCC : 163- 169: afaav Egif-F-SG sfasi RIR2_VACCP : 163- 169: afaav Egif-F-SG sfasi RIR2_VACCV : 163- 169: afaav Egif-F-SG sfasi RIR2_VARV : 163- 169: afaav Egif-F-SG sfasi RIR2_VZVD : 159- 166: lmili Egif-FvSS faaia RIR2_YEAST : 239- 245: afasi Egvf-F-SG sfasi RIR4_ECOLI : 83- 90: spnad EnhdfF-SG sgssy RIR4_ECOLI : 83- 90: spnad Enhd-FfSG sgssy RIR4_SALTY : 158- 165: asvfl Esfl-FySG fwlpm RIR4_SALTY : 292- 299: spnad EnhdfF-SG sgssy RIR4_SALTY : 292- 299: spnad Enhd-FfSG sgssy C 3: 13.6910 46( 28) A-x(1,2)-E-x(3,4)-F-x(4)-[AGLV] Occurences: 46(28) RIR2_ASFB7 : 168- 180: rlvgf AavEgil-FqnhfV aiqfl RIR2_ASFB7 : 169- 180: lvgfa Av-Egil-FqnhfV aiqfl RIR2_ASFM2 : 161- 173: rlvgf AavEgil-FqnhfV aiqfl RIR2_ASFM2 : 162- 173: lvgfa Av-Egil-FqnhfV aiqfl RIR2_BPT4 : 210- 221: lhvin Al-Eair-FyvsfA ctfnf RIR2_CAEEL : 221- 233: rliaf AavEgif-FsgsfA sifwl RIR2_CAEEL : 222- 233: liafa Av-Egif-FsgsfA sifwl RIR2_DICDI : 238- 250: endks Av-EcekeFicesL pvdli RIR2_EBV : 58- 71: lftfl AmaEklvnFnideL vtsfe RIR2_EBV : 221- 233: elfrt Av-EvetaFiearG egvtl RIR2_ECOLI : 202- 213: lmsvn Al-Eair-FyvsfA csfaf RIR2_HAEIN : 202- 213: lmsvn Al-Eair-FyvsfA csfaf RIR2_HSV11 : 254- 266: glfrq Av-EieigFirsqA ptdsh RIR2_HSV11 : 279- 292: spaal AaiEnyvrFsadrL lglih RIR2_HSV11 : 280- 292: paala Ai-EnyvrFsadrL lglih RIR2_HSV1K : 254- 266: glfrq Av-EieigFirsqA ptdsh RIR2_HSV1K : 279- 292: spaal AaiEnyvrFsadrL lglih RIR2_HSV1K : 280- 292: paala Ai-EnyvrFsadrL lglih RIR2_HSV23 : 276- 289: spgal AaiEnyvrFsadrL lglih RIR2_HSV23 : 277- 289: pgala Ai-EnyvrFsadrL lglih RIR2_HSVB3 : 57- 69: arlsg AelEfyr-FlfafL saadd RIR2_HSVEB : 62- 74: akltp AerEfyr-FlfafL saadd RIR2_HSVSA : 224- 236: klfre Av-EvefkFiaakG ygvsl RIR2_HUMAN : 229- 241: rvvaf AavEgif-FsgsfA sifwl RIR2_HUMAN : 230- 241: vvafa Av-Egif-FsgsfA sifwl RIR2_MOUSE : 230- 242: rvvaf AavEgif-FsgsfA sifwl RIR2_MOUSE : 231- 242: vvafa Av-Egif-FsgsfA sifwl RIR2_SALTY : 202- 213: lmsvn Al-Eair-FyvsfA csfaf RIR2_SCHPO : 226- 238: rlvaf AavEgif-FsgsfA sifwl RIR2_SCHPO : 227- 238: lvafa Av-Egif-FsgsfA sifwl RIR2_SPISO : 221- 233: rvvaf AavEgif-FsgsfA sifwl RIR2_SPISO : 222- 233: vvafa Av-Egif-FsgsfA sifwl RIR2_SPVKA : 160- 172: rvvaf AavEgif-FsgsfA aifwi RIR2_SPVKA : 161- 172: vvafa Av-Egif-FsgsfA aifwi RIR2_VACCC : 160- 172: rliaf AavEgif-FsgsfA sifwl RIR2_VACCC : 161- 172: liafa Av-Egif-FsgsfA sifwl RIR2_VACCP : 160- 172: rliaf AavEgif-FsgsfA sifwl RIR2_VACCP : 161- 172: liafa Av-Egif-FsgsfA sifwl RIR2_VACCV : 160- 172: rliaf AavEgif-FsgsfA sifwl RIR2_VACCV : 161- 172: liafa Av-Egif-FsgsfA sifwl RIR2_VARV : 160- 172: rliaf AavEgif-FsgsfA sifwl RIR2_VARV : 161- 172: liafa Av-Egif-FsgsfA sifwl RIR2_VZVD : 224- 236: qlfse Av-EiecaFlkshA pktrl RIR2_YEAST : 236- 248: rlvaf AsiEgvf-FsgsfA sifwl RIR4_ECOLI : 81- 92: alspn Ad-Enhd-FfsgsG ssyvm RIR4_SALTY : 290- 301: alspn Ad-Enhd-FfsgsG ssyvm D 4: 12.0102 30( 28) E-x(2,3)-F-F Occurences: 30(28) RIR2_ASFB7 : 302- 307: flnev EktnFF elrpt RIR2_ASFM2 : 295- 300: flnev EktnFF elrpt RIR2_BPT4 : 15- 19: vdvln Epm-FF gsglg RIR2_CAEEL : 149- 153: evqvs Ear-FF ygfqi RIR2_CAEEL : 224- 228: afaav Egi-FF sgsfa RIR2_DICDI : 174- 178: afaav Egi-FF sgsfc RIR2_EBV : 154- 158: vflli Egi-FF issfy RIR2_ECOLI : 15- 19: ndqlk Epm-FF gqpvn RIR2_HAEIN : 15- 19: ndqlk Epm-FF gqnvn RIR2_HSV11 : 187- 191: lmili Egi-FF aasfa RIR2_HSV1K : 187- 191: lmili Egi-FF aasfa RIR2_HSV23 : 184- 188: lmili Egv-FF aasfa RIR2_HSVB3 : 166- 170: lmili Egi-FF sssfa RIR2_HSVEB : 171- 175: lmili Egl-FF assfa RIR2_HSVSA : 157- 161: lfllv Egi-FF issff RIR2_HUMAN : 232- 236: afaav Egi-FF sgsfa RIR2_MOUSE : 233- 237: afaav Egi-FF sgsfa RIR2_SALTY : 15- 19: ndqlk Epm-FF gqpvn RIR2_SCHPO : 229- 233: afaav Egi-FF sgsfa RIR2_SPISO : 224- 228: afaav Egi-FF sgsfa RIR2_SPVKA : 163- 167: afaav Egi-FF sgsfa RIR2_VACCC : 163- 167: afaav Egi-FF sgsfa RIR2_VACCP : 163- 167: afaav Egi-FF sgsfa RIR2_VACCV : 163- 167: afaav Egi-FF sgsfa RIR2_VARV : 163- 167: afaav Egi-FF sgsfa RIR2_VZVD : 159- 163: lmili Egi-FF vssfa RIR2_YEAST : 128- 133: nnrmn EnerFF isrvl RIR2_YEAST : 239- 243: afasi Egv-FF sgsfa RIR4_ECOLI : 83- 88: spnad EnhdFF sgsgs RIR4_SALTY : 292- 297: spnad EnhdFF sgsgs E 5: 11.9308 33( 28) V-x(0,2)-N-x(1,3)-L-x-[ADEGNST] Occurences: 33(28) RIR2_ASFB7 : 80- 87: vadei VieNl--LtN fmrei RIR2_ASFM2 : 73- 80: vadei VieNl--LtN fmrei RIR2_BPT4 : 207- 213: ylclh Vi-Na--LeA irfyv RIR2_CAEEL : 55- 60: nnese V--Ne--LdA depml RIR2_CAEEL : 133- 139: asdgi V--Nen-LcE rfsne RIR2_DICDI : 84- 90: asdgi V--Nen-LaT rfmse RIR2_EBV : 64- 73: maekl VnfNideLvT sfesh RIR2_ECOLI : 200- 205: lclms V--Na--LeA irfyv RIR2_HAEIN : 200- 205: lclms V--Na--LeA irfyv RIR2_HSV11 : 97- 106: aaddl VteNlggLsG lfeqk RIR2_HSV1K : 97- 106: aaddl VteNlggLsG lfeqk RIR2_HSV23 : 94- 103: aaddl VteNlggLsG lfeqk RIR2_HSVB3 : 33- 40: lrsls Va-Nrw-LeT efpla RIR2_HSVB3 : 76- 82: aaddl V--Nvn-LgD lself RIR2_HSVB3 : 76- 85: aaddl VnvNlgdLsE lftqk RIR2_HSVB3 : 78- 85: ddlvn V--NlgdLsE lftqk RIR2_HSVEB : 38- 45: lrsls Va-Nrw-LdT dlpis RIR2_HSVEB : 81- 87: aaddl V--Nln-LgD lsalf RIR2_HSVEB : 81- 90: aaddl VnlNlgdLsA lftqk RIR2_HSVSA : 67- 76: maekl VniNiedLlS qfdsh RIR2_HUMAN : 141- 147: asdgi V--Nen-LvE rfsqe RIR2_MOUSE : 142- 148: asdgi V--Nen-LvE rfsqe RIR2_SALTY : 200- 205: lclms V--Na--LeA irfyv RIR2_SCHPO : 138- 144: asdgi V--Nen-LlE rfsse RIR2_SPISO : 133- 139: asdgi V--Nen-LvE rfske RIR2_SPVKA : 73- 79: ssdgi V--Nen-LaE rfyvd RIR2_VACCC : 73- 79: asdgi V--Nen-LaE rfcte RIR2_VACCP : 73- 79: asdgi V--Nen-LaE rfcte RIR2_VACCV : 73- 79: asdgi V--Nen-LaE rfcte RIR2_VARV : 73- 79: asdgi V--Nen-LaE rfcie RIR2_VZVD : 69- 75: aaddl V--Nvn-LgS ltqlf RIR2_YEAST : 148- 154: asdgi V--Nen-LvE nfste RIR4_ECOLI : 69- 76: aemae V--NpaiLaA lspna RIR4_SALTY : 22- 28: dkdle Vw-Nr--LtS nfwlp RIR4_SALTY : 278- 285: pemad V--NpaiLaA lspna F 6: 11.5102 67( 28) E-x(2,3)-F-x(4,5)-A Occurences: 67(28) RIR2_ASFB7 : 96- 105: eikvk EvlyFytmq-A aqecv RIR2_ASFB7 : 96- 106: eikvk EvlyFytmqaA qecvh RIR2_ASFB7 : 171- 181: gfaav EgilFqnhfvA iqflk RIR2_ASFM2 : 89- 98: eikvk EvlyFytmq-A aqecv RIR2_ASFM2 : 89- 99: eikvk EvlyFytmqaA qecvh RIR2_ASFM2 : 164- 174: gfaav EgilFqnhfvA iqflk RIR2_BPT4 : 212- 221: vinal EairFyvsf-A ctfnf RIR2_CAEEL : 115- 124: kmngd Eqy-FisrilA ffaas RIR2_CAEEL : 149- 159: evqvs EarfFygfqiA ienih RIR2_CAEEL : 191- 199: fnavd Efe-Fikkk-A dwalr RIR2_CAEEL : 224- 233: afaav EgifFsgsf-A sifwl RIR2_CAEEL : 224- 233: afaav Egi-FfsgsfA sifwl RIR2_DICDI : 66- 75: kltdn Erh-FishvlA ffaas RIR2_DICDI : 100- 110: evqip EarcFygfqiA ienih RIR2_EBV : 48- 58: nerdl EfykFlftflA maekl RIR2_ECOLI : 204- 213: svnal EairFyvsf-A csfaf RIR2_HAEIN : 204- 213: svnal EairFyvsf-A csfaf RIR2_HSV11 : 79- 88: klseg Els-FyrflfA flsaa RIR2_HSV11 : 187- 196: lmili EgifFaasf-A aiayl RIR2_HSV11 : 187- 196: lmili Egi-FfaasfA aiayl RIR2_HSV11 : 187- 197: lmili EgifFaasfaA iaylr RIR2_HSV11 : 258- 266: qavei Eig-Firsq-A ptdsh RIR2_HSV1K : 79- 88: klseg Els-FyrflfA flsaa RIR2_HSV1K : 187- 196: lmili EgifFaasf-A aiayl RIR2_HSV1K : 187- 196: lmili Egi-FfaasfA aiayl RIR2_HSV1K : 187- 197: lmili EgifFaasfaA iaylr RIR2_HSV1K : 258- 266: qavei Eig-Firsq-A ptdsh RIR2_HSV23 : 76- 85: klseg Elg-FyrflfA flsaa RIR2_HSV23 : 184- 193: lmili EgvfFaasf-A aiayl RIR2_HSV23 : 184- 193: lmili Egv-FfaasfA aiayl RIR2_HSV23 : 184- 194: lmili EgvfFaasfaA iaylr RIR2_HSV23 : 255- 263: eavdi Eig-Firsq-A ptdss RIR2_HSVB3 : 39- 48: anrwl Ete-FpladdA kdvar RIR2_HSVB3 : 58- 67: rlsga Ele-FyrflfA flsaa RIR2_HSVB3 : 166- 175: lmili EgifFsssf-A aiayl RIR2_HSVB3 : 166- 175: lmili Egi-FfsssfA aiayl RIR2_HSVB3 : 166- 176: lmili EgifFsssfaA iaylr RIR2_HSVEB : 63- 72: kltpa Ere-FyrflfA flsaa RIR2_HSVEB : 171- 180: lmili EglfFassf-A siayl RIR2_HSVEB : 171- 180: lmili Egl-FfassfA siayl RIR2_HSVEB : 242- 250: eavni Ece-Fllsh-A pqysh RIR2_HSVSA : 226- 234: freav Eve-Fkfia-A kgygv RIR2_HSVSA : 246- 255: lvnvh EirqFlqat-A drile RIR2_HUMAN : 122- 132: eslkp EeryFishvlA ffaas RIR2_HUMAN : 123- 132: slkpe Ery-FishvlA ffaas RIR2_HUMAN : 157- 167: evqit EarcFygfqiA menih RIR2_HUMAN : 232- 241: afaav EgifFsgsf-A sifwl RIR2_HUMAN : 232- 241: afaav Egi-FfsgsfA sifwl RIR2_MOUSE : 124- 133: alkpd Erh-FishvlA ffaas RIR2_MOUSE : 158- 168: evqvt EarcFygfqiA menih RIR2_MOUSE : 233- 242: afaav EgifFsgsf-A sifwl RIR2_MOUSE : 233- 242: afaav Egi-FfsgsfA sifwl RIR2_SALTY : 204- 213: svnal EairFyvsf-A csfaf RIR2_SCHPO : 85- 95: pikyh EiwqFykkaeA sfwta RIR2_SCHPO : 120- 129: klnad Ery-FistvlA yfaas RIR2_SCHPO : 229- 238: afaav EgifFsgsf-A sifwl RIR2_SCHPO : 229- 238: afaav Egi-FfsgsfA sifwl RIR2_SPISO : 114- 124: eslkk EekhFishvlA ffaas RIR2_SPISO : 115- 124: slkke Ekh-FishvlA ffaas RIR2_SPISO : 149- 159: evqvt EarcFygfqiA menih RIR2_SPISO : 224- 233: afaav EgifFsgsf-A sifwl RIR2_SPISO : 224- 233: afaav Egi-FfsgsfA sifwl RIR2_SPVKA : 55- 64: kltkd Eky-FikhilA ffass RIR2_SPVKA : 89- 99: dvqcs EarcFygfqiA menih RIR2_SPVKA : 163- 172: afaav EgifFsgsf-A aifwi RIR2_SPVKA : 163- 172: afaav Egi-FfsgsfA aifwi RIR2_SPVKA : 163- 173: afaav EgifFsgsfaA ifwik RIR2_VACCC : 55- 64: kltpd Eky-FikhvlA ffaas RIR2_VACCC : 89- 99: evqit EarcFygfqmA ienih RIR2_VACCC : 163- 172: afaav EgifFsgsf-A sifwl RIR2_VACCC : 163- 172: afaav Egi-FfsgsfA sifwl RIR2_VACCP : 55- 64: kvtpd Eky-FikhvlA ffaas RIR2_VACCP : 89- 99: evqit EarcFygfrmA ienih RIR2_VACCP : 163- 172: afaav EgifFsgsf-A sifwl RIR2_VACCP : 163- 172: afaav Egi-FfsgsfA sifwl RIR2_VACCV : 55- 64: kltpd Eky-FikhvlA ffaas RIR2_VACCV : 89- 99: evqit EarcFygfqmA ienih RIR2_VACCV : 163- 172: afaav EgifFsgsf-A sifwl RIR2_VACCV : 163- 172: afaav Egi-FfsgsfA sifwl RIR2_VARV : 55- 64: kltpd Eky-FikhvlA ffaas RIR2_VARV : 89- 99: evqit EarcFygfqmA ienih RIR2_VARV : 163- 172: afaav EgifFsgsf-A sifwl RIR2_VARV : 163- 172: afaav Egi-FfsgsfA sifwl RIR2_VZVD : 159- 168: lmili EgifFvssf-A aiayl RIR2_VZVD : 159- 168: lmili Egi-FfvssfA aiayl RIR2_VZVD : 159- 169: lmili EgifFvssfaA iaylr RIR2_VZVD : 228- 236: eavei Eca-Flksh-A pktrl RIR2_YEAST : 130- 139: rmnen Erf-FisrvlA ffaas RIR2_YEAST : 239- 248: afasi EgvfFsgsf-A sifwl RIR2_YEAST : 239- 248: afasi Egv-FfsgsfA sifwl RIR4_ECOLI : 59- 67: mnlgy Epl-Fpaem-A evnpa RIR4_SALTY : 268- 276: mnlgy Eal-Fppem-A dvnpa G 7: 11.5102 44( 28) E-x(3)-F-x(1,3)-F Occurences: 44(28) RIR2_ASFB7 : 171- 179: gfaav EgilFqnhF vaiqf RIR2_ASFM2 : 164- 172: gfaav EgilFqnhF vaiqf RIR2_BPT4 : 212- 220: vinal EairFyvsF actfn RIR2_CAEEL : 149- 156: evqvs EarfFyg-F qiaie RIR2_CAEEL : 224- 232: afaav EgifFsgsF asifw RIR2_DICDI : 100- 107: evqip EarcFyg-F qiaie RIR2_DICDI : 174- 182: afaav EgifFsgsF csifw RIR2_EBV : 48- 54: nerdl EfykFl--F tflam RIR2_EBV : 48- 56: nerdl EfykFlftF lamae RIR2_EBV : 154- 162: vflli EgifFissF ysial RIR2_ECOLI : 204- 212: svnal EairFyvsF acsfa RIR2_HAEIN : 204- 212: svnal EairFyvsF acsfa RIR2_HSV11 : 187- 195: lmili EgifFaasF aaiay RIR2_HSV1K : 187- 195: lmili EgifFaasF aaiay RIR2_HSV23 : 184- 192: lmili EgvfFaasF aaiay RIR2_HSVB3 : 60- 66: sgael EfyrFl--F aflsa RIR2_HSVB3 : 60- 68: sgael EfyrFlfaF lsaad RIR2_HSVB3 : 166- 174: lmili EgifFsssF aaiay RIR2_HSVEB : 65- 71: tpaer EfyrFl--F aflsa RIR2_HSVEB : 65- 73: tpaer EfyrFlfaF lsaad RIR2_HSVEB : 171- 179: lmili EglfFassF asiay RIR2_HSVSA : 51- 57: nerdl EfykFl--F tflgm RIR2_HSVSA : 51- 59: nerdl EfykFlftF lgmae RIR2_HSVSA : 157- 165: lfllv EgifFissF fsigl RIR2_HUMAN : 157- 164: evqit EarcFyg-F qiame RIR2_HUMAN : 232- 240: afaav EgifFsgsF asifw RIR2_MOUSE : 158- 165: evqvt EarcFyg-F qiame RIR2_MOUSE : 233- 241: afaav EgifFsgsF asifw RIR2_SALTY : 204- 212: svnal EairFyvsF acsfa RIR2_SCHPO : 229- 237: afaav EgifFsgsF asifw RIR2_SPISO : 149- 156: evqvt EarcFyg-F qiame RIR2_SPISO : 224- 232: afaav EgifFsgsF asifw RIR2_SPVKA : 89- 96: dvqcs EarcFyg-F qiame RIR2_SPVKA : 163- 171: afaav EgifFsgsF aaifw RIR2_VACCC : 89- 96: evqit EarcFyg-F qmaie RIR2_VACCC : 163- 171: afaav EgifFsgsF asifw RIR2_VACCP : 89- 96: evqit EarcFyg-F rmaie RIR2_VACCP : 163- 171: afaav EgifFsgsF asifw RIR2_VACCV : 89- 96: evqit EarcFyg-F qmaie RIR2_VACCV : 163- 171: afaav EgifFsgsF asifw RIR2_VARV : 89- 96: evqit EarcFyg-F qmaie RIR2_VARV : 163- 171: afaav EgifFsgsF asifw RIR2_VZVD : 159- 167: lmili EgifFvssF aaiay RIR2_YEAST : 164- 171: evqip EaksFyg-F qimie RIR2_YEAST : 239- 247: afasi EgvfFsgsF asifw RIR2_YEAST : 389- 395: kstkq EagaFt--F nedf RIR4_ECOLI : 8- 14: lgqre ElksFa--F dllle RIR4_SALTY : 158- 166: asvfl EsflFysgF wlpmy H 8: 11.5102 44( 28) E-x(2,3)-F-x(0,1)-F Occurences: 44(28) RIR2_ASFB7 : 302- 307: flnev EktnF-F elrpt RIR2_ASFM2 : 295- 300: flnev EktnF-F elrpt RIR2_BPT4 : 15- 19: vdvln Epm-F-F gsglg RIR2_CAEEL : 149- 153: evqvs Ear-F-F ygfqi RIR2_CAEEL : 224- 228: afaav Egi-F-F sgsfa RIR2_DICDI : 174- 178: afaav Egi-F-F sgsfc RIR2_EBV : 48- 54: nerdl EfykFlF tflam RIR2_EBV : 154- 158: vflli Egi-F-F issfy RIR2_ECOLI : 15- 19: ndqlk Epm-F-F gqpvn RIR2_HAEIN : 15- 19: ndqlk Epm-F-F gqnvn RIR2_HSV11 : 187- 191: lmili Egi-F-F aasfa RIR2_HSV1K : 187- 191: lmili Egi-F-F aasfa RIR2_HSV23 : 184- 188: lmili Egv-F-F aasfa RIR2_HSVB3 : 60- 66: sgael EfyrFlF aflsa RIR2_HSVB3 : 166- 170: lmili Egi-F-F sssfa RIR2_HSVEB : 65- 71: tpaer EfyrFlF aflsa RIR2_HSVEB : 171- 175: lmili Egl-F-F assfa RIR2_HSVSA : 51- 57: nerdl EfykFlF tflgm RIR2_HSVSA : 157- 161: lfllv Egi-F-F issff RIR2_HSVSA : 226- 231: freav Eve-FkF iaakg RIR2_HUMAN : 189- 194: ikdpk Ere-FlF naiet RIR2_HUMAN : 232- 236: afaav Egi-F-F sgsfa RIR2_HUMAN : 344- 349: kvfrv Enp-FdF menis RIR2_MOUSE : 233- 237: afaav Egi-F-F sgsfa RIR2_MOUSE : 345- 350: kifrv Enp-FdF menis RIR2_SALTY : 15- 19: ndqlk Epm-F-F gqpvn RIR2_SCHPO : 229- 233: afaav Egi-F-F sgsfa RIR2_SPISO : 181- 186: ikdpq Erd-FlF naiet RIR2_SPISO : 224- 228: afaav Egi-F-F sgsfa RIR2_SPISO : 336- 341: klynk Enp-FdF mehis RIR2_SPVKA : 163- 167: afaav Egi-F-F sgsfa RIR2_VACCC : 163- 167: afaav Egi-F-F sgsfa RIR2_VACCP : 163- 167: afaav Egi-F-F sgsfa RIR2_VACCV : 163- 167: afaav Egi-F-F sgsfa RIR2_VARV : 163- 167: afaav Egi-F-F sgsfa RIR2_VZVD : 159- 163: lmili Egi-F-F vssfa RIR2_YEAST : 128- 133: nnrmn EnerF-F isrvl RIR2_YEAST : 196- 201: ikdpk Ese-FlF naiht RIR2_YEAST : 239- 243: afasi Egv-F-F sgsfa RIR2_YEAST : 351- 356: kyykv Enp-FdF menis RIR2_YEAST : 389- 395: kstkq EagaFtF nedf RIR4_ECOLI : 8- 14: lgqre ElksFaF dllle RIR4_ECOLI : 83- 88: spnad EnhdF-F sgsgs RIR4_SALTY : 292- 297: spnad EnhdF-F sgsgs I 9: 11.0102 45( 28) L-x(2,4)-A-x(1,2)-E Occurences: 45(28) RIR2_ASFB7 : 39- 45: kkles Ltwt-Aq-E vdmck RIR2_ASFB7 : 164- 171: tlger LvgfaAv-E gilfq RIR2_ASFB7 : 164- 171: tlger Lvgf-AavE gilfq RIR2_ASFB7 : 233- 238: iihki Lke--Av-E lvdef RIR2_ASFM2 : 157- 164: slger LvgfaAv-E gilfq RIR2_ASFM2 : 157- 164: slger Lvgf-AavE gilfq RIR2_ASFM2 : 226- 231: iihki Lke--Av-E lvdef RIR2_BPT4 : 205- 212: slylc LhvinAl-E airfy RIR2_CAEEL : 185- 191: ternt Lfn--AvdE fefik RIR2_CAEEL : 217- 224: sfaer LiafaAv-E giffs RIR2_CAEEL : 217- 224: sfaer Liaf-AavE giffs RIR2_DICDI : 136- 141: qtkdk Lfn--Ai-E tipci RIR2_DICDI : 167- 174: sfaer LvafaAv-E giffs RIR2_DICDI : 167- 174: sfaer Lvaf-AavE giffs RIR2_EBV : 53- 61: efykf LftflAmaE klvnf RIR2_EBV : 217- 223: twiqe Lfrt-Av-E vetaf RIR2_ECOLI : 197- 204: klylc LmsvnAl-E airfy RIR2_ECOLI : 275- 283: qecyd LfvqaAqqE kdwad RIR2_HAEIN : 197- 204: qlylc LmsvnAl-E airfy RIR2_HAEIN : 275- 281: qeayd Lfva-Aa-E qekaw RIR2_HAEIN : 275- 281: qeayd Lfv--AaaE qekaw RIR2_HAEIN : 275- 283: qeayd LfvaaAeqE kawad RIR2_HSV11 : 250- 256: drvyg Lfrq-Av-E ieigf RIR2_HSV1K : 250- 256: drvyg Lfrq-Av-E ieigf RIR2_HSV23 : 233- 240: iynny Lggh-AkpE aarvy RIR2_HSVB3 : 54- 60: kdvar Lsg--AelE fyrfl RIR2_HSVB3 : 145- 153: rkvdw LerrvAaaE svaek RIR2_HSVEB : 59- 65: kdvak Ltp--AerE fyrfl RIR2_HSVSA : 220- 226: dwiyk Lfre-Av-E vefkf RIR2_HUMAN : 193- 198: keref Lfn--Ai-E tmpcv RIR2_MOUSE : 25- 31: splkr Ltl--AdkE ntppt RIR2_MOUSE : 194- 199: kerey Lfn--Ai-E tmpcv RIR2_SALTY : 197- 204: klylc LmsvnAl-E airfy RIR2_SALTY : 275- 283: qecyd LfvqaAqqE kewad RIR2_SCHPO : 222- 229: tyair LvafaAv-E giffs RIR2_SCHPO : 222- 229: tyair Lvaf-AavE giffs RIR2_SPISO : 101- 109: aeevd LskdmAhwE slkke RIR2_SPISO : 185- 190: qerdf Lfn--Ai-E tmpcv RIR2_SPVKA : 125- 130: iekmh Lfn--Ai-E tmecv RIR2_VACCC : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCC : 156- 163: gyger LiafaAv-E giffs RIR2_VACCC : 156- 163: gyger Liaf-AavE giffs RIR2_VACCP : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCP : 156- 163: gyger LiafaAv-E giffs RIR2_VACCP : 156- 163: gyger Liaf-AavE giffs RIR2_VACCV : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCV : 156- 163: gyger LiafaAv-E giffs RIR2_VACCV : 156- 163: gyger Liaf-AavE giffs RIR2_VARV : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VARV : 156- 163: gyger LiafaAv-E giffs RIR2_VARV : 156- 163: gyger Liaf-AavE giffs RIR2_VZVD : 220- 226: trihq Lfse-Av-E iecaf RIR2_YEAST : 232- 239: lfger Lvaf-AsiE gvffs RIR4_ECOLI : 77- 83: ailaa Lspn-Ad-E nhdff RIR4_SALTY : 207- 214: kyqia LqklsAi-E reelk RIR4_SALTY : 286- 292: ailaa Lspn-Ad-E nhdff J 10: 11.0102 42( 28) L-x(1,2)-E-x(0,2)-F Occurences: 42(28) RIR2_ASFB7 : 239- 243: keave LvdE--F inyaf RIR2_ASFM2 : 232- 236: keave LvdE--F inyaf RIR2_BPT4 : 13- 18: npvdv Ln-EpmF fgsgl RIR2_CAEEL : 137- 141: ivnen Lc-Er-F snevq RIR2_DICDI : 334- 338: srtlv Ld-Ed-F RIR2_EBV : 151- 157: kilvf LliEgiF fissf RIR2_EBV : 152- 157: ilvfl Li-EgiF fissf RIR2_ECOLI : 13- 18: tkndq Lk-EpmF fgqpv RIR2_HAEIN : 13- 18: nkndq Lk-EpmF fgqnv RIR2_HSV11 : 59- 65: ilnrw LetElvF vgdee RIR2_HSV11 : 185- 190: filmi Li-EgiF faasf RIR2_HSV1K : 59- 65: ilnrw LetElvF vgdee RIR2_HSV1K : 185- 190: filmi Li-EgiF faasf RIR2_HSV23 : 56- 62: ilnrw LetElvF vgdee RIR2_HSV23 : 182- 187: filmi Li-EgvF faasf RIR2_HSVB3 : 38- 42: vanrw LetE--F pladd RIR2_HSVB3 : 83- 87: vnlgd Ls-El-F tqkdi RIR2_HSVB3 : 164- 169: yvlmi Li-EgiF fsssf RIR2_HSVEB : 169- 174: yilmi Li-EglF fassf RIR2_HSVSA : 154- 160: killf LlvEgiF fissf RIR2_HSVSA : 155- 160: illfl Lv-EgiF fissf RIR2_HUMAN : 145- 149: ivnen Lv-Er-F sqevq RIR2_HUMAN : 331- 337: fvadr LmlElgF skvfr RIR2_MOUSE : 146- 150: ivnen Lv-Er-F sqevq RIR2_MOUSE : 332- 338: fvadr LmlElgF nkifr RIR2_SALTY : 13- 18: tkndq Lk-EpmF fgqpv RIR2_SCHPO : 6- 9: mgleh Le-E--F sypke RIR2_SCHPO : 142- 146: ivnen Ll-Er-F ssevq RIR2_SPISO : 137- 141: ivnen Lv-Er-F skevq RIR2_SPVKA : 77- 81: ivnen La-Er-F yvdvq RIR2_VACCC : 77- 81: ivnen La-Er-F ctevq RIR2_VACCC : 262- 268: fvadr LisElgF kkiyn RIR2_VACCP : 77- 81: ivnen La-Er-F ctevq RIR2_VACCP : 262- 268: fvadr LisElgF kkiyn RIR2_VACCV : 77- 81: ivnen La-Er-F ctevq RIR2_VACCV : 262- 268: fvadr LisElgF kkiyn RIR2_VARV : 77- 81: ivnen La-Er-F cievq RIR2_VARV : 262- 268: fvadr LisElgF kriyn RIR2_VZVD : 157- 162: yilmi Li-EgiF fvssf RIR2_YEAST : 152- 156: ivnen Lv-En-F stevq RIR4_ECOLI : 56- 62: kalmn LgyEplF paema RIR4_SALTY : 265- 271: kalmn LgyEalF ppema K 11: 11.0102 31( 28) E-x(3,5)-S-x(1,2)-F Occurences: 31(28) RIR2_ASFB7 : 10- 19: isnme EllienSqrF tifpi RIR2_ASFM2 : 3- 12: me EllienSqrF tifpi RIR2_BPT4 : 41- 47: feeli Erqi--Sf-F wrpee RIR2_CAEEL : 224- 232: afaav Egiff-SgsF asifw RIR2_DICDI : 174- 182: afaav Egiff-SgsF csifw RIR2_EBV : 154- 162: vflli EgiffiSs-F ysial RIR2_ECOLI : 41- 47: fekli Ekql--Sf-F wrpee RIR2_HAEIN : 41- 47: fekli Ekql--Sf-F wrpee RIR2_HSV11 : 99- 108: ddlvt EnlgglSglF eqkdi RIR2_HSV1K : 99- 108: ddlvt EnlgglSglF eqkdi RIR2_HSV23 : 96- 105: ddlvt EnlgglSglF eqkdi RIR2_HSVB3 : 166- 174: lmili EgiffsSs-F aaiay RIR2_HSVB3 : 166- 174: lmili Egiff-SssF aaiay RIR2_HSVEB : 171- 179: lmili EglffaSs-F asiay RIR2_HSVEB : 276- 283: drllg Eigl--SplF napkp RIR2_HSVSA : 72- 78: vnini Edll--Sq-F dshdi RIR2_HSVSA : 157- 165: lfllv EgiffiSs-F fsigl RIR2_HSVSA : 157- 166: lfllv EgiffiSsfF siglf RIR2_HUMAN : 232- 240: afaav Egiff-SgsF asifw RIR2_HUMAN : 334- 341: drlml Elgf--SkvF rvenp RIR2_MOUSE : 233- 241: afaav Egiff-SgsF asifw RIR2_SALTY : 41- 47: fekli Ekql--Sf-F wrpee RIR2_SCHPO : 229- 237: afaav Egiff-SgsF asifw RIR2_SPISO : 224- 232: afaav Egiff-SgsF asifw RIR2_SPVKA : 163- 171: afaav Egiff-SgsF aaifw RIR2_VACCC : 163- 171: afaav Egiff-SgsF asifw RIR2_VACCP : 163- 171: afaav Egiff-SgsF asifw RIR2_VACCV : 163- 171: afaav Egiff-SgsF asifw RIR2_VARV : 163- 171: afaav Egiff-SgsF asifw RIR2_VZVD : 159- 167: lmili EgiffvSs-F aaiay RIR2_YEAST : 239- 247: afasi Egvff-SgsF asifw RIR4_ECOLI : 7- 14: slgqr Eelk--SfaF dllle RIR4_SALTY : 158- 166: asvfl EsflfySg-F wlpmy L 12: 11.0102 57( 28) E-x(3,4)-F-x(1,3)-F Occurences: 57(28) RIR2_ASFB7 : 14- 22: eelli EnsqrFti-F piqhp RIR2_ASFB7 : 171- 179: gfaav Egil-FqnhF vaiqf RIR2_ASFM2 : 7- 15: eelli EnsqrFti-F piqhp RIR2_ASFM2 : 164- 172: gfaav Egil-FqnhF vaiqf RIR2_BPT4 : 212- 220: vinal Eair-FyvsF actfn RIR2_CAEEL : 149- 156: evqvs Earf-Fyg-F qiaie RIR2_CAEEL : 224- 232: afaav Egif-FsgsF asifw RIR2_DICDI : 17- 25: epilk EnkdrFvl-F pikyp RIR2_DICDI : 100- 107: evqip Earc-Fyg-F qiaie RIR2_DICDI : 174- 182: afaav Egif-FsgsF csifw RIR2_EBV : 44- 52: lklln ErdleFyk-F lftfl RIR2_EBV : 48- 54: nerdl Efyk-Fl--F tflam RIR2_EBV : 48- 56: nerdl Efyk-FlftF lamae RIR2_EBV : 154- 162: vflli Egif-FissF ysial RIR2_ECOLI : 204- 212: svnal Eair-FyvsF acsfa RIR2_HAEIN : 204- 212: svnal Eair-FyvsF acsfa RIR2_HSV11 : 77- 85: vskls EgelsFyr-F lfafl RIR2_HSV11 : 187- 195: lmili Egif-FaasF aaiay RIR2_HSV1K : 77- 85: vskls EgelsFyr-F lfafl RIR2_HSV1K : 187- 195: lmili Egif-FaasF aaiay RIR2_HSV23 : 74- 82: vskls EgelgFyr-F lfafl RIR2_HSV23 : 184- 192: lmili Egvf-FaasF aaiay RIR2_HSVB3 : 60- 66: sgael Efyr-Fl--F aflsa RIR2_HSVB3 : 60- 68: sgael Efyr-FlfaF lsaad RIR2_HSVB3 : 166- 174: lmili Egif-FsssF aaiay RIR2_HSVEB : 65- 71: tpaer Efyr-Fl--F aflsa RIR2_HSVEB : 65- 73: tpaer Efyr-FlfaF lsaad RIR2_HSVEB : 171- 179: lmili Eglf-FassF asiay RIR2_HSVSA : 47- 55: vdmln ErdleFyk-F lftfl RIR2_HSVSA : 51- 57: nerdl Efyk-Fl--F tflgm RIR2_HSVSA : 51- 59: nerdl Efyk-FlftF lgmae RIR2_HSVSA : 157- 165: lfllv Egif-FissF fsigl RIR2_HUMAN : 75- 83: epllr EnprrFvi-F pieyh RIR2_HUMAN : 157- 164: evqit Earc-Fyg-F qiame RIR2_HUMAN : 232- 240: afaav Egif-FsgsF asifw RIR2_MOUSE : 76- 84: epllr EnprrFvv-F pieyh RIR2_MOUSE : 158- 165: evqvt Earc-Fyg-F qiame RIR2_MOUSE : 233- 241: afaav Egif-FsgsF asifw RIR2_SALTY : 204- 212: svnal Eair-FyvsF acsfa RIR2_SCHPO : 229- 237: afaav Egif-FsgsF asifw RIR2_SPISO : 149- 156: evqvt Earc-Fyg-F qiame RIR2_SPISO : 224- 232: afaav Egif-FsgsF asifw RIR2_SPVKA : 7- 15: epilq EsdsrFvi-F pikyh RIR2_SPVKA : 89- 96: dvqcs Earc-Fyg-F qiame RIR2_SPVKA : 163- 171: afaav Egif-FsgsF aaifw RIR2_VACCC : 89- 96: evqit Earc-Fyg-F qmaie RIR2_VACCC : 163- 171: afaav Egif-FsgsF asifw RIR2_VACCP : 89- 96: evqit Earc-Fyg-F rmaie RIR2_VACCP : 163- 171: afaav Egif-FsgsF asifw RIR2_VACCV : 89- 96: evqit Earc-Fyg-F qmaie RIR2_VACCV : 163- 171: afaav Egif-FsgsF asifw RIR2_VARV : 89- 96: evqit Earc-Fyg-F qmaie RIR2_VARV : 163- 171: afaav Egif-FsgsF asifw RIR2_VZVD : 49- 57: ldclt EdeliFyr-F iftfl RIR2_VZVD : 159- 167: lmili Egif-FvssF aaiay RIR2_YEAST : 164- 171: evqip Eaks-Fyg-F qimie RIR2_YEAST : 239- 247: afasi Egvf-FsgsF asifw RIR2_YEAST : 389- 395: kstkq Eaga-Ft--F nedf RIR4_ECOLI : 7- 14: slgqr EelksFa--F dllle RIR4_ECOLI : 8- 14: lgqre Elks-Fa--F dllle RIR4_SALTY : 158- 166: asvfl Esfl-FysgF wlpmy M 13: 10.5102 41( 28) E-x(3,5)-V-x(2,4)-I Occurences: 41(28) RIR2_ASFB7 : 113- 123: ecvhs EaysiqVktl-I pdeke RIR2_ASFB7 : 235- 244: hkilk Eavel-Vdef-I nyafd RIR2_ASFM2 : 106- 116: ecvhs EaysiqVktl-I pdeke RIR2_ASFM2 : 228- 237: hkilk Eavel-Vdef-I nyafd RIR2_BPT4 : 363- 372: apqev ElssylVaq--I dndvd RIR2_CAEEL : 298- 305: qeflt Ealp--Vdm--I gmncr RIR2_DICDI : 17- 27: epilk EnkdrfVlfp-I kypdi RIR2_DICDI : 248- 255: kefic Eslp--Vdl--I gmnsr RIR2_EBV : 145- 153: avtlp Ekil--Vfll-I egiff RIR2_EBV : 234- 244: iearg Egvtl-VdvraI kqfle RIR2_ECOLI : 51- 60: ffwrp Eevd--VsrdrI dyqal RIR2_ECOLI : 352- 361: apqev EvssylVgq--I dsevd RIR2_HAEIN : 51- 60: ffwrp Eevd--VsqdrI dyaal RIR2_HAEIN : 352- 361: apqev EvssylVgq--I dskvd RIR2_HSV11 : 124- 133: eqeci EvvhsrVyn--I iqlvl RIR2_HSV11 : 124- 134: eqeci EvvhsrVyni-I qlvlf RIR2_HSV11 : 172- 181: earvr Ecas--VpekfI lmili RIR2_HSV1K : 124- 133: eqeci EvahsrVyn--I iqlvl RIR2_HSV1K : 124- 134: eqeci EvahsrVyni-I qlvlf RIR2_HSV1K : 172- 181: earvr Ecas--VpekfI lmili RIR2_HSV23 : 121- 130: eqeci EvvhsrVyn--I iqlvl RIR2_HSV23 : 121- 131: eqeci EvvhsrVyni-I qlvlf RIR2_HSVB3 : 103- 113: eqesi EvvhsrVysa-I qlllf RIR2_HSVEB : 108- 118: eqesi EvthsrVysa-I qlmlf RIR2_HSVEB : 156- 165: qakvr Ecgs--VaekyI lmili RIR2_HSVSA : 94- 104: eqmam EnihgkVyan-I lnmlf RIR2_HSVSA : 223- 232: yklfr Eave--VefkfI aakgy RIR2_HUMAN : 75- 85: epllr EnprrfVifp-I eyhdi RIR2_HUMAN : 306- 313: qeflt Ealp--Vkl--I gmnct RIR2_MOUSE : 76- 86: epllr EnprrfVvfp-I eyhdi RIR2_MOUSE : 307- 314: qeflt Ealp--Vkl--I gmnct RIR2_SALTY : 51- 60: ffwrp Eevd--VsrdrI dyqal RIR2_SALTY : 352- 361: apqev EvssylVgq--I dsevd RIR2_SCHPO : 154- 163: evqip Earc--VygfqI mieni RIR2_SPISO : 25- 35: mkite EnkpkkVlge-I tnfqr RIR2_SPVKA : 7- 17: epilq EsdsrfVifp-I kyhdi RIR2_VACCC : 30- 41: mykka EasfwtVeevdI skdin RIR2_VACCP : 30- 41: mykka EasfwtVeevdI skdin RIR2_VACCV : 30- 41: mykka EasfwtVeevdI skdin RIR2_VARV : 30- 41: mykka EasfwtVeevdI skdin RIR2_VZVD : 96- 106: eqeci EvvharVysq-I qlmlf RIR2_YEAST : 81- 91: eplln EdkertVlfp-I kyhei RIR4_ECOLI : 65- 73: plfpa Emae--Vnpa-I laals RIR4_SALTY : 274- 282: alfpp Emad--Vnpa-I laals N 14: 10.5102 43( 28) E-x(3,5)-V-x(1,3)-I Occurences: 43(28) RIR2_ASFB7 : 113- 123: ecvhs EaysiqVktlI pdeke RIR2_ASFB7 : 235- 244: hkilk Eavel-VdefI nyafd RIR2_ASFM2 : 106- 116: ecvhs EaysiqVktlI pdeke RIR2_ASFM2 : 228- 237: hkilk Eavel-VdefI nyafd RIR2_BPT4 : 276- 284: vkiaq EceqeaVd--I fmevn RIR2_BPT4 : 278- 284: iaqec Eqea--Vd--I fmevn RIR2_BPT4 : 363- 372: apqev ElssylVaq-I dndvd RIR2_CAEEL : 298- 305: qeflt Ealp--Vdm-I gmncr RIR2_DICDI : 17- 27: epilk EnkdrfVlfpI kypdi RIR2_DICDI : 248- 255: kefic Eslp--Vdl-I gmnsr RIR2_DICDI : 310- 318: egkva EyaktgVa--I qgnnq RIR2_EBV : 145- 153: avtlp Ekil--VfllI egiff RIR2_ECOLI : 352- 361: apqev EvssylVgq-I dsevd RIR2_HAEIN : 352- 361: apqev EvssylVgq-I dskvd RIR2_HSV11 : 124- 133: eqeci EvvhsrVyn-I iqlvl RIR2_HSV11 : 124- 134: eqeci EvvhsrVyniI qlvlf RIR2_HSV1K : 124- 133: eqeci EvahsrVyn-I iqlvl RIR2_HSV1K : 124- 134: eqeci EvahsrVyniI qlvlf RIR2_HSV23 : 121- 130: eqeci EvvhsrVyn-I iqlvl RIR2_HSV23 : 121- 131: eqeci EvvhsrVyniI qlvlf RIR2_HSVB3 : 103- 113: eqesi EvvhsrVysaI qlllf RIR2_HSVEB : 108- 118: eqesi EvthsrVysaI qlmlf RIR2_HSVEB : 233- 241: pkriy ElfseaVn--I ecefl RIR2_HSVSA : 94- 104: eqmam EnihgkVyanI lnmlf RIR2_HUMAN : 75- 85: epllr EnprrfVifpI eyhdi RIR2_HUMAN : 147- 155: nenlv ErfsqeVq--I tearc RIR2_HUMAN : 291- 299: eervr EiiinaVr--I eqefl RIR2_HUMAN : 306- 313: qeflt Ealp--Vkl-I gmnct RIR2_MOUSE : 76- 86: epllr EnprrfVvfpI eyhdi RIR2_MOUSE : 292- 300: eqrvr EiitnaVr--I eqefl RIR2_MOUSE : 307- 314: qeflt Ealp--Vkl-I gmnct RIR2_SALTY : 352- 361: apqev EvssylVgq-I dsevd RIR2_SCHPO : 144- 152: nenll ErfsseVq--I pearc RIR2_SPISO : 25- 35: mkite EnkpkkVlgeI tnfqr RIR2_SPVKA : 7- 17: epilq EsdsrfVifpI kyhdi RIR2_SPVKA : 231- 239: davni EkefltVa--I pvdli RIR2_SPVKA : 233- 239: vniek Eflt--Va--I pvdli RIR2_VACCC : 79- 87: nenla ErfcteVq--I tearc RIR2_VACCP : 79- 87: nenla ErfcteVq--I tearc RIR2_VACCV : 79- 87: nenla ErfcteVq--I tearc RIR2_VARV : 79- 87: nenla ErfcieVq--I tearc RIR2_VZVD : 96- 106: eqeci EvvharVysqI qlmlf RIR2_YEAST : 81- 91: eplln EdkertVlfpI kyhei RIR2_YEAST : 154- 162: nenlv EnfsteVq--I peaks RIR4_ECOLI : 65- 73: plfpa Emae--VnpaI laals RIR4_SALTY : 274- 282: alfpp Emad--VnpaI laals O 15: 10.5102 53( 28) L-x(2,4)-A-x(0,2)-E Occurences: 53(28) RIR2_ASFB7 : 39- 45: kkles Ltwt-Aq-E vdmck RIR2_ASFB7 : 164- 171: tlger LvgfaAv-E gilfq RIR2_ASFB7 : 164- 171: tlger Lvgf-AavE gilfq RIR2_ASFB7 : 233- 238: iihki Lke--Av-E lvdef RIR2_ASFM2 : 157- 164: slger LvgfaAv-E gilfq RIR2_ASFM2 : 157- 164: slger Lvgf-AavE gilfq RIR2_ASFM2 : 226- 231: iihki Lke--Av-E lvdef RIR2_BPT4 : 205- 212: slylc LhvinAl-E airfy RIR2_CAEEL : 185- 191: ternt Lfn--AvdE fefik RIR2_CAEEL : 217- 224: sfaer LiafaAv-E giffs RIR2_CAEEL : 217- 224: sfaer Liaf-AavE giffs RIR2_DICDI : 136- 141: qtkdk Lfn--Ai-E tipci RIR2_DICDI : 167- 174: sfaer LvafaAv-E giffs RIR2_DICDI : 167- 174: sfaer Lvaf-AavE giffs RIR2_EBV : 53- 61: efykf LftflAmaE klvnf RIR2_EBV : 57- 61: flftf Lam--A--E klvnf RIR2_EBV : 217- 223: twiqe Lfrt-Av-E vetaf RIR2_ECOLI : 197- 204: klylc LmsvnAl-E airfy RIR2_ECOLI : 275- 283: qecyd LfvqaAqqE kdwad RIR2_HAEIN : 197- 204: qlylc LmsvnAl-E airfy RIR2_HAEIN : 275- 281: qeayd LfvaaA--E qekaw RIR2_HAEIN : 275- 281: qeayd Lfva-Aa-E qekaw RIR2_HAEIN : 275- 281: qeayd Lfv--AaaE qekaw RIR2_HAEIN : 275- 283: qeayd LfvaaAeqE kawad RIR2_HSV11 : 250- 256: drvyg Lfrq-Av-E ieigf RIR2_HSV1K : 250- 256: drvyg Lfrq-Av-E ieigf RIR2_HSV23 : 233- 240: iynny Lggh-AkpE aarvy RIR2_HSVB3 : 54- 58: kdvar Lsg--A--E lefyr RIR2_HSVB3 : 54- 60: kdvar Lsg--AelE fyrfl RIR2_HSVB3 : 145- 153: rkvdw LerrvAaaE svaek RIR2_HSVB3 : 287- 293: gtdfp LalmtA--E khtnf RIR2_HSVB3 : 289- 293: dfpla Lmt--A--E khtnf RIR2_HSVEB : 59- 63: kdvak Ltp--A--E refyr RIR2_HSVEB : 59- 65: kdvak Ltp--AerE fyrfl RIR2_HSVSA : 60- 64: flftf Lgm--A--E klvni RIR2_HSVSA : 220- 226: dwiyk Lfre-Av-E vefkf RIR2_HUMAN : 193- 198: keref Lfn--Ai-E tmpcv RIR2_MOUSE : 25- 31: splkr Ltl--AdkE ntppt RIR2_MOUSE : 194- 199: kerey Lfn--Ai-E tmpcv RIR2_MOUSE : 281- 287: lmfkh LvhkpA--E qrvre RIR2_SALTY : 197- 204: klylc LmsvnAl-E airfy RIR2_SALTY : 275- 283: qecyd LfvqaAqqE kewad RIR2_SCHPO : 222- 229: tyair LvafaAv-E giffs RIR2_SCHPO : 222- 229: tyair Lvaf-AavE giffs RIR2_SPISO : 101- 109: aeevd LskdmAhwE slkke RIR2_SPISO : 185- 190: qerdf Lfn--Ai-E tmpcv RIR2_SPVKA : 125- 130: iekmh Lfn--Ai-E tmecv RIR2_VACCC : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCC : 156- 163: gyger LiafaAv-E giffs RIR2_VACCC : 156- 163: gyger Liaf-AavE giffs RIR2_VACCP : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCP : 156- 163: gyger LiafaAv-E giffs RIR2_VACCP : 156- 163: gyger Liaf-AavE giffs RIR2_VACCV : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VACCV : 156- 163: gyger LiafaAv-E giffs RIR2_VACCV : 156- 163: gyger Liaf-AavE giffs RIR2_VARV : 125- 130: nekny Lfn--Ai-E tmpcv RIR2_VARV : 156- 163: gyger LiafaAv-E giffs RIR2_VARV : 156- 163: gyger Liaf-AavE giffs RIR2_VZVD : 220- 226: trihq Lfse-Av-E iecaf RIR2_YEAST : 48- 53: mlkek Lskd-A--E nhkay RIR2_YEAST : 232- 239: lfger Lvaf-AsiE gvffs RIR4_ECOLI : 61- 65: lgyep Lfp--A--E maevn RIR4_ECOLI : 77- 83: ailaa Lspn-Ad-E nhdff RIR4_SALTY : 48- 52: pawqt Lsa--A--E qqlti RIR4_SALTY : 207- 214: kyqia LqklsAi-E reelk RIR4_SALTY : 286- 292: ailaa Lspn-Ad-E nhdff P 16: 10.5102 50( 28) L-x(2,4)-A-x(1,3)-E Occurences: 50(28) RIR2_ASFB7 : 39- 45: kkles Ltwt-Aq--E vdmck RIR2_ASFB7 : 164- 171: tlger LvgfaAv--E gilfq RIR2_ASFB7 : 164- 171: tlger Lvgf-Aav-E gilfq RIR2_ASFB7 : 233- 238: iihki Lke--Av--E lvdef RIR2_ASFM2 : 157- 164: slger LvgfaAv--E gilfq RIR2_ASFM2 : 157- 164: slger Lvgf-Aav-E gilfq RIR2_ASFM2 : 226- 231: iihki Lke--Av--E lvdef RIR2_BPT4 : 205- 212: slylc LhvinAl--E airfy RIR2_CAEEL : 185- 191: ternt Lfn--Avd-E fefik RIR2_CAEEL : 217- 224: sfaer LiafaAv--E giffs RIR2_CAEEL : 217- 224: sfaer Liaf-Aav-E giffs RIR2_DICDI : 136- 141: qtkdk Lfn--Ai--E tipci RIR2_DICDI : 167- 174: sfaer LvafaAv--E giffs RIR2_DICDI : 167- 174: sfaer Lvaf-Aav-E giffs RIR2_EBV : 53- 61: efykf LftflAma-E klvnf RIR2_EBV : 217- 223: twiqe Lfrt-Av--E vetaf RIR2_EBV : 217- 225: twiqe Lfrt-AvevE tafie RIR2_ECOLI : 197- 204: klylc LmsvnAl--E airfy RIR2_ECOLI : 251- 260: qhmln LlrsgAddpE maeia RIR2_ECOLI : 252- 260: hmlnl Lrsg-AddpE maeia RIR2_ECOLI : 275- 283: qecyd LfvqaAqq-E kdwad RIR2_ECOLI : 275- 283: qecyd Lfvq-AaqqE kdwad RIR2_HAEIN : 197- 204: qlylc LmsvnAl--E airfy RIR2_HAEIN : 275- 281: qeayd Lfva-Aa--E qekaw RIR2_HAEIN : 275- 281: qeayd Lfv--Aaa-E qekaw RIR2_HAEIN : 275- 283: qeayd LfvaaAeq-E kawad RIR2_HAEIN : 275- 283: qeayd Lfva-AaeqE kawad RIR2_HSV11 : 250- 256: drvyg Lfrq-Av--E ieigf RIR2_HSV11 : 250- 258: drvyg Lfrq-AveiE igfir RIR2_HSV1K : 250- 256: drvyg Lfrq-Av--E ieigf RIR2_HSV1K : 250- 258: drvyg Lfrq-AveiE igfir RIR2_HSV23 : 233- 240: iynny Lggh-Akp-E aarvy RIR2_HSV23 : 247- 255: arvyr Lfre-AvdiE igfir RIR2_HSVB3 : 54- 60: kdvar Lsg--Ael-E fyrfl RIR2_HSVB3 : 145- 153: rkvdw LerrvAaa-E svaek RIR2_HSVEB : 59- 65: kdvak Ltp--Aer-E fyrfl RIR2_HSVEB : 234- 242: kriye Lfse-AvniE cefll RIR2_HSVSA : 220- 226: dwiyk Lfre-Av--E vefkf RIR2_HSVSA : 220- 228: dwiyk Lfre-AvevE fkfia RIR2_HUMAN : 193- 198: keref Lfn--Ai--E tmpcv RIR2_MOUSE : 25- 31: splkr Ltl--Adk-E ntppt RIR2_MOUSE : 194- 199: kerey Lfn--Ai--E tmpcv RIR2_SALTY : 197- 204: klylc LmsvnAl--E airfy RIR2_SALTY : 275- 283: qecyd LfvqaAqq-E kewad RIR2_SALTY : 275- 283: qecyd Lfvq-AaqqE kewad RIR2_SCHPO : 222- 229: tyair LvafaAv--E giffs RIR2_SCHPO : 222- 229: tyair Lvaf-Aav-E giffs RIR2_SPISO : 101- 109: aeevd LskdmAhw-E slkke RIR2_SPISO : 185- 190: qerdf Lfn--Ai--E tmpcv RIR2_SPVKA : 125- 130: iekmh Lfn--Ai--E tmecv RIR2_VACCC : 125- 130: nekny Lfn--Ai--E tmpcv RIR2_VACCC : 156- 163: gyger LiafaAv--E giffs RIR2_VACCC : 156- 163: gyger Liaf-Aav-E giffs RIR2_VACCP : 125- 130: nekny Lfn--Ai--E tmpcv RIR2_VACCP : 156- 163: gyger LiafaAv--E giffs RIR2_VACCP : 156- 163: gyger Liaf-Aav-E giffs RIR2_VACCV : 125- 130: nekny Lfn--Ai--E tmpcv RIR2_VACCV : 156- 163: gyger LiafaAv--E giffs RIR2_VACCV : 156- 163: gyger Liaf-Aav-E giffs RIR2_VARV : 125- 130: nekny Lfn--Ai--E tmpcv RIR2_VARV : 156- 163: gyger LiafaAv--E giffs RIR2_VARV : 156- 163: gyger Liaf-Aav-E giffs RIR2_VZVD : 220- 226: trihq Lfse-Av--E iecaf RIR2_VZVD : 220- 228: trihq Lfse-AveiE caflk RIR2_YEAST : 232- 239: lfger Lvaf-Asi-E gvffs RIR4_ECOLI : 61- 68: lgyep Lfp--AemaE vnpai RIR4_ECOLI : 77- 83: ailaa Lspn-Ad--E nhdff RIR4_SALTY : 207- 214: kyqia LqklsAi--E reelk RIR4_SALTY : 207- 216: kyqia LqklsAierE elklf RIR4_SALTY : 286- 292: ailaa Lspn-Ad--E nhdff Q 17: 10.5102 60( 28) L-x(1,3)-L-x(0,2)-G Occurences: 60(28) RIR2_ASFB7 : 160- 166: pdrnt LgerLv-G faave RIR2_ASFM2 : 153- 159: parns LgerLv-G faave RIR2_BPT4 : 249- 253: ardeq Lh--Lk-G tqyii RIR2_CAEEL : 323- 328: fvadh LlveL--G cdkly RIR2_CAEEL : 324- 328: vadhl Lve-L--G cdkly RIR2_DICDI : 250- 256: fices LpvdLi-G mnsrs RIR2_DICDI : 273- 278: fcadr LvvsL--G ykkif RIR2_EBV : 102- 108: tyani Lnm-LfdG draam RIR2_EBV : 148- 155: lpeki LvflLieG iffis RIR2_ECOLI : 240- 244: ardea Lh--Lt-G tqhml RIR2_ECOLI : 249- 255: gtqhm Lnl-LrsG addpe RIR2_HAEIN : 166- 171: irdsq Lyg-Ly-G egtyt RIR2_HAEIN : 240- 244: ardea Lh--Lt-G tqhil RIR2_HSV11 : 101- 106: lvten Lgg-Ls-G lfeqk RIR2_HSV11 : 182- 188: pekfi Lmi-LieG iffaa RIR2_HSV1K : 101- 106: lvten Lgg-Ls-G lfeqk RIR2_HSV1K : 182- 188: pekfi Lmi-LieG iffaa RIR2_HSV23 : 98- 103: lvten Lgg-Ls-G lfeqk RIR2_HSV23 : 179- 185: pekfi Lmi-LieG vffaa RIR2_HSVB3 : 161- 167: aekyv Lmi-LieG iffss RIR2_HSVB3 : 235- 241: reawk LsasLf-G caprg RIR2_HSVB3 : 272- 277: laaiq Lpp-Lf-G tpppg RIR2_HSVEB : 15- 19: altae Ls--La-G affyt RIR2_HSVEB : 80- 86: saadd Lvn-LnlG dlsal RIR2_HSVEB : 83- 86: ddlvn Ln--L--G dlsal RIR2_HSVEB : 120- 124: ysaiq Lm--Lf-G ndaaa RIR2_HSVEB : 166- 172: aekyi Lmi-LieG lffas RIR2_HSVSA : 56- 61: efykf LftfL--G maekl RIR2_HSVSA : 133- 138: alqek Lrw-Ln-G rvtea RIR2_HSVSA : 151- 158: kaeki LlflLveG iffis RIR2_HSVSA : 152- 158: aekil Lfl-LveG iffis RIR2_HUMAN : 19- 24: pqqlq Lsp-Lk-G lslvd RIR2_HUMAN : 308- 314: fltea LpvkLi-G mnctl RIR2_HUMAN : 331- 336: fvadr LmleL--G fskvf RIR2_HUMAN : 331- 336: fvadr Lm--LelG fskvf RIR2_HUMAN : 333- 336: adrlm Le--L--G fskvf RIR2_MOUSE : 309- 315: fltea LpvkLi-G mnctl RIR2_MOUSE : 332- 337: fvadr LmleL--G fnkif RIR2_MOUSE : 332- 337: fvadr Lm--LelG fnkif RIR2_MOUSE : 334- 337: adrlm Le--L--G fnkif RIR2_SALTY : 240- 244: ardea Lh--Lt-G tqhml RIR2_SALTY : 249- 255: gtqhm Lnl-LrsG vddpe RIR2_SCHPO : 305- 311: yftda LpvsLl-G mnkdl RIR2_SCHPO : 328- 333: fvadr LlvaL--G ndkyy RIR2_SCHPO : 329- 333: vadrl Lva-L--G ndkyy RIR2_SPISO : 13- 18: rkene LsgnL--G kmkit RIR2_SPISO : 300- 306: fltea LpcrLi-G mncdl RIR2_SPVKA : 262- 267: fvadr LlteL--G ceksq RIR2_SPVKA : 263- 267: vadrl Lte-L--G ceksq RIR2_VACCC : 239- 245: fltaa LpvkLi-G mncem RIR2_VACCC : 262- 267: fvadr LiseL--G fkkiy RIR2_VACCP : 239- 245: fltaa LpvkLi-G mncem RIR2_VACCP : 262- 267: fvadr LiseL--G fkkiy RIR2_VACCV : 239- 245: fltaa LpvkLi-G mncem RIR2_VACCV : 262- 267: fvadr LiseL--G fkkiy RIR2_VARV : 239- 245: fltva LpvkLi-G mncem RIR2_VARV : 262- 267: fvadr LiseL--G fkriy RIR2_VZVD : 108- 113: ysqiq Lm--LfrG deslr RIR2_VZVD : 154- 160: aekyi Lmi-LieG iffvs RIR2_YEAST : 315- 321: yflda LpvaLl-G mnadl RIR4_ECOLI : 53- 57: nanka Lmn-L--G yeplf RIR4_SALTY : 262- 266: nanka Lmn-L--G yealf R 18: 10.5102 67( 28) A-x(2,4)-L-x(1,3)-L Occurences: 67(28) RIR2_ASFB7 : 322- 329: cvkdd AfafkLf--L ndddf RIR2_ASFB7 : 324- 329: kddaf Afk--Lf--L ndddf RIR2_ASFM2 : 149- 157: qwmdp Arns-LgerL vgfaa RIR2_ASFM2 : 315- 322: cvkdd AfafkLf--L ddddf RIR2_ASFM2 : 317- 322: kddaf Afk--Lf--L ddddf RIR2_BPT4 : 90- 98: siqgr ApsavLms-L isdps RIR2_BPT4 : 193- 201: dveqr Akrd-LmksL ylclh RIR2_BPT4 : 244- 251: imkfi ArdeqLh--L kgtqy RIR2_CAEEL : 60- 68: vneld AdepmLqd-L dnrfv RIR2_CAEEL : 265- 272: lhrdf Acl--LyskL qkklt RIR2_CAEEL : 320- 327: yiefv Adhl-Lve-L gcdkl RIR2_CAEEL : 320- 327: yiefv Adh--LlveL gcdkl RIR2_DICDI : 215- 222: lhcdf Acl--LytkL qrkld RIR2_DICDI : 270- 277: yiefc Adr--LvvsL gykki RIR2_EBV : 99- 105: hgety Ani--Lnm-L fdgdr RIR2_ECOLI : 235- 242: iirli ArdeaLh--L tgtqh RIR2_ECOLI : 318- 323: nirmq Avg--Ld--L pfqtr RIR2_HAEIN : 235- 242: iikfi ArdeaLh--L tgtqh RIR2_HAEIN : 318- 323: nirmq Avg--Lp--L pfqtr RIR2_HSV11 : 4- 12: mds Aapa-LspaL taltd RIR2_HSV11 : 5- 12: mdsa Apa--LspaL taltd RIR2_HSV11 : 7- 15: dsaap AlspaLta-L tdqsa RIR2_HSV11 : 289- 295: yvrfs Adrl-Lg--L ihmkp RIR2_HSV11 : 289- 295: yvrfs Adr--Llg-L ihmkp RIR2_HSV11 : 309- 315: apppd Asfp-Ls--L mstdk RIR2_HSV1K : 4- 12: mds Aapa-LspaL tahtg RIR2_HSV1K : 5- 12: mdsa Apa--LspaL tahtg RIR2_HSV1K : 289- 295: yvrfs Adrl-Lg--L ihmkp RIR2_HSV1K : 289- 295: yvrfs Adr--Llg-L ihmkp RIR2_HSV1K : 309- 315: apppd Asfp-Ls--L mstdk RIR2_HSV23 : 286- 292: yvrfs Adrl-Lg--L ihmqp RIR2_HSV23 : 286- 292: yvrfs Adr--Llg-L ihmqp RIR2_HSV23 : 306- 312: apapd Asfp-Ls--L mstdk RIR2_HSVB3 : 112- 117: srvys Aiq--Ll--L frnda RIR2_HSVB3 : 156- 164: aaesv AekyvLmi-L iegif RIR2_HSVB3 : 232- 239: elfre Awk--LsasL fgcap RIR2_HSVB3 : 268- 275: adrll Aaiq-Lpp-L fgtpp RIR2_HSVB3 : 269- 275: drlla Aiq--Lpp-L fgtpp RIR2_HSVEB : 10- 17: nskea AltaeLs--L agaff RIR2_HSVEB : 39- 47: rslsv Anrw-LdtdL pisdd RIR2_HSVEB : 76- 83: fafls Aadd-Lvn-L nlgdl RIR2_HSVEB : 77- 83: aflsa Add--Lvn-L nlgdl RIR2_HSVEB : 117- 122: srvys Aiq--Lm--L fgnda RIR2_HSVEB : 161- 169: ecgsv AekyiLmi-L ieglf RIR2_HSVEB : 312- 321: errst AysgtLindL RIR2_HSVSA : 102- 108: hgkvy Ani--Lnm-L fknni RIR2_HSVSA : 128- 136: imnds AlqekLrw-L ngrvt RIR2_HSVSA : 147- 154: easdk AekilLf--L lvegi RIR2_HSVSA : 147- 154: easdk Aeki-Llf-L lvegi RIR2_HSVSA : 147- 155: easdk AekilLfl-L vegif RIR2_HSVSA : 147- 155: easdk Aeki-LlflL vegif RIR2_HUMAN : 328- 333: yiefv Adr--Lm--L elgfs RIR2_HUMAN : 328- 335: yiefv AdrlmLe--L gfskv RIR2_HUMAN : 328- 335: yiefv Adr--LmleL gfskv RIR2_MOUSE : 12- 19: plati AdqqqLq--L splkr RIR2_MOUSE : 329- 334: yiefv Adr--Lm--L elgfn RIR2_MOUSE : 329- 336: yiefv AdrlmLe--L gfnki RIR2_MOUSE : 329- 336: yiefv Adr--LmleL gfnki RIR2_SALTY : 235- 242: iirli ArdeaLh--L tgtqh RIR2_SALTY : 318- 323: nirmq Avg--Ld--L pfqtr RIR2_SCHPO : 100- 109: asfwt AeeidLskdL vdwdn RIR2_SCHPO : 325- 332: yiefv Adrl-Lva-L gndky RIR2_SCHPO : 325- 332: yiefv Adr--LlvaL gndky RIR2_SPISO : 320- 325: yiefv Adr--Ll--L elkcd RIR2_SPISO : 320- 327: yiefv AdrllLe--L kcdkl RIR2_SPISO : 320- 327: yiefv Adrl-Lle-L kcdkl RIR2_SPISO : 320- 327: yiefv Adr--LlleL kcdkl RIR2_SPVKA : 259- 266: yiefv Adrl-Lte-L gceks RIR2_SPVKA : 259- 266: yiefv Adr--LlteL gceks RIR2_VACCC : 259- 266: yiefv Adr--LiseL gfkki RIR2_VACCP : 259- 266: yiefv Adr--LiseL gfkki RIR2_VACCV : 259- 266: yiefv Adr--LiseL gfkki RIR2_VARV : 259- 266: ymefv Adr--LiseL gfkri RIR2_VZVD : 149- 157: dnpsv AekyiLmi-L iegif RIR2_YEAST : 9- 17: etpsk AaadaLsd-L eikds RIR2_YEAST : 10- 17: tpska Aada-Lsd-L eikds RIR2_YEAST : 11- 17: pskaa Ada--Lsd-L eikds RIR2_YEAST : 280- 287: lhtdf Acl--LfahL knkpd RIR4_ECOLI : 13- 18: elksf Afd--Ll--L elydn RIR4_ECOLI : 13- 20: elksf AfdllLe--L ydnel RIR4_ECOLI : 13- 20: elksf Afdl-Lle-L ydnel RIR4_ECOLI : 13- 20: elksf Afd--LlleL ydnel RIR4_ECOLI : 49- 56: flcyn Anka-Lmn-L gyepl RIR4_SALTY : 153- 161: lkkki Asvf-LesfL fysgf RIR4_SALTY : 222- 229: elklf Aldl-Lme-L ydnei RIR4_SALTY : 222- 229: elklf Ald--LlmeL ydnei RIR4_SALTY : 258- 265: flcyn Anka-Lmn-L gyeal S 19: 10.5102 50( 28) L-x(0,2)-F-x(1,3)-D Occurences: 50(28) RIR2_ASFB7 : 70- 77: fykqi LafFvvaD eivie RIR2_ASFB7 : 327- 331: afafk L--Fln-D ddf RIR2_ASFB7 : 327- 332: afafk L--FlndD df RIR2_ASFM2 : 63- 70: fykqi LafFvvaD eivie RIR2_ASFM2 : 320- 323: afafk L--Fl--D dddf RIR2_ASFM2 : 320- 324: afafk L--Fld-D ddf RIR2_ASFM2 : 320- 325: afafk L--FlddD df RIR2_BPT4 : 299- 302: dwavh L--Fk--D gdvpg RIR2_BPT4 : 299- 304: dwavh L--FkdgD vpgln RIR2_CAEEL : 123- 130: fisri LafFaasD givne RIR2_CAEEL : 185- 190: ternt L--FnavD efefi RIR2_DICDI : 74- 81: fishv LafFaasD givne RIR2_EBV : 63- 69: amaek LvnFni-D elvts RIR2_EBV : 105- 109: nilnm L--Fdg-D raamn RIR2_ECOLI : 290- 293: dwady L--Fr--D gsmig RIR2_HAEIN : 290- 293: awady L--Fk--D gsmig RIR2_HSV11 : 63- 68: wlete Lv-Fvg-D eedvs RIR2_HSV11 : 107- 112: gglsg L--FeqkD ilhyy RIR2_HSV11 : 136- 143: yniiq LvlFhnnD qarre RIR2_HSV11 : 138- 143: iiqlv L--FhnnD qarre RIR2_HSV1K : 63- 68: wlete Lv-Fvg-D eedvs RIR2_HSV1K : 107- 112: gglsg L--FeqkD ilhyy RIR2_HSV1K : 136- 143: yniiq LvlFhnnD qarre RIR2_HSV1K : 138- 143: iiqlv L--FhnnD qarre RIR2_HSV23 : 60- 65: wlete Lv-Fvg-D eedvs RIR2_HSV23 : 104- 109: gglsg L--FeqkD ilhyy RIR2_HSV23 : 133- 140: yniiq LvlFhnnD qarra RIR2_HSV23 : 135- 140: iiqlv L--FhnnD qarra RIR2_HSVB3 : 86- 91: gdlse L--FtqkD ilhyy RIR2_HSVB3 : 115- 121: ysaiq LllFrn-D avara RIR2_HSVB3 : 116- 121: saiql Ll-Frn-D avara RIR2_HSVB3 : 117- 121: aiqll L--Frn-D avara RIR2_HSVEB : 91- 96: gdlsa L--FtqkD ilhyy RIR2_HSVEB : 120- 126: ysaiq LmlFgn-D aaara RIR2_HSVEB : 122- 126: aiqlm L--Fgn-D aaara RIR2_HSVSA : 75- 82: niedl LsqFdshD ishyy RIR2_HUMAN : 131- 138: fishv LafFaasD givne RIR2_MOUSE : 132- 139: fishv LafFaasD givne RIR2_SALTY : 290- 293: ewady L--Fr--D gsmig RIR2_SCHPO : 128- 135: fistv LayFaasD givne RIR2_SPISO : 123- 130: fishv LafFaasD givne RIR2_SPVKA : 63- 70: fikhi LafFassD givne RIR2_VACCC : 63- 70: fikhv LafFaasD givne RIR2_VACCP : 63- 70: fikhv LafFaasD givne RIR2_VACCV : 63- 70: fikhv LafFaasD givne RIR2_VARV : 63- 70: fikhv LafFaasD givne RIR2_VZVD : 79- 84: gsltq L--FsqkD ihhyy RIR2_VZVD : 108- 114: ysqiq LmlFrg-D eslrv RIR2_VZVD : 110- 114: qiqlm L--Frg-D eslrv RIR2_VZVD : 279- 285: dsdfp La-FmiaD kntnf RIR2_YEAST : 138- 145: fisrv LafFaasD givne RIR4_ECOLI : 9- 15: gqree LksFaf-D lllel RIR4_SALTY : 218- 224: ieree LklFal-D llmel RIR4_SALTY : 220- 224: reelk L--Fal-D llmel T 20: 10.5102 56( 28) L-x(2,4)-A-x(0,2)-L Occurences: 56(28) RIR2_ASFB7 : 233- 239: iihki Lke--AveL vdefi RIR2_ASFM2 : 226- 232: iihki Lke--AveL vdefi RIR2_BPT4 : 205- 211: slylc LhvinA--L eairf RIR2_CAEEL : 260- 267: srdeg LhrdfAc-L lyskl RIR2_CAEEL : 260- 268: srdeg LhrdfAclL ysklq RIR2_CAEEL : 296- 300: ieqef Lte--A--L pvdmi RIR2_DICDI : 210- 217: srdeg LhcdfAc-L lytkl RIR2_DICDI : 210- 218: srdeg LhcdfAclL ytklq RIR2_EBV : 57- 63: flftf Lam--AekL vnfni RIR2_EBV : 189- 197: isrde LlhtrAasL lynsm RIR2_EBV : 190- 197: srdel LhtraAs-L lynsm RIR2_EBV : 190- 197: srdel Lhtr-AasL lynsm RIR2_EBV : 190- 198: srdel LhtraAslL ynsmt RIR2_ECOLI : 197- 203: klylc LmsvnA--L eairf RIR2_HAEIN : 197- 203: qlylc LmsvnA--L eairf RIR2_HSV11 : 8- 12: saapa Lsp--A--L taltd RIR2_HSV11 : 90- 96: flfaf Lsa--AddL vtenl RIR2_HSV11 : 273- 278: tdshi Lspa-A--L aaien RIR2_HSV11 : 273- 278: tdshi Lsp--Aa-L aaien RIR2_HSV1K : 8- 12: saapa Lsp--A--L tahtg RIR2_HSV1K : 90- 96: flfaf Lsa--AddL vtenl RIR2_HSV1K : 273- 278: tdshi Lspa-A--L aaien RIR2_HSV1K : 273- 278: tdshi Lsp--Aa-L aaien RIR2_HSV23 : 87- 93: flfaf Lsa--AddL vtenl RIR2_HSV23 : 270- 275: tdssi Lspg-A--L aaien RIR2_HSVB3 : 54- 59: kdvar Lsg--Ae-L efyrf RIR2_HSVB3 : 69- 75: flfaf Lsa--AddL vnvnl RIR2_HSVB3 : 228- 235: ariye Lfre-AwkL saslf RIR2_HSVB3 : 266- 272: ysadr Lla--AiqL pplfg RIR2_HSVEB : 53- 59: pisdd Lkdv-Ak-L tpaer RIR2_HSVEB : 74- 80: flfaf Lsa--AddL vnlnl RIR2_HSVEB : 85- 91: lvnln LgdlsA--L ftqkd RIR2_HSVSA : 60- 66: flftf Lgm--AekL vnini RIR2_HSVSA : 193- 200: ardem LhtsaAa-L lyntm RIR2_HSVSA : 193- 200: ardem Lhts-AaaL lyntm RIR2_HSVSA : 193- 201: ardem LhtsaAalL yntmt RIR2_HUMAN : 268- 275: srdeg LhcdfAc-L mfkhl RIR2_HUMAN : 304- 308: ieqef Lte--A--L pvkli RIR2_MOUSE : 269- 276: srdeg LhcdfAc-L mfkhl RIR2_MOUSE : 305- 309: ieqef Lte--A--L pvkli RIR2_SALTY : 197- 203: klylc LmsvnA--L eairf RIR2_SCHPO : 265- 272: crdeg LhtdfAc-L mfshl RIR2_SCHPO : 328- 332: fvadr Llv--A--L gndky RIR2_SPISO : 260- 267: srdeg LhcdfAc-L mfshl RIR2_SPISO : 296- 300: ieqvf Lte--A--L pcrli RIR2_SPVKA : 199- 206: srdeg LhcdfAc-L mfkhl RIR2_VACCC : 199- 206: srdeg LhcdfAc-L mfkhl RIR2_VACCC : 235- 239: ieqef Lta--A--L pvkli RIR2_VACCP : 199- 206: srdeg LhcdfAc-L mfkhl RIR2_VACCP : 235- 239: ieqef Lta--A--L pvkli RIR2_VACCV : 199- 206: srdeg LhcdfAc-L mfkhl RIR2_VACCV : 235- 239: ieqef Lta--A--L pvkli RIR2_VARV : 199- 206: srdeg LhcdfAc-L mfkhl RIR2_VARV : 235- 239: ieqef Ltv--A--L pvkli RIR2_VZVD : 62- 68: fiftf Lsa--AddL vnvnl RIR2_YEAST : 275- 282: crdeg LhtdfAc-L lfahl RIR2_YEAST : 275- 283: crdeg LhtdfAclL fahlk RIR2_YEAST : 282- 287: tdfac Llf--Ah-L knkpd RIR2_YEAST : 315- 319: yflda Lpv--A--L lgmna RIR2_YEAST : 315- 320: yflda Lpv--Al-L gmnad RIR2_YEAST : 319- 326: alpva LlgmnAd-L mnqyv RIR2_YEAST : 320- 326: lpval Lgmn-Ad-L mnqyv RIR4_ECOLI : 9- 16: gqree Lksf-AfdL llely RIR4_SALTY : 178- 184: ssrgk Ltnt-Ad-L irlii RIR4_SALTY : 218- 223: ieree Lklf-A--L dllme RIR4_SALTY : 218- 225: ieree Lklf-AldL lmely RIR4_SALTY : 265- 270: kalmn Lgye-A--L fppem Number of patterns evaluated by Pratt:913 Total running time: 3 seconds