------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file RIBONUCLEASE_P PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBONUCLEASE_P.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RNPA_BACSU 116 RNPA_BUCAP 114 RNPA_COXBU 121 RNPA_ECOLI 119 RNPA_HAEIN 136 RNPA_MICLU 132 RNPA_MYCCA 109 RNPA_MYCLE 120 RNPA_PROMI 119 RNPA_PSEPU 133 RNPA_STRBI 123 Pratt run started at Thu Feb 6 21:05:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 11( 11) G-x(4,5)-K-x(4,5)-A-x(2)-R-x(4)-R 2: 16.1802 15( 11) K-x(4,5)-A-x(2)-R-x(4)-R 3: 15.6802 11( 11) A-x(2,3)-R-N-x(2,3)-R 4: 15.6802 17( 11) K-x(3,5)-A-x(2)-R-x(4)-R 5: 12.5102 11( 11) A-x(2)-R-x(4)-R 6: 12.0102 11( 11) R-N-x(2,3)-R 7: 12.0102 11( 11) R-x(4)-R-x(2,3)-R 8: 11.0102 15( 11) R-x(2,3)-R-x(1,3)-L 9: 11.0102 15( 11) N-x(2,3)-R-x(0,2)-R 10: 8.3401 20( 11) L-x(3)-L 11: 8.3401 23( 11) R-x(5)-L 12: 8.3401 20( 11) R-x(3)-K 13: 8.3401 36( 11) R-x(2)-R 14: 8.3401 25( 11) K-x(3)-R 15: 8.3401 17( 11) N-x(3)-R 16: 8.3401 14( 11) K-x(4)-A 17: 8.3401 16( 11) L-x(5)-V 18: 7.8401 18( 11) L-x(2,3)-E 19: 7.8401 40( 11) L-x(2,3)-L 20: 7.8401 30( 11) K-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.7603 11( 11) G-x(4,5)-K-x(4,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] B 2: 22.0902 15( 11) K-x(4,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] C 3: 21.5902 17( 11) K-x(3,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] D 4: 19.5288 11( 11) K-x(4)-A-x(3)-[DNV]-x-[ILV]-x-[HKR]-x(2)-[RS] E 5: 19.4545 11( 11) N-[KR]-[ILMV]-[KR]-R-x(2)-[DEKR] F 6: 18.4202 11( 11) A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] G 7: 15.7583 11( 11) A-x(2)-R-x(4)-R-x(2)-[KR] H 8: 15.6802 11( 11) A-x(2,3)-R-N-x(2,3)-R I 9: 14.6720 11( 11) R-x(2)-[ILV]-x-R-x(2,3)-R J 10: 12.0102 11( 11) R-N-x(2,3)-R K 11: 11.0102 15( 11) R-x(2,3)-R-x(1,3)-L L 12: 11.0102 15( 11) N-x(2,3)-R-x(0,2)-R M 13: 10.9541 13( 11) R-[DNV]-x(2)-K N 14: 8.3401 20( 11) L-x(3)-L O 15: 8.3401 23( 11) R-x(5)-L P 16: 8.3401 36( 11) R-x(2)-R Q 17: 8.3401 25( 11) K-x(3)-R R 18: 8.3401 16( 11) L-x(5)-V S 19: 7.8401 2( 2) A-x(2,3)-R T 20: 7.8401 18( 11) L-x(2,3)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 25.7603 11( 11) G-x(4,5)-K-x(4,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] Occurences: 11(11) RNPA_BACSU : 44- 65: delrv Glsvs-Kkign-AvmRnrIkRliR qafle RNPA_BUCAP : 48- 70: ghprl GlsisrKnikh-AyrRnkIkRliR etfrl RNPA_COXBU : 47- 69: khsrl Gvvas-KrnvrkAvwRnrVrRvvK eafri RNPA_ECOLI : 48- 70: ghpri GltvakKnvrr-AheRnrIkRltR esfrl RNPA_ECOLI : 48- 70: ghpri Gltva-KknvrrAheRnrIkRltR esfrl RNPA_HAEIN : 65- 87: ehprl GltvakKhlkr-AheRnrIkRlvR esfrl RNPA_HAEIN : 65- 87: ehprl Gltva-KkhlkrAheRnrIkRlvR esfrl RNPA_MICLU : 53- 74: prpra Gfvvs-Kavgn-AvtRnrVkRrlR avvae RNPA_MYCCA : 43- 64: sylky Gisvg-Kkign-AviRnkVkRqiR milkq RNPA_MYCLE : 48- 69: kaphv Gliia-Ktvgs-AveRhrVaRrlR hvart RNPA_PROMI : 48- 70: ghpri GltiakKnvkr-AheRnrIkRlaR eyfrl RNPA_PROMI : 48- 70: ghpri Gltia-KknvkrAheRnrIkRlaR eyfrl RNPA_PSEPU : 48- 70: dhprl GlvigkKsvkl-AvqRnrLkRlmR dsfrl RNPA_PSEPU : 48- 70: dhprl Glvig-KksvklAvqRnrLkRlmR dsfrl RNPA_STRBI : 53- 74: pptra Gfvvs-Kavgg-AvvRnqVkRrlR hlvcd B 2: 22.0902 15( 11) K-x(4,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] Occurences: 15(11) RNPA_BACSU : 49- 65: glsvs Kkign-AvmRnrIkRliR qafle RNPA_BUCAP : 54- 70: lsisr Knikh-AyrRnkIkRliR etfrl RNPA_COXBU : 52- 69: gvvas KrnvrkAvwRnrVrRvvK eafri RNPA_ECOLI : 53- 70: gltva KknvrrAheRnrIkRltR esfrl RNPA_ECOLI : 54- 70: ltvak Knvrr-AheRnrIkRltR esfrl RNPA_HAEIN : 70- 87: gltva KkhlkrAheRnrIkRlvR esfrl RNPA_HAEIN : 71- 87: ltvak Khlkr-AheRnrIkRlvR esfrl RNPA_MICLU : 58- 74: gfvvs Kavgn-AvtRnrVkRrlR avvae RNPA_MYCCA : 48- 64: gisvg Kkign-AviRnkVkRqiR milkq RNPA_MYCLE : 53- 69: gliia Ktvgs-AveRhrVaRrlR hvart RNPA_PROMI : 53- 70: gltia KknvkrAheRnrIkRlaR eyfrl RNPA_PROMI : 54- 70: ltiak Knvkr-AheRnrIkRlaR eyfrl RNPA_PSEPU : 53- 70: glvig KksvklAvqRnrLkRlmR dsfrl RNPA_PSEPU : 54- 70: lvigk Ksvkl-AvqRnrLkRlmR dsfrl RNPA_STRBI : 58- 74: gfvvs Kavgg-AvvRnqVkRrlR hlvcd C 3: 21.5902 17( 11) K-x(3,5)-A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] Occurences: 17(11) RNPA_BACSU : 49- 65: glsvs Kkign-AvmRnrIkRliR qafle RNPA_BACSU : 50- 65: lsvsk Kign--AvmRnrIkRliR qafle RNPA_BUCAP : 54- 70: lsisr Knikh-AyrRnkIkRliR etfrl RNPA_COXBU : 52- 69: gvvas KrnvrkAvwRnrVrRvvK eafri RNPA_ECOLI : 53- 70: gltva KknvrrAheRnrIkRltR esfrl RNPA_ECOLI : 54- 70: ltvak Knvrr-AheRnrIkRltR esfrl RNPA_HAEIN : 70- 87: gltva KkhlkrAheRnrIkRlvR esfrl RNPA_HAEIN : 71- 87: ltvak Khlkr-AheRnrIkRlvR esfrl RNPA_MICLU : 58- 74: gfvvs Kavgn-AvtRnrVkRrlR avvae RNPA_MYCCA : 48- 64: gisvg Kkign-AviRnkVkRqiR milkq RNPA_MYCCA : 49- 64: isvgk Kign--AviRnkVkRqiR milkq RNPA_MYCLE : 53- 69: gliia Ktvgs-AveRhrVaRrlR hvart RNPA_PROMI : 53- 70: gltia KknvkrAheRnrIkRlaR eyfrl RNPA_PROMI : 54- 70: ltiak Knvkr-AheRnrIkRlaR eyfrl RNPA_PSEPU : 53- 70: glvig KksvklAvqRnrLkRlmR dsfrl RNPA_PSEPU : 54- 70: lvigk Ksvkl-AvqRnrLkRlmR dsfrl RNPA_STRBI : 58- 74: gfvvs Kavgg-AvvRnqVkRrlR hlvcd D 4: 19.5288 11( 11) K-x(4)-A-x(3)-[DNV]-x-[ILV]-x-[HKR]-x(2)-[RS] Occurences: 11(11) RNPA_BACSU : 49- 65: glsvs KkignAvmrNrIkRliR qafle RNPA_BUCAP : 54- 70: lsisr KnikhAyrrNkIkRliR etfrl RNPA_COXBU : 76- 92: afrir KkdlpAfdiVvVaKasS veadn RNPA_ECOLI : 54- 70: ltvak KnvrrAherNrIkRltR esfrl RNPA_HAEIN : 71- 87: ltvak KhlkrAherNrIkRlvR esfrl RNPA_MICLU : 58- 74: gfvvs KavgnAvtrNrVkRrlR avvae RNPA_MYCCA : 48- 64: gisvg KkignAvirNkVkRqiR milkq RNPA_MYCLE : 19- 35: fdatv KfglrAvqsDvIiHvwR gcnrd RNPA_PROMI : 54- 70: ltiak KnvkrAherNrIkRlaR eyfrl RNPA_PSEPU : 54- 70: lvigk KsvklAvqrNrLkRlmR dsfrl RNPA_STRBI : 58- 74: gfvvs KavggAvvrNqVkRrlR hlvcd E 5: 19.4545 11( 11) N-[KR]-[ILMV]-[KR]-R-x(2)-[DEKR] Occurences: 11(11) RNPA_BACSU : 58- 65: navmr NRIKRliR qafle RNPA_BUCAP : 63- 70: hayrr NKIKRliR etfrl RNPA_COXBU : 62- 69: kavwr NRVRRvvK eafri RNPA_ECOLI : 63- 70: raher NRIKRltR esfrl RNPA_HAEIN : 80- 87: raher NRIKRlvR esfrl RNPA_MICLU : 67- 74: navtr NRVKRrlR avvae RNPA_MYCCA : 57- 64: navir NKVKRqiR milkq RNPA_MYCLE : 6- 13: mlsac NRMRRssE fdatv RNPA_PROMI : 63- 70: raher NRIKRlaR eyfrl RNPA_PSEPU : 63- 70: lavqr NRLKRlmR dsfrl RNPA_STRBI : 6- 13: mlpte NRLRRreD fatav F 6: 18.4202 11( 11) A-x(2)-R-x(2)-[ILV]-x-R-x(2)-[KR] Occurences: 11(11) RNPA_BACSU : 54- 65: kkign AvmRnrIkRliR qafle RNPA_BUCAP : 59- 70: knikh AyrRnkIkRliR etfrl RNPA_COXBU : 58- 69: rnvrk AvwRnrVrRvvK eafri RNPA_ECOLI : 59- 70: knvrr AheRnrIkRltR esfrl RNPA_HAEIN : 76- 87: khlkr AheRnrIkRlvR esfrl RNPA_MICLU : 63- 74: kavgn AvtRnrVkRrlR avvae RNPA_MYCCA : 53- 64: kkign AviRnkVkRqiR milkq RNPA_MYCLE : 58- 69: ktvgs AveRhrVaRrlR hvart RNPA_PROMI : 59- 70: knvkr AheRnrIkRlaR eyfrl RNPA_PSEPU : 59- 70: ksvkl AvqRnrLkRlmR dsfrl RNPA_STRBI : 63- 74: kavgg AvvRnqVkRrlR hlvcd G 7: 15.7583 11( 11) A-x(2)-R-x(4)-R-x(2)-[KR] Occurences: 11(11) RNPA_BACSU : 54- 65: kkign AvmRnrikRliR qafle RNPA_BUCAP : 59- 70: knikh AyrRnkikRliR etfrl RNPA_COXBU : 58- 69: rnvrk AvwRnrvrRvvK eafri RNPA_ECOLI : 59- 70: knvrr AheRnrikRltR esfrl RNPA_HAEIN : 76- 87: khlkr AheRnrikRlvR esfrl RNPA_MICLU : 63- 74: kavgn AvtRnrvkRrlR avvae RNPA_MYCCA : 53- 64: kkign AviRnkvkRqiR milkq RNPA_MYCLE : 58- 69: ktvgs AveRhrvaRrlR hvart RNPA_PROMI : 59- 70: knvkr AheRnrikRlaR eyfrl RNPA_PSEPU : 59- 70: ksvkl AvqRnrlkRlmR dsfrl RNPA_STRBI : 63- 74: kavgg AvvRnqvkRrlR hlvcd H 8: 15.6802 11( 11) A-x(2,3)-R-N-x(2,3)-R Occurences: 11(11) RNPA_BACSU : 54- 62: kkign Avm-RNrikR lirqa RNPA_BUCAP : 59- 67: knikh Ayr-RNkikR liret RNPA_COXBU : 58- 65: rnvrk Avw-RNrv-R rvvke RNPA_COXBU : 58- 66: rnvrk Avw-RNrvrR vvkea RNPA_ECOLI : 59- 67: knvrr Ahe-RNrikR ltres RNPA_HAEIN : 76- 84: khlkr Ahe-RNrikR lvres RNPA_MICLU : 63- 71: kavgn Avt-RNrvkR rlrav RNPA_MYCCA : 53- 61: kkign Avi-RNkvkR qirmi RNPA_MYCLE : 102- 110: ssawl AqqlRNgl-R caldl RNPA_PROMI : 59- 67: knvkr Ahe-RNrikR larey RNPA_PSEPU : 59- 67: ksvkl Avq-RNrlkR lmrds RNPA_STRBI : 63- 71: kavgg Avv-RNqvkR rlrhl I 9: 14.6720 11( 11) R-x(2)-[ILV]-x-R-x(2,3)-R Occurences: 11(11) RNPA_BACSU : 57- 65: gnavm RnrIkRli-R qafle RNPA_BUCAP : 62- 70: khayr RnkIkRli-R etfrl RNPA_COXBU : 56- 65: skrnv RkaVwRnrvR rvvke RNPA_ECOLI : 62- 70: rrahe RnrIkRlt-R esfrl RNPA_HAEIN : 79- 87: krahe RnrIkRlv-R esfrl RNPA_MICLU : 66- 74: gnavt RnrVkRrl-R avvae RNPA_MYCCA : 56- 64: gnavi RnkVkRqi-R milkq RNPA_MYCLE : 61- 69: gsave RhrVaRrl-R hvart RNPA_PROMI : 62- 70: krahe RnrIkRla-R eyfrl RNPA_PSEPU : 62- 70: klavq RnrLkRlm-R dsfrl RNPA_STRBI : 66- 74: ggavv RnqVkRrl-R hlvcd J 10: 12.0102 11( 11) R-N-x(2,3)-R Occurences: 11(11) RNPA_BACSU : 57- 62: gnavm RNrikR lirqa RNPA_BUCAP : 62- 67: khayr RNkikR liret RNPA_COXBU : 61- 65: rkavw RNrv-R rvvke RNPA_COXBU : 61- 66: rkavw RNrvrR vvkea RNPA_ECOLI : 62- 67: rrahe RNrikR ltres RNPA_HAEIN : 79- 84: krahe RNrikR lvres RNPA_MICLU : 66- 71: gnavt RNrvkR rlrav RNPA_MYCCA : 56- 61: gnavi RNkvkR qirmi RNPA_MYCLE : 106- 110: laqql RNgl-R caldl RNPA_PROMI : 62- 67: krahe RNrikR larey RNPA_PSEPU : 62- 67: klavq RNrlkR lmrds RNPA_STRBI : 66- 71: ggavv RNqvkR rlrhl K 11: 11.0102 15( 11) R-x(2,3)-R-x(1,3)-L Occurences: 15(11) RNPA_BACSU : 62- 69: rnrik Rli-RqafL eeker RNPA_BUCAP : 70- 76: ikrli RetfRl--L qhrli RNPA_COXBU : 26- 33: yaarq RiigRyy-L lyyre RNPA_COXBU : 26- 34: yaarq RiigRyylL yyren RNPA_ECOLI : 8- 13: klafp Rel-Rl--L tpsqf RNPA_HAEIN : 25- 30: klnfs Rel-Rl--L tpiqf RNPA_MICLU : 68- 73: avtrn Rvk-Rr--L ravva RNPA_MYCCA : 61- 67: rnkvk Rqi-Rmi-L kqnis RNPA_MYCLE : 63- 68: averh Rva-Rr--L rhvar RNPA_MYCLE : 69- 76: varrl RhvaRtm-L gelgg RNPA_MYCLE : 106- 113: laqql RnglRca-L dlaet RNPA_PROMI : 8- 13: klafp Rel-Rl--L tpkhf RNPA_PSEPU : 7- 12: sqdfs Rek-Rl--L tprhf RNPA_STRBI : 22- 28: avrrg RragRp--L lvvhl RNPA_STRBI : 22- 29: avrrg RragRpl-L vvhlr RNPA_STRBI : 23- 28: vrrgr Rag-Rp--L lvvhl RNPA_STRBI : 23- 29: vrrgr Rag-Rpl-L vvhlr RNPA_STRBI : 71- 76: rnqvk Rrl-Rh--L vcdrl L 12: 11.0102 15( 11) N-x(2,3)-R-x(0,2)-R Occurences: 15(11) RNPA_BACSU : 53- 59: skkig NavmRn-R ikrli RNPA_BACSU : 58- 65: navmr NrikRliR qafle RNPA_BUCAP : 63- 70: hayrr NkikRliR etfrl RNPA_COXBU : 62- 66: kavwr Nrv-R--R vvkea RNPA_ECOLI : 63- 70: raher NrikRltR esfrl RNPA_HAEIN : 22- 28: lvvkl Nfs-RelR lltpi RNPA_HAEIN : 80- 87: raher NrikRlvR esfrl RNPA_MICLU : 62- 68: skavg NavtRn-R vkrrl RNPA_MICLU : 67- 72: navtr NrvkR--R lravv RNPA_MICLU : 67- 74: navtr NrvkRrlR avvae RNPA_MYCCA : 57- 64: navir NkvkRqiR milkq RNPA_MYCLE : 6- 10: mlsac Nrm-R--R ssefd RNPA_PROMI : 63- 70: raher NrikRlaR eyfrl RNPA_PSEPU : 63- 70: lavqr NrlkRlmR dsfrl RNPA_STRBI : 6- 10: mlpte Nrl-R--R redfa RNPA_STRBI : 6- 11: mlpte NrlrR--R edfat RNPA_STRBI : 6- 11: mlpte Nrl-Rr-R edfat RNPA_STRBI : 67- 72: gavvr NqvkR--R lrhlv RNPA_STRBI : 67- 74: gavvr NqvkRrlR hlvcd M 13: 10.9541 13( 11) R-[DNV]-x(2)-K Occurences: 13(11) RNPA_BACSU : 4- 8: mkk RNrlK knedf RNPA_BACSU : 57- 61: gnavm RNriK rlirq RNPA_BUCAP : 62- 66: khayr RNkiK rlire RNPA_COXBU : 53- 57: vvask RNvrK avwrn RNPA_ECOLI : 62- 66: rrahe RNriK rltre RNPA_HAEIN : 79- 83: krahe RNriK rlvre RNPA_MICLU : 66- 70: gnavt RNrvK rrlra RNPA_MYCCA : 5- 9: mknk RVikK nfefq RNPA_MYCCA : 56- 60: gnavi RNkvK rqirm RNPA_MYCLE : 39- 43: wrgcn RDetK aphvg RNPA_PROMI : 62- 66: krahe RNriK rlare RNPA_PSEPU : 62- 66: klavq RNrlK rlmrd RNPA_STRBI : 66- 70: ggavv RNqvK rrlrh N 14: 8.3401 20( 11) L-x(3)-L Occurences: 20(11) RNPA_BACSU : 41- 45: pende LrvgL svskk RNPA_BUCAP : 76- 80: etfrl LqhrL ismdf RNPA_COXBU : 107- 111: ecink LftqL ekqsk RNPA_ECOLI : 101- 105: ldnra LseaL eklwr RNPA_HAEIN : 17- 21: hnsqf LvvkL nfsre RNPA_MICLU : 117- 121: etvga LgkaL kphlp RNPA_MICLU : 121- 125: algka LkphL paase RNPA_MYCCA : 97- 101: lkyat LsklL iklik RNPA_MYCCA : 100- 104: atlsk LlikL ikeik RNPA_MYCLE : 101- 105: vssaw LaqqL rnglr RNPA_MYCLE : 105- 109: wlaqq LrngL rcald RNPA_MYCLE : 109- 113: qlrng LrcaL dlaet RNPA_PROMI : 101- 105: ldnhq LtevL gklwr RNPA_PSEPU : 75- 79: rdsfr LnqqL lagld RNPA_PSEPU : 79- 83: rlnqq LlagL diviv RNPA_PSEPU : 108- 112: qhfgk LwkrL arsrp RNPA_STRBI : 29- 33: agrpl LvvhL rsgat RNPA_STRBI : 106- 110: adhaq LardL daalq RNPA_STRBI : 110- 114: qlard LdaaL qrllg RNPA_STRBI : 114- 118: dldaa LqrlL gggtr O 15: 8.3401 23( 11) R-x(5)-L Occurences: 23(11) RNPA_BACSU : 57- 63: gnavm RnrikrL irqaf RNPA_BACSU : 85- 91: yiiia RkpasqL tyeet RNPA_BUCAP : 62- 68: khayr RnkikrL iretf RNPA_BUCAP : 70- 76: ikrli RetfrlL qhrli RNPA_BUCAP : 74- 80: iretf RllqhrL ismdf RNPA_COXBU : 73- 79: vkeaf RirkkdL pafdi RNPA_ECOLI : 62- 68: rrahe RnrikrL tresf RNPA_ECOLI : 74- 80: tresf RlrqheL pamdf RNPA_ECOLI : 99- 105: adldn RalseaL eklwr RNPA_HAEIN : 79- 85: krahe RnrikrL vresf RNPA_HAEIN : 91- 97: vresf RlsqhrL paydf RNPA_MICLU : 111- 117: yallr RetvgaL gkalk RNPA_MYCCA : 61- 67: rnkvk RqirmiL kqnis RNPA_MYCCA : 86- 92: iiilv RksvleL kyatl RNPA_MYCLE : 73- 79: lrhva RtmlgeL ggadq RNPA_PROMI : 62- 68: krahe RnrikrL areyf RNPA_PROMI : 74- 80: areyf RlhqhqL pamdf RNPA_PROMI : 90- 96: fvvlv RkgvaeL dnhql RNPA_PSEPU : 62- 68: klavq RnrlkrL mrdsf RNPA_PSEPU : 74- 80: mrdsf RlnqqlL agldi RNPA_STRBI : 22- 28: avrrg RragrpL lvvhl RNPA_STRBI : 23- 29: vrrgr RagrplL vvhlr RNPA_STRBI : 108- 114: haqla RdldaaL qrllg P 16: 8.3401 36( 11) R-x(2)-R Occurences: 36(11) RNPA_BACSU : 59- 62: avmrn RikR lirqa RNPA_BACSU : 62- 65: rnrik RliR qafle RNPA_BUCAP : 67- 70: rnkik RliR etfrl RNPA_COXBU : 53- 56: vvask RnvR kavwr RNPA_COXBU : 63- 66: avwrn RvrR vvkea RNPA_ECOLI : 8- 11: klafp RelR lltps RNPA_ECOLI : 64- 67: ahern RikR ltres RNPA_ECOLI : 67- 70: rnrik RltR esfrl RNPA_ECOLI : 111- 114: eklwr RhcR largs RNPA_ECOLI : 114- 117: wrrhc RlaR gs RNPA_HAEIN : 25- 28: klnfs RelR lltpi RNPA_HAEIN : 81- 84: ahern RikR lvres RNPA_HAEIN : 84- 87: rnrik RlvR esfrl RNPA_HAEIN : 128- 131: eklwq RhiR laqks RNPA_MICLU : 4- 7: mlp RdrR vrtpa RNPA_MICLU : 6- 9: mlprd RrvR tpaef RNPA_MICLU : 23- 26: grtgt RagR rtvvv RNPA_MICLU : 68- 71: avtrn RvkR rlrav RNPA_MICLU : 71- 74: rnrvk RrlR avvae RNPA_MYCCA : 61- 64: rnkvk RqiR milkq RNPA_MYCLE : 7- 10: lsacn RmrR ssefd RNPA_MYCLE : 63- 66: averh RvaR rlrhv RNPA_MYCLE : 66- 69: rhrva RrlR hvart RNPA_PROMI : 8- 11: klafp RelR lltpk RNPA_PROMI : 64- 67: ahern RikR larey RNPA_PROMI : 67- 70: rnrik RlaR eyfrl RNPA_PROMI : 111- 114: gklwr RhcR laqks RNPA_PSEPU : 7- 10: sqdfs RekR lltpr RNPA_PSEPU : 64- 67: avqrn RlkR lmrds RNPA_PSEPU : 67- 70: rnrlk RlmR dsfrl RNPA_PSEPU : 111- 114: gklwk RlaR srptp RNPA_STRBI : 7- 10: lpten RlrR redfa RNPA_STRBI : 19- 22: fatav RrgR ragrp RNPA_STRBI : 20- 23: atavr RgrR agrpl RNPA_STRBI : 23- 26: vrrgr RagR pllvv RNPA_STRBI : 71- 74: rnqvk RrlR hlvcd Q 17: 8.3401 25( 11) K-x(3)-R Occurences: 25(11) RNPA_BACSU : 2- 6: m KkrnR lkkne RNPA_BACSU : 61- 65: mrnri KrliR qafle RNPA_BUCAP : 57- 61: srkni KhayR rnkik RNPA_BUCAP : 66- 70: rrnki KrliR etfrl RNPA_COXBU : 52- 56: gvvas KrnvR kavwr RNPA_COXBU : 57- 61: krnvr KavwR nrvrr RNPA_COXBU : 69- 73: vrrvv KeafR irkkd RNPA_COXBU : 113- 117: ftqle KqskR sssv RNPA_ECOLI : 53- 57: gltva KknvR raher RNPA_ECOLI : 54- 58: ltvak KnvrR ahern RNPA_ECOLI : 66- 70: ernri KrltR esfrl RNPA_ECOLI : 107- 111: seale KlwrR hcrla RNPA_HAEIN : 71- 75: ltvak KhlkR ahern RNPA_HAEIN : 83- 87: ernri KrlvR esfrl RNPA_HAEIN : 124- 128: aqile KlwqR hirla RNPA_MICLU : 70- 74: trnrv KrrlR avvae RNPA_MYCCA : 60- 64: irnkv KrqiR milkq RNPA_MYCLE : 19- 23: fdatv KfglR avqsd RNPA_PROMI : 54- 58: ltiak KnvkR ahern RNPA_PROMI : 66- 70: ernri KrlaR eyfrl RNPA_PROMI : 107- 111: tevlg KlwrR hcrla RNPA_PSEPU : 66- 70: qrnrl KrlmR dsfrl RNPA_PSEPU : 107- 111: hqhfg KlwkR larsr RNPA_PSEPU : 110- 114: fgklw KrlaR srptp RNPA_STRBI : 70- 74: vrnqv KrrlR hlvcd R 18: 8.3401 16( 11) L-x(5)-V Occurences: 16(11) RNPA_BACSU : 41- 47: pende LrvglsV skkig RNPA_BUCAP : 80- 86: llqhr LismdfV viakk RNPA_BUCAP : 96- 102: knivy LnnkkiV niley RNPA_COXBU : 79- 85: irkkd LpafdiV vvaka RNPA_ECOLI : 80- 86: lrqhe LpamdfV vvakk RNPA_HAEIN : 97- 103: lsqhr LpaydfV fvakn RNPA_MICLU : 2- 8: m LprdrrV rtpae RNPA_MICLU : 89- 95: pplrd LpvlvqV ralpa RNPA_MICLU : 108- 114: eadya LlrretV galgk RNPA_MYCCA : 40- 46: neesy LkygisV gkkig RNPA_MYCLE : 49- 55: aphvg LiiaktV gsave RNPA_MYCLE : 79- 85: tmlge LggadqV viral RNPA_MYCLE : 90- 96: vvira LpssrnV ssawl RNPA_PROMI : 80- 86: lhqhq LpamdfV vlvrk RNPA_PSEPU : 80- 86: lnqql LagldiV ivark RNPA_STRBI : 84- 90: drlsa LppgslV vvral S 19: 7.8401 2( 2) A-x(2,3)-R Occurences: 2(2) RNPA_COXBU : 58- 61: rnvrk Avw-R nrvrr RNPA_MYCLE : 102- 106: ssawl AqqlR nglrc T 20: 7.8401 18( 11) L-x(2,3)-E Occurences: 18(11) RNPA_BACSU : 7- 11: kkrnr LkknE dfqkv RNPA_BACSU : 33- 37: fvlyt LdqpE ndelr RNPA_BACSU : 69- 73: irqaf LeekE rlkek RNPA_BACSU : 91- 94: kpasq Lty-E etkks RNPA_BACSU : 91- 95: kpasq LtyeE tkksl RNPA_BUCAP : 68- 71: nkikr Lir-E tfrll RNPA_COXBU : 34- 38: gryyl LyyrE neikh RNPA_ECOLI : 68- 71: nrikr Ltr-E sfrlr RNPA_ECOLI : 75- 79: resfr LrqhE lpamd RNPA_HAEIN : 85- 88: nrikr Lvr-E sfrls RNPA_MICLU : 108- 112: eadya LlrrE tvgal RNPA_MICLU : 109- 112: adyal Lrr-E tvgal RNPA_MYCCA : 104- 107: kllik Lik-E ik RNPA_MYCLE : 113- 117: glrca LdlaE tdw RNPA_PROMI : 68- 71: nrikr Lar-E yfrlh RNPA_PSEPU : 36- 39: knlli Lar-E ngldh RNPA_PSEPU : 93- 97: varkg LgeiE npelh RNPA_STRBI : 2- 5: m Lpt-E nrlrr RNPA_STRBI : 8- 12: ptenr LrrrE dfata Number of patterns evaluated by Pratt:146 Total running time: 0 seconds