------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file RHODANESE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RHODANESE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: THTR_BOVIN 296 THTR_CHICK 289 THTR_CRIGR 296 THTR_ECOLI 280 THTR_HUMAN 296 THTR_MYCLE 296 THTR_RAT 295 THTR_SACER 281 THTR_SYNP7 320 Pratt run started at Thu Feb 6 21:05:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 9( 9) L-x(2,3)-L-x(4,5)-V-x(2)-Y-x-G-x-W-x-E 2: 24.5203 12( 9) L-x(4,5)-V-x(2)-Y-x-G-x-W-x-E 3: 18.8503 10( 9) G-x(3,5)-V-x(0,2)-L-x-G-G 4: 16.6802 9( 9) Y-x-G-x-W-x-E 5: 16.6802 9( 9) V-x(4)-G-x-W-x-E 6: 16.6802 12( 9) H-x-P-G-A 7: 16.6802 10( 9) G-H-I-x-G 8: 16.1802 13( 9) V-x(2)-Y-x(0,1)-D-G 9: 15.6802 10( 9) R-x(0,2)-H-x-P-x-A 10: 15.6802 9( 9) G-x(3)-V-x(2)-L-x(2,4)-G 11: 15.6802 11( 9) L-x(1,3)-G-x(3)-V-x(4)-G 12: 15.1802 11( 9) L-x(1,2)-G-x(1,3)-V-x(4)-G 13: 15.1802 10( 9) L-x(1,3)-L-x(4,5)-V-x(4)-G 14: 15.1802 14( 9) V-x(0,2)-L-x(0,1)-G-G 15: 15.1802 11( 9) L-x(1,3)-G-x(3)-V-x(3,4)-G 16: 15.1802 11( 9) L-x(1,3)-G-x(2,3)-V-x(4)-G 17: 14.6802 10( 9) A-x(3,5)-L-x(0,2)-A-x-L 18: 14.6802 13( 9) L-x(1,3)-G-x(1,3)-V-x(4)-G 19: 12.5102 9( 9) G-x-W-x-E 20: 12.5102 14( 9) P-G-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 44.8234 9( 9) G-x(3,5)-V-x(0,2)-L-[DGN]-G-G-x(3)-[WY]-x(2)-[ADEQ]-x(4)-[EST]-x-[AEG]-x(2)-[ENQR]-x(3)-[AGT]-x-[FY]-x-[APV]-x(4)-[ADEST] B 2: 43.1524 9( 9) L-x(2,3)-L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] C 3: 42.6524 9( 9) L-x(1,3)-L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] D 4: 39.4823 12( 9) L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] E 5: 38.4776 13( 9) V-x(0,2)-L-x(0,1)-G-G-x(3)-[WY]-x(2)-[ADEQ]-x(4)-[EST]-x-[AEG]-x(2)-[ENQR]-x(3)-[AGT]-x-[FY]-x-[APV]-x(4)-[ADEST] F 6: 35.8123 9( 9) V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] G 7: 34.6538 10( 9) R-x(0,2)-H-[IV]-P-[GST]-A-x(2)-[FIV]-[DNP]-x-[DEPST]-x(3)-[DENR]-x-[ADGNST]-[EGNS] H 8: 32.7104 9( 9) G-H-I-x-G-[AST]-x(2)-[ILMV]-[DP]-[FW]-x-[DENT]-x(3)-[ADEQ] I 9: 31.6422 9( 9) Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] J 10: 27.3090 9( 9) H-[IV]-P-G-A-x(2)-[FILMV]-[DP]-x(2)-[ENQT] K 11: 24.3016 9( 9) G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] L 12: 21.0178 9( 9) L-x(1,3)-G-x(3)-V-x-[ILV]-x-[DGN]-G M 13: 20.5178 9( 9) L-x(1,3)-G-x(2,3)-V-x-[ILV]-x-[DGN]-G N 14: 20.4323 9( 9) L-x(1,2)-G-x(1,3)-V-x-[ILV]-x-[DEN]-G O 15: 20.2844 9( 9) L-x(1,3)-G-x-[EPQST]-x-V-x(3,4)-G-x(3)-[EG] P 16: 20.0178 9( 9) L-x(1,3)-G-x(1,3)-V-x-[ILV]-x-[DGN]-G Q 17: 19.9141 9( 9) P-G-A-x(2)-[FILMV]-[DP]-x(2)-[ENQT] R 18: 18.4167 13( 9) V-x(2)-Y-x(0,1)-D-G-[ADNS] S 19: 17.3014 10( 9) A-x(3,5)-L-x(0,2)-A-x-L-x(3)-[NPS] T 20: 15.6802 9( 9) G-x(3)-V-x(2)-L-x(2,4)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 44.8234 9( 9) G-x(3,5)-V-x(0,2)-L-[DGN]-G-G-x(3)-[WY]-x(2)-[ADEQ]-x(4)-[EST]-x-[AEG]-x(2)-[ENQR]-x(3)-[AGT]-x-[FY]-x-[APV]-x(4)-[ADEST] Occurences: 9(9) THTR_BOVIN : 119- 159: mfrvf GhrtvsV--LNGGfrnWlkEghpvTsEpsRpepAiFkAtlnrS llkty THTR_BOVIN : 119- 159: mfrvf Ghrt--VsvLNGGfrnWlkEghpvTsEpsRpepAiFkAtlnrS llkty THTR_CHICK : 119- 159: mfraf GhrevsV--LNGGfknWvkEghpvTaEpsQpaeAvFkAkldkT llktf THTR_CHICK : 119- 159: mfraf Ghre--VsvLNGGfknWvkEghpvTaEpsQpaeAvFkAkldkT llktf THTR_CRIGR : 119- 159: mfrvf GhrtvsV--LNGGfrnWlkEghpvTsEpsRpepAvFkAtldrS llkty THTR_CRIGR : 119- 159: mfrvf Ghrt--VsvLNGGfrnWlkEghpvTsEpsRpepAvFkAtldrS llkty THTR_ECOLI : 111- 151: mlrtf Gvek--VsiLGGGlagWqrDdlllEeGavElpeGeFnAafnpE avvkv THTR_HUMAN : 120- 160: mfraf Ghha--VslLDGGlrhWlrQnlplSsGksQpapAeFrAqldpA fikty THTR_MYCLE : 115- 155: vftlf Ghpd--VrlLNGGrdlWlaErrdtSlAvpNktsTsYpVvnrnD apira THTR_RAT : 118- 158: mfrvf GhrtvsV--LNGGfrnWlkEghpvTsEpsRpepAvFkAtlnrS llkty THTR_RAT : 118- 158: mfrvf Ghrt--VsvLNGGfrnWlkEghpvTsEpsRpepAvFkAtlnrS llkty THTR_SACER : 102- 142: yfkly Ghsd--VklLDGGrkkWelDgrelTkEepNraaTaYkAqepdA siraf THTR_SYNP7 : 143- 183: llers GvqniaV--LDGGykgYkdAglpvTkEypRyqaArFaPkdnrA frvdi B 2: 43.1524 9( 9) L-x(2,3)-L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 9(9) THTR_BOVIN : 258- 284: achia LaayLcgkpdVaiYDGSWfEWfhrApP etwvs THTR_CHICK : 255- 281: achia LaayLcgkpdVavYDGSWsEWfhrApP qykvt THTR_CRIGR : 258- 284: achia LaayLcgkpdVavYDGSWsEWfhqApP etrvs THTR_ECOLI : 250- 274: vvlla Lat-Ldvpn-VklYDGAWsEWgarAdL pvepv THTR_HUMAN : 258- 284: achva LgayLcgkpdVpiYDGSWvEWymrArP edvis THTR_MYCLE : 258- 283: htwfv LthlLgkpg-VrnYDGSWtEWgntVrV pitag THTR_MYCLE : 258- 283: htwfv Lth-LlgkpgVrnYDGSWtEWgntVrV pitag THTR_RAT : 257- 283: achia LaayLcgkpdVavYDGSWsEWfrrApP etrvs THTR_SACER : 246- 271: htwfv LrelLghtn-VknYDGSWtEYgslVgV pienp THTR_SACER : 246- 271: htwfv Lre-LlghtnVknYDGSWtEYgslVgV pienp THTR_SYNP7 : 287- 312: lqylv LkhlLkypk-VriYEGSWtEYsasNlP vetgp THTR_SYNP7 : 287- 312: lqylv Lkh-LlkypkVriYEGSWtEYsasNlP vetgp C 3: 42.6524 9( 9) L-x(1,3)-L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 9(9) THTR_BOVIN : 258- 284: achia LaayLcgkpdVaiYDGSWfEWfhrApP etwvs THTR_CHICK : 255- 281: achia LaayLcgkpdVavYDGSWsEWfhrApP qykvt THTR_CRIGR : 258- 284: achia LaayLcgkpdVavYDGSWsEWfhqApP etrvs THTR_ECOLI : 250- 274: vvlla Lat-Ldvpn-VklYDGAWsEWgarAdL pvepv THTR_HUMAN : 258- 284: achva LgayLcgkpdVpiYDGSWvEWymrArP edvis THTR_MYCLE : 258- 283: htwfv LthlLgkpg-VrnYDGSWtEWgntVrV pitag THTR_MYCLE : 258- 283: htwfv Lth-LlgkpgVrnYDGSWtEWgntVrV pitag THTR_RAT : 257- 283: achia LaayLcgkpdVavYDGSWsEWfrrApP etrvs THTR_SACER : 246- 271: htwfv LrelLghtn-VknYDGSWtEYgslVgV pienp THTR_SACER : 246- 271: htwfv Lre-LlghtnVknYDGSWtEYgslVgV pienp THTR_SYNP7 : 287- 312: lqylv LkhlLkypk-VriYEGSWtEYsasNlP vetgp THTR_SYNP7 : 287- 312: lqylv Lkh-LlkypkVriYEGSWtEYsasNlP vetgp D 4: 39.4823 12( 9) L-x(4,5)-V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 12(9) THTR_BOVIN : 262- 284: alaay LcgkpdVaiYDGSWfEWfhrApP etwvs THTR_CHICK : 259- 281: alaay LcgkpdVavYDGSWsEWfhrApP qykvt THTR_CRIGR : 262- 284: alaay LcgkpdVavYDGSWsEWfhqApP etrvs THTR_ECOLI : 253- 274: lalat Ldvpn-VklYDGAWsEWgarAdL pvepv THTR_HUMAN : 262- 284: algay LcgkpdVpiYDGSWvEWymrArP edvis THTR_MYCLE : 261- 283: fvlth LlgkpgVrnYDGSWtEWgntVrV pitag THTR_MYCLE : 262- 283: vlthl Lgkpg-VrnYDGSWtEWgntVrV pitag THTR_RAT : 261- 283: alaay LcgkpdVavYDGSWsEWfrrApP etrvs THTR_SACER : 249- 271: fvlre LlghtnVknYDGSWtEYgslVgV pienp THTR_SACER : 250- 271: vlrel Lghtn-VknYDGSWtEYgslVgV pienp THTR_SYNP7 : 290- 312: lvlkh LlkypkVriYEGSWtEYsasNlP vetgp THTR_SYNP7 : 291- 312: vlkhl Lkypk-VriYEGSWtEYsasNlP vetgp E 5: 38.4776 13( 9) V-x(0,2)-L-x(0,1)-G-G-x(3)-[WY]-x(2)-[ADEQ]-x(4)-[EST]-x-[AEG]-x(2)-[ENQR]-x(3)-[AGT]-x-[FY]-x-[APV]-x(4)-[ADEST] Occurences: 13(9) THTR_BOVIN : 123- 159: fghrt VsvLnGGfrnWlkEghpvTsEpsRpepAiFkAtlnrS llkty THTR_BOVIN : 125- 159: hrtvs V--LnGGfrnWlkEghpvTsEpsRpepAiFkAtlnrS llkty THTR_CHICK : 123- 159: fghre VsvLnGGfknWvkEghpvTaEpsQpaeAvFkAkldkT llktf THTR_CHICK : 125- 159: hrevs V--LnGGfknWvkEghpvTaEpsQpaeAvFkAkldkT llktf THTR_CRIGR : 123- 159: fghrt VsvLnGGfrnWlkEghpvTsEpsRpepAvFkAtldrS llkty THTR_CRIGR : 125- 159: hrtvs V--LnGGfrnWlkEghpvTsEpsRpepAvFkAtldrS llkty THTR_ECOLI : 115- 151: fgvek VsiLgGGlagWqrDdlllEeGavElpeGeFnAafnpE avvkv THTR_HUMAN : 124- 160: fghha VslLdGGlrhWlrQnlplSsGksQpapAeFrAqldpA fikty THTR_MYCLE : 119- 155: fghpd VrlLnGGrdlWlaErrdtSlAvpNktsTsYpVvnrnD apira THTR_RAT : 122- 158: fghrt VsvLnGGfrnWlkEghpvTsEpsRpepAvFkAtlnrS llkty THTR_RAT : 124- 158: hrtvs V--LnGGfrnWlkEghpvTsEpsRpepAvFkAtlnrS llkty THTR_SACER : 106- 142: yghsd VklLdGGrkkWelDgrelTkEepNraaTaYkAqepdA siraf THTR_SYNP7 : 149- 183: vqnia V--LdGGykgYkdAglpvTkEypRyqaArFaPkdnrA frvdi F 6: 35.8123 9( 9) V-x(2)-Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 9(9) THTR_BOVIN : 268- 284: cgkpd VaiYDGSWfEWfhrApP etwvs THTR_CHICK : 265- 281: cgkpd VavYDGSWsEWfhrApP qykvt THTR_CRIGR : 268- 284: cgkpd VavYDGSWsEWfhqApP etrvs THTR_ECOLI : 258- 274: ldvpn VklYDGAWsEWgarAdL pvepv THTR_HUMAN : 268- 284: cgkpd VpiYDGSWvEWymrArP edvis THTR_MYCLE : 267- 283: lgkpg VrnYDGSWtEWgntVrV pitag THTR_RAT : 267- 283: cgkpd VavYDGSWsEWfrrApP etrvs THTR_SACER : 255- 271: lghtn VknYDGSWtEYgslVgV pienp THTR_SYNP7 : 296- 312: lkypk VriYEGSWtEYsasNlP vetgp G 7: 34.6538 10( 9) R-x(0,2)-H-[IV]-P-[GST]-A-x(2)-[FIV]-[DNP]-x-[DEPST]-x(3)-[DENR]-x-[ADGNST]-[EGNS] Occurences: 10(9) THTR_BOVIN : 50- 68: keyle R--HVPGAsfFDiEecrDkAS pyevm THTR_CHICK : 50- 68: qefke R--HIPGAsfFNiEecrDkSS pydfm THTR_CRIGR : 50- 68: keyqe R--HVPGAsfFDiEecrDtTS pyemm THTR_ECOLI : 191- 211: prpgl RrgHIPGAlnVPwTelvReGE lkttd THTR_ECOLI : 192- 211: rpglr Rg-HIPGAlnVPwTelvReGE lkttd THTR_HUMAN : 51- 69: tqfee R--HIPGAafFDiDqcsDrTS pydhm THTR_MYCLE : 200- 220: eesvl RagHIPTArsIPwEmtvDkSG rfrss THTR_RAT : 49- 67: keyqe R--HVPGAsfFDiEecrDtTS pyemm THTR_SACER : 186- 206: qesaq RagHIPSAinVPwSkaaNeDG tfksd THTR_SYNP7 : 218- 238: qqvfi RngHIPGArnIPwPtftEaNN anesl H 8: 32.7104 9( 9) G-H-I-x-G-[AST]-x(2)-[ILMV]-[DP]-[FW]-x-[DENT]-x(3)-[ADEQ] Occurences: 9(9) THTR_BOVIN : 202- 218: vglds GHIrGSvnMPFmNfltE dgfek THTR_CHICK : 199- 215: qgles GHIpGAvnMPFsTfltE sghek THTR_CRIGR : 202- 218: vglds GHIrGSanMPFmNfltE dgfek THTR_ECOLI : 193- 209: pglrr GHIpGAlnVPWtElvrE gelkt THTR_HUMAN : 202- 218: dgiep GHIpGTvnIPFtDflsQ eglek THTR_MYCLE : 50- 66: llydv GHIpGAvkVDWhTdlnD pkvrd THTR_RAT : 201- 217: vglds GHIrGSvnVPFmNfltE dgfek THTR_SACER : 37- 53: taydg GHIpGAikLDWkNelqD hvrrd THTR_SYNP7 : 220- 236: vfirn GHIpGArnIPWpTfteA nnane I 9: 31.6422 9( 9) Y-[DE]-G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 9(9) THTR_BOVIN : 271- 284: pdvai YDGSWfEWfhrApP etwvs THTR_CHICK : 268- 281: pdvav YDGSWsEWfhrApP qykvt THTR_CRIGR : 271- 284: pdvav YDGSWsEWfhqApP etrvs THTR_ECOLI : 261- 274: pnvkl YDGAWsEWgarAdL pvepv THTR_HUMAN : 271- 284: pdvpi YDGSWvEWymrArP edvis THTR_MYCLE : 270- 283: pgvrn YDGSWtEWgntVrV pitag THTR_RAT : 270- 283: pdvav YDGSWsEWfrrApP etrvs THTR_SACER : 258- 271: tnvkn YDGSWtEYgslVgV pienp THTR_SYNP7 : 299- 312: pkvri YEGSWtEYsasNlP vetgp J 10: 27.3090 9( 9) H-[IV]-P-G-A-x(2)-[FILMV]-[DP]-x(2)-[ENQT] Occurences: 9(9) THTR_BOVIN : 51- 62: eyler HVPGAsfFDieE crdka THTR_CHICK : 200- 211: glesg HIPGAvnMPfsT fltes THTR_CRIGR : 51- 62: eyqer HVPGAsfFDieE crdtt THTR_ECOLI : 194- 205: glrrg HIPGAlnVPwtE lvreg THTR_HUMAN : 52- 63: qfeer HIPGAafFDidQ csdrt THTR_MYCLE : 51- 62: lydvg HIPGAvkVDwhT dlndp THTR_RAT : 50- 61: eyqer HVPGAsfFDieE crdtt THTR_SACER : 38- 49: aydgg HIPGAikLDwkN elqdh THTR_SYNP7 : 221- 232: firng HIPGArnIPwpT ftean K 11: 24.3016 9( 9) G-[AS]-W-x-E-[WY]-x(3)-[ANV]-x-[LPV] Occurences: 9(9) THTR_BOVIN : 273- 284: vaiyd GSWfEWfhrApP etwvs THTR_CHICK : 270- 281: vavyd GSWsEWfhrApP qykvt THTR_CRIGR : 273- 284: vavyd GSWsEWfhqApP etrvs THTR_ECOLI : 263- 274: vklyd GAWsEWgarAdL pvepv THTR_HUMAN : 273- 284: vpiyd GSWvEWymrArP edvis THTR_MYCLE : 272- 283: vrnyd GSWtEWgntVrV pitag THTR_RAT : 272- 283: vavyd GSWsEWfrrApP etrvs THTR_SACER : 260- 271: vknyd GSWtEYgslVgV pienp THTR_SYNP7 : 301- 312: vriye GSWtEYsasNlP vetgp L 12: 21.0178 9( 9) L-x(1,3)-G-x(3)-V-x-[ILV]-x-[DGN]-G Occurences: 9(9) THTR_BOVIN : 262- 273: alaay Lc--GkpdVaIyDG swfew THTR_CHICK : 259- 270: alaay Lc--GkpdVaVyDG swsew THTR_CRIGR : 262- 273: alaay Lc--GkpdVaVyDG swsew THTR_ECOLI : 107- 120: rawwm LrtfGvekVsIlGG glagw THTR_HUMAN : 262- 273: algay Lc--GkpdVpIyDG swvew THTR_MYCLE : 113- 124: lwvft Lf--GhpdVrLlNG grdlw THTR_RAT : 261- 272: alaay Lc--GkpdVaVyDG swsew THTR_SACER : 100- 111: ywyfk Ly--GhsdVkLlDG grkkw THTR_SYNP7 : 208- 220: prppa Lfs-GeqqVfIrNG hipga M 13: 20.5178 9( 9) L-x(1,3)-G-x(2,3)-V-x-[ILV]-x-[DGN]-G Occurences: 9(9) THTR_BOVIN : 262- 273: alaay Lc--GkpdVaIyDG swfew THTR_CHICK : 259- 270: alaay Lc--GkpdVaVyDG swsew THTR_CRIGR : 262- 273: alaay Lc--GkpdVaVyDG swsew THTR_ECOLI : 107- 120: rawwm LrtfGvekVsIlGG glagw THTR_HUMAN : 262- 273: algay Lc--GkpdVpIyDG swvew THTR_MYCLE : 113- 124: lwvft Lf--GhpdVrLlNG grdlw THTR_RAT : 261- 272: alaay Lc--GkpdVaVyDG swsew THTR_SACER : 100- 111: ywyfk Ly--GhsdVkLlDG grkkw THTR_SYNP7 : 208- 220: prppa Lfs-GeqqVfIrNG hipga N 14: 20.4323 9( 9) L-x(1,2)-G-x(1,3)-V-x-[ILV]-x-[DEN]-G Occurences: 9(9) THTR_BOVIN : 262- 273: alaay Lc-GkpdVaIyDG swfew THTR_CHICK : 259- 270: alaay Lc-GkpdVaVyDG swsew THTR_CRIGR : 262- 273: alaay Lc-GkpdVaVyDG swsew THTR_ECOLI : 132- 142: rddll LeeGa--VeLpEG efnaa THTR_HUMAN : 262- 273: algay Lc-GkpdVpIyDG swvew THTR_MYCLE : 113- 124: lwvft Lf-GhpdVrLlNG grdlw THTR_RAT : 261- 272: alaay Lc-GkpdVaVyDG swsew THTR_SACER : 100- 111: ywyfk Ly-GhsdVkLlDG grkkw THTR_SYNP7 : 208- 220: prppa LfsGeqqVfIrNG hipga O 15: 20.2844 9( 9) L-x(1,3)-G-x-[EPQST]-x-V-x(3,4)-G-x(3)-[EG] Occurences: 9(9) THTR_BOVIN : 262- 277: alaay Lc--GkPdVaiydGswfE wfhra THTR_CHICK : 259- 274: alaay Lc--GkPdVavydGswsE wfhra THTR_CRIGR : 262- 277: alaay Lc--GkPdVavydGswsE wfhqa THTR_ECOLI : 107- 124: rawwm LrtfGvEkVsilgGglaG wqrdd THTR_HUMAN : 262- 277: algay Lc--GkPdVpiydGswvE wymra THTR_MYCLE : 261- 276: fvlth Ll--GkPgVrnydGswtE wgntv THTR_RAT : 261- 276: alaay Lc--GkPdVavydGswsE wfrra THTR_SACER : 249- 264: fvlre Ll--GhTnVknydGswtE ygslv THTR_SYNP7 : 208- 224: prppa Lfs-GeQqVfirnGhipG arnip P 16: 20.0178 9( 9) L-x(1,3)-G-x(1,3)-V-x-[ILV]-x-[DGN]-G Occurences: 9(9) THTR_BOVIN : 262- 273: alaay Lc--GkpdVaIyDG swfew THTR_CHICK : 259- 270: alaay Lc--GkpdVaVyDG swsew THTR_CRIGR : 262- 273: alaay Lc--GkpdVaVyDG swsew THTR_ECOLI : 107- 120: rawwm LrtfGvekVsIlGG glagw THTR_HUMAN : 262- 273: algay Lc--GkpdVpIyDG swvew THTR_MYCLE : 113- 124: lwvft Lf--GhpdVrLlNG grdlw THTR_RAT : 261- 272: alaay Lc--GkpdVaVyDG swsew THTR_SACER : 100- 111: ywyfk Ly--GhsdVkLlDG grkkw THTR_SYNP7 : 208- 220: prppa Lfs-GeqqVfIrNG hipga Q 17: 19.9141 9( 9) P-G-A-x(2)-[FILMV]-[DP]-x(2)-[ENQT] Occurences: 9(9) THTR_BOVIN : 53- 62: lerhv PGAsfFDieE crdka THTR_CHICK : 202- 211: esghi PGAvnMPfsT fltes THTR_CRIGR : 53- 62: qerhv PGAsfFDieE crdtt THTR_ECOLI : 196- 205: rrghi PGAlnVPwtE lvreg THTR_HUMAN : 54- 63: eerhi PGAafFDidQ csdrt THTR_MYCLE : 53- 62: dvghi PGAvkVDwhT dlndp THTR_RAT : 52- 61: qerhv PGAsfFDieE crdtt THTR_SACER : 40- 49: dgghi PGAikLDwkN elqdh THTR_SYNP7 : 223- 232: rnghi PGArnIPwpT ftean R 18: 18.4167 13( 9) V-x(2)-Y-x(0,1)-D-G-[ADNS] Occurences: 13(9) THTR_BOVIN : 95- 101: sndth VvvY-DGD dlgsf THTR_BOVIN : 268- 274: cgkpd VaiY-DGS wfewf THTR_CHICK : 95- 101: sndth VvvY-DGD elgtf THTR_CHICK : 265- 271: cgkpd VavY-DGS wsewf THTR_CRIGR : 95- 101: sndth VvvY-DGD nlgsf THTR_CRIGR : 268- 274: cgkpd VavY-DGS wsewf THTR_ECOLI : 258- 264: ldvpn VklY-DGA wsewg THTR_HUMAN : 268- 274: cgkpd VpiY-DGS wvewy THTR_MYCLE : 267- 273: lgkpg VrnY-DGS wtewg THTR_RAT : 94- 100: sndth VvvY-DGD dlgsf THTR_RAT : 267- 273: cgkpd VavY-DGS wsewf THTR_SACER : 255- 261: lghtn VknY-DGS wteyg THTR_SYNP7 : 120- 127: snndt VlvYsDGN dvlga S 19: 17.3014 10( 9) A-x(3,5)-L-x(0,2)-A-x-L-x(3)-[NPS] Occurences: 10(9) THTR_BOVIN : 253- 266: rkgvt Achia-La-AyLcgkP dvaiy THTR_CHICK : 250- 263: rkgvt Achia-La-AyLcgkP dvavy THTR_CRIGR : 253- 266: rkgvt Achia-La-AyLcgkP dvavy THTR_ECOLI : 243- 257: gsgvt Aavvl-LalAtLdvpN vklyd THTR_ECOLI : 244- 257: sgvta AvvllaL--AtLdvpN vklyd THTR_ECOLI : 244- 257: sgvta Avvl--LalAtLdvpN vklyd THTR_HUMAN : 253- 266: gsgvt Achva-Lg-AyLcgkP dvpiy THTR_MYCLE : 160- 173: dapir AfkddvL--AiLgtqP lidvr THTR_RAT : 252- 265: rkgvt Achia-La-AyLcgkP dvavy THTR_SACER : 170- 183: spdef Agkl--LapAhLpqeS aqrag THTR_SYNP7 : 16- 29: qkafl Avis--LvvAvLlavP gwltp T 20: 15.6802 9( 9) G-x(3)-V-x(2)-L-x(2,4)-G Occurences: 9(9) THTR_BOVIN : 119- 129: mfrvf GhrtVsvLng--G frnwl THTR_CHICK : 119- 129: mfraf GhreVsvLng--G fknwv THTR_CRIGR : 119- 129: mfrvf GhrtVsvLng--G frnwl THTR_ECOLI : 111- 121: mlrtf GvekVsiLgg--G lagwq THTR_HUMAN : 120- 130: mfraf GhhaVslLdg--G lrhwl THTR_MYCLE : 115- 125: vftlf GhpdVrlLng--G rdlwl THTR_RAT : 118- 128: mfrvf GhrtVsvLng--G frnwl THTR_SACER : 102- 112: yfkly GhsdVklLdg--G rkkwe THTR_SYNP7 : 131- 143: gndvl GatlVayLlersG vqnia Number of patterns evaluated by Pratt:4242 Total running time: 3 seconds