------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file RF_PROK_I PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RF_PROK_I.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RF1M_KLULA 396 RF1M_SCHPO 396 RF1M_YEAST 413 RF1_BACSU 356 RF1_ECOLI 360 RF1_HAEIN 361 RF1_MYCLE 357 RF1_PSEAE 96 RF1_SALTY 360 RF2_BACSU 326 RF2_ECOLI 365 RF2_HAEIN 365 RF2_SALTY 365 RFH_ECOLI 141 YAEJ_ECOLI 140 YAEJ_PSEPU 137 Pratt run started at Thu Feb 6 21:05:22 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 39( 16) L-x(0,1)-E-x(3,4)-E 2: 11.5102 33( 16) A-x(1,2)-L-x(0,1)-E 3: 11.0102 49( 16) A-x(1,3)-L-x(0,1)-A 4: 11.0102 28( 16) A-x(1,2)-A-x(1,3)-L 5: 11.0102 26( 16) E-x(4,5)-R-x(0,2)-R 6: 11.0102 24( 16) E-x(3,4)-R-x(0,2)-R 7: 11.0102 35( 16) L-x(4,5)-E-x(2,4)-A 8: 11.0102 32( 16) A-x(1,2)-L-x(0,2)-L 9: 11.0102 42( 16) E-x(3,4)-A-x(0,2)-L 10: 11.0102 54( 16) E-x(2,3)-A-x(0,2)-L 11: 11.0102 59( 16) E-x(1,3)-A-x(0,1)-L 12: 11.0102 28( 16) L-x(1,3)-A-x(1,2)-L 13: 11.0102 32( 16) L-x(0,2)-A-x(1,2)-L 14: 11.0102 28( 16) K-x(2,3)-A-x(1,3)-L 15: 11.0102 28( 16) A-x(3,4)-E-x(2,4)-E 16: 11.0102 39( 16) A-x(1,2)-L-x(0,2)-A 17: 11.0102 36( 16) L-x(0,1)-A-x(0,2)-L 18: 11.0102 47( 16) A-x(1,3)-L-x(2,3)-L 19: 11.0102 32( 16) A-x(1,3)-L-x(1,2)-L 20: 10.5102 28( 16) R-x(1,3)-A-x(2,4)-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.8973 22( 16) A-x(1,2)-A-x(1,3)-L-x-[ADEST] B 2: 11.5102 39( 16) L-x(0,1)-E-x(3,4)-E C 3: 11.5102 33( 16) A-x(1,2)-L-x(0,1)-E D 4: 11.0102 49( 16) A-x(1,3)-L-x(0,1)-A E 5: 11.0102 26( 16) E-x(4,5)-R-x(0,2)-R F 6: 11.0102 24( 16) E-x(3,4)-R-x(0,2)-R G 7: 11.0102 35( 16) L-x(4,5)-E-x(2,4)-A H 8: 11.0102 32( 16) A-x(1,2)-L-x(0,2)-L I 9: 11.0102 42( 16) E-x(3,4)-A-x(0,2)-L J 10: 11.0102 54( 16) E-x(2,3)-A-x(0,2)-L K 11: 11.0102 59( 16) E-x(1,3)-A-x(0,1)-L L 12: 11.0102 28( 16) L-x(1,3)-A-x(1,2)-L M 13: 11.0102 32( 16) L-x(0,2)-A-x(1,2)-L N 14: 11.0102 28( 16) K-x(2,3)-A-x(1,3)-L O 15: 11.0102 28( 16) A-x(3,4)-E-x(2,4)-E P 16: 11.0102 39( 16) A-x(1,2)-L-x(0,2)-A Q 17: 11.0102 36( 16) L-x(0,1)-A-x(0,2)-L R 18: 11.0102 47( 16) A-x(1,3)-L-x(2,3)-L S 19: 11.0102 32( 16) A-x(1,3)-L-x(1,2)-L T 20: 10.5102 28( 16) R-x(1,3)-A-x(2,4)-Q Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.8973 22( 16) A-x(1,2)-A-x(1,3)-L-x-[ADEST] Occurences: 22(16) RF1M_KLULA : 107- 115: reeae AdiAal-LpD lnktg RF1M_KLULA : 301- 309: qhrnk Ak-AfaiLrA rlaek RF1M_KLULA : 303- 309: rnkak Af-Ai--LrA rlaek RF1M_SCHPO : 158- 166: ggtea AifAne-LvE myfqy RF1M_YEAST : 320- 328: qhknk Ak-AftiLrA rlaek RF1_BACSU : 59- 67: aseql Ad-AkamLeE kldae RF1_BACSU : 61- 67: eqlad Ak-Am--LeE kldae RF1_BACSU : 200- 207: ihtst AtvAc--LpE aeeve RF1_ECOLI : 268- 276: qhknk Ak-AlsvLgA rihaa RF1_HAEIN : 269- 277: qhknk Ak-AmsvLaS rivqa RF1_MYCLE : 17- 25: aelel Al-AdpeLhS npaea RF1_PSEAE : 65- 71: adleg Aq-Al--LkD sdpel RF1_SALTY : 268- 276: qhknk Ak-AlsvLgA rihaa RF2_BACSU : 19- 26: leske AriAe--LdE qmadp RF2_ECOLI : 99- 105: etfne Av-Ae--LdA leekl RF2_HAEIN : 99- 105: dtfne Av-Ae--LdE leqql RF2_SALTY : 99- 105: etfne Av-Ae--LnT leekl RFH_ECOLI : 67- 75: nktds AvrAth-LaS gisvk YAEJ_ECOLI : 86- 93: elnre AalAr--LvA mikel YAEJ_ECOLI : 87- 93: lnrea Al-Ar--LvA mikel YAEJ_PSEPU : 85- 93: qdqnr Ad-AlarLaE liiaa YAEJ_PSEPU : 87- 93: qnrad Al-Ar--LaE liiaa B 2: 11.5102 39( 16) L-x(0,1)-E-x(3,4)-E Occurences: 39(16) RF1M_KLULA : 311- 318: ilrar LaEkerlE keeke RF1M_KLULA : 317- 323: aeker L-EkeekE rnark RF1M_SCHPO : 190- 195: savqg L-Eait-E aifsi RF1M_YEAST : 330- 337: ilrar LaEkerlE keeke RF1M_YEAST : 336- 342: aeker L-EkeekE rkark RF1_BACSU : 31- 37: ndpkk LrEysk-E qsdiq RF1_BACSU : 65- 72: dakam LeEkldaE mrdmv RF1_BACSU : 205- 212: atvac LpEaeevE vdihe RF1_BACSU : 331- 337: kldqi L-EgkldE vveal RF1_ECOLI : 9- 14: sivak L-Ealh-E rheev RF1_ECOLI : 12- 18: aklea LhErhe-E vqall RF1_ECOLI : 340- 347: gkldm LiEpiiqE hqadq RF1_HAEIN : 10- 15: siiak L-Eslk-E ryeel RF1_HAEIN : 13- 19: akles LkErye-E leall RF1_HAEIN : 210- 217: avmpe LpEsempE inpad RF1_MYCLE : 8- 15: sidvl LiEhaelE lalad RF1_MYCLE : 77- 83: deiae L-EsriaE lttql RF1_MYCLE : 105- 111: pddiv L-EvksgE ggees RF1_PSEAE : 79- 86: pelrd LaEeevaE argrl RF1_SALTY : 9- 14: sivak L-Ealh-E rheev RF1_SALTY : 12- 18: aklea LhErhe-E vqall RF1_SALTY : 340- 347: gkldm LiEpivqE hqadl RF2_BACSU : 60- 66: nsykk LnEshe-E lqmth RF2_BACSU : 84- 89: dtdlq L-Elek-E lkslt RF2_BACSU : 294- 300: eqqae LdEirg-E qkeig RF2_ECOLI : 34- 40: akker LeEvna-E leqpd RF2_ECOLI : 34- 40: akker L-EevnaE leqpd RF2_ECOLI : 83- 89: edvsg LlElav-E addee RF2_ECOLI : 84- 89: dvsgl L-Elav-E addee RF2_HAEIN : 34- 40: akver LeEvng-E leqpd RF2_HAEIN : 34- 40: akver L-EevngE leqpd RF2_HAEIN : 73- 78: ntikn L-Eqgl-E dvdgl RF2_HAEIN : 83- 89: edvdg LlElai-E aeded RF2_HAEIN : 84- 89: dvdgl L-Elai-E aeded RF2_HAEIN : 106- 111: aelde L-Eqql-E klefr RF2_SALTY : 34- 40: akker LeEvna-E leqpd RF2_SALTY : 34- 40: akker L-EevnaE leqpd RF2_SALTY : 83- 89: ddvsg LlElav-E addee RF2_SALTY : 84- 89: dvsgl L-Elav-E addee RFH_ECOLI : 102- 108: liawk L-EqqqqE nsaal YAEJ_ECOLI : 48- 54: irass LpEyyk-E rllaa YAEJ_PSEPU : 48- 54: ipass LpEfyk-E rllal C 3: 11.5102 33( 16) A-x(1,2)-L-x(0,1)-E Occurences: 33(16) RF1M_KLULA : 309- 313: failr Ar-LaE kerle RF1M_SCHPO : 161- 166: eaaif AneLvE myfqy RF1M_YEAST : 328- 332: ftilr Ar-LaE kerle RF1M_YEAST : 406- 411: dster AkeLlE sn RF1_BACSU : 63- 66: ladak Am-L-E eklda RF1_BACSU : 63- 67: ladak Am-LeE kldae RF1_BACSU : 203- 207: statv Ac-LpE aeeve RF1_ECOLI : 7- 10: kpsiv Ak-L-E alher RF1_ECOLI : 111- 114: ddern Af-L-E vragt RF1_ECOLI : 354- 358: qadql Aa-LsE qe RF1_HAEIN : 8- 11: kdsii Ak-L-E slker RF1_HAEIN : 355- 359: qadql Aa-LsE qn RF1_MYCLE : 12- 15: llieh Ae-L-E lalad RF1_MYCLE : 75- 78: fadei Ae-L-E sriae RF1_PSEAE : 60- 63: yrkvq Ad-L-E gaqal RF1_SALTY : 7- 10: kpsiv Ak-L-E alher RF1_SALTY : 111- 114: ddern Af-L-E vragt RF1_SALTY : 354- 358: qadll Aa-LsE qe RF2_BACSU : 22- 26: keari Ae-LdE qmadp RF2_BACSU : 115- 118: ydknn Ai-L-E lhpga RF2_BACSU : 292- 296: ieeqq Ae-LdE irgeq RF2_ECOLI : 39- 42: leevn Ae-L-E qpdvw RF2_ECOLI : 111- 114: leekl Aq-L-E frrmf RF2_ECOLI : 145- 149: eaqdw AsmL-E rmylr RF2_ECOLI : 293- 297: mkqmk Ak-LyE lemqk RF2_HAEIN : 101- 105: fneav Ae-LdE leqql RF2_HAEIN : 293- 297: mkqlk Ak-LyE lelqk RF2_SALTY : 39- 42: leevn Ae-L-E qpdvw RF2_SALTY : 111- 114: leekl Aq-L-E frrmf RF2_SALTY : 293- 297: mkqmk Ak-LyE lemqk RFH_ECOLI : 99- 103: arlli AwkL-E qqqqe YAEJ_ECOLI : 45- 50: rfdir AssLpE yyker YAEJ_PSEPU : 45- 50: rfdip AssLpE fyker YAEJ_PSEPU : 89- 93: radal Ar-LaE liiaa D 4: 11.0102 49( 16) A-x(1,3)-L-x(0,1)-A Occurences: 49(16) RF1M_KLULA : 303- 309: rnkak AfaiLrA rlaek RF1M_KLULA : 305- 309: kakaf Ai--LrA rlaek RF1M_KLULA : 309- 312: failr Ar--L-A ekerl RF1M_SCHPO : 186- 192: fisks AvqgLeA iteai RF1M_SCHPO : 314- 318: lnsrl Aa--LnA akene RF1M_YEAST : 86- 90: kqkhy Ak--LsA ltdtf RF1M_YEAST : 322- 328: knkak AftiLrA rlaek RF1M_YEAST : 328- 331: ftilr Ar--L-A ekerl RF1_BACSU : 54- 59: rqyrd AseqL-A dakam RF1_BACSU : 123- 127: aggee Aa--LfA gnlyr RF1_BACSU : 268- 274: knkek AmkvLrA riydk RF1_ECOLI : 7- 11: kpsiv Ak--LeA lherh RF1_ECOLI : 124- 128: tggde Aa--LfA gdlfr RF1_ECOLI : 270- 276: knkak AlsvLgA rihaa RF1_ECOLI : 350- 354: iqehq Adq-L-A alseq RF1_ECOLI : 350- 355: iqehq Adq-LaA lseqe RF1_HAEIN : 271- 276: knkak AmsvL-A srivq RF1_HAEIN : 351- 355: iteyq Adq-L-A alseq RF1_HAEIN : 351- 356: iteyq Adq-LaA lseqn RF1_MYCLE : 12- 17: llieh AeleL-A ladpe RF1_MYCLE : 38- 41: agrrf Ar--L-A pivat RF1_MYCLE : 60- 64: ddlqt Are-L-A agdes RF1_MYCLE : 60- 65: ddlqt Are-LaA gdesf RF1_MYCLE : 120- 124: esalf Aad-L-A rmyir RF1_MYCLE : 121- 124: salfa Ad--L-A rmyir RF1_MYCLE : 154- 157: ggykd At--L-A ishkg RF1_MYCLE : 271- 276: qnktr AlqvL-A arlqa RF1_MYCLE : 271- 277: qnktr AlqvLaA rlqam RF1_MYCLE : 276- 281: alqvl Aar-LqA maeeq RF1_MYCLE : 277- 281: lqvla Ar--LqA maeeq RF1_PSEAE : 87- 92: eevae ArgrL-A prrq RF1_SALTY : 7- 11: kpsiv Ak--LeA lherh RF1_SALTY : 124- 128: tggde Aa--LfA gdlfr RF1_SALTY : 270- 276: knkak AlsvLgA rihaa RF1_SALTY : 350- 354: vqehq Adl-L-A alseq RF1_SALTY : 350- 354: vqehq Ad--LlA alseq RF1_SALTY : 350- 355: vqehq Adl-LaA lseqe RF2_BACSU : 2- 6: m Asr-L-A dfrgs RF2_BACSU : 175- 181: ikghn AygyLkA ekgvh RF2_BACSU : 274- 280: knrer AmkmLkA klyqr RF2_ECOLI : 99- 105: etfne AvaeLdA leekl RF2_ECOLI : 101- 105: fneav Ae--LdA leekl RF2_ECOLI : 359- 363: dqfie As--LkA gl RF2_HAEIN : 287- 293: knkdq AmkqLkA klyel RF2_HAEIN : 359- 363: drfie As--LkA gl RF2_SALTY : 359- 363: dqfie As--LkA gl RFH_ECOLI : 70- 74: dsavr Ath-L-A sgisv RFH_ECOLI : 89- 94: ersqh AnkrL-A rllia RFH_ECOLI : 94- 99: ankrl Arl-LiA wkleq YAEJ_ECOLI : 86- 89: elnre Aa--L-A rlvam YAEJ_ECOLI : 87- 93: lnrea AlarLvA mikel YAEJ_ECOLI : 89- 93: reaal Ar--LvA mikel YAEJ_PSEPU : 85- 89: qdqnr Ada-L-A rlael YAEJ_PSEPU : 87- 92: qnrad AlarL-A eliia YAEJ_PSEPU : 89- 92: radal Ar--L-A eliia E 5: 11.0102 26( 16) E-x(4,5)-R-x(0,2)-R Occurences: 26(16) RF1M_KLULA : 206- 214: dklkf Eagvh-RvqR vpate RF1M_KLULA : 318- 327: ekerl EkeekeRnaR kdqvs RF1M_SCHPO : 212- 220: ghlml Eggvh-RvqR tpate RF1M_SCHPO : 321- 329: lnaak Eneae-RlkR knqvt RF1M_YEAST : 213- 221: ilsie EagsydRl-R feagv RF1M_YEAST : 223- 231: drlrf Eagvh-RvqR ipste RF1M_YEAST : 337- 346: ekerl EkeekeRkaR ksqvs RF1_BACSU : 43- 52: qsdiq EtvdvyRqyR daseq RF1_BACSU : 177- 185: sklky Engah-RvqR vpete RF1_ECOLI : 178- 186: grlkf Esggh-RvqR vpate RF1_HAEIN : 179- 187: gqlkf Esggh-RvqR vpkte RF1_HAEIN : 290- 296: erqaa Eqtdm-R--R nllgs RF1_MYCLE : 29- 36: hsnpa EarkagR--R farla RF1_MYCLE : 179- 187: srmkf Eggvh-RvqR vpvte RF1_PSEAE : 46- 53: eyaev Epvil-Rf-R dyrkv RF1_PSEAE : 82- 90: rdlae EevaeaRg-R laprr RF1_PSEAE : 83- 90: dlaee Evaea-Rg-R laprr RF1_SALTY : 178- 186: grlkf Esggh-RvqR vpate RF2_BACSU : 182- 190: gylka Ekgvh-RlvR ispfd RF2_ECOLI : 195- 203: gwlrt Etgvh-RvvR kspfd RF2_HAEIN : 111- 117: leqql Eklef-R--R mfsge RF2_HAEIN : 195- 203: gwlrt Etgih-RlvR kspfd RF2_SALTY : 195- 203: gwlrt Etgvh-RlvR kspfd RFH_ECOLI : 125- 131: fhhqi Ergnp-R--R tftgm YAEJ_ECOLI : 101- 109: keltt Ekkar-RptR ptras YAEJ_PSEPU : 54- 63: pefyk ErllalRdsR itgdg F 6: 11.0102 24( 16) E-x(3,4)-R-x(0,2)-R Occurences: 24(16) RF1M_KLULA : 206- 214: dklkf EagvhRvqR vpate RF1M_KLULA : 320- 327: erlek Eeke-RnaR kdqvs RF1M_SCHPO : 212- 220: ghlml EggvhRvqR tpate RF1M_SCHPO : 321- 329: lnaak EneaeRlkR knqvt RF1M_YEAST : 223- 231: drlrf EagvhRvqR ipste RF1M_YEAST : 339- 346: erlek Eeke-RkaR ksqvs RF1_BACSU : 177- 185: sklky EngahRvqR vpete RF1_ECOLI : 178- 186: grlkf EsgghRvqR vpate RF1_ECOLI : 290- 295: krqqa East-R--R nllgs RF1_HAEIN : 179- 187: gqlkf EsgghRvqR vpkte RF1_HAEIN : 290- 296: erqaa EqtdmR--R nllgs RF1_MYCLE : 179- 187: srmkf EggvhRvqR vpvte RF1_PSEAE : 46- 53: eyaev EpvilRf-R dyrkv RF1_PSEAE : 83- 90: dlaee EvaeaRg-R laprr RF1_SALTY : 178- 186: grlkf EsgghRvqR vpate RF1_SALTY : 290- 295: krqqa East-R--R nllgs RF2_BACSU : 182- 190: gylka EkgvhRlvR ispfd RF2_ECOLI : 195- 203: gwlrt EtgvhRvvR kspfd RF2_HAEIN : 111- 117: leqql EklefR--R mfsge RF2_HAEIN : 195- 203: gwlrt EtgihRlvR kspfd RF2_SALTY : 195- 203: gwlrt EtgvhRlvR kspfd RFH_ECOLI : 125- 131: fhhqi ErgnpR--R tftgm YAEJ_ECOLI : 101- 106: keltt Ekka-R--R ptrpt YAEJ_ECOLI : 101- 109: keltt EkkarRptR ptras YAEJ_PSEPU : 120- 125: ktrrl Egka-R--R stvka G 7: 11.0102 35( 16) L-x(4,5)-E-x(2,4)-A Occurences: 35(16) RF1M_KLULA : 97- 107: qeile LdpslrEeae-A diaal RF1M_KLULA : 101- 110: eldps Lreea-Eadi-A allpd RF1M_KLULA : 101- 111: eldps Lreea-EadiaA llpdl RF1M_KLULA : 234- 245: aaviv LpkmgeEsesdA yertf RF1M_KLULA : 317- 326: aeker LekeekErn--A rkdqv RF1M_SCHPO : 316- 324: srlaa Lnaak-Ene--A erlkr RF1M_YEAST : 52- 62: telsp LlvkqaEkye-A elkdl RF1M_YEAST : 53- 62: elspl Lvkqa-Ekye-A elkdl RF1M_YEAST : 118- 127: vsdps Lraea-Eqey-A elvpq RF1M_YEAST : 336- 345: aeker LekeekErk--A rksqv RF1_BACSU : 140- 150: sryae LqgwktEvme-A nvtgt RF1_BACSU : 331- 341: kldqi LegkldEvve-A lived RF1_ECOLI : 12- 21: aklea LherheEvq--A llgda RF1_ECOLI : 12- 21: aklea Lherh-Eevq-A llgda RF1_HAEIN : 13- 22: akles LkeryeEle--A llgdv RF1_HAEIN : 13- 22: akles Lkery-Eele-A llgdv RF1_HAEIN : 69- 79: eeaei Llddp-EmkemA qmeie RF1_MYCLE : 7- 17: qsidv LliehaElel-A ladpe RF1_MYCLE : 8- 17: sidvl Lieha-Elel-A ladpe RF1_MYCLE : 23- 33: ladpe LhsnpaEark-A grrfa RF1_MYCLE : 57- 65: sardd Lqtar-Ela--A gdesf RF1_MYCLE : 63- 71: qtare Laagd-Esf--A deiae RF1_MYCLE : 279- 287: vlaar Lqama-Eeq--A lanas RF1_MYCLE : 279- 289: vlaar LqamaeEqal-A nasad RF1_MYCLE : 279- 289: vlaar Lqama-EeqalA nasad RF1_PSEAE : 12- 21: kkldv LsdryeElt--A llgda RF1_PSEAE : 12- 21: kkldv Lsdry-Eelt-A llgda RF1_PSEAE : 69- 80: gaqal LkdsdpElrdlA eeeva RF1_PSEAE : 76- 85: dsdpe LrdlaeEev--A eargr RF1_PSEAE : 76- 85: dsdpe Lrdla-Eeev-A eargr RF1_PSEAE : 76- 87: dsdpe LrdlaeEevaeA rgrla RF1_SALTY : 12- 21: aklea LherheEvq--A llgda RF1_SALTY : 12- 21: aklea Lherh-Eevq-A llgda RF2_BACSU : 12- 22: dfrgs LdleskEari-A eldeq RF2_BACSU : 282- 292: mlkak LyqrriEeqq-A eldei RF2_ECOLI : 103- 111: eavae Ldale-Ekl--A qlefr RF2_ECOLI : 353- 363: vldgs Ldqfi-EaslkA gl RF2_HAEIN : 353- 363: vldgd Ldrfi-EaslkA gl RF2_SALTY : 103- 111: eavae Lntle-Ekl--A qlefr RF2_SALTY : 353- 363: vldgs Ldqfi-EaslkA gl RFH_ECOLI : 102- 111: liawk LeqqqqEns--A alksq RFH_ECOLI : 102- 112: liawk LeqqqqEnsa-A lksqr YAEJ_ECOLI : 48- 58: irass LpeyykErll-A ashhl YAEJ_ECOLI : 48- 59: irass LpeyykErllaA shhli YAEJ_PSEPU : 48- 58: ipass LpefykErll-A lrdsr YAEJ_PSEPU : 88- 97: nrada Larla-Elii-A agkte YAEJ_PSEPU : 88- 98: nrada Larla-EliiaA gktek H 8: 11.0102 32( 16) A-x(1,2)-L-x(0,2)-L Occurences: 32(16) RF1M_KLULA : 110- 113: aeadi Aa-L--L pdlnk RF1M_KLULA : 110- 116: aeadi AalLpdL nktgd RF1M_KLULA : 111- 116: eadia Al-LpdL nktgd RF1M_KLULA : 387- 391: sseqk AkqL--L qdmsa RF1M_SCHPO : 305- 309: qnkek Af-Lv-L nsrla RF1M_YEAST : 62- 67: aekye Ae-LkdL dkdls RF1M_YEAST : 86- 91: kqkhy Ak-LsaL tdtfi RF1M_YEAST : 406- 410: dster AkeL--L esn RF1_BACSU : 241- 247: nttms AvrLthL ptgvv RF1_ECOLI : 7- 12: kpsiv Ak-LeaL herhe RF1_ECOLI : 268- 274: qhknk AkaLsvL garih RF1_ECOLI : 350- 356: iqehq AdqLaaL seqe RF1_HAEIN : 8- 13: kdsii Ak-LesL kerye RF1_HAEIN : 66- 70: qniee AeiL--L ddpem RF1_HAEIN : 351- 357: iteyq AdqLaaL seqn RF1_MYCLE : 12- 16: llieh Ae-Le-L aladp RF1_PSEAE : 3- 6: mk As-L--L kkldv RF1_PSEAE : 3- 9: mk AslLkkL dvlsd RF1_PSEAE : 65- 69: adleg AqaL--L kdsdp RF1_SALTY : 7- 12: kpsiv Ak-LeaL herhe RF1_SALTY : 268- 274: qhknk AkaLsvL garih RF1_SALTY : 350- 353: vqehq Ad-L--L aalse RF1_SALTY : 350- 356: vqehq AdlLaaL seqe RF2_BACSU : 115- 119: ydknn Ai-Le-L hpgag RF2_ECOLI : 101- 106: fneav Ae-LdaL eekla RF2_ECOLI : 293- 298: mkqmk Ak-LyeL emqkk RF2_HAEIN : 101- 106: fneav Ae-LdeL eqqle RF2_HAEIN : 293- 298: mkqlk Ak-LyeL elqkk RF2_SALTY : 101- 106: fneav Ae-LntL eekla RF2_SALTY : 145- 149: eaqdw AsmL--L rmylr RF2_SALTY : 293- 298: mkqmk Ak-LyeL emqkk RFH_ECOLI : 94- 97: ankrl Ar-L--L iawkl YAEJ_ECOLI : 86- 91: elnre Aa-LarL vamik YAEJ_PSEPU : 85- 91: qdqnr AdaLarL aelii YAEJ_PSEPU : 89- 94: radal Ar-LaeL iiaag I 9: 11.0102 42( 16) E-x(3,4)-A-x(0,2)-L Occurences: 42(16) RF1M_KLULA : 106- 112: lreea EadiaA--L lpdln RF1M_KLULA : 106- 112: lreea Eadi-Aa-L lpdln RF1M_KLULA : 106- 113: lreea EadiaAl-L pdlnk RF1M_KLULA : 106- 113: lreea Eadi-AalL pdlnk RF1M_SCHPO : 156- 164: gvggt EaaifAneL vemyf RF1M_YEAST : 58- 64: lvkqa Ekye-Ae-L kdldk RF1M_YEAST : 123- 129: lraea Eqey-Ae-L vpqye RF1_BACSU : 122- 130: aagge EaalfAgnL yrmys RF1_BACSU : 337- 342: egkld Evve-A--L ivedq RF1_ECOLI : 17- 22: lherh Eevq-A--L lgdaq RF1_ECOLI : 17- 23: lherh Eevq-Al-L gdaqt RF1_ECOLI : 33- 38: tiadq Erfr-A--L sreya RF1_ECOLI : 123- 131: gtggd EaalfAgdL frmys RF1_ECOLI : 208- 214: vavmp Elpd-Ae-L pdinp RF1_HAEIN : 18- 23: lkery Eele-A--L lgdvs RF1_HAEIN : 18- 24: lkery Eele-Al-L gdvsv RF1_HAEIN : 124- 132: gtggd EagifAgdL frmys RF1_HAEIN : 217- 223: esemp Einp-Ad-L ridty RF1_MYCLE : 13- 18: lieha Elel-A--L adpel RF1_MYCLE : 78- 84: eiael Esri-Ae-L ttqlt RF1_MYCLE : 115- 123: gegge EsalfAadL armyi RF1_PSEAE : 17- 22: lsdry Eelt-A--L lgdae RF1_PSEAE : 17- 23: lsdry Eelt-Al-L gdaev RF1_PSEAE : 63- 68: vqadl Egaq-A--L lkdsd RF1_PSEAE : 63- 69: vqadl Egaq-Al-L kdsdp RF1_SALTY : 17- 22: lherh Eevq-A--L lgdag RF1_SALTY : 17- 23: lherh Eevq-Al-L gdagi RF1_SALTY : 123- 131: gtggd EaalfAgdL frmys RF1_SALTY : 208- 214: vavmp Elpe-Ae-L pdinp RF2_BACSU : 18- 24: dlesk Eari-Ae-L deqma RF2_BACSU : 288- 294: yqrri Eeqq-Ae-L deirg RF2_ECOLI : 35- 41: kkerl Eevn-Ae-L eqpdv RF2_ECOLI : 49- 56: pdvwn Eper-AqaL gkers RF2_ECOLI : 51- 56: vwnep Eraq-A--L gkers RF2_ECOLI : 107- 113: eldal Eekl-Aq-L efrrm RF2_ECOLI : 140- 148: gsggt EaqdwAsmL ermyl RF2_ECOLI : 233- 239: ddidi Einp-Ad-L ridvy RF2_ECOLI : 358- 365: ldqfi EaslkAg-L RF2_HAEIN : 233- 239: ddidi Einp-Ad-L ridvy RF2_HAEIN : 358- 365: ldrfi EaslkAg-L RF2_SALTY : 35- 41: kkerl Eevn-Ae-L eqpdv RF2_SALTY : 49- 56: pdvwn Eper-AqaL gkers RF2_SALTY : 51- 56: vwnep Eraq-A--L gkers RF2_SALTY : 107- 113: elntl Eekl-Aq-L efrrm RF2_SALTY : 140- 148: gsggt EaqdwAsmL lrmyl RF2_SALTY : 358- 365: ldqfi EaslkAg-L RFH_ECOLI : 108- 113: eqqqq Ensa-A--L ksqrr YAEJ_ECOLI : 81- 88: eyrsq ElnreAa-L arlva YAEJ_ECOLI : 85- 91: qelnr Eaal-Ar-L vamik YAEJ_PSEPU : 54- 59: pefyk Erll-A--L rdsri J 10: 11.0102 54( 16) E-x(2,3)-A-x(0,2)-L Occurences: 54(16) RF1M_KLULA : 106- 112: lreea EadiAa-L lpdln RF1M_KLULA : 106- 113: lreea EadiAalL pdlnk RF1M_KLULA : 384- 390: dafss Eqk-AkqL lqdms RF1M_SCHPO : 321- 327: lnaak Ene-AerL krknq RF1M_YEAST : 58- 64: lvkqa EkyeAe-L kdldk RF1M_YEAST : 123- 129: lraea EqeyAe-L vpqye RF1_BACSU : 121- 125: gaagg Eea-A--L fagnl RF1_BACSU : 337- 342: egkld EvveA--L ivedq RF1_BACSU : 345- 351: ealiv Edq-AskL qqseg RF1_ECOLI : 17- 22: lherh EevqA--L lgdaq RF1_ECOLI : 17- 23: lherh EevqAl-L gdaqt RF1_ECOLI : 18- 22: herhe Evq-A--L lgdaq RF1_ECOLI : 18- 23: herhe Evq-Al-L gdaqt RF1_ECOLI : 33- 38: tiadq ErfrA--L sreya RF1_ECOLI : 108- 113: kdpdd Ern-Af-L evrag RF1_ECOLI : 208- 214: vavmp ElpdAe-L pdinp RF1_ECOLI : 347- 353: epiiq Ehq-AdqL aalse RF1_HAEIN : 18- 23: lkery EeleA--L lgdvs RF1_HAEIN : 18- 24: lkery EeleAl-L gdvsv RF1_HAEIN : 19- 23: kerye Ele-A--L lgdvs RF1_HAEIN : 19- 24: kerye Ele-Al-L gdvsv RF1_HAEIN : 217- 223: esemp EinpAd-L ridty RF1_HAEIN : 348- 354: qpiit Eyq-AdqL aalse RF1_MYCLE : 13- 18: lieha ElelA--L adpel RF1_MYCLE : 78- 84: eiael EsriAe-L ttqlt RF1_MYCLE : 114- 118: sgegg Ees-A--L faadl RF1_MYCLE : 284- 288: lqama Eeq-A--L anasa RF1_PSEAE : 17- 22: lsdry EeltA--L lgdae RF1_PSEAE : 17- 23: lsdry EeltAl-L gdaev RF1_PSEAE : 18- 22: sdrye Elt-A--L lgdae RF1_PSEAE : 18- 23: sdrye Elt-Al-L gdaev RF1_PSEAE : 63- 68: vqadl EgaqA--L lkdsd RF1_PSEAE : 63- 69: vqadl EgaqAl-L kdsdp RF1_SALTY : 17- 22: lherh EevqA--L lgdag RF1_SALTY : 17- 23: lherh EevqAl-L gdagi RF1_SALTY : 18- 22: herhe Evq-A--L lgdag RF1_SALTY : 18- 23: herhe Evq-Al-L gdagi RF1_SALTY : 108- 113: kdpdd Ern-Af-L evrag RF1_SALTY : 208- 214: vavmp ElpeAe-L pdinp RF1_SALTY : 347- 352: epivq Ehq-Ad-L laals RF1_SALTY : 347- 353: epivq Ehq-AdlL aalse RF2_BACSU : 18- 24: dlesk EariAe-L deqma RF2_BACSU : 288- 294: yqrri EeqqAe-L deirg RF2_BACSU : 289- 294: qrrie Eqq-Ae-L deirg RF2_ECOLI : 35- 41: kkerl EevnAe-L eqpdv RF2_ECOLI : 36- 41: kerle Evn-Ae-L eqpdv RF2_ECOLI : 49- 56: pdvwn EperAqaL gkers RF2_ECOLI : 51- 56: vwnep EraqA--L gkers RF2_ECOLI : 98- 103: eetfn Eav-Ae-L dalee RF2_ECOLI : 102- 106: neava Eld-A--L eekla RF2_ECOLI : 107- 113: eldal EeklAq-L efrrm RF2_ECOLI : 108- 113: ldale Ekl-Aq-L efrrm RF2_ECOLI : 233- 239: ddidi EinpAd-L ridvy RF2_HAEIN : 98- 103: edtfn Eav-Ae-L deleq RF2_HAEIN : 233- 239: ddidi EinpAd-L ridvy RF2_SALTY : 35- 41: kkerl EevnAe-L eqpdv RF2_SALTY : 36- 41: kerle Evn-Ae-L eqpdv RF2_SALTY : 49- 56: pdvwn EperAqaL gkers RF2_SALTY : 51- 56: vwnep EraqA--L gkers RF2_SALTY : 98- 103: eetfn Eav-Ae-L ntlee RF2_SALTY : 107- 113: elntl EeklAq-L efrrm RF2_SALTY : 108- 113: lntle Ekl-Aq-L efrrm RFH_ECOLI : 108- 113: eqqqq EnsaA--L ksqrr RFH_ECOLI : 108- 113: eqqqq Ens-Aa-L ksqrr YAEJ_ECOLI : 85- 91: qelnr EaalAr-L vamik YAEJ_PSEPU : 54- 59: pefyk ErllA--L rdsri K 11: 11.0102 59( 16) E-x(1,3)-A-x(0,1)-L Occurences: 59(16) RF1M_KLULA : 106- 112: lreea EadiAaL lpdln RF1M_SCHPO : 303- 307: qhqnk Ek--AfL vlnsr RF1M_YEAST : 58- 64: lvkqa EkyeAeL kdldk RF1M_YEAST : 123- 129: lraea EqeyAeL vpqye RF1M_YEAST : 125- 129: aeaeq Ey--AeL vpqye RF1_BACSU : 121- 125: gaagg Eea-A-L fagnl RF1_BACSU : 121- 125: gaagg Ee--AaL fagnl RF1_BACSU : 122- 125: aagge Ea--A-L fagnl RF1_BACSU : 337- 342: egkld EvveA-L ivedq RF1_ECOLI : 17- 22: lherh EevqA-L lgdaq RF1_ECOLI : 17- 23: lherh EevqAlL gdaqt RF1_ECOLI : 18- 22: herhe Evq-A-L lgdaq RF1_ECOLI : 18- 23: herhe Evq-AlL gdaqt RF1_ECOLI : 33- 38: tiadq ErfrA-L sreya RF1_ECOLI : 41- 45: ralsr Ey--AqL sdvsr RF1_ECOLI : 108- 113: kdpdd Ern-AfL evrag RF1_ECOLI : 123- 126: gtggd Ea--A-L fagdl RF1_ECOLI : 208- 214: vavmp ElpdAeL pdinp RF1_HAEIN : 18- 23: lkery EeleA-L lgdvs RF1_HAEIN : 18- 24: lkery EeleAlL gdvsv RF1_HAEIN : 19- 23: kerye Ele-A-L lgdvs RF1_HAEIN : 19- 24: kerye Ele-AlL gdvsv RF1_HAEIN : 217- 223: esemp EinpAdL ridty RF1_MYCLE : 10- 14: dvlli Eh--AeL elala RF1_MYCLE : 13- 18: lieha ElelA-L adpel RF1_MYCLE : 15- 18: ehael El--A-L adpel RF1_MYCLE : 73- 77: esfad Ei--AeL esria RF1_MYCLE : 78- 84: eiael EsriAeL ttqlt RF1_MYCLE : 114- 118: sgegg Ees-A-L faadl RF1_MYCLE : 115- 118: gegge Es--A-L faadl RF1_MYCLE : 284- 288: lqama Eeq-A-L anasa RF1_MYCLE : 285- 288: qamae Eq--A-L anasa RF1_PSEAE : 17- 22: lsdry EeltA-L lgdae RF1_PSEAE : 17- 23: lsdry EeltAlL gdaev RF1_PSEAE : 18- 22: sdrye Elt-A-L lgdae RF1_PSEAE : 18- 23: sdrye Elt-AlL gdaev RF1_PSEAE : 63- 68: vqadl EgaqA-L lkdsd RF1_PSEAE : 63- 69: vqadl EgaqAlL kdsdp RF1_SALTY : 17- 22: lherh EevqA-L lgdag RF1_SALTY : 17- 23: lherh EevqAlL gdagi RF1_SALTY : 18- 22: herhe Evq-A-L lgdag RF1_SALTY : 18- 23: herhe Evq-AlL gdagi RF1_SALTY : 41- 45: ralsr Ey--AqL sdvsr RF1_SALTY : 108- 113: kdpdd Ern-AfL evrag RF1_SALTY : 123- 126: gtggd Ea--A-L fagdl RF1_SALTY : 208- 214: vavmp ElpeAeL pdinp RF1_SALTY : 347- 352: epivq Ehq-AdL laals RF2_BACSU : 18- 24: dlesk EariAeL deqma RF2_BACSU : 288- 294: yqrri EeqqAeL deirg RF2_BACSU : 289- 294: qrrie Eqq-AeL deirg RF2_ECOLI : 35- 41: kkerl EevnAeL eqpdv RF2_ECOLI : 36- 41: kerle Evn-AeL eqpdv RF2_ECOLI : 51- 56: vwnep EraqA-L gkers RF2_ECOLI : 98- 103: eetfn Eav-AeL dalee RF2_ECOLI : 102- 106: neava Eld-A-L eekla RF2_ECOLI : 107- 113: eldal EeklAqL efrrm RF2_ECOLI : 108- 113: ldale Ekl-AqL efrrm RF2_ECOLI : 233- 239: ddidi EinpAdL ridvy RF2_HAEIN : 98- 103: edtfn Eav-AeL deleq RF2_HAEIN : 233- 239: ddidi EinpAdL ridvy RF2_SALTY : 35- 41: kkerl EevnAeL eqpdv RF2_SALTY : 36- 41: kerle Evn-AeL eqpdv RF2_SALTY : 51- 56: vwnep EraqA-L gkers RF2_SALTY : 98- 103: eetfn Eav-AeL ntlee RF2_SALTY : 107- 113: elntl EeklAqL efrrm RF2_SALTY : 108- 113: lntle Ekl-AqL efrrm RFH_ECOLI : 108- 113: eqqqq EnsaA-L ksqrr RFH_ECOLI : 108- 113: eqqqq Ens-AaL ksqrr YAEJ_ECOLI : 85- 88: qelnr Ea--A-L arlva YAEJ_ECOLI : 85- 91: qelnr EaalArL vamik YAEJ_PSEPU : 54- 59: pefyk ErllA-L rdsri L 12: 11.0102 28( 16) L-x(1,3)-A-x(1,2)-L Occurences: 28(16) RF1M_KLULA : 36- 42: plhss LisrAe-L yvnel RF1M_KLULA : 188- 192: sgsgv Le--Ai-L nidep RF1M_KLULA : 307- 311: kafai Lr--Ar-L aeker RF1M_SCHPO : 37- 44: nvsrv LiekArsL sseyl RF1M_YEAST : 326- 330: kafti Lr--Ar-L aeker RF1_BACSU : 125- 130: geeaa Lf--AgnL yrmys RF1_ECOLI : 126- 131: gdeaa Lf--AgdL frmys RF1_ECOLI : 209- 214: avmpe Lpd-Ae-L pdinp RF1_HAEIN : 20- 24: eryee Le--Al-L gdvsv RF1_MYCLE : 8- 14: sidvl LiehAe-L elala RF1_MYCLE : 57- 63: sardd Lqt-AreL aagde RF1_MYCLE : 118- 123: geesa Lfa-Ad-L armyi RF1_MYCLE : 118- 123: geesa Lf--AadL armyi RF1_MYCLE : 272- 279: nktra LqvlAarL qamae RF1_MYCLE : 275- 279: ralqv La--Ar-L qamae RF1_PSEAE : 19- 23: dryee Lt--Al-L gdaev RF1_PSEAE : 62- 68: kvqad Leg-AqaL lkdsd RF1_SALTY : 126- 131: gdeaa Lf--AgdL frmys RF1_SALTY : 209- 214: avmpe Lpe-Ae-L pdinp RF1_SALTY : 352- 356: ehqad Ll--Aa-L seqe RF2_BACSU : 278- 282: ramkm Lk--Ak-L yqrri RF2_ECOLI : 361- 365: fieas Lk--Ag-L RF2_HAEIN : 291- 295: qamkq Lk--Ak-L yelel RF2_HAEIN : 361- 365: fieas Lk--Ag-L RF2_SALTY : 361- 365: fieas Lk--Ag-L RFH_ECOLI : 96- 102: krlar Lli-AwkL eqqqq RFH_ECOLI : 97- 102: rlarl Li--AwkL eqqqq YAEJ_ECOLI : 82- 88: yrsqe LnreAa-L arlva YAEJ_PSEPU : 88- 94: nrada LarlAe-L iiaag M 13: 11.0102 32( 16) L-x(0,2)-A-x(1,2)-L Occurences: 32(16) RF1M_KLULA : 188- 192: sgsgv Le-Ai-L nidep RF1M_KLULA : 307- 311: kafai Lr-Ar-L aeker RF1M_SCHPO : 313- 316: vlnsr L--Aa-L naake RF1M_YEAST : 326- 330: kafti Lr-Ar-L aeker RF1_BACSU : 125- 130: geeaa Lf-AgnL yrmys RF1_ECOLI : 126- 131: gdeaa Lf-AgdL frmys RF1_ECOLI : 209- 214: avmpe LpdAe-L pdinp RF1_ECOLI : 353- 356: hqadq L--Aa-L seqe RF1_HAEIN : 20- 24: eryee Le-Al-L gdvsv RF1_HAEIN : 354- 357: yqadq L--Aa-L seqn RF1_MYCLE : 57- 63: sardd LqtAreL aagde RF1_MYCLE : 118- 123: geesa LfaAd-L armyi RF1_MYCLE : 118- 123: geesa Lf-AadL armyi RF1_MYCLE : 275- 279: ralqv La-Ar-L qamae RF1_MYCLE : 275- 279: ralqv L--AarL qamae RF1_PSEAE : 19- 23: dryee Lt-Al-L gdaev RF1_PSEAE : 62- 68: kvqad LegAqaL lkdsd RF1_SALTY : 126- 131: gdeaa Lf-AgdL frmys RF1_SALTY : 209- 214: avmpe LpeAe-L pdinp RF1_SALTY : 352- 356: ehqad Ll-Aa-L seqe RF1_SALTY : 353- 356: hqadl L--Aa-L seqe RF2_BACSU : 278- 282: ramkm Lk-Ak-L yqrri RF2_ECOLI : 110- 113: aleek L--Aq-L efrrm RF2_ECOLI : 361- 365: fieas Lk-Ag-L RF2_HAEIN : 291- 295: qamkq Lk-Ak-L yelel RF2_HAEIN : 361- 365: fieas Lk-Ag-L RF2_SALTY : 110- 113: tleek L--Aq-L efrrm RF2_SALTY : 361- 365: fieas Lk-Ag-L RFH_ECOLI : 93- 96: hankr L--Ar-L liawk RFH_ECOLI : 93- 97: hankr L--ArlL iawkl RFH_ECOLI : 96- 102: krlar LliAwkL eqqqq RFH_ECOLI : 97- 102: rlarl Li-AwkL eqqqq YAEJ_ECOLI : 88- 91: nreaa L--Ar-L vamik YAEJ_PSEPU : 88- 91: nrada L--Ar-L aelii YAEJ_PSEPU : 91- 94: dalar L--Ae-L iiaag N 14: 11.0102 28( 16) K-x(2,3)-A-x(1,3)-L Occurences: 28(16) RF1M_KLULA : 66- 71: dlekq Knf-Ak--L stivd RF1M_KLULA : 300- 307: sqhrn Kak-AfaiL rarla RF1M_KLULA : 302- 307: hrnka Kaf-Ai--L rarla RF1M_SCHPO : 70- 75: dtdla Kri-Ar--L rrvhn RF1M_SCHPO : 302- 307: sqhqn Kek-Af--L vlnsr RF1M_SCHPO : 302- 309: sqhqn Kek-AflvL nsrla RF1M_SCHPO : 320- 327: alnaa KeneAer-L krknq RF1M_YEAST : 59- 64: vkqae Kye-Ae--L kdldk RF1M_YEAST : 83- 88: dvnkq Khy-Ak--L saltd RF1M_YEAST : 319- 326: sqhkn Kak-AftiL rarla RF1_BACSU : 265- 272: sqikn Kek-AmkvL rariy RF1_ECOLI : 265- 271: ersqh Knk-Aka-L svlga RF1_ECOLI : 267- 274: sqhkn Kak-AlsvL garih RF1_HAEIN : 268- 275: sqhkn Kak-AmsvL asriv RF1_MYCLE : 49- 57: vathr KlisArddL qtare RF1_MYCLE : 268- 275: sqlqn Ktr-AlqvL aarlq RF1_PSEAE : 57- 62: frdyr Kvq-Ad--L egaqa RF1_SALTY : 265- 271: ersqh Knk-Aka-L svlga RF1_SALTY : 267- 274: sqhkn Kak-AlsvL garih RF2_BACSU : 112- 117: sepyd Knn-Ai--L elhpg RF2_BACSU : 112- 119: sepyd Knn-AileL hpgag RF2_BACSU : 171- 179: vtlli KghnAygyL kaekg RF2_BACSU : 276- 282: reram KmlkAk--L yqrri RF2_ECOLI : 289- 295: kdqam KqmkAk--L yelem RF2_HAEIN : 284- 291: sqhkn Kdq-AmkqL kakly RF2_HAEIN : 289- 295: kdqam KqlkAk--L yelel RF2_SALTY : 289- 295: kdqam KqmkAk--L yelem RFH_ECOLI : 91- 96: sqhan Krl-Ar--L liawk RFH_ECOLI : 91- 97: sqhan Krl-Arl-L iawkl YAEJ_ECOLI : 32- 39: gqhvn KtstAih-L rfdir YAEJ_PSEPU : 32- 39: gqnvn KvssAvh-L rfdip O 15: 11.0102 28( 16) A-x(3,4)-E-x(2,4)-E Occurences: 28(16) RF1M_KLULA : 309- 318: failr Arla-EkerlE keeke RF1M_SCHPO : 158- 166: ggtea AifanElv--E myfqy RF1M_SCHPO : 186- 195: fisks AvqglEait-E aifsi RF1M_YEAST : 120- 128: dpslr AeaeqEya--E lvpqy RF1M_YEAST : 328- 337: ftilr Arla-EkerlE keeke RF1_BACSU : 63- 72: ladak Amle-EkldaE mrdmv RF1_BACSU : 203- 210: statv Aclp-Eae--E vevdi RF1_BACSU : 203- 212: statv Aclp-EaeevE vdihe RF1_BACSU : 208- 217: aclpe Aeev-EvdihE kdirv RF1_ECOLI : 85- 93: delre AkeksEql--E qqlqv RF1_ECOLI : 204- 213: sactv Avmp-ElpdaE lpdin RF1_HAEIN : 38- 47: qdkfr Aysk-EysqlE evvkc RF1_HAEIN : 79- 89: emkem AqmeiEeskaE ieeve RF1_HAEIN : 205- 212: sactv Avmp-Elp--E sempe RF1_HAEIN : 205- 214: sactv Avmp-ElpesE mpein RF1_MYCLE : 64- 73: tarel Aagd-EsfadE iaele RF1_PSEAE : 37- 44: qdpfr Aysr-Eya--E vepvi RF1_PSEAE : 37- 46: qdpfr Aysr-EyaevE pvilr RF1_SALTY : 85- 93: eelre AkeksEql--E qqlqv RF1_SALTY : 204- 211: sactv Avmp-Elp--E aelpd RF1_SALTY : 204- 213: sactv Avmp-ElpeaE lpdin RF2_BACSU : 19- 26: leske Aria-Eld--E qmadp RF2_BACSU : 292- 300: ieeqq Aeld-Eirg-E qkeig RF2_ECOLI : 55- 64: peraq Algk-ErsslE avvdt RF2_ECOLI : 90- 98: elave Adde-Etfn-E avael RF2_HAEIN : 55- 64: pdkaq Algk-ErvslE qvvnt RF2_SALTY : 55- 64: peraq Algk-ErsslE aivdt RF2_SALTY : 90- 98: elave Adde-Etfn-E avael RFH_ECOLI : 99- 108: arlli Awkl-EqqqqE nsaal YAEJ_ECOLI : 45- 54: rfdir AsslpEyyk-E rllaa YAEJ_ECOLI : 93- 101: larlv Amik-Eltt-E kkarr YAEJ_PSEPU : 45- 54: rfdip AsslpEfyk-E rllal P 16: 11.0102 39( 16) A-x(1,2)-L-x(0,2)-A Occurences: 39(16) RF1M_KLULA : 305- 309: kakaf Ai-Lr-A rlaek RF1M_KLULA : 309- 312: failr Ar-L--A ekerl RF1M_SCHPO : 314- 318: lnsrl Aa-Ln-A akene RF1M_SCHPO : 314- 319: lnsrl Aa-LnaA kenea RF1M_YEAST : 86- 90: kqkhy Ak-Ls-A ltdtf RF1M_YEAST : 328- 331: ftilr Ar-L--A ekerl RF1_BACSU : 123- 127: aggee Aa-Lf-A gnlyr RF1_BACSU : 203- 208: statv Ac-LpeA eevev RF1_ECOLI : 7- 11: kpsiv Ak-Le-A lherh RF1_ECOLI : 21- 26: heevq Al-LgdA qtiad RF1_ECOLI : 124- 128: tggde Aa-Lf-A gdlfr RF1_ECOLI : 350- 354: iqehq AdqL--A alseq RF1_ECOLI : 350- 355: iqehq AdqLa-A lseqe RF1_HAEIN : 351- 355: iteyq AdqL--A alseq RF1_HAEIN : 351- 356: iteyq AdqLa-A lseqn RF1_MYCLE : 12- 17: llieh Ae-LelA ladpe RF1_MYCLE : 38- 41: agrrf Ar-L--A pivat RF1_MYCLE : 60- 64: ddlqt AreL--A agdes RF1_MYCLE : 60- 65: ddlqt AreLa-A gdesf RF1_MYCLE : 120- 124: esalf AadL--A rmyir RF1_MYCLE : 121- 124: salfa Ad-L--A rmyir RF1_MYCLE : 154- 157: ggykd At-L--A ishkg RF1_MYCLE : 276- 281: alqvl AarLq-A maeeq RF1_MYCLE : 277- 281: lqvla Ar-Lq-A maeeq RF1_PSEAE : 21- 26: yeelt Al-LgdA evisd RF1_PSEAE : 60- 65: yrkvq Ad-LegA qallk RF1_SALTY : 7- 11: kpsiv Ak-Le-A lherh RF1_SALTY : 21- 26: heevq Al-LgdA giiad RF1_SALTY : 124- 128: tggde Aa-Lf-A gdlfr RF1_SALTY : 350- 354: vqehq AdlL--A alseq RF1_SALTY : 350- 354: vqehq Ad-Ll-A alseq RF1_SALTY : 350- 355: vqehq AdlLa-A lseqe RF1_SALTY : 350- 355: vqehq Ad-LlaA lseqe RF2_BACSU : 2- 6: m AsrL--A dfrgs RF2_ECOLI : 101- 105: fneav Ae-Ld-A leekl RF2_ECOLI : 359- 363: dqfie As-Lk-A gl RF2_HAEIN : 174- 179: sdgdv Ag-LksA tikvs RF2_HAEIN : 359- 363: drfie As-Lk-A gl RF2_SALTY : 359- 363: dqfie As-Lk-A gl RFH_ECOLI : 70- 74: dsavr AthL--A sgisv RFH_ECOLI : 94- 99: ankrl ArlLi-A wkleq RFH_ECOLI : 94- 99: ankrl Ar-LliA wkleq YAEJ_ECOLI : 86- 89: elnre Aa-L--A rlvam YAEJ_ECOLI : 89- 93: reaal Ar-Lv-A mikel YAEJ_PSEPU : 85- 89: qdqnr AdaL--A rlael YAEJ_PSEPU : 89- 92: radal Ar-L--A eliia YAEJ_PSEPU : 92- 97: alarl Ae-LiiA agkte Q 17: 11.0102 36( 16) L-x(0,1)-A-x(0,2)-L Occurences: 36(16) RF1M_KLULA : 188- 192: sgsgv LeAi-L nidep RF1M_KLULA : 307- 311: kafai LrAr-L aeker RF1M_SCHPO : 142- 145: adsya LpA--L ieirp RF1M_SCHPO : 313- 316: vlnsr LaA--L naake RF1M_SCHPO : 313- 316: vlnsr L-Aa-L naake RF1M_YEAST : 88- 91: khyak LsA--L tdtfi RF1M_YEAST : 326- 330: kafti LrAr-L aeker RF1_BACSU : 125- 130: geeaa LfAgnL yrmys RF1_ECOLI : 9- 12: sivak LeA--L herhe RF1_ECOLI : 126- 131: gdeaa LfAgdL frmys RF1_ECOLI : 353- 356: hqadq LaA--L seqe RF1_ECOLI : 353- 356: hqadq L-Aa-L seqe RF1_HAEIN : 20- 23: eryee LeA--L lgdvs RF1_HAEIN : 20- 24: eryee LeAl-L gdvsv RF1_HAEIN : 354- 357: yqadq LaA--L seqn RF1_HAEIN : 354- 357: yqadq L-Aa-L seqn RF1_MYCLE : 16- 18: haele L-A--L adpel RF1_MYCLE : 118- 123: geesa LfAadL armyi RF1_MYCLE : 275- 279: ralqv LaAr-L qamae RF1_MYCLE : 275- 279: ralqv L-AarL qamae RF1_MYCLE : 338- 341: vldgd LdA--L fdals RF1_PSEAE : 19- 22: dryee LtA--L lgdae RF1_PSEAE : 19- 23: dryee LtAl-L gdaev RF1_SALTY : 9- 12: sivak LeA--L herhe RF1_SALTY : 126- 131: gdeaa LfAgdL frmys RF1_SALTY : 352- 356: ehqad LlAa-L seqe RF1_SALTY : 353- 356: hqadl LaA--L seqe RF1_SALTY : 353- 356: hqadl L-Aa-L seqe RF2_BACSU : 278- 282: ramkm LkAk-L yqrri RF2_ECOLI : 103- 106: eavae LdA--L eekla RF2_ECOLI : 110- 113: aleek L-Aq-L efrrm RF2_ECOLI : 361- 365: fieas LkAg-L RF2_HAEIN : 291- 295: qamkq LkAk-L yelel RF2_HAEIN : 361- 365: fieas LkAg-L RF2_SALTY : 110- 113: tleek L-Aq-L efrrm RF2_SALTY : 361- 365: fieas LkAg-L RFH_ECOLI : 93- 96: hankr L-Ar-L liawk RFH_ECOLI : 93- 97: hankr L-ArlL iawkl RFH_ECOLI : 97- 102: rlarl LiAwkL eqqqq YAEJ_ECOLI : 88- 91: nreaa L-Ar-L vamik YAEJ_PSEPU : 56- 59: fyker LlA--L rdsri YAEJ_PSEPU : 57- 59: ykerl L-A--L rdsri YAEJ_PSEPU : 88- 91: nrada L-Ar-L aelii YAEJ_PSEPU : 91- 94: dalar L-Ae-L iiaag R 18: 11.0102 47( 16) A-x(1,3)-L-x(2,3)-L Occurences: 47(16) RF1M_KLULA : 110- 116: aeadi Aal-Lpd-L nktgd RF1M_KLULA : 110- 116: aeadi Aa--LlpdL nktgd RF1M_KLULA : 111- 116: eadia Al--Lpd-L nktgd RF1M_KLULA : 303- 311: rnkak AfaiLrarL aeker RF1M_KLULA : 305- 311: kakaf Ai--LrarL aeker RF1M_SCHPO : 305- 313: qnkek AflvLnsrL aalna RF1M_YEAST : 62- 67: aekye Ae--Lkd-L dkdls RF1M_YEAST : 86- 91: kqkhy Ak--Lsa-L tdtfi RF1M_YEAST : 322- 330: knkak AftiLrarL aeker RF1_BACSU : 61- 69: eqlad AkamLeekL daemr RF1_BACSU : 63- 69: ladak Am--LeekL daemr RF1_BACSU : 241- 247: nttms Avr-Lth-L ptgvv RF1_ECOLI : 7- 12: kpsiv Ak--Lea-L herhe RF1_ECOLI : 268- 274: qhknk Aka-Lsv-L garih RF1_ECOLI : 350- 356: iqehq Adq-Laa-L seqe RF1_HAEIN : 8- 13: kdsii Ak--Les-L kerye RF1_HAEIN : 351- 357: iteyq Adq-Laa-L seqn RF1_MYCLE : 12- 18: llieh Ae--LelaL adpel RF1_MYCLE : 82- 88: lesri Ae--LttqL tdmla RF1_MYCLE : 271- 279: qnktr AlqvLaarL qamae RF1_MYCLE : 327- 334: rigyk Ahn-LdqvL dgdld RF1_PSEAE : 3- 9: mk Asl-Lkk-L dvlsd RF1_PSEAE : 3- 9: mk As--LlkkL dvlsd RF1_SALTY : 7- 12: kpsiv Ak--Lea-L herhe RF1_SALTY : 268- 274: qhknk Aka-Lsv-L garih RF1_SALTY : 350- 356: vqehq Adl-Laa-L seqe RF1_SALTY : 350- 356: vqehq Ad--LlaaL seqe RF2_BACSU : 274- 282: knrer AmkmLkakL yqrri RF2_ECOLI : 99- 106: etfne AvaeLda-L eekla RF2_ECOLI : 101- 106: fneav Ae--Lda-L eekla RF2_ECOLI : 293- 298: mkqmk Ak--Lye-L emqkk RF2_ECOLI : 347- 353: trntq Av--LdgsL dqfie RF2_ECOLI : 359- 365: dqfie As--LkagL RF2_HAEIN : 99- 106: dtfne AvaeLde-L eqqle RF2_HAEIN : 101- 106: fneav Ae--Lde-L eqqle RF2_HAEIN : 287- 295: knkdq AmkqLkakL yelel RF2_HAEIN : 293- 298: mkqlk Ak--Lye-L elqkk RF2_HAEIN : 347- 353: nrntq Av--LdgdL drfie RF2_HAEIN : 359- 365: drfie As--LkagL RF2_SALTY : 99- 106: etfne AvaeLnt-L eekla RF2_SALTY : 101- 106: fneav Ae--Lnt-L eekla RF2_SALTY : 145- 153: eaqdw AsmlLrmyL rwaea RF2_SALTY : 293- 298: mkqmk Ak--Lye-L emqkk RF2_SALTY : 347- 353: trntq Av--LdgsL dqfie RF2_SALTY : 359- 365: dqfie As--LkagL RFH_ECOLI : 89- 96: ersqh AnkrLar-L liawk RFH_ECOLI : 89- 97: ersqh AnkrLarlL iawkl YAEJ_ECOLI : 86- 91: elnre Aa--Lar-L vamik YAEJ_PSEPU : 85- 91: qdqnr Ada-Lar-L aelii YAEJ_PSEPU : 87- 94: qnrad AlarLae-L iiaag YAEJ_PSEPU : 89- 94: radal Ar--Lae-L iiaag S 19: 11.0102 32( 16) A-x(1,3)-L-x(1,2)-L Occurences: 32(16) RF1M_KLULA : 110- 116: aeadi Aal-LpdL nktgd RF1M_KLULA : 111- 116: eadia Al--LpdL nktgd RF1M_SCHPO : 205- 211: iegeg AyghLm-L eggvh RF1M_SCHPO : 305- 309: qnkek Af--Lv-L nsrla RF1M_YEAST : 62- 67: aekye Ae--LkdL dkdls RF1M_YEAST : 86- 91: kqkhy Ak--LsaL tdtfi RF1_BACSU : 241- 247: nttms Avr-LthL ptgvv RF1_ECOLI : 7- 12: kpsiv Ak--LeaL herhe RF1_ECOLI : 268- 274: qhknk Aka-LsvL garih RF1_ECOLI : 350- 356: iqehq Adq-LaaL seqe RF1_HAEIN : 8- 13: kdsii Ak--LesL kerye RF1_HAEIN : 351- 357: iteyq Adq-LaaL seqn RF1_MYCLE : 12- 16: llieh Ae--Le-L aladp RF1_MYCLE : 12- 18: llieh AeleLa-L adpel RF1_PSEAE : 3- 9: mk Asl-LkkL dvlsd RF1_SALTY : 7- 12: kpsiv Ak--LeaL herhe RF1_SALTY : 268- 274: qhknk Aka-LsvL garih RF1_SALTY : 350- 356: vqehq Adl-LaaL seqe RF2_BACSU : 115- 119: ydknn Ai--Le-L hpgag RF2_ECOLI : 99- 106: etfne AvaeLdaL eekla RF2_ECOLI : 101- 106: fneav Ae--LdaL eekla RF2_ECOLI : 293- 298: mkqmk Ak--LyeL emqkk RF2_HAEIN : 99- 106: dtfne AvaeLdeL eqqle RF2_HAEIN : 101- 106: fneav Ae--LdeL eqqle RF2_HAEIN : 293- 298: mkqlk Ak--LyeL elqkk RF2_SALTY : 99- 106: etfne AvaeLntL eekla RF2_SALTY : 101- 106: fneav Ae--LntL eekla RF2_SALTY : 293- 298: mkqmk Ak--LyeL emqkk RFH_ECOLI : 89- 96: ersqh AnkrLarL liawk YAEJ_ECOLI : 86- 91: elnre Aa--LarL vamik YAEJ_PSEPU : 85- 91: qdqnr Ada-LarL aelii YAEJ_PSEPU : 87- 94: qnrad AlarLaeL iiaag YAEJ_PSEPU : 89- 94: radal Ar--LaeL iiaag T 20: 10.5102 28( 16) R-x(1,3)-A-x(2,4)-Q Occurences: 28(16) RF1M_KLULA : 324- 330: keeke Rn--Arkd-Q vsttd RF1M_SCHPO : 263- 270: kievm RsrgAgg--Q hvnrt RF1M_SCHPO : 265- 270: evmrs Rg--Agg--Q hvnrt RF1M_YEAST : 343- 349: keeke Rk--Arks-Q vsstn RF1_BACSU : 52- 57: vyrqy Rd--Ase--Q ladak RF1_BACSU : 136- 141: yrmys Ry--Ael--Q gwkte RF1_ECOLI : 186- 193: ghrvq Rvp-Ates-Q griht RF1_ECOLI : 228- 235: ridtf RssgAgg--Q hvntt RF1_HAEIN : 229- 236: ridty RssgAgg--Q hvntt RF1_HAEIN : 278- 287: svlas RivqAeqerQ aaeqt RF1_HAEIN : 286- 291: qaeqe Rq--Aae--Q tdmrr RF1_MYCLE : 80- 87: aeles Ri--AelttQ ltdml RF1_MYCLE : 278- 286: qvlaa Rlq-AmaeeQ alana RF1_PSEAE : 88- 96: evaea RgrlAprr-Q RF1_PSEAE : 90- 96: aearg Rl--Aprr-Q RF1_SALTY : 186- 193: ghrvq Rvp-Ates-Q griht RF1_SALTY : 228- 235: ridtf RssgAgg--Q hvntt RF2_BACSU : 20- 27: eskea Ri--AeldeQ madpe RF2_BACSU : 232- 239: kvdty RasgAgg--Q hvntt RF2_ECOLI : 245- 252: ridvy RtsgAgg--Q hvnrt RF2_HAEIN : 245- 252: ridvy RasgAgg--Q hvnkt RF2_SALTY : 245- 252: ridvy RasgAgg--Q hvnrt RFH_ECOLI : 34- 40: flgig Rft-Ade--Q eqsda RFH_ECOLI : 34- 42: flgig Rft-AdeqeQ sdair RFH_ECOLI : 95- 104: nkrla RlliAwkleQ qqqen YAEJ_ECOLI : 21- 28: eitai RaqgAgg--Q hvnkt YAEJ_ECOLI : 117- 124: raske Rrl-Aska-Q kssvk YAEJ_ECOLI : 118- 124: asker Rl--Aska-Q kssvk YAEJ_PSEPU : 21- 28: eltyi RaqgAgg--Q nvnkv Number of patterns evaluated by Pratt:836 Total running time: 1 seconds