------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file RENAL_DIPEPTIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RENAL_DIPEPTIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MDP1_HUMAN 411 MDP1_MOUSE 410 MDP1_PIG 409 MDP1_RABIT 410 MDP1_RAT 410 MDP1_SHEEP 410 YPQQ_KLEPN 271 YPQR_ACICA 315 Pratt run started at Thu Feb 6 21:05:16 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 8( 8) P-x(0,1)-V-x(2,3)-H-S-x(5)-C-x(3)-R-N-x(2)-D-x(2)-L 2: 32.3604 8( 8) V-x(1,3)-H-S-x(5)-C-x(3)-R-N-x(2)-D-x(2)-L 3: 31.3604 8( 8) H-S-x(1,3)-A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 4: 31.3604 8( 8) H-x(0,2)-S-x-A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 5: 31.3604 8( 8) A-x(5)-H-x(0,2)-A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 6: 28.1904 8( 8) S-x(3)-A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 7: 27.1904 9( 8) H-x(0,2)-A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 8: 24.0203 8( 8) S-x(4)-L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L 9: 24.0203 9( 8) A-x(1,3)-C-x(3)-R-N-x(2)-D-x(2)-L 10: 23.5203 8( 8) P-x(2)-L-x(0,1)-D-V-x(5)-L-x(3,5)-L 11: 23.0203 8( 8) L-x-D-V-x(5)-L-x(3,5)-L-x(0,2)-R 12: 20.8503 8( 8) C-x(3)-R-N-x(2)-D-x(2)-L 13: 20.3503 8( 8) I-x(4,5)-G-x-V-G-x(2)-F 14: 20.3503 8( 8) D-x(1,2)-L-x(2)-I-x(4)-G-x(3)-V 15: 19.8503 8( 8) L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L 16: 19.8503 8( 8) P-D-x(1,2)-L-x(1,2)-V-x(5)-L 17: 19.8503 8( 8) G-x(4)-D-x(4)-V-x(2,4)-L-x(2)-L 18: 19.8503 9( 8) S-x(1,3)-V-x-V-N-F 19: 19.8503 8( 8) D-x(1,2)-L-x(1,2)-I-x(4)-G-x(3)-V 20: 19.8503 8( 8) L-x(3)-I-x(3)-H-x(3,4)-A-x(3,4)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 113.6174 8( 8) P-x(0,1)-V-x(2,3)-H-S-[NS]-[AS]-[FHY]-[AST]-[LV]-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS] B 2: 112.0494 8( 8) V-x(1,3)-H-S-[NS]-[AS]-[FHY]-[AST]-[LV]-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT] C 3: 103.8752 9( 8) A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] D 4: 102.0842 8( 8) S-x-[AS]-x-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] E 5: 102.0751 8( 8) H-S-x(1,3)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] F 6: 102.0751 8( 8) H-x(0,2)-S-x-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] G 7: 100.7051 8( 8) C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] H 8: 100.5797 9( 8) H-x(0,2)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL] I 9: 100.0167 8( 8) A-[PT]-x(3)-[AS]-H-x(0,2)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS] J 10: 84.1100 8( 8) D-x(1,2)-L-x(2)-I-[KR]-x-[SV]-x-G-x(2)-[AG]-V-x-[FL]-[DG]-[GNV]-[AD]-[FY]-x(2)-[ASV]-[DPST]-x(4)-[AGS]-x-[ET]-[DPS]-[ILV]-[DST]-x(2)-[LPV]-[DER]-x-[ILV]-[ADE]-x-L-[ILM]-[DNR] K 11: 83.6100 8( 8) D-x(1,2)-L-x(1,2)-I-[KR]-x-[SV]-x-G-x(2)-[AG]-V-x-[FL]-[DG]-[GNV]-[AD]-[FY]-x(2)-[ASV]-[DPST]-x(4)-[AGS]-x-[ET]-[DPS]-[ILV]-[DST]-x(2)-[LPV]-[DER]-x-[ILV]-[ADE]-x-L-[ILM]-[DNR] L 12: 62.3034 8( 8) I-x(4,5)-G-[FMV]-V-G-[AGV]-[NQ]-F-x-[NSV]-[AV]-[FY]-x(2)-[ACS]-D-[GT]-[QR]-[NR]-x-[ADS]-[ADST]-[TV] M 13: 55.9479 9( 8) S-x(1,3)-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] N 14: 31.0429 8( 8) G-x(3)-[AIP]-D-[EST]-x-[GIL]-[DG]-V-x(2,4)-L-x(2)-L O 15: 29.8741 8( 8) S-x(2)-[DGV]-x-L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L-x(4)-[NS] P 16: 28.2406 8( 8) L-x(3)-I-[DV]-[ALV]-[AST]-H-x(3,4)-A-x(3,4)-A Q 17: 27.5205 8( 8) L-x-D-V-x(5)-L-x(3,5)-L-x(0,2)-R-x(4)-[ADEGT]-x-[GLV] R 18: 25.7398 8( 8) P-x(2)-L-x(0,1)-D-V-x(5)-L-x(3,5)-L-x(2)-[NQRS] S 19: 23.0716 8( 8) L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L-x(4)-[NS] T 20: 19.8503 8( 8) P-D-x(1,2)-L-x(1,2)-V-x(5)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 113.6174 8( 8) P-x(0,1)-V-x(2,3)-H-S-[NS]-[AS]-[FHY]-[AST]-[LV]-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS] Occurences: 8(8) MDP1_HUMAN : 230- 276: qlsra P-VifsHSSAYSVCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtN kanls MDP1_MOUSE : 230- 276: qisra P-VifsHSSAYSLCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsD satlp MDP1_PIG : 230- 276: klsqa P-VifsHSSAYSLCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsA kanls MDP1_RABIT : 230- 276: qlsta P-VifsHSSAFTVCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaS eatls MDP1_RAT : 230- 276: qlska P-VifsHSSAYSVCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsD satls MDP1_SHEEP : 230- 276: qlska P-VifsHSSAYSLChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkA eanls YPQQ_KLEPN : 142- 188: hhats PlVat-HSNAHALCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdG rrdsd YPQR_ACICA : 221- 267: dilqq PiVat-HSNSHALCpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdG qrnad B 2: 112.0494 8( 8) V-x(1,3)-H-S-[NS]-[AS]-[FHY]-[AST]-[LV]-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT] Occurences: 8(8) MDP1_HUMAN : 231- 279: lsrap VifsHSSAYSVCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaN lsqva MDP1_MOUSE : 231- 279: israp VifsHSSAYSLCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaT lpqva MDP1_PIG : 231- 279: lsqap VifsHSSAYSLCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaN lsqva MDP1_RABIT : 231- 279: lstap VifsHSSAFTVCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaT lsqva MDP1_RAT : 231- 279: lskap VifsHSSAYSVCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaT lsqva MDP1_SHEEP : 231- 279: lskap VifsHSSAYSLChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaN lsqva YPQQ_KLEPN : 144- 191: atspl Vat-HSNAHALCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrD sdtpl YPQR_ACICA : 223- 270: lqqpi Vat-HSNSHALCpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrN adtsi C 3: 103.8752 9( 8) A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] Occurences: 9(8) MDP1_HUMAN : 238- 287: fshss AysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQvADhL dhike MDP1_MOUSE : 238- 287: fshss AyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQvADhL dhikk MDP1_PIG : 238- 287: fshss AyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQvADhL dhikk MDP1_RABIT : 238- 287: fshss AftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQvADhL dyikn MDP1_RAT : 238- 287: fshss AysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQvADhL dhikk MDP1_SHEEP : 238- 287: fshss AyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQvADhL dyikk YPQQ_KLEPN : 150- 199: athsn AhalCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDTpLTtI vrhid YPQQ_KLEPN : 152- 199: hsnah Al--CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDTpLTtI vrhid YPQR_ACICA : 231- 278: hsnsh Al--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDTsIDvI lehle D 4: 102.0842 8( 8) S-x-[AS]-x-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] Occurences: 8(8) MDP1_HUMAN : 234- 282: apvif ShSsAysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQ vadhl MDP1_MOUSE : 234- 282: apvif ShSsAyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQ vadhl MDP1_PIG : 234- 282: apvif ShSsAyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQ vadhl MDP1_RABIT : 234- 282: apvif ShSsAftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQ vadhl MDP1_RAT : 234- 282: apvif ShSsAysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQ vadhl MDP1_SHEEP : 234- 282: apvif ShSsAyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQ vadhl YPQQ_KLEPN : 148- 194: lvath SnAhAl--CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDT pltti YPQR_ACICA : 227- 273: ivath SnShAl--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDT sidvi E 5: 102.0751 8( 8) H-S-x(1,3)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] Occurences: 8(8) MDP1_HUMAN : 235- 282: pvifs HSs--AysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQ vadhl MDP1_MOUSE : 235- 282: pvifs HSs--AyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQ vadhl MDP1_PIG : 235- 282: pvifs HSs--AyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQ vadhl MDP1_RABIT : 235- 282: pvifs HSs--AftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQ vadhl MDP1_RAT : 235- 282: pvifs HSs--AysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQ vadhl MDP1_SHEEP : 235- 282: pvifs HSs--AyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQ vadhl YPQQ_KLEPN : 147- 194: plvat HSnahAl--CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDT pltti YPQQ_KLEPN : 147- 194: plvat HSn--AhalCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDT pltti YPQR_ACICA : 226- 273: pivat HSnshAl--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDT sidvi F 6: 102.0751 8( 8) H-x(0,2)-S-x-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT] Occurences: 8(8) MDP1_HUMAN : 235- 282: pvifs H--SsAysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQ vadhl MDP1_MOUSE : 235- 282: pvifs H--SsAyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQ vadhl MDP1_PIG : 235- 282: pvifs H--SsAyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQ vadhl MDP1_RABIT : 235- 282: pvifs H--SsAftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQ vadhl MDP1_RAT : 235- 282: pvifs H--SsAysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQ vadhl MDP1_SHEEP : 235- 282: pvifs H--SsAyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQ vadhl YPQQ_KLEPN : 147- 194: plvat H--SnAhalCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDT pltti YPQR_ACICA : 226- 273: pivat HsnShAl--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDT sidvi G 7: 100.7051 8( 8) C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] Occurences: 8(8) MDP1_HUMAN : 242- 287: saysv CasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQvADhL dhike MDP1_MOUSE : 242- 287: saysl CphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQvADhL dhikk MDP1_PIG : 242- 287: saysl CphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQvADhL dhikk MDP1_RABIT : 242- 287: saftv CahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQvADhL dyikn MDP1_RAT : 242- 287: saysv CphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQvADhL dhikk MDP1_SHEEP : 242- 287: saysl ChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQvADhL dyikk YPQQ_KLEPN : 154- 199: nahal CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDTpLTtI vrhid YPQR_ACICA : 233- 278: nshal CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDTsIDvI lehle H 8: 100.5797 9( 8) H-x(0,2)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL] Occurences: 9(8) MDP1_HUMAN : 235- 284: pvifs HssAysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtNkaNlSQvA dhldh MDP1_MOUSE : 235- 284: pvifs HssAyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsDsaTlPQvA dhldh MDP1_PIG : 235- 284: pvifs HssAyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsAkaNlSQvA dhldh MDP1_RABIT : 235- 284: pvifs HssAftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaSeaTlSQvA dhldy MDP1_RAT : 235- 284: pvifs HssAysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsDsaTlSQvA dhldh MDP1_SHEEP : 235- 284: pvifs HssAyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkAeaNlSQvA dhldy YPQQ_KLEPN : 147- 196: plvat HsnAhalCpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDTpL ttivr YPQQ_KLEPN : 151- 196: thsna H--Al--CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdGrrDsDTpL ttivr YPQR_ACICA : 230- 275: thsns H--Al--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdGqrNaDTsI dvile I 9: 100.0167 8( 8) A-[PT]-x(3)-[AS]-H-x(0,2)-A-x(1,3)-C-x(3)-R-N-[LV]-[PT]-D-x(2)-L-x-[AL]-[IV]-[KR]-[DENQS]-[ST]-x-[GS]-[LMV]-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS] Occurences: 8(8) MDP1_HUMAN : 229- 276: lqlsr APvifSHssAysvCasrRNVPDdvLrLVKQTdSLVmVNFyNNYISCtN kanls MDP1_MOUSE : 229- 276: lqisr APvifSHssAyslCphrRNVPDdvLqLVKNTsSLVmVNFfSNFVSCsD satlp MDP1_PIG : 229- 276: lklsq APvifSHssAyslCphrRNVPDdvLqLVKETgSLVmVNFyNDYVSCsA kanls MDP1_RABIT : 229- 276: lqlst APvifSHssAftvCahkRNVPDdvLqLVKETgSLVmVNFyNDYVSCaS eatls MDP1_RAT : 229- 276: lqlsk APvifSHssAysvCphrRNVPDdvLqLVKSTnSLVmVNFyNQFVSCsD satls MDP1_SHEEP : 229- 276: lqlsk APvifSHssAyslChhrRNVPDhvLqLVKQTgSLVmVNFyNDYVSCkA eanls YPQQ_KLEPN : 145- 188: tsplv AThsnAH--Al--CpqpRNLTDqqLrAIRDSgGVVgVNFgNAFLRAdG rrdsd YPQR_ACICA : 224- 267: qqpiv AThsnSH--Al--CpqaRNLTDpqLkAIRESkGMVgVNFdVAFLRSdG qrnad J 10: 84.1100 8( 8) D-x(1,2)-L-x(2)-I-[KR]-x-[SV]-x-G-x(2)-[AG]-V-x-[FL]-[DG]-[GNV]-[AD]-[FY]-x(2)-[ASV]-[DPST]-x(4)-[AGS]-x-[ET]-[DPS]-[ILV]-[DST]-x(2)-[LPV]-[DER]-x-[ILV]-[ADE]-x-L-[ILM]-[DNR] Occurences: 8(8) MDP1_HUMAN : 285- 330: lsqva Dh-LdhIKeVaGarAVgFGGDFdgVPrvpeGlEDVSkyPDlIAeLLR rnwte MDP1_MOUSE : 285- 330: lpqva Dh-LdhIKkVaGagAVgLGGDYdgVTmlpvGlEDVSkyPDlIAeLLR rnwte MDP1_PIG : 285- 330: lsqva Dh-LdhIKkVaGaaAVgFGGDYdgVSrvpsGlEDVSkyPDlVAeLLR rqwte MDP1_RABIT : 285- 330: lsqva Dh-LdyIKnVaGaaAVrFGGDFdgVTrlpvGlEDVSkyPDlVAeLLR rgwte MDP1_RAT : 285- 330: lsqva Dh-LdhIKkVaGagAVgLGGDYdgVTnlpvGlEDVSkyPDlIAeLLR rnwte MDP1_SHEEP : 285- 330: lsqva Dh-LdyIKkVaGagAVgFGGDYdgVSrlpsGlEDVSkyPDlVAeLLR rqwte YPQQ_KLEPN : 162- 208: prnlt DqqLraIRdSgGvvGVnFGNAFlrADgrrdSdTPLTtiVRhIDyLIN imged YPQR_ACICA : 241- 287: arnlt DpqLkaIReSkGmvGVnFDVAFlrSDgqrnAdTSIDviLEhLEyLMD rvapl K 11: 83.6100 8( 8) D-x(1,2)-L-x(1,2)-I-[KR]-x-[SV]-x-G-x(2)-[AG]-V-x-[FL]-[DG]-[GNV]-[AD]-[FY]-x(2)-[ASV]-[DPST]-x(4)-[AGS]-x-[ET]-[DPS]-[ILV]-[DST]-x(2)-[LPV]-[DER]-x-[ILV]-[ADE]-x-L-[ILM]-[DNR] Occurences: 8(8) MDP1_HUMAN : 285- 330: lsqva Dh-LdhIKeVaGarAVgFGGDFdgVPrvpeGlEDVSkyPDlIAeLLR rnwte MDP1_MOUSE : 285- 330: lpqva Dh-LdhIKkVaGagAVgLGGDYdgVTmlpvGlEDVSkyPDlIAeLLR rnwte MDP1_PIG : 285- 330: lsqva Dh-LdhIKkVaGaaAVgFGGDYdgVSrvpsGlEDVSkyPDlVAeLLR rqwte MDP1_RABIT : 285- 330: lsqva Dh-LdyIKnVaGaaAVrFGGDFdgVTrlpvGlEDVSkyPDlVAeLLR rgwte MDP1_RAT : 285- 330: lsqva Dh-LdhIKkVaGagAVgLGGDYdgVTnlpvGlEDVSkyPDlIAeLLR rnwte MDP1_SHEEP : 285- 330: lsqva Dh-LdyIKkVaGagAVgFGGDYdgVSrlpsGlEDVSkyPDlVAeLLR rqwte YPQQ_KLEPN : 162- 208: prnlt DqqLraIRdSgGvvGVnFGNAFlrADgrrdSdTPLTtiVRhIDyLIN imged YPQR_ACICA : 241- 287: arnlt DpqLkaIReSkGmvGVnFDVAFlrSDgqrnAdTSIDviLEhLEyLMD rvapl L 12: 62.3034 8( 8) I-x(4,5)-G-[FMV]-V-G-[AGV]-[NQ]-F-x-[NSV]-[AV]-[FY]-x(2)-[ACS]-D-[GT]-[QR]-[NR]-x-[ADS]-[ADST]-[TV] Occurences: 8(8) MDP1_HUMAN : 68- 95: gthtn IpklraGFVGGQFwSVYtpCDTQNkDAV rrtle MDP1_MOUSE : 68- 95: qthtn IpklkaGFVGGQFwSAYmpCDTQNkDAV krile MDP1_PIG : 68- 95: hthtn IpklkaGFVGGQFwSAYvpCDTQNrDAV krtle MDP1_RABIT : 68- 95: dthtn IpklraGFVGGQFwSAYtpCDTQNkDTV rrtle MDP1_RAT : 68- 95: ethtn IpklraGFVGGQFwSAYmpCDTQNkDAV krile MDP1_SHEEP : 68- 95: sthtn IpklkaGFVGAQFwSAYtpCDTQNkDSV krtve YPQQ_KLEPN : 168- 194: qqlra Irdsg-GVVGVNFgNAFlrADGRRdSDT pltti YPQR_ACICA : 247- 273: pqlka Iresk-GMVGVNFdVAFlrSDGQRnADT sidvi M 13: 55.9479 9( 8) S-x(1,3)-V-x-V-N-F-x-[NSV]-[ADNQ]-[FY]-[ILV]-[RS]-[ACS]-x-[ADGNS]-x(2)-[DNT]-x-[DPS]-[QT]-x-[AIL]-[DT]-x-[IL] Occurences: 9(8) MDP1_HUMAN : 261- 287: vkqtd Sl--VmVNFyNNYISCtNkaNlSQvADhL dhike MDP1_MOUSE : 260- 287: lvknt Ssl-VmVNFfSNFVSCsDsaTlPQvADhL dhikk MDP1_MOUSE : 261- 287: vknts Sl--VmVNFfSNFVSCsDsaTlPQvADhL dhikk MDP1_PIG : 261- 287: vketg Sl--VmVNFyNDYVSCsAkaNlSQvADhL dhikk MDP1_RABIT : 261- 287: vketg Sl--VmVNFyNDYVSCaSeaTlSQvADhL dyikn MDP1_RAT : 261- 287: vkstn Sl--VmVNFyNQFVSCsDsaTlSQvADhL dhikk MDP1_SHEEP : 261- 287: vkqtg Sl--VmVNFyNDYVSCkAeaNlSQvADhL dyikk YPQQ_KLEPN : 171- 199: raird SggvVgVNFgNAFLRAdGrrDsDTpLTtI vrhid YPQR_ACICA : 250- 278: kaire SkgmVgVNFdVAFLRSdGqrNaDTsIDvI lehle N 14: 31.0429 8( 8) G-x(3)-[AIP]-D-[EST]-x-[GIL]-[DG]-V-x(2,4)-L-x(2)-L Occurences: 8(8) MDP1_HUMAN : 142- 159: ligve GghsIDSsLGVlra-LyqL gmryl MDP1_MOUSE : 142- 159: ligve GghlIDSsLGVlrt-LyhL gmryl MDP1_PIG : 142- 159: lvgve GghsIDSsLGVlra-LyhL gmrym MDP1_RABIT : 142- 159: ligve GghsIDSsLGVlra-LyrL gmryl MDP1_RAT : 142- 159: ligve GghlIDSsLGVlrt-LyhL gmryl MDP1_SHEEP : 142- 159: lvgve GghsIDSsLGVlra-LyhL gmryl YPQQ_KLEPN : 223- 239: gsdfd GitlPDElGDVag--LprL intlr YPQR_ACICA : 267- 285: flrsd GqrnADTsIDVilehLeyL mdrva O 15: 29.8741 8( 8) S-x(2)-[DGV]-x-L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L-x(4)-[NS] Occurences: 8(8) MDP1_HUMAN : 148- 171: ghsid SslGvLraLyqLgmRyltLthscN tpwad MDP1_MOUSE : 148- 171: ghlid SslGvLrtLyhLgmRyltLthncN tpwad MDP1_PIG : 148- 171: ghsid SslGvLraLyhLgmRymtLthscN tpwad MDP1_RABIT : 148- 171: ghsid SslGvLraLyrLgmRyltLthncN tpwad MDP1_RAT : 148- 171: ghlid SslGvLrtLyhLgmRyltLthncN tpwad MDP1_SHEEP : 148- 171: ghsid SslGvLraLyhLgmRyltLthscN tpwad YPQQ_KLEPN : 246- 267: ntlra SgyDqLv-LdkLlwRnw-LrvlkN vwqq YPQR_ACICA : 274- 297: rnadt SidViLehLeyLmdRvapLlhprS klrkg P 16: 28.2406 8( 8) L-x(3)-I-[DV]-[ALV]-[AST]-H-x(3,4)-A-x(3,4)-A Occurences: 8(8) MDP1_HUMAN : 206- 222: kelnr LgvlIDLAHvsv-Atmk-A tlqls MDP1_MOUSE : 206- 223: nemtr LgvmIDLSHvsv-AtmkdA lqisr MDP1_PIG : 206- 222: kemnr LgvmIDLAHvsv-Atmr-A alkls MDP1_PIG : 206- 223: kemnr LgvmIDLAHvsv-AtmraA lklsq MDP1_RABIT : 206- 222: remnr LgvmIDLAHvsv-Atmk-A alqls MDP1_RABIT : 206- 223: remnr LgvmIDLAHvsv-AtmkaA lqlst MDP1_RAT : 206- 223: nemnr LgvmIDLSHvsv-AtmkdA lqlsk MDP1_SHEEP : 206- 222: kemnr LgiiIDLAHvsv-Atme-A alqls MDP1_SHEEP : 206- 223: kemnr LgiiIDLAHvsv-AtmeaA lqlsk YPQQ_KLEPN : 118- 136: kqvna LkmqIDVSHmnekAfwdtA hhats YPQR_ACICA : 218- 236: ntvdi LqqpIVATHsnshAlcpqA rnltd Q 17: 27.5205 8( 8) L-x-D-V-x(5)-L-x(3,5)-L-x(0,2)-R-x(4)-[ADEGT]-x-[GLV] Occurences: 8(8) MDP1_HUMAN : 315- 338: rvpeg LeDVskypdLiael-Lr-RnwteAeV kgala MDP1_HUMAN : 315- 338: rvpeg LeDVskypdLiae--LlrRnwteAeV kgala MDP1_MOUSE : 315- 338: mlpvg LeDVskypdLiael-Lr-RnwteTeV rglla MDP1_MOUSE : 315- 338: mlpvg LeDVskypdLiae--LlrRnwteTeV rglla MDP1_PIG : 315- 338: rvpsg LeDVskypdLvael-Lr-RqwteAeV rgala MDP1_PIG : 315- 338: rvpsg LeDVskypdLvae--LlrRqwteAeV rgala MDP1_RABIT : 315- 338: rlpvg LeDVskypdLvael-Lr-RgwteAeV rgala MDP1_RABIT : 315- 338: rlpvg LeDVskypdLvae--LlrRgwteAeV rgala MDP1_RAT : 315- 338: nlpvg LeDVskypdLiael-Lr-RnwteTeV rglla MDP1_RAT : 315- 338: nlpvg LeDVskypdLiae--LlrRnwteTeV rglla MDP1_SHEEP : 315- 338: rlpsg LeDVskypdLvael-Lr-RqwteEeV rgala MDP1_SHEEP : 315- 338: rlpsg LeDVskypdLvae--LlrRqwteEeV rgala YPQQ_KLEPN : 230- 251: tlpde LgDVaglprLint--L--RasgyDqL vldkl YPQR_ACICA : 143- 168: qqnpd LlDVfyergLrsigpLwnRpsrfGhG lnakf R 18: 25.7398 8( 8) P-x(2)-L-x(0,1)-D-V-x(5)-L-x(3,5)-L-x(2)-[NQRS] Occurences: 8(8) MDP1_HUMAN : 312- 331: gvprv PegLeDVskypdLiae--LlrR nwtea MDP1_HUMAN : 312- 332: gvprv PegLeDVskypdLiael-LrrN wteae MDP1_MOUSE : 312- 331: gvtml PvgLeDVskypdLiae--LlrR nwtet MDP1_MOUSE : 312- 332: gvtml PvgLeDVskypdLiael-LrrN wtete MDP1_PIG : 312- 331: gvsrv PsgLeDVskypdLvae--LlrR qwtea MDP1_PIG : 312- 332: gvsrv PsgLeDVskypdLvael-LrrQ wteae MDP1_RABIT : 312- 331: gvtrl PvgLeDVskypdLvae--LlrR gwtea MDP1_RAT : 312- 331: gvtnl PvgLeDVskypdLiae--LlrR nwtet MDP1_RAT : 312- 332: gvtnl PvgLeDVskypdLiael-LrrN wtete MDP1_SHEEP : 312- 331: gvsrl PsgLeDVskypdLvae--LlrR qwtee MDP1_SHEEP : 312- 332: gvsrl PsgLeDVskypdLvael-LrrQ wteee YPQQ_KLEPN : 227- 246: dgitl PdeLgDVaglprLint--LraS gydql YPQR_ACICA : 141- 161: alqqn PdlL-DVfyergLrsigpLwnR psrfg S 19: 23.0716 8( 8) L-x(1,2)-L-x(2)-L-x(2)-R-x(2,3)-L-x(4)-[NS] Occurences: 8(8) MDP1_HUMAN : 153- 171: sslgv LraLyqLgmRyltLthscN tpwad MDP1_MOUSE : 153- 171: sslgv LrtLyhLgmRyltLthncN tpwad MDP1_PIG : 153- 171: sslgv LraLyhLgmRymtLthscN tpwad MDP1_RABIT : 153- 171: sslgv LraLyrLgmRyltLthncN tpwad MDP1_RAT : 153- 171: sslgv LrtLyhLgmRyltLthncN tpwad MDP1_SHEEP : 153- 171: sslgv LraLyhLgmRyltLthscN tpwad YPQQ_KLEPN : 251- 267: sgydq Lv-LdkLlwRnw-LrvlkN vwqq YPQR_ACICA : 279- 297: sidvi LehLeyLmdRvapLlhprS klrkg T 20: 19.8503 8( 8) P-D-x(1,2)-L-x(1,2)-V-x(5)-L Occurences: 8(8) MDP1_HUMAN : 249- 262: srrnv PDdvLrlVkqtdsL vmvnf MDP1_MOUSE : 249- 262: hrrnv PDdvLqlVkntssL vmvnf MDP1_PIG : 249- 262: hrrnv PDdvLqlVketgsL vmvnf MDP1_RABIT : 249- 262: hkrnv PDdvLqlVketgsL vmvnf MDP1_RAT : 249- 262: hrrnv PDdvLqlVkstnsL vmvnf MDP1_SHEEP : 249- 262: hrrnv PDhvLqlVkqtgsL vmvnf YPQQ_KLEPN : 227- 239: dgitl PDe-LgdVaglprL intlr YPQR_ACICA : 141- 152: alqqn PDl-Ld-VfyergL rsigp Number of patterns evaluated by Pratt:9326 Total running time: 6 seconds