------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 24 sequences from file RECOMBINASES_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 24 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RECOMBINASES_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BIN3_STAAU 202 BINL_STAAU 197 BINR_STAAU 192 CISA_BACSU 500 DNIV_BPMU 192 DNIV_BPP1 186 DNIV_BPP7 186 DNIV_ECOLI 184 DNIV_SALAE 190 DNIV_SALTY 190 PAA4_ECOLI 219 RES4_ECOLI 190 RESP_CLOPE 189 TNP0_ECOLI 194 TNP1_ECOLI 183 TNP2_ECOLI 186 TNP3_ECOLI 185 TNP4_KLEPN 185 TNP5_PSEAE 186 TNP6_ENTFC 191 TNP7_ECOLI 186 TNP7_ENTFA 183 TNPT_PSEPU 181 UVP1_ECOLI 198 Pratt run started at Thu Feb 6 21:05:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 24( 24) Y-x-R-x-S-x(3)-Q 2: 16.1802 24( 24) Y-x-R-x-S-x(2,3)-Q 3: 16.1802 24( 24) Y-x(0,1)-R-x-S-x(3)-Q 4: 12.0102 36( 24) E-R-x(4,5)-R 5: 12.0102 31( 24) G-x(4)-R-x(2,3)-L 6: 12.0102 24( 24) R-x-S-x(2,3)-Q 7: 12.0102 26( 24) R-x(1,2)-S-x(3)-Q 8: 12.0102 24( 24) R-x(0,1)-S-x(3)-Q 9: 11.5102 26( 24) A-x(3)-G-x(1,3)-G 10: 11.5102 24( 24) A-x(2,3)-G-x(2,3)-G 11: 11.5102 27( 24) G-x(3,4)-A-x(2,3)-G 12: 11.5102 28( 24) G-x(2,3)-A-x(3,4)-G 13: 11.5102 40( 24) I-x(1,2)-E-x(3,4)-G 14: 11.5102 33( 24) L-x(4,5)-D-x(0,1)-L 15: 11.0102 33( 24) I-x(1,2)-R-x(1,3)-G 16: 11.0102 28( 24) G-x(3,4)-G-x(0,2)-R 17: 11.0102 37( 24) A-x(1,3)-G-x(2,3)-G 18: 11.0102 38( 24) R-x(2,3)-G-x(1,3)-A 19: 11.0102 56( 24) L-x(2,3)-L-x(1,3)-R 20: 11.0102 42( 24) G-x(3,4)-R-x(1,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 24.9893 24( 24) Y-x-R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] B 2: 24.4893 24( 24) Y-x(0,1)-R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] C 3: 21.0618 24( 24) Y-x-R-x-S-x(2,3)-Q-[ADNQST]-x(3)-[QS] D 4: 20.8192 24( 24) R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] E 5: 20.3192 24( 24) R-x(0,1)-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] F 6: 19.0876 24( 24) R-x(2,3)-G-x(1,3)-A-x(3)-[GT]-x(3)-[AGSV]-[HKR] G 7: 18.1095 26( 24) E-R-x(4,5)-R-x(2)-[AEGQST]-[ADGQ]-x(3)-[AGTV] H 8: 16.8917 24( 24) R-x-S-x(2,3)-Q-[ADNQST]-x(3)-[QS] I 9: 14.2546 26( 24) G-x(3)-[DEGN]-R-x(2,3)-L J 10: 14.2038 24( 24) A-x(3)-G-x(1,3)-G-[HKR] K 11: 14.1131 24( 24) A-x(2,3)-G-x(2,3)-G-[EHR] L 12: 13.6131 37( 24) A-x(1,3)-G-x(2,3)-G-[EHR] M 13: 11.5102 27( 24) G-x(3,4)-A-x(2,3)-G N 14: 11.5102 28( 24) G-x(2,3)-A-x(3,4)-G O 15: 11.5102 40( 24) I-x(1,2)-E-x(3,4)-G P 16: 11.5102 33( 24) L-x(4,5)-D-x(0,1)-L Q 17: 11.0102 33( 24) I-x(1,2)-R-x(1,3)-G R 18: 11.0102 28( 24) G-x(3,4)-G-x(0,2)-R S 19: 11.0102 38( 24) R-x(2,3)-G-x(1,3)-A T 20: 11.0102 56( 24) L-x(2,3)-L-x(1,3)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 24.9893 24( 24) Y-x-R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 5- 18: miig YaRvSSldQNlerQ lenlk BINL_STAAU : 5- 18: mkig YaRvSTglQNlnlQ edrln BINR_STAAU : 5- 18: mkig YaRvSTglQNlnlQ edrln CISA_BACSU : 5- 18: miai YvRvSTeeQAikgS sidsq DNIV_BPMU : 4- 17: lig YvRvSTndQNtdlQ rnalv DNIV_BPP1 : 5- 18: mlig YvRvSTneQNtalQ rnale DNIV_BPP7 : 5- 18: mlig YvRvSTneQNtalQ rnale DNIV_ECOLI : 5- 18: mlig YvRvSTndQNtdlQ rnaln DNIV_SALAE : 6- 19: matig YiRvSTidQNidlQ rnalt DNIV_SALTY : 6- 19: matig YiRvSTidQNidlQ rnalt PAA4_ECOLI : 19- 32: kvari YlRaSTdeQNlerQ eslva RES4_ECOLI : 6- 19: mrlfg YaRvSTsqQSldiQ ikglk RESP_CLOPE : 5- 18: mlvg YaRvSTeeQSlnrQ idmlv TNP0_ECOLI : 7- 20: srvfa YcRvSTleQTtenQ rreie TNP1_ECOLI : 6- 19: mrlfg YaRvSTsqQSldiQ vralk TNP2_ECOLI : 8- 21: gqrig YiRvSTfdQNperQ legvk TNP3_ECOLI : 6- 19: mrifg YaRvSTsqQSldiQ iralk TNP4_KLEPN : 6- 19: mrifg YaRvSTsqQSldiQ iravk TNP5_PSEAE : 8- 21: ghrig YvRvSSfdQNperQ leqtq TNP6_ENTFC : 6- 19: mrkig YiRvSStnQNpsrQ fqqln TNP7_ECOLI : 8- 21: ghrig YvRvSSfdQNperQ leqtq TNP7_ENTFA : 5- 18: mifg YaRvSTddQNlslQ idalt TNPT_PSEPU : 6- 19: mrlfg YaRvSTsqQSldvQ ikalk UVP1_ECOLI : 5- 18: miig YaRkSThlQDvthQ vdelt B 2: 24.4893 24( 24) Y-x(0,1)-R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 5- 18: miig YaRvSSldQNlerQ lenlk BINL_STAAU : 5- 18: mkig YaRvSTglQNlnlQ edrln BINR_STAAU : 5- 18: mkig YaRvSTglQNlnlQ edrln CISA_BACSU : 5- 18: miai YvRvSTeeQAikgS sidsq DNIV_BPMU : 4- 17: lig YvRvSTndQNtdlQ rnalv DNIV_BPP1 : 5- 18: mlig YvRvSTneQNtalQ rnale DNIV_BPP7 : 5- 18: mlig YvRvSTneQNtalQ rnale DNIV_ECOLI : 5- 18: mlig YvRvSTndQNtdlQ rnaln DNIV_SALAE : 6- 19: matig YiRvSTidQNidlQ rnalt DNIV_SALTY : 6- 19: matig YiRvSTidQNidlQ rnalt PAA4_ECOLI : 19- 32: kvari YlRaSTdeQNlerQ eslva RES4_ECOLI : 6- 19: mrlfg YaRvSTsqQSldiQ ikglk RESP_CLOPE : 5- 18: mlvg YaRvSTeeQSlnrQ idmlv TNP0_ECOLI : 7- 20: srvfa YcRvSTleQTtenQ rreie TNP1_ECOLI : 6- 19: mrlfg YaRvSTsqQSldiQ vralk TNP2_ECOLI : 8- 21: gqrig YiRvSTfdQNperQ legvk TNP3_ECOLI : 6- 19: mrifg YaRvSTsqQSldiQ iralk TNP4_KLEPN : 6- 19: mrifg YaRvSTsqQSldiQ iravk TNP5_PSEAE : 8- 21: ghrig YvRvSSfdQNperQ leqtq TNP6_ENTFC : 6- 19: mrkig YiRvSStnQNpsrQ fqqln TNP7_ECOLI : 8- 21: ghrig YvRvSSfdQNperQ leqtq TNP7_ENTFA : 5- 18: mifg YaRvSTddQNlslQ idalt TNPT_PSEPU : 6- 19: mrlfg YaRvSTsqQSldvQ ikalk UVP1_ECOLI : 5- 18: miig YaRkSThlQDvthQ vdelt C 3: 21.0618 24( 24) Y-x-R-x-S-x(2,3)-Q-[ADNQST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 5- 18: miig YaRvSsldQNlerQ lenlk BINL_STAAU : 5- 18: mkig YaRvStglQNlnlQ edrln BINR_STAAU : 5- 18: mkig YaRvStglQNlnlQ edrln CISA_BACSU : 5- 18: miai YvRvSteeQAikgS sidsq DNIV_BPMU : 4- 17: lig YvRvStndQNtdlQ rnalv DNIV_BPP1 : 5- 18: mlig YvRvStneQNtalQ rnale DNIV_BPP7 : 5- 18: mlig YvRvStneQNtalQ rnale DNIV_ECOLI : 5- 18: mlig YvRvStndQNtdlQ rnaln DNIV_SALAE : 6- 19: matig YiRvStidQNidlQ rnalt DNIV_SALTY : 6- 19: matig YiRvStidQNidlQ rnalt PAA4_ECOLI : 19- 32: kvari YlRaStdeQNlerQ eslva RES4_ECOLI : 6- 19: mrlfg YaRvStsqQSldiQ ikglk RESP_CLOPE : 5- 18: mlvg YaRvSteeQSlnrQ idmlv TNP0_ECOLI : 7- 20: srvfa YcRvStleQTtenQ rreie TNP1_ECOLI : 6- 19: mrlfg YaRvStsqQSldiQ vralk TNP2_ECOLI : 8- 21: gqrig YiRvStfdQNperQ legvk TNP3_ECOLI : 6- 19: mrifg YaRvStsqQSldiQ iralk TNP4_KLEPN : 6- 19: mrifg YaRvStsqQSldiQ iravk TNP5_PSEAE : 8- 21: ghrig YvRvSsfdQNperQ leqtq TNP6_ENTFC : 6- 19: mrkig YiRvSstnQNpsrQ fqqln TNP7_ECOLI : 8- 21: ghrig YvRvSsfdQNperQ leqtq TNP7_ENTFA : 5- 18: mifg YaRvStddQNlslQ idalt TNPT_PSEPU : 6- 19: mrlfg YaRvStsqQSldvQ ikalk UVP1_ECOLI : 5- 18: miig YaRkSthlQDvthQ vdelt D 4: 20.8192 24( 24) R-x-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 7- 18: iigya RvSSldQNlerQ lenlk BINL_STAAU : 7- 18: kigya RvSTglQNlnlQ edrln BINR_STAAU : 7- 18: kigya RvSTglQNlnlQ edrln CISA_BACSU : 7- 18: iaiyv RvSTeeQAikgS sidsq DNIV_BPMU : 6- 17: ligyv RvSTndQNtdlQ rnalv DNIV_BPP1 : 7- 18: ligyv RvSTneQNtalQ rnale DNIV_BPP7 : 7- 18: ligyv RvSTneQNtalQ rnale DNIV_ECOLI : 7- 18: ligyv RvSTndQNtdlQ rnaln DNIV_SALAE : 8- 19: tigyi RvSTidQNidlQ rnalt DNIV_SALTY : 8- 19: tigyi RvSTidQNidlQ rnalt PAA4_ECOLI : 21- 32: ariyl RaSTdeQNlerQ eslva RES4_ECOLI : 8- 19: lfgya RvSTsqQSldiQ ikglk RESP_CLOPE : 7- 18: lvgya RvSTeeQSlnrQ idmlv TNP0_ECOLI : 9- 20: vfayc RvSTleQTtenQ rreie TNP1_ECOLI : 8- 19: lfgya RvSTsqQSldiQ vralk TNP2_ECOLI : 10- 21: rigyi RvSTfdQNperQ legvk TNP3_ECOLI : 8- 19: ifgya RvSTsqQSldiQ iralk TNP4_KLEPN : 8- 19: ifgya RvSTsqQSldiQ iravk TNP5_PSEAE : 10- 21: rigyv RvSSfdQNperQ leqtq TNP6_ENTFC : 8- 19: kigyi RvSStnQNpsrQ fqqln TNP7_ECOLI : 10- 21: rigyv RvSSfdQNperQ leqtq TNP7_ENTFA : 7- 18: ifgya RvSTddQNlslQ idalt TNPT_PSEPU : 8- 19: lfgya RvSTsqQSldvQ ikalk UVP1_ECOLI : 7- 18: iigya RkSThlQDvthQ vdelt E 5: 20.3192 24( 24) R-x(0,1)-S-[ST]-x(2)-Q-[ADNST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 7- 18: iigya RvSSldQNlerQ lenlk BINL_STAAU : 7- 18: kigya RvSTglQNlnlQ edrln BINR_STAAU : 7- 18: kigya RvSTglQNlnlQ edrln CISA_BACSU : 7- 18: iaiyv RvSTeeQAikgS sidsq DNIV_BPMU : 6- 17: ligyv RvSTndQNtdlQ rnalv DNIV_BPP1 : 7- 18: ligyv RvSTneQNtalQ rnale DNIV_BPP7 : 7- 18: ligyv RvSTneQNtalQ rnale DNIV_ECOLI : 7- 18: ligyv RvSTndQNtdlQ rnaln DNIV_SALAE : 8- 19: tigyi RvSTidQNidlQ rnalt DNIV_SALTY : 8- 19: tigyi RvSTidQNidlQ rnalt PAA4_ECOLI : 21- 32: ariyl RaSTdeQNlerQ eslva RES4_ECOLI : 8- 19: lfgya RvSTsqQSldiQ ikglk RESP_CLOPE : 7- 18: lvgya RvSTeeQSlnrQ idmlv TNP0_ECOLI : 9- 20: vfayc RvSTleQTtenQ rreie TNP1_ECOLI : 8- 19: lfgya RvSTsqQSldiQ vralk TNP2_ECOLI : 10- 21: rigyi RvSTfdQNperQ legvk TNP3_ECOLI : 8- 19: ifgya RvSTsqQSldiQ iralk TNP4_KLEPN : 8- 19: ifgya RvSTsqQSldiQ iravk TNP5_PSEAE : 10- 21: rigyv RvSSfdQNperQ leqtq TNP6_ENTFC : 8- 19: kigyi RvSStnQNpsrQ fqqln TNP7_ECOLI : 10- 21: rigyv RvSSfdQNperQ leqtq TNP7_ENTFA : 7- 18: ifgya RvSTddQNlslQ idalt TNPT_PSEPU : 8- 19: lfgya RvSTsqQSldvQ ikalk UVP1_ECOLI : 7- 18: iigya RkSThlQDvthQ vdelt F 6: 19.0876 24( 24) R-x(2,3)-G-x(1,3)-A-x(3)-[GT]-x(3)-[AGSV]-[HKR] Occurences: 24(24) BIN3_STAAU : 131- 148: neskr RqaqGiqvAkekGvykGR pllys BINL_STAAU : 124- 141: nlile RssaGriaArarGrygGR pekln BINR_STAAU : 124- 141: nlile RssaGriaArarGrygGR pekln CISA_BACSU : 191- 205: spffg Rvn-Gi--AlhlTqmgVK tkkga DNIV_BPMU : 121- 138: eliie RtmaGlaaArnkGrigGR ppklt DNIV_BPP1 : 122- 139: elive RtraGldaAraeGrigGR rpkyq DNIV_BPP7 : 122- 139: elive RtraGldaAraeGrigGR rpkyq DNIV_ECOLI : 122- 139: elive RtkaGletAraqGrigGR rpklt DNIV_SALAE : 123- 140: elive RtlaGlaaAraqGrlgGH prain DNIV_SALTY : 123- 140: elive RtlaGlaaAraqGrlgGR prain PAA4_ECOLI : 155- 172: edrre RqrqGvqlAkaaGrytGR krdag RES4_ECOLI : 125- 142: rrile RtneGrqeAklkGirfGR kriid RESP_CLOPE : 127- 144: dlisq RtkeGlksAkarGrngGR pskrn TNP0_ECOLI : 131- 148: dllle RthsGiarAkatGkrfGR psaln TNP1_ECOLI : 125- 142: qrile RtneGrqeAmakGvvfGR krkid TNP2_ECOLI : 125- 142: alire RqreGialAkqrGayrGR kksls TNP3_ECOLI : 125- 142: rrile RtneGrqeAklkGikfGR rrtvd TNP4_KLEPN : 125- 142: rrile RtneGrqeAklkGikfGR rrtvd TNP5_PSEAE : 125- 142: alire RqreGitlAkqrGayrGR kkals TNP6_ENTFC : 126- 143: dlirm RqreGielAkkeGkfkGR lkkyh TNP7_ECOLI : 125- 142: alire RqreGialAkqrGayrGR kkals TNP7_ENTFA : 122- 139: diiie RtnsGlkaArvrGkkgGR pskgk TNPT_PSEPU : 125- 142: lrile RtneGrleAkakGvkfGR kptvd UVP1_ECOLI : 128- 145: nrnie RtrsGlaaArarGrvgGR kpsls G 7: 18.1095 26( 24) E-R-x(4,5)-R-x(2)-[AEGQST]-[ADGQ]-x(3)-[AGTV] Occurences: 26(24) BIN3_STAAU : 124- 138: mvseq ERnesk-RrqAQgiqV akekg BIN3_STAAU : 124- 139: mvseq ERneskrRqaQGiqvA kekgv BINL_STAAU : 117- 132: afaef ERnlileRssAGriaA rargr BINR_STAAU : 117- 132: afaef ERnlileRssAGriaA rargr CISA_BACSU : 50- 64: sgell ERpaln-RlrEDaskG lisqv DNIV_BPMU : 81- 95: vgelr ERginf-RslTDsidT sspmg DNIV_BPMU : 114- 129: alaem EReliieRtmAGlaaA rnkgr DNIV_BPP1 : 115- 130: alaem EReliveRtrAGldaA raegr DNIV_BPP7 : 115- 130: alaem EReliveRtrAGldaA raegr DNIV_ECOLI : 82- 96: veelr ERginf-RslTDsidT stpmg DNIV_ECOLI : 115- 130: alaem EReliveRtkAGletA raqgr DNIV_SALAE : 116- 131: apaem EReliveRtlAGlaaA raqgr DNIV_SALTY : 116- 131: alaem EReliveRtlAGlaaA raqgr PAA4_ECOLI : 94- 109: plaea ERlvasiRakGAklaV pgvvd RES4_ECOLI : 118- 133: avaqa ERrrileRtnEGrqeA klkgi RESP_CLOPE : 120- 135: glsql ERdlisqRtkEGlksA kargr TNP0_ECOLI : 124- 139: avaef ERdllleRthSGiarA katgk TNP1_ECOLI : 118- 133: avaqa ERqrileRtnEGrqeA makgv TNP2_ECOLI : 118- 133: afaef ERalireRqrEGialA kqrga TNP3_ECOLI : 118- 133: avaqa ERrrileRtnEGrqeA klkgi TNP4_KLEPN : 118- 133: avaqa ERrrileRtnEGrqeA klkgi TNP5_PSEAE : 118- 133: afaef ERalireRqrEGitlA kqrga TNP6_ENTFC : 119- 134: gvnql ERdlirmRqrEGielA kkegk TNP7_ECOLI : 118- 133: afaef ERalireRqrEGialA kqrga TNP7_ENTFA : 115- 130: slael ERdiiieRtnSGlkaA rvrgk TNPT_PSEPU : 118- 133: avaqa ERlrileRtnEGrleA kakgv UVP1_ECOLI : 121- 136: ifsnf ERnrnieRtrSGlaaA rargr H 8: 16.8917 24( 24) R-x-S-x(2,3)-Q-[ADNQST]-x(3)-[QS] Occurences: 24(24) BIN3_STAAU : 7- 18: iigya RvSsldQNlerQ lenlk BINL_STAAU : 7- 18: kigya RvStglQNlnlQ edrln BINR_STAAU : 7- 18: kigya RvStglQNlnlQ edrln CISA_BACSU : 7- 18: iaiyv RvSteeQAikgS sidsq DNIV_BPMU : 6- 17: ligyv RvStndQNtdlQ rnalv DNIV_BPP1 : 7- 18: ligyv RvStneQNtalQ rnale DNIV_BPP7 : 7- 18: ligyv RvStneQNtalQ rnale DNIV_ECOLI : 7- 18: ligyv RvStndQNtdlQ rnaln DNIV_SALAE : 8- 19: tigyi RvStidQNidlQ rnalt DNIV_SALTY : 8- 19: tigyi RvStidQNidlQ rnalt PAA4_ECOLI : 21- 32: ariyl RaStdeQNlerQ eslva RES4_ECOLI : 8- 19: lfgya RvStsqQSldiQ ikglk RESP_CLOPE : 7- 18: lvgya RvSteeQSlnrQ idmlv TNP0_ECOLI : 9- 20: vfayc RvStleQTtenQ rreie TNP1_ECOLI : 8- 19: lfgya RvStsqQSldiQ vralk TNP2_ECOLI : 10- 21: rigyi RvStfdQNperQ legvk TNP3_ECOLI : 8- 19: ifgya RvStsqQSldiQ iralk TNP4_KLEPN : 8- 19: ifgya RvStsqQSldiQ iravk TNP5_PSEAE : 10- 21: rigyv RvSsfdQNperQ leqtq TNP6_ENTFC : 8- 19: kigyi RvSstnQNpsrQ fqqln TNP7_ECOLI : 10- 21: rigyv RvSsfdQNperQ leqtq TNP7_ENTFA : 7- 18: ifgya RvStddQNlslQ idalt TNPT_PSEPU : 8- 19: lfgya RvStsqQSldvQ ikalk UVP1_ECOLI : 7- 18: iigya RkSthlQDvthQ vdelt I 9: 14.2546 26( 24) G-x(3)-[DEGN]-R-x(2,3)-L Occurences: 26(24) BIN3_STAAU : 143- 151: vakek GvykGRpl-L yspna BINL_STAAU : 136- 145: aarar GrygGRpekL nqkdl BINR_STAAU : 136- 145: aarar GrygGRpekL nkqdl CISA_BACSU : 46- 54: degfs GellERpa-L nrlre DNIV_BPMU : 36- 44: edkls GtrtDRpg-L krdlk DNIV_BPMU : 133- 142: aarnk GrigGRppkL tkaew DNIV_BPP1 : 37- 45: edkas GkkaERpg-L kkvlr DNIV_BPP7 : 37- 45: edkas GkqtERpg-L kkvlr DNIV_ECOLI : 37- 45: edkis GtksERpg-L kkllr DNIV_ECOLI : 134- 143: taraq GrigGRrpkL tpeqw DNIV_SALAE : 38- 46: edris GkiaNRpg-L kralk DNIV_SALTY : 38- 46: edris GkiaNRpg-L kralk PAA4_ECOLI : 56- 64: rekas GaraDRpe-L lrmia PAA4_ECOLI : 56- 65: rekas GaraDRpelL rmiad RES4_ECOLI : 40- 48: tdkas GsstDRkg-L dllrm RESP_CLOPE : 39- 47: qekis GmkpNReq-L dkmid TNP0_ECOLI : 143- 152: rakat GkrfGRpsaL neeqq TNP1_ECOLI : 40- 48: tdkas GsssDRkg-L dllrm TNP2_ECOLI : 137- 146: lakqr GayrGRkksL sseri TNP3_ECOLI : 40- 48: tdkas GsstDReg-L dllrm TNP4_KLEPN : 40- 48: tdkas GsstDReg-L dllrm TNP5_PSEAE : 137- 146: lakqr GayrGRkkaL sdeqa TNP6_ENTFC : 38- 46: eekvs GatkDReq-L qkvld TNP7_ECOLI : 137- 146: lakqr GayrGRkkaL sdeqa TNP7_ENTFA : 37- 45: qekvt GakkDRpq-L eemin TNPT_PSEPU : 40- 48: tdkvs GshvNReg-L rmlrl UVP1_ECOLI : 140- 149: aarar GrvgGRkpsL seddi J 10: 14.2038 24( 24) A-x(3)-G-x(1,3)-G-[HKR] Occurences: 24(24) BIN3_STAAU : 139- 148: qgiqv AkekGvykGR pllys BINL_STAAU : 132- 141: agria ArarGrygGR pekln BINR_STAAU : 132- 141: agria ArarGrygGR pekln CISA_BACSU : 336- 343: knysg AkdrGc--GK emsen DNIV_BPMU : 129- 138: aglaa ArnkGrigGR ppklt DNIV_BPP1 : 130- 139: aglda AraeGrigGR rpkyq DNIV_BPP7 : 130- 139: aglda AraeGrigGR rpkyq DNIV_ECOLI : 130- 139: aglet AraqGrigGR rpklt DNIV_SALAE : 131- 140: aglaa AraqGrlgGH prain DNIV_SALTY : 131- 140: aglaa AraqGrlgGR prain PAA4_ECOLI : 163- 172: qgvql AkaaGrytGR krdag RES4_ECOLI : 133- 142: egrqe AklkGirfGR kriid RESP_CLOPE : 135- 144: eglks AkarGrngGR pskrn TNP0_ECOLI : 139- 148: sgiar AkatGkrfGR psaln TNP1_ECOLI : 133- 142: egrqe AmakGvvfGR krkid TNP2_ECOLI : 133- 142: egial AkqrGayrGR kksls TNP3_ECOLI : 133- 142: egrqe AklkGikfGR rrtvd TNP4_KLEPN : 133- 142: egrqe AklkGikfGR rrtvd TNP5_PSEAE : 133- 142: egitl AkqrGayrGR kkals TNP6_ENTFC : 134- 143: egiel AkkeGkfkGR lkkyh TNP7_ECOLI : 133- 142: egial AkqrGayrGR kkals TNP7_ENTFA : 130- 139: sglka ArvrGkkgGR pskgk TNPT_PSEPU : 133- 142: egrle AkakGvkfGR kptvd UVP1_ECOLI : 136- 145: sglaa ArarGrvgGR kpsls K 11: 14.1131 24( 24) A-x(2,3)-G-x(2,3)-G-[EHR] Occurences: 24(24) BIN3_STAAU : 139- 148: qgiqv AkekGvykGR pllys BINL_STAAU : 132- 141: agria ArarGrygGR pekln BINR_STAAU : 132- 141: agria ArarGrygGR pekln CISA_BACSU : 40- 47: dvlky Ade-Gfs-GE llerp DNIV_BPMU : 129- 138: aglaa ArnkGrigGR ppklt DNIV_BPP1 : 130- 139: aglda AraeGrigGR rpkyq DNIV_BPP7 : 130- 139: aglda AraeGrigGR rpkyq DNIV_ECOLI : 130- 139: aglet AraqGrigGR rpklt DNIV_SALAE : 131- 140: aglaa AraqGrlgGH prain DNIV_SALTY : 131- 140: aglaa AraqGrlgGR prain PAA4_ECOLI : 163- 172: qgvql AkaaGrytGR krdag RES4_ECOLI : 133- 142: egrqe AklkGirfGR kriid RESP_CLOPE : 135- 144: eglks AkarGrngGR pskrn TNP0_ECOLI : 139- 148: sgiar AkatGkrfGR psaln TNP1_ECOLI : 133- 142: egrqe AmakGvvfGR krkid TNP2_ECOLI : 133- 142: egial AkqrGayrGR kksls TNP3_ECOLI : 133- 142: egrqe AklkGikfGR rrtvd TNP4_KLEPN : 133- 142: egrqe AklkGikfGR rrtvd TNP5_PSEAE : 133- 142: egitl AkqrGayrGR kkals TNP6_ENTFC : 134- 143: egiel AkkeGkfkGR lkkyh TNP7_ECOLI : 133- 142: egial AkqrGayrGR kkals TNP7_ENTFA : 130- 139: sglka ArvrGkkgGR pskgk TNPT_PSEPU : 133- 142: egrle AkakGvkfGR kptvd UVP1_ECOLI : 136- 145: sglaa ArarGrvgGR kpsls L 12: 13.6131 37( 24) A-x(1,3)-G-x(2,3)-G-[EHR] Occurences: 37(24) BIN3_STAAU : 139- 148: qgiqv AkekGvykGR pllys BINL_STAAU : 132- 141: agria ArarGrygGR pekln BINL_STAAU : 134- 141: riaar Ar--GrygGR pekln BINR_STAAU : 132- 141: agria ArarGrygGR pekln BINR_STAAU : 134- 141: riaar Ar--GrygGR pekln CISA_BACSU : 40- 47: dvlky Ade-Gfs-GE llerp DNIV_BPMU : 129- 138: aglaa ArnkGrigGR ppklt DNIV_BPP1 : 130- 139: aglda AraeGrigGR rpkyq DNIV_BPP1 : 132- 139: ldaar Ae--GrigGR rpkyq DNIV_BPP7 : 130- 139: aglda AraeGrigGR rpkyq DNIV_BPP7 : 132- 139: ldaar Ae--GrigGR rpkyq DNIV_ECOLI : 130- 139: aglet AraqGrigGR rpklt DNIV_ECOLI : 132- 139: letar Aq--GrigGR rpklt DNIV_SALAE : 131- 140: aglaa AraqGrlgGH prain DNIV_SALAE : 133- 140: laaar Aq--GrlgGH prain DNIV_SALTY : 131- 140: aglaa AraqGrlgGR prain DNIV_SALTY : 133- 140: laaar Aq--GrlgGR prain PAA4_ECOLI : 163- 172: qgvql AkaaGrytGR krdag PAA4_ECOLI : 165- 172: vqlak Aa--GrytGR krdag RES4_ECOLI : 133- 142: egrqe AklkGirfGR kriid RESP_CLOPE : 135- 144: eglks AkarGrngGR pskrn RESP_CLOPE : 137- 144: lksak Ar--GrngGR pskrn TNP0_ECOLI : 139- 148: sgiar AkatGkrfGR psaln TNP0_ECOLI : 141- 148: iarak At--GkrfGR psaln TNP1_ECOLI : 133- 142: egrqe AmakGvvfGR krkid TNP1_ECOLI : 135- 142: rqeam Ak--GvvfGR krkid TNP2_ECOLI : 133- 142: egial AkqrGayrGR kksls TNP3_ECOLI : 133- 142: egrqe AklkGikfGR rrtvd TNP4_KLEPN : 133- 142: egrqe AklkGikfGR rrtvd TNP5_PSEAE : 133- 142: egitl AkqrGayrGR kkals TNP6_ENTFC : 134- 143: egiel AkkeGkfkGR lkkyh TNP7_ECOLI : 133- 142: egial AkqrGayrGR kkals TNP7_ENTFA : 130- 139: sglka ArvrGkkgGR pskgk TNPT_PSEPU : 133- 142: egrle AkakGvkfGR kptvd TNPT_PSEPU : 135- 142: rleak Ak--GvkfGR kptvd UVP1_ECOLI : 136- 145: sglaa ArarGrvgGR kpsls UVP1_ECOLI : 138- 145: laaar Ar--GrvgGR kpsls M 13: 11.5102 27( 24) G-x(3,4)-A-x(2,3)-G Occurences: 27(24) BIN3_STAAU : 135- 143: rrqaq Giqv-AkekG vykgr BINL_STAAU : 128- 136: erssa Gria-ArarG ryggr BINR_STAAU : 128- 136: erssa Gria-ArarG ryggr CISA_BACSU : 111- 119: anspe GqlffAmr-G aisef DNIV_BPMU : 125- 133: ertma Glaa-ArnkG riggr DNIV_BPP1 : 126- 134: ertra Glda-AraeG riggr DNIV_BPP7 : 126- 134: ertra Glda-AraeG riggr DNIV_ECOLI : 126- 134: ertka Glet-AraqG riggr DNIV_SALAE : 127- 135: ertla Glaa-AraqG rlggh DNIV_SALTY : 127- 135: ertla Glaa-AraqG rlggr PAA4_ECOLI : 104- 111: sirak Gakl-Avp-G vvdls PAA4_ECOLI : 159- 167: erqrq Gvql-AkaaG rytgr RES4_ECOLI : 129- 137: ertne Grqe-AklkG irfgr RESP_CLOPE : 131- 139: qrtke Glks-AkarG rnggr TNP0_ECOLI : 135- 143: erths Giar-AkatG krfgr TNP1_ECOLI : 129- 137: ertne Grqe-AmakG vvfgr TNP2_ECOLI : 129- 137: erqre Gial-AkqrG ayrgr TNP3_ECOLI : 129- 137: ertne Grqe-AklkG ikfgr TNP4_KLEPN : 129- 137: ertne Grqe-AklkG ikfgr TNP5_PSEAE : 129- 137: erqre Gitl-AkqrG ayrgr TNP6_ENTFC : 130- 138: mrqre Giel-AkkeG kfkgr TNP7_ECOLI : 129- 137: erqre Gial-AkqrG ayrgr TNP7_ENTFA : 126- 134: ertns Glka-ArvrG kkggr TNPT_PSEPU : 129- 137: ertne Grle-AkakG vkfgr UVP1_ECOLI : 38- 46: eqisr GgskrAkn-G apele UVP1_ECOLI : 39- 46: qisrg Gskr-Akn-G apele UVP1_ECOLI : 132- 140: ertrs Glaa-ArarG rvggr N 14: 11.5102 28( 24) G-x(2,3)-A-x(3,4)-G Occurences: 28(24) BIN3_STAAU : 135- 143: rrqaq GiqvAkek-G vykgr BINL_STAAU : 128- 136: erssa GriaArar-G ryggr BINL_STAAU : 128- 136: erssa Gri-AararG ryggr BINR_STAAU : 128- 136: erssa GriaArar-G ryggr BINR_STAAU : 128- 136: erssa Gri-AararG ryggr CISA_BACSU : 103- 111: lifvn Gey-AnspeG qlffa DNIV_BPMU : 125- 133: ertma GlaaArnk-G riggr DNIV_BPMU : 125- 133: ertma Gla-AarnkG riggr DNIV_BPP1 : 37- 44: edkas Gkk-Aerp-G lkkvl DNIV_BPP1 : 126- 134: ertra GldaArae-G riggr DNIV_BPP1 : 126- 134: ertra Gld-AaraeG riggr DNIV_BPP7 : 126- 134: ertra GldaArae-G riggr DNIV_BPP7 : 126- 134: ertra Gld-AaraeG riggr DNIV_ECOLI : 126- 134: ertka GletAraq-G riggr DNIV_SALAE : 38- 45: edris Gki-Anrp-G lkral DNIV_SALAE : 127- 135: ertla GlaaAraq-G rlggh DNIV_SALAE : 127- 135: ertla Gla-AaraqG rlggh DNIV_SALTY : 38- 45: edris Gki-Anrp-G lkral DNIV_SALTY : 127- 135: ertla GlaaAraq-G rlggr DNIV_SALTY : 127- 135: ertla Gla-AaraqG rlggr PAA4_ECOLI : 159- 167: erqrq GvqlAkaa-G rytgr RES4_ECOLI : 129- 137: ertne GrqeAklk-G irfgr RESP_CLOPE : 131- 139: qrtke GlksAkar-G rnggr TNP0_ECOLI : 43- 52: eehis GsvaAserpG firll TNP0_ECOLI : 135- 143: erths GiarAkat-G krfgr TNP1_ECOLI : 129- 137: ertne GrqeAmak-G vvfgr TNP2_ECOLI : 129- 137: erqre GialAkqr-G ayrgr TNP3_ECOLI : 129- 137: ertne GrqeAklk-G ikfgr TNP4_KLEPN : 129- 137: ertne GrqeAklk-G ikfgr TNP5_PSEAE : 129- 137: erqre GitlAkqr-G ayrgr TNP6_ENTFC : 130- 138: mrqre GielAkke-G kfkgr TNP7_ECOLI : 129- 137: erqre GialAkqr-G ayrgr TNP7_ENTFA : 126- 134: ertns GlkaArvr-G kkggr TNP7_ENTFA : 126- 134: ertns Glk-AarvrG kkggr TNPT_PSEPU : 129- 137: ertne GrleAkak-G vkfgr UVP1_ECOLI : 132- 140: ertrs GlaaArar-G rvggr UVP1_ECOLI : 132- 140: ertrs Gla-AararG rvggr O 15: 11.5102 40( 24) I-x(1,2)-E-x(3,4)-G Occurences: 40(24) BIN3_STAAU : 30- 37: fgaek IftEkqs-G ksien BINL_STAAU : 121- 128: fernl Il-ErssaG riaar BINR_STAAU : 121- 128: fernl Il-ErssaG riaar CISA_BACSU : 129- 136: fekak Ik-ErtssG rlqkm DNIV_BPMU : 29- 36: agceq If-EdklsG trtdr DNIV_BPMU : 118- 125: merel Ii-ErtmaG laaar DNIV_BPP1 : 30- 37: agcel If-EdkasG kkaer DNIV_BPP1 : 119- 126: merel Iv-ErtraG ldaar DNIV_BPP7 : 30- 37: agcel If-EdkasG kqter DNIV_BPP7 : 119- 126: merel Iv-ErtraG ldaar DNIV_ECOLI : 30- 37: agcel If-EdkisG tkser DNIV_ECOLI : 119- 126: merel Iv-ErtkaG letar DNIV_SALAE : 31- 38: ancdr If-EdrisG kianr DNIV_SALAE : 78- 85: nlval Is-ElherG ahfhs DNIV_SALAE : 120- 127: merel Iv-ErtlaG laaar DNIV_SALTY : 31- 38: ancdr If-EdrisG kianr DNIV_SALTY : 78- 85: nlval Is-ElherG ahfhs DNIV_SALTY : 120- 127: merel Iv-ErtlaG laaar PAA4_ECOLI : 49- 56: yyvag IyrEkas-G aradr RES4_ECOLI : 122- 129: aerrr Il-ErtneG rqeak RESP_CLOPE : 32- 39: vdkrn IyqEkis-G mkpnr RESP_CLOPE : 51- 57: qldkm Id-Elqe-G dtvii TNP0_ECOLI : 37- 43: rpqrl Ie-Ehis-G svaas TNP1_ECOLI : 80- 87: dmiql Ik-EfdaqG vsirf TNP1_ECOLI : 122- 129: aerqr Il-ErtneG rqeam TNP2_ECOLI : 122- 129: feral Ir-ErqreG ialak TNP3_ECOLI : 80- 87: dmiql Ik-EfdaqG vavrf TNP3_ECOLI : 122- 129: aerrr Il-ErtneG rqeak TNP4_KLEPN : 80- 87: dmiql Ik-EfdaqG vavrf TNP4_KLEPN : 122- 129: aerrr Il-ErtneG rqeak TNP5_PSEAE : 122- 129: feral Ir-ErqreG itlak TNP6_ENTFC : 30- 38: eigmd IiyEekvsG atkdr TNP6_ENTFC : 31- 38: igmdi IyeEkvs-G atkdr TNP6_ENTFC : 31- 38: igmdi Iy-EekvsG atkdr TNP7_ECOLI : 122- 129: feral Ir-ErqreG ialak TNP7_ENTFA : 118- 126: elerd IiiErtnsG lkaar TNP7_ENTFA : 119- 126: lerdi Ii-ErtnsG lkaar TNPT_PSEPU : 80- 87: dmiql Ik-EfddmG vairf TNPT_PSEPU : 97- 104: flddg IstEgtm-G kmvvt TNPT_PSEPU : 122- 129: aerlr Il-ErtneG rleak UVP1_ECOLI : 30- 38: agceq IyhEqisrG gskra P 16: 11.5102 33( 24) L-x(4,5)-D-x(0,1)-L Occurences: 33(24) BIN3_STAAU : 105- 112: ignpl LdkfmkD-L iiqil BINL_STAAU : 15- 22: tglqn Lnlqe-DrL naygs BINL_STAAU : 66- 73: wrldr LgrnmeD-L itlvn BINR_STAAU : 15- 22: tglqn Lnlqe-DrL nqygc BINR_STAAU : 66- 73: wrldr LgrnmaD-L itlvn CISA_BACSU : 407- 413: ltlis Lsddd-D-L didei DNIV_BPMU : 57- 65: qkgdt LvvwklDrL grsmk DNIV_BPP1 : 58- 66: srgdt LvvwklDrL grsmr DNIV_BPP7 : 58- 66: srgdt LvvwklDrL grsmr DNIV_ECOLI : 58- 66: sagdt LvvwklDrL grsmr DNIV_SALAE : 59- 67: nkgdt LvvwklDrL grsvk DNIV_SALTY : 59- 67: nkgdt LvvwklDrL grsvk PAA4_ECOLI : 64- 71: adrpe LlrmiaD-L qpgev PAA4_ECOLI : 65- 71: drpel Lrmia-D-L qpgev PAA4_ECOLI : 130- 137: vakiv Lesvq-DmL lklal RES4_ECOLI : 62- 69: egdvt Lvkkl-DrL grdta RESP_CLOPE : 15- 22: teeqs Lnrqi-DmL vdygv RESP_CLOPE : 47- 54: pnreq Ldkmi-DeL qegdt RESP_CLOPE : 116- 123: tvmsg LsqlerD-L isqrt TNP0_ECOLI : 66- 74: engdv LivtklDrL grnam TNP0_ECOLI : 98- 105: irvhc LalggvD-L tsaag TNP1_ECOLI : 62- 69: egdvi Lvkkl-DrL grdta TNP2_ECOLI : 66- 73: hsmdr LarnldD-L rrivq TNP2_ECOLI : 66- 73: hsmdr Larnl-DdL rrivq TNP3_ECOLI : 62- 69: egdvi Lvkkl-DrL grdta TNP4_KLEPN : 62- 69: egdvi Lvkkl-DrL grdta TNP5_PSEAE : 66- 73: hsmdr LarnldD-L rrlvq TNP5_PSEAE : 66- 73: hsmdr Larnl-DdL rrlvq TNP6_ENTFC : 46- 53: kdreq LqkvldD-L qeddi TNP6_ENTFC : 46- 53: kdreq Lqkvl-DdL qeddi TNP6_ENTFC : 91- 98: aslks LkdtwlD-L sednp TNP7_ECOLI : 66- 73: hsmdr LarnldD-L rrlvq TNP7_ECOLI : 66- 73: hsmdr Larnl-DdL rrlvq TNP7_ENTFA : 15- 22: tddqn Lslqi-DaL thygi TNP7_ENTFA : 22- 30: lqida LthygiDkL fqekv TNPT_PSEPU : 62- 69: egdvv Lvkkl-DrL grdta UVP1_ECOLI : 63- 71: regdt LvvwalDrL ggsls Q 17: 11.0102 33( 24) I-x(1,2)-R-x(1,3)-G Occurences: 33(24) BIN3_STAAU : 64- 68: fives Id-Rl--G rnyne BINL_STAAU : 121- 128: fernl IleRssaG riaar BINL_STAAU : 130- 136: ssagr IaaRar-G ryggr BINR_STAAU : 121- 128: fernl IleRssaG riaar BINR_STAAU : 130- 136: ssagr IaaRar-G ryggr CISA_BACSU : 129- 136: fekak IkeRtssG rlqkm DNIV_BPMU : 118- 125: merel IieRtmaG laaar DNIV_BPMU : 119- 125: ereli Ie-RtmaG laaar DNIV_BPP1 : 119- 126: merel IveRtraG ldaar DNIV_BPP7 : 119- 126: merel IveRtraG ldaar DNIV_ECOLI : 119- 126: merel IveRtkaG letar DNIV_SALAE : 40- 45: risgk IanRp--G lkral DNIV_SALAE : 120- 127: merel IveRtlaG laaar DNIV_SALTY : 40- 45: risgk IanRp--G lkral DNIV_SALTY : 120- 127: merel IveRtlaG laaar PAA4_ECOLI : 183- 188: mhdri ItlRs--G gssia PAA4_ECOLI : 183- 189: mhdri ItlRsg-G ssiak RES4_ECOLI : 122- 129: aerrr IleRtneG rqeak RESP_CLOPE : 124- 131: lerdl IsqRtkeG lksak TNP0_ECOLI : 161- 167: qqltv Ia-RinaG isisa TNP0_ECOLI : 184- 190: ttrqt Il-RvkaG qqss TNP1_ECOLI : 122- 129: aerqr IleRtneG rqeam TNP2_ECOLI : 122- 129: feral IreRqreG ialak TNP3_ECOLI : 122- 129: aerrr IleRtneG rqeak TNP4_KLEPN : 122- 129: aerrr IleRtneG rqeak TNP5_PSEAE : 122- 129: feral IreRqreG itlak TNP6_ENTFC : 123- 130: lerdl IrmRqreG ielak TNP7_ECOLI : 122- 129: feral IreRqreG ialak TNP7_ENTFA : 119- 126: lerdi IieRtnsG lkaar TNP7_ENTFA : 120- 126: erdii Ie-RtnsG lkaar TNPT_PSEPU : 122- 129: aerlr IleRtneG rleak TNPT_PSEPU : 164- 171: isame IakRlkiG rstvy UVP1_ECOLI : 35- 39: iyheq Is-Rg--G skrak UVP1_ECOLI : 126- 132: ernrn Ie-RtrsG laaar R 18: 11.0102 28( 24) G-x(3,4)-G-x(0,2)-R Occurences: 28(24) BIN3_STAAU : 143- 148: vakek Gvyk-G--R pllys BINL_STAAU : 136- 141: aarar Gryg-G--R pekln BINR_STAAU : 136- 141: aarar Gryg-G--R pekln CISA_BACSU : 309- 317: rcgkc GntmtGkkR kshgk DNIV_BPMU : 133- 138: aarnk Grig-G--R ppklt DNIV_BPP1 : 134- 139: aarae Grig-G--R rpkyq DNIV_BPP1 : 134- 140: aarae Grig-Gr-R pkyqe DNIV_BPP7 : 134- 139: aarae Grig-G--R rpkyq DNIV_BPP7 : 134- 140: aarae Grig-Gr-R pkyqe DNIV_ECOLI : 134- 139: taraq Grig-G--R rpklt DNIV_ECOLI : 134- 140: taraq Grig-Gr-R pkltp DNIV_SALAE : 135- 142: aaraq Grlg-GhpR ainrh DNIV_SALTY : 135- 140: aaraq Grlg-G--R prain DNIV_SALTY : 135- 142: aaraq Grlg-GrpR ainkh PAA4_ECOLI : 43- 51: atraa GyyvaGiyR ekasg PAA4_ECOLI : 167- 172: lakaa Gryt-G--R krdag PAA4_ECOLI : 167- 174: lakaa Gryt-GrkR dagmh RES4_ECOLI : 137- 142: eaklk Girf-G--R kriid RES4_ECOLI : 137- 144: eaklk Girf-GrkR iidrn RESP_CLOPE : 139- 144: sakar Grng-G--R pskrn TNP0_ECOLI : 143- 148: rakat Gkrf-G--R psaln TNP1_ECOLI : 137- 142: eamak Gvvf-G--R krkid TNP1_ECOLI : 137- 144: eamak Gvvf-GrkR kidrd TNP2_ECOLI : 3- 10: mt Gqri-GyiR vstfd TNP2_ECOLI : 137- 142: lakqr Gayr-G--R kksls TNP3_ECOLI : 137- 142: eaklk Gikf-G--R rrtvd TNP3_ECOLI : 137- 143: eaklk Gikf-Gr-R rtvdr TNP3_ECOLI : 137- 144: eaklk Gikf-GrrR tvdrn TNP4_KLEPN : 137- 142: eaklk Gikf-G--R rrtvd TNP4_KLEPN : 137- 143: eaklk Gikf-Gr-R rtvdr TNP4_KLEPN : 137- 144: eaklk Gikf-GrrR tvdrn TNP5_PSEAE : 3- 10: mq Ghri-GyvR vssfd TNP5_PSEAE : 137- 142: lakqr Gayr-G--R kkals TNP6_ENTFC : 138- 143: lakke Gkfk-G--R lkkyh TNP7_ECOLI : 3- 10: mq Ghri-GyvR vssfd TNP7_ECOLI : 137- 142: lakqr Gayr-G--R kkals TNP7_ENTFA : 134- 139: aarvr Gkkg-G--R pskgk TNPT_PSEPU : 137- 142: eakak Gvkf-G--R kptvd UVP1_ECOLI : 140- 145: aarar Grvg-G--R kpsls S 19: 11.0102 38( 24) R-x(2,3)-G-x(1,3)-A Occurences: 38(24) BIN3_STAAU : 131- 139: neskr RqaqGiqvA kekgv BINL_STAAU : 124- 131: nlile RssaGri-A ararg BINL_STAAU : 124- 132: nlile RssaGriaA rargr BINR_STAAU : 124- 131: nlile RssaGri-A ararg BINR_STAAU : 124- 132: nlile RssaGriaA rargr CISA_BACSU : 191- 196: spffg Rvn-Gi--A lhltq DNIV_BPMU : 121- 127: eliie RtmaGl--A aarnk DNIV_BPMU : 121- 128: eliie RtmaGla-A arnkg DNIV_BPMU : 121- 129: eliie RtmaGlaaA rnkgr DNIV_BPP1 : 122- 129: elive RtraGld-A araeg DNIV_BPP1 : 122- 130: elive RtraGldaA raegr DNIV_BPP7 : 122- 129: elive RtraGld-A araeg DNIV_BPP7 : 122- 130: elive RtraGldaA raegr DNIV_ECOLI : 122- 130: elive RtkaGletA raqgr DNIV_SALAE : 35- 41: rifed Ris-Gki-A nrpgl DNIV_SALAE : 123- 129: elive RtlaGl--A aaraq DNIV_SALAE : 123- 130: elive RtlaGla-A araqg DNIV_SALAE : 123- 131: elive RtlaGlaaA raqgr DNIV_SALAE : 136- 143: araqg Rlg-GhprA inrhe DNIV_SALTY : 35- 41: rifed Ris-Gki-A nrpgl DNIV_SALTY : 123- 129: elive RtlaGl--A aaraq DNIV_SALTY : 123- 130: elive RtlaGla-A araqg DNIV_SALTY : 123- 131: elive RtlaGlaaA raqgr DNIV_SALTY : 136- 143: araqg Rlg-GrprA inkhe PAA4_ECOLI : 40- 47: lvaat Raa-GyyvA giyre PAA4_ECOLI : 101- 108: lvasi Rak-GaklA vpgvv PAA4_ECOLI : 155- 163: edrre RqrqGvqlA kaagr PAA4_ECOLI : 186- 193: riitl Rsg-GssiA ktakl RES4_ECOLI : 2- 7: m Rlf-Gy--A rvsts RES4_ECOLI : 125- 133: rrile RtneGrqeA klkgi RESP_CLOPE : 127- 135: dlisq RtkeGlksA kargr TNP0_ECOLI : 131- 137: dllle RthsGi--A rakat TNP0_ECOLI : 131- 139: dllle RthsGiarA katgk TNP1_ECOLI : 2- 7: m Rlf-Gy--A rvsts TNP1_ECOLI : 125- 133: qrile RtneGrqeA makgv TNP2_ECOLI : 125- 131: alire RqreGi--A lakqr TNP2_ECOLI : 125- 133: alire RqreGialA kqrga TNP3_ECOLI : 2- 7: m Rif-Gy--A rvsts TNP3_ECOLI : 125- 133: rrile RtneGrqeA klkgi TNP4_KLEPN : 2- 7: m Rif-Gy--A rvsts TNP4_KLEPN : 125- 133: rrile RtneGrqeA klkgi TNP5_PSEAE : 125- 133: alire RqreGitlA kqrga TNP5_PSEAE : 157- 165: atlrq RataGepkA qlare TNP6_ENTFC : 126- 134: dlirm RqreGielA kkegk TNP7_ECOLI : 125- 131: alire RqreGi--A lakqr TNP7_ECOLI : 125- 133: alire RqreGialA kqrga TNP7_ECOLI : 157- 165: atlrq RataGepkA qlare TNP7_ENTFA : 122- 129: diiie RtnsGlk-A arvrg TNP7_ENTFA : 122- 130: diiie RtnsGlkaA rvrgk TNPT_PSEPU : 2- 7: m Rlf-Gy--A rvsts TNPT_PSEPU : 125- 133: lrile RtneGrleA kakgv UVP1_ECOLI : 128- 134: nrnie RtrsGl--A aarar UVP1_ECOLI : 128- 135: nrnie RtrsGla-A ararg UVP1_ECOLI : 128- 136: nrnie RtrsGlaaA rargr T 20: 11.0102 56( 24) L-x(2,3)-L-x(1,3)-R Occurences: 56(24) BIN3_STAAU : 11- 17: arvss LdqnLe--R qlenl BIN3_STAAU : 46- 54: enrpi LqkaLnfvR mgdrf BINL_STAAU : 63- 68: ivvwr Ldr-Lg--R nmedl BINL_STAAU : 76- 83: edlit LvneLne-R gvsfh BINR_STAAU : 63- 68: ivvwr Ldr-Lg--R nmadl BINR_STAAU : 76- 83: adlit LvneLnn-R gvsfh CISA_BACSU : 298- 304: sphny LlsgLv--R cgkcg CISA_BACSU : 299- 304: phnyl Lsg-Lv--R cgkcg DNIV_BPMU : 44- 50: tdrpg LkrdLk--R lqkgd DNIV_BPMU : 62- 67: lvvwk Ldr-Lg--R smkhl DNIV_BPMU : 75- 82: khlis LvgeLre-R ginfr DNIV_BPP1 : 49- 54: glkkv Lrm-Ls--R gdtlv DNIV_BPP1 : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_BPP1 : 76- 83: rhlvv LveeLrd-R ginfr DNIV_BPP7 : 49- 54: glkkv Lrm-Ls--R gdtlv DNIV_BPP7 : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_BPP7 : 76- 83: rhlvv LveeLrd-R ginfr DNIV_ECOLI : 45- 50: serpg Lkk-Ll--R tlsag DNIV_ECOLI : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_ECOLI : 76- 83: rhlvv LveeLre-R ginfr DNIV_SALAE : 64- 69: lvvwk Ldr-Lg--R svknl DNIV_SALAE : 77- 84: knlva LiseLhe-R gahfh DNIV_SALAE : 125- 132: ivert Lag-LaaaR aqgrl DNIV_SALTY : 64- 69: lvvwk Ldr-Lg--R svknl DNIV_SALTY : 77- 84: knlva LiseLhe-R gahfh DNIV_SALTY : 125- 132: ivert Lag-LaaaR aqgrl PAA4_ECOLI : 138- 146: vqdml LklaLqmaR ddyed RES4_ECOLI : 62- 68: egdvt LvkkLd--R lgrdt RES4_ECOLI : 66- 71: tlvkk Ldr-Lg--R dtadm RESP_CLOPE : 116- 121: tvmsg Lsq-Le--R dlisq RESP_CLOPE : 119- 127: sglsq LerdLisqR tkegl TNP0_ECOLI : 71- 76: livtk Ldr-Lg--R namdi TNP1_ECOLI : 62- 68: egdvi LvkkLd--R lgrdt TNP1_ECOLI : 66- 71: ilvkk Ldr-Lg--R dtadm TNP2_ECOLI : 66- 74: hsmdr LarnLddlR rivqt TNP2_ECOLI : 70- 75: rlarn Ldd-Lr--R ivqtl TNP3_ECOLI : 62- 68: egdvi LvkkLd--R lgrdt TNP3_ECOLI : 66- 71: ilvkk Ldr-Lg--R dtadm TNP4_KLEPN : 62- 68: egdvi LvkkLd--R lgrdt TNP4_KLEPN : 66- 71: ilvkk Ldr-Lg--R dtadm TNP5_PSEAE : 45- 53: tqrpq LealLsfvR egdtv TNP5_PSEAE : 66- 74: hsmdr LarnLddlR rlvqk TNP5_PSEAE : 70- 75: rlarn Ldd-Lr--R lvqkl TNP5_PSEAE : 76- 83: ddlrr LvqkLtq-R gvrie TNP6_ENTFC : 118- 124: agvnq LerdLi--R mrqre TNP6_ENTFC : 118- 126: agvnq LerdLirmR qregi TNP7_ECOLI : 45- 53: tqrpq LealLsfvR egdtv TNP7_ECOLI : 66- 74: hsmdr LarnLddlR rlvqk TNP7_ECOLI : 70- 75: rlarn Ldd-Lr--R lvqkl TNP7_ECOLI : 76- 83: ddlrr LvqkLtq-R gvrie TNP7_ENTFA : 111- 116: rvmas Lae-Le--R diiie TNPT_PSEPU : 62- 68: egdvv LvkkLd--R lgrdt TNPT_PSEPU : 66- 71: vlvkk Ldr-Lg--R dtadm TNPT_PSEPU : 120- 125: aqaer Lri-Le--R tnegr UVP1_ECOLI : 50- 58: ngape LencLkalR egdtl UVP1_ECOLI : 81- 88: sqvit LlddLkk-R gitfi UVP1_ECOLI : 82- 88: qvitl Ldd-Lkk-R gitfi Number of patterns evaluated by Pratt:928 Total running time: 1 seconds