------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 25 sequences from file RECOMBINASES_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 25 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RECOMBINASES_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BIN3_STAAU 202 BINL_STAAU 197 BINR_STAAU 192 CISA_BACSU 500 DNIV_BPMU 192 DNIV_BPP1 186 DNIV_BPP7 186 DNIV_ECOLI 184 DNIV_SALAE 190 DNIV_SALTY 190 PAA4_ECOLI 219 RES4_ECOLI 190 RESP_CLOPE 189 TNP0_ECOLI 194 TNP1_ECOLI 183 TNP2_ECOLI 186 TNP3_ECOLI 185 TNP4_KLEPN 185 TNP5_PSEAE 186 TNP6_ENTFC 191 TNP7_ECOLI 186 TNP7_ENTFA 183 TNPT_PSEPU 181 UVP1_ECOLI 198 YIM3_BPPH1 82 Pratt run started at Thu Feb 6 21:05:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 25( 25) Y-x-R-x-S-x(3)-Q 2: 12.5102 25( 25) R-x-S-x(3)-Q 3: 11.0102 27( 25) Y-x(2,3)-S-x(1,3)-Q 4: 11.0102 28( 25) R-x(0,2)-V-x(0,1)-S 5: 10.5102 67( 25) L-x(1,3)-L-x(1,3)-R 6: 10.5102 42( 25) I-x(1,3)-R-x(1,3)-T 7: 10.5102 33( 25) G-x(2,4)-R-x(1,3)-S 8: 8.3401 49( 25) S-x(5)-R 9: 8.3401 44( 25) R-x-S 10: 8.3401 53( 25) R-x(2)-L 11: 8.3401 44( 25) S-x(3)-Q 12: 8.3401 44( 25) T-x(2)-Q 13: 8.3401 36( 25) R-V 14: 7.8401 69( 25) R-x(1,2)-I 15: 7.8401 78( 25) R-x(0,1)-I 16: 7.8401 68( 25) R-x(4,5)-G 17: 7.8401 75( 25) R-x(3,4)-G 18: 7.8401 121( 25) L-x(0,1)-R 19: 7.8401 81( 25) L-x(2,3)-E 20: 7.8401 99( 25) L-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 21.7575 25( 25) Y-x-R-x-S-[ST]-x(2)-Q-[ADNST] B 2: 17.5874 25( 25) R-x-S-[ST]-x(2)-Q-[ADNST] C 3: 14.4120 25( 25) R-x-S-x(3)-Q-[ADNST] D 4: 13.4174 25( 25) S-[ST]-x(2)-Q-[ADNST] E 5: 13.1806 25( 25) R-V-x-[AGST]-x(3)-[ANS] F 6: 12.6600 25( 25) Y-x(2,3)-S-x(1,3)-Q-[ADNQST] G 7: 12.6490 25( 25) R-x(0,2)-V-x(0,1)-S-x(2)-[ADEQST] H 8: 12.4328 28( 25) G-x(2,4)-R-x(1,3)-S-x(3)-[ADENQ] I 9: 11.9691 38( 25) L-x(0,1)-R-x-[AGIL]-x-[DNQRS] J 10: 11.0164 31( 25) S-[GIL]-x(4)-R K 11: 10.5102 67( 25) L-x(1,3)-L-x(1,3)-R L 12: 10.5102 42( 25) I-x(1,3)-R-x(1,3)-T M 13: 10.0814 38( 25) R-x(3,4)-G-[AGIL] N 14: 9.7051 43( 25) L-x(2,3)-E-x-[DENQT] O 15: 8.3401 44( 25) R-x-S P 16: 8.3401 53( 25) R-x(2)-L Q 17: 8.3401 44( 25) T-x(2)-Q R 18: 7.8401 69( 25) R-x(1,2)-I S 19: 7.8401 78( 25) R-x(0,1)-I T 20: 7.8401 68( 25) R-x(4,5)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 21.7575 25( 25) Y-x-R-x-S-[ST]-x(2)-Q-[ADNST] Occurences: 25(25) BIN3_STAAU : 5- 14: miig YaRvSSldQN lerql BINL_STAAU : 5- 14: mkig YaRvSTglQN lnlqe BINR_STAAU : 5- 14: mkig YaRvSTglQN lnlqe CISA_BACSU : 5- 14: miai YvRvSTeeQA ikgss DNIV_BPMU : 4- 13: lig YvRvSTndQN tdlqr DNIV_BPP1 : 5- 14: mlig YvRvSTneQN talqr DNIV_BPP7 : 5- 14: mlig YvRvSTneQN talqr DNIV_ECOLI : 5- 14: mlig YvRvSTndQN tdlqr DNIV_SALAE : 6- 15: matig YiRvSTidQN idlqr DNIV_SALTY : 6- 15: matig YiRvSTidQN idlqr PAA4_ECOLI : 19- 28: kvari YlRaSTdeQN lerqe RES4_ECOLI : 6- 15: mrlfg YaRvSTsqQS ldiqi RESP_CLOPE : 5- 14: mlvg YaRvSTeeQS lnrqi TNP0_ECOLI : 7- 16: srvfa YcRvSTleQT tenqr TNP1_ECOLI : 6- 15: mrlfg YaRvSTsqQS ldiqv TNP2_ECOLI : 8- 17: gqrig YiRvSTfdQN perql TNP3_ECOLI : 6- 15: mrifg YaRvSTsqQS ldiqi TNP4_KLEPN : 6- 15: mrifg YaRvSTsqQS ldiqi TNP5_PSEAE : 8- 17: ghrig YvRvSSfdQN perql TNP6_ENTFC : 6- 15: mrkig YiRvSStnQN psrqf TNP7_ECOLI : 8- 17: ghrig YvRvSSfdQN perql TNP7_ENTFA : 5- 14: mifg YaRvSTddQN lslqi TNPT_PSEPU : 6- 15: mrlfg YaRvSTsqQS ldvqi UVP1_ECOLI : 5- 14: miig YaRkSThlQD vthqv YIM3_BPPH1 : 15- 24: knvgi YvRvSTeeQA kegys B 2: 17.5874 25( 25) R-x-S-[ST]-x(2)-Q-[ADNST] Occurences: 25(25) BIN3_STAAU : 7- 14: iigya RvSSldQN lerql BINL_STAAU : 7- 14: kigya RvSTglQN lnlqe BINR_STAAU : 7- 14: kigya RvSTglQN lnlqe CISA_BACSU : 7- 14: iaiyv RvSTeeQA ikgss DNIV_BPMU : 6- 13: ligyv RvSTndQN tdlqr DNIV_BPP1 : 7- 14: ligyv RvSTneQN talqr DNIV_BPP7 : 7- 14: ligyv RvSTneQN talqr DNIV_ECOLI : 7- 14: ligyv RvSTndQN tdlqr DNIV_SALAE : 8- 15: tigyi RvSTidQN idlqr DNIV_SALTY : 8- 15: tigyi RvSTidQN idlqr PAA4_ECOLI : 21- 28: ariyl RaSTdeQN lerqe RES4_ECOLI : 8- 15: lfgya RvSTsqQS ldiqi RESP_CLOPE : 7- 14: lvgya RvSTeeQS lnrqi TNP0_ECOLI : 9- 16: vfayc RvSTleQT tenqr TNP1_ECOLI : 8- 15: lfgya RvSTsqQS ldiqv TNP2_ECOLI : 10- 17: rigyi RvSTfdQN perql TNP3_ECOLI : 8- 15: ifgya RvSTsqQS ldiqi TNP4_KLEPN : 8- 15: ifgya RvSTsqQS ldiqi TNP5_PSEAE : 10- 17: rigyv RvSSfdQN perql TNP6_ENTFC : 8- 15: kigyi RvSStnQN psrqf TNP7_ECOLI : 10- 17: rigyv RvSSfdQN perql TNP7_ENTFA : 7- 14: ifgya RvSTddQN lslqi TNPT_PSEPU : 8- 15: lfgya RvSTsqQS ldvqi UVP1_ECOLI : 7- 14: iigya RkSThlQD vthqv YIM3_BPPH1 : 17- 24: vgiyv RvSTeeQA kegys C 3: 14.4120 25( 25) R-x-S-x(3)-Q-[ADNST] Occurences: 25(25) BIN3_STAAU : 7- 14: iigya RvSsldQN lerql BINL_STAAU : 7- 14: kigya RvStglQN lnlqe BINR_STAAU : 7- 14: kigya RvStglQN lnlqe CISA_BACSU : 7- 14: iaiyv RvSteeQA ikgss DNIV_BPMU : 6- 13: ligyv RvStndQN tdlqr DNIV_BPP1 : 7- 14: ligyv RvStneQN talqr DNIV_BPP7 : 7- 14: ligyv RvStneQN talqr DNIV_ECOLI : 7- 14: ligyv RvStndQN tdlqr DNIV_SALAE : 8- 15: tigyi RvStidQN idlqr DNIV_SALTY : 8- 15: tigyi RvStidQN idlqr PAA4_ECOLI : 21- 28: ariyl RaStdeQN lerqe RES4_ECOLI : 8- 15: lfgya RvStsqQS ldiqi RESP_CLOPE : 7- 14: lvgya RvSteeQS lnrqi TNP0_ECOLI : 9- 16: vfayc RvStleQT tenqr TNP1_ECOLI : 8- 15: lfgya RvStsqQS ldiqv TNP2_ECOLI : 10- 17: rigyi RvStfdQN perql TNP3_ECOLI : 8- 15: ifgya RvStsqQS ldiqi TNP4_KLEPN : 8- 15: ifgya RvStsqQS ldiqi TNP5_PSEAE : 10- 17: rigyv RvSsfdQN perql TNP6_ENTFC : 8- 15: kigyi RvSstnQN psrqf TNP7_ECOLI : 10- 17: rigyv RvSsfdQN perql TNP7_ENTFA : 7- 14: ifgya RvStddQN lslqi TNPT_PSEPU : 8- 15: lfgya RvStsqQS ldvqi UVP1_ECOLI : 7- 14: iigya RkSthlQD vthqv YIM3_BPPH1 : 17- 24: vgiyv RvSteeQA kegys D 4: 13.4174 25( 25) S-[ST]-x(2)-Q-[ADNST] Occurences: 25(25) BIN3_STAAU : 9- 14: gyarv SSldQN lerql BINL_STAAU : 9- 14: gyarv STglQN lnlqe BINR_STAAU : 9- 14: gyarv STglQN lnlqe CISA_BACSU : 9- 14: iyvrv STeeQA ikgss DNIV_BPMU : 8- 13: gyvrv STndQN tdlqr DNIV_BPP1 : 9- 14: gyvrv STneQN talqr DNIV_BPP7 : 9- 14: gyvrv STneQN talqr DNIV_ECOLI : 9- 14: gyvrv STndQN tdlqr DNIV_SALAE : 10- 15: gyirv STidQN idlqr DNIV_SALTY : 10- 15: gyirv STidQN idlqr PAA4_ECOLI : 23- 28: iylra STdeQN lerqe RES4_ECOLI : 10- 15: gyarv STsqQS ldiqi RESP_CLOPE : 9- 14: gyarv STeeQS lnrqi TNP0_ECOLI : 11- 16: aycrv STleQT tenqr TNP1_ECOLI : 10- 15: gyarv STsqQS ldiqv TNP2_ECOLI : 12- 17: gyirv STfdQN perql TNP3_ECOLI : 10- 15: gyarv STsqQS ldiqi TNP4_KLEPN : 10- 15: gyarv STsqQS ldiqi TNP5_PSEAE : 12- 17: gyvrv SSfdQN perql TNP6_ENTFC : 10- 15: gyirv SStnQN psrqf TNP7_ECOLI : 12- 17: gyvrv SSfdQN perql TNP7_ENTFA : 9- 14: gyarv STddQN lslqi TNPT_PSEPU : 10- 15: gyarv STsqQS ldvqi UVP1_ECOLI : 9- 14: gyark SThlQD vthqv YIM3_BPPH1 : 19- 24: iyvrv STeeQA kegys E 5: 13.1806 25( 25) R-V-x-[AGST]-x(3)-[ANS] Occurences: 25(25) BIN3_STAAU : 7- 14: iigya RVsSldqN lerql BINL_STAAU : 7- 14: kigya RVsTglqN lnlqe BINR_STAAU : 7- 14: kigya RVsTglqN lnlqe CISA_BACSU : 7- 14: iaiyv RVsTeeqA ikgss DNIV_BPMU : 6- 13: ligyv RVsTndqN tdlqr DNIV_BPP1 : 7- 14: ligyv RVsTneqN talqr DNIV_BPP7 : 7- 14: ligyv RVsTneqN talqr DNIV_ECOLI : 7- 14: ligyv RVsTndqN tdlqr DNIV_SALAE : 8- 15: tigyi RVsTidqN idlqr DNIV_SALTY : 8- 15: tigyi RVsTidqN idlqr PAA4_ECOLI : 208- 215: psqvk RVwAawnA qqqk RES4_ECOLI : 8- 15: lfgya RVsTsqqS ldiqi RESP_CLOPE : 7- 14: lvgya RVsTeeqS lnrqi TNP0_ECOLI : 186- 193: rqtil RVkAgqqS s TNP1_ECOLI : 8- 15: lfgya RVsTsqqS ldiqv TNP2_ECOLI : 10- 17: rigyi RVsTfdqN perql TNP3_ECOLI : 8- 15: ifgya RVsTsqqS ldiqi TNP4_KLEPN : 8- 15: ifgya RVsTsqqS ldiqi TNP5_PSEAE : 10- 17: rigyv RVsSfdqN perql TNP6_ENTFC : 8- 15: kigyi RVsStnqN psrqf TNP7_ECOLI : 10- 17: rigyv RVsSfdqN perql TNP7_ENTFA : 7- 14: ifgya RVsTddqN lslqi TNPT_PSEPU : 8- 15: lfgya RVsTsqqS ldvqi UVP1_ECOLI : 141- 148: ararg RVgGrkpS lsedd YIM3_BPPH1 : 17- 24: vgiyv RVsTeeqA kegys F 6: 12.6600 25( 25) Y-x(2,3)-S-x(1,3)-Q-[ADNQST] Occurences: 25(25) BIN3_STAAU : 5- 14: miig YarvSsldQN lerql BINL_STAAU : 5- 14: mkig YarvStglQN lnlqe BINR_STAAU : 5- 14: mkig YarvStglQN lnlqe CISA_BACSU : 5- 14: miai YvrvSteeQA ikgss DNIV_BPMU : 4- 13: lig YvrvStndQN tdlqr DNIV_BPP1 : 5- 14: mlig YvrvStneQN talqr DNIV_BPP7 : 5- 14: mlig YvrvStneQN talqr DNIV_ECOLI : 5- 14: mlig YvrvStndQN tdlqr DNIV_SALAE : 6- 15: matig YirvStidQN idlqr DNIV_SALTY : 6- 15: matig YirvStidQN idlqr PAA4_ECOLI : 19- 28: kvari YlraStdeQN lerqe RES4_ECOLI : 6- 14: mrlfg YarvSts-QQ sldiq RES4_ECOLI : 6- 15: mrlfg YarvStsqQS ldiqi RESP_CLOPE : 5- 14: mlvg YarvSteeQS lnrqi TNP0_ECOLI : 7- 16: srvfa YcrvStleQT tenqr TNP1_ECOLI : 6- 14: mrlfg YarvSts-QQ sldiq TNP1_ECOLI : 6- 15: mrlfg YarvStsqQS ldiqv TNP2_ECOLI : 8- 17: gqrig YirvStfdQN perql TNP3_ECOLI : 6- 14: mrifg YarvSts-QQ sldiq TNP3_ECOLI : 6- 15: mrifg YarvStsqQS ldiqi TNP4_KLEPN : 6- 14: mrifg YarvSts-QQ sldiq TNP4_KLEPN : 6- 15: mrifg YarvStsqQS ldiqi TNP5_PSEAE : 8- 17: ghrig YvrvSsfdQN perql TNP6_ENTFC : 6- 15: mrkig YirvSstnQN psrqf TNP7_ECOLI : 8- 17: ghrig YvrvSsfdQN perql TNP7_ENTFA : 5- 14: mifg YarvStddQN lslqi TNPT_PSEPU : 6- 14: mrlfg YarvSts-QQ sldvq TNPT_PSEPU : 6- 15: mrlfg YarvStsqQS ldvqi UVP1_ECOLI : 5- 14: miig YarkSthlQD vthqv YIM3_BPPH1 : 15- 24: knvgi YvrvSteeQA kegys G 7: 12.6490 25( 25) R-x(0,2)-V-x(0,1)-S-x(2)-[ADEQST] Occurences: 25(25) BIN3_STAAU : 7- 12: iigya R--V-SslD qnler BIN3_STAAU : 7- 13: iigya R--VsSldQ nlerq BINL_STAAU : 83- 89: nelne Rg-V-SfhS leeni BINR_STAAU : 83- 89: nelnn Rg-V-SfhS leeni CISA_BACSU : 7- 12: iaiyv R--V-SteE qaikg DNIV_BPMU : 6- 11: ligyv R--V-StnD qntdl DNIV_BPP1 : 7- 12: ligyv R--V-StnE qntal DNIV_BPP7 : 7- 12: ligyv R--V-StnE qntal DNIV_ECOLI : 7- 12: ligyv R--V-StnD qntdl DNIV_SALAE : 8- 13: tigyi R--V-StiD qnidl DNIV_SALTY : 8- 13: tigyi R--V-StiD qnidl PAA4_ECOLI : 95- 102: laeae Rl-VaSirA kgakl RES4_ECOLI : 8- 13: lfgya R--V-StsQ qsldi RESP_CLOPE : 7- 12: lvgya R--V-SteE qslnr TNP0_ECOLI : 9- 14: vfayc R--V-StlE qtten TNP1_ECOLI : 8- 13: lfgya R--V-StsQ qsldi TNP2_ECOLI : 10- 15: rigyi R--V-StfD qnper TNP3_ECOLI : 8- 13: ifgya R--V-StsQ qsldi TNP4_KLEPN : 8- 13: ifgya R--V-StsQ qsldi TNP5_PSEAE : 10- 15: rigyv R--V-SsfD qnper TNP5_PSEAE : 10- 16: rigyv R--VsSfdQ nperq TNP6_ENTFC : 8- 14: kigyi R--VsStnQ npsrq TNP7_ECOLI : 10- 15: rigyv R--V-SsfD qnper TNP7_ECOLI : 10- 16: rigyv R--VsSfdQ nperq TNP7_ENTFA : 7- 12: ifgya R--V-StdD qnlsl TNPT_PSEPU : 8- 13: lfgya R--V-StsQ qsldv UVP1_ECOLI : 174- 181: gavak RfnV-SrmT iyryt YIM3_BPPH1 : 17- 22: vgiyv R--V-SteE qakeg H 8: 12.4328 28( 25) G-x(2,4)-R-x(1,3)-S-x(3)-[ADENQ] Occurences: 28(25) BIN3_STAAU : 4- 13: mii Gya--Rv--SsldQ nlerq BIN3_STAAU : 4- 14: mii Gya--Rvs-SldqN lerql BINL_STAAU : 4- 13: mki Gya--Rv--StglQ nlnlq BINR_STAAU : 4- 13: mki Gya--Rv--StglQ nlnlq CISA_BACSU : 314- 323: gntmt Gkk--Rk--ShgkD yyvyt DNIV_BPMU : 3- 12: li Gyv--Rv--StndQ ntdlq DNIV_BPP1 : 4- 13: mli Gyv--Rv--StneQ ntalq DNIV_BPP7 : 4- 13: mli Gyv--Rv--StneQ ntalq DNIV_ECOLI : 4- 13: mli Gyv--Rv--StndQ ntdlq DNIV_SALAE : 5- 14: mati Gyi--Rv--StidQ nidlq DNIV_SALTY : 5- 14: mati Gyi--Rv--StidQ nidlq PAA4_ECOLI : 48- 59: gyyva Giy--RekaSgarA drpel RES4_ECOLI : 5- 14: mrlf Gya--Rv--StsqQ sldiq RESP_CLOPE : 4- 13: mlv Gya--Rv--SteeQ slnrq RESP_CLOPE : 139- 150: sakar GrnggRp--SkrnD kadtv TNP0_ECOLI : 143- 154: rakat GkrfgRp--SalnE eqqlt TNP1_ECOLI : 5- 14: mrlf Gya--Rv--StsqQ sldiq TNP2_ECOLI : 7- 16: tgqri Gyi--Rv--StfdQ nperq TNP2_ECOLI : 137- 149: lakqr GayrgRkk-SlssE riael TNP3_ECOLI : 5- 14: mrif Gya--Rv--StsqQ sldiq TNP4_KLEPN : 5- 14: mrif Gya--Rv--StsqQ sldiq TNP5_PSEAE : 7- 16: qghri Gyv--Rv--SsfdQ nperq TNP5_PSEAE : 7- 17: qghri Gyv--Rvs-SfdqN perql TNP6_ENTFC : 5- 14: mrki Gyi--Rv--SstnQ npsrq TNP6_ENTFC : 5- 15: mrki Gyi--Rvs-StnqN psrqf TNP7_ECOLI : 7- 16: qghri Gyv--Rv--SsfdQ nperq TNP7_ECOLI : 7- 17: qghri Gyv--Rvs-SfdqN perql TNP7_ENTFA : 4- 13: mif Gya--Rv--StddQ nlslq TNPT_PSEPU : 5- 14: mrlf Gya--Rv--StsqQ sldvq UVP1_ECOLI : 4- 13: mii Gya--Rk--SthlQ dvthq UVP1_ECOLI : 140- 152: aarar GrvggRkp-SlseD dinem YIM3_BPPH1 : 13- 23: tpknv Giyv-Rv--SteeQ akegy I 9: 11.9691 38( 25) L-x(0,1)-R-x-[AGIL]-x-[DNQRS] Occurences: 38(25) BIN3_STAAU : 15- 21: sldqn LeRqLeN lktfg BINL_STAAU : 63- 69: ivvwr LdRlGrN medli BINR_STAAU : 63- 69: ivvwr LdRlGrN madli CISA_BACSU : 49- 55: fsgel LeRpAlN rlred CISA_BACSU : 77- 83: ydpdr LsRkLmN qliid DNIV_BPMU : 44- 50: tdrpg LkRdLkR lqkgd DNIV_BPMU : 62- 68: lvvwk LdRlGrS mkhli DNIV_BPP1 : 49- 54: glkkv L-RmLsR gdtlv DNIV_BPP1 : 63- 69: lvvwk LdRlGrS mrhlv DNIV_BPP7 : 49- 54: glkkv L-RmLsR gdtlv DNIV_BPP7 : 63- 69: lvvwk LdRlGrS mrhlv DNIV_ECOLI : 17- 23: dqntd LqRnAlN cagce DNIV_ECOLI : 63- 69: lvvwk LdRlGrS mrhlv DNIV_SALAE : 64- 70: lvvwk LdRlGrS vknlv DNIV_SALTY : 64- 70: lvvwk LdRlGrS vknlv PAA4_ECOLI : 64- 70: adrpe LlRmIaD lqpge PAA4_ECOLI : 65- 70: drpel L-RmIaD lqpge PAA4_ECOLI : 185- 190: driit L-RsGgS siakt RES4_ECOLI : 66- 72: tlvkk LdRlGrD tadmi RESP_CLOPE : 119- 125: sglsq LeRdLiS qrtke TNP0_ECOLI : 71- 77: livtk LdRlGrN amdir TNP0_ECOLI : 74- 80: tkldr LgRnAmD irktv TNP1_ECOLI : 66- 72: ilvkk LdRlGrD tadmi TNP2_ECOLI : 66- 72: hsmdr LaRnLdD lrriv TNP2_ECOLI : 73- 78: rnldd L-RrIvQ tltqr TNP3_ECOLI : 66- 72: ilvkk LdRlGrD tadmi TNP4_KLEPN : 66- 72: ilvkk LdRlGrD tadmi TNP5_PSEAE : 66- 72: hsmdr LaRnLdD lrrlv TNP5_PSEAE : 73- 78: rnldd L-RrLvQ kltqr TNP6_ENTFC : 118- 124: agvnq LeRdLiR mrqre TNP7_ECOLI : 66- 72: hsmdr LaRnLdD lrrlv TNP7_ECOLI : 73- 78: rnldd L-RrLvQ kltqr TNP7_ENTFA : 51- 57: eemin LlReGdS vviyk TNP7_ENTFA : 52- 57: eminl L-ReGdS vviyk TNPT_PSEPU : 66- 72: vlvkk LdRlGrD tadmi TNPT_PSEPU : 120- 125: aqaer L-RiLeR tnegr UVP1_ECOLI : 68- 74: lvvwa LdRlGgS lsqvi YIM3_BPPH1 : 71- 76: slelm L-RhIeQ gimth J 10: 11.0164 31( 25) S-[GIL]-x(4)-R Occurences: 31(25) BIN3_STAAU : 63- 69: rfive SIdrlgR nynev BINL_STAAU : 36- 42: fsdhi SGskskR pgldk BINR_STAAU : 36- 42: fsdhi SGakskR pgldr CISA_BACSU : 45- 51: adegf SGelleR palnr DNIV_BPMU : 35- 41: fedkl SGtrtdR pglkr DNIV_BPMU : 74- 80: mkhli SLvgelR ergin DNIV_BPP1 : 36- 42: fedka SGkkaeR pglkk DNIV_BPP7 : 36- 42: fedka SGkqteR pglkk DNIV_ECOLI : 36- 42: fedki SGtkseR pglkk DNIV_SALAE : 37- 43: fedri SGkianR pglkr DNIV_SALTY : 37- 43: fedri SGkianR pglkr PAA4_ECOLI : 34- 40: lerqe SLvaatR aagyy PAA4_ECOLI : 55- 61: yreka SGaradR pellr RES4_ECOLI : 39- 45: ftdka SGsstdR kgldl RESP_CLOPE : 38- 44: yqeki SGmkpnR eqldk TNP0_ECOLI : 169- 175: inagi SIsaiaR efntt TNP1_ECOLI : 15- 21: stsqq SLdiqvR alkda TNP1_ECOLI : 39- 45: ftdka SGsssdR kgldl TNP2_ECOLI : 36- 42: fsdka SGkdvkR pqlea TNP3_ECOLI : 15- 21: stsqq SLdiqiR alkda TNP3_ECOLI : 39- 45: ftdka SGsstdR egldl TNP4_KLEPN : 15- 21: stsqq SLdiqiR avkda TNP4_KLEPN : 39- 45: ftdka SGsstdR egldl TNP5_PSEAE : 36- 42: ftdka SGkdtqR pqlea TNP6_ENTFC : 37- 43: yeekv SGatkdR eqlqk TNP7_ECOLI : 36- 42: ftdka SGkdtqR pqlea TNP7_ENTFA : 110- 116: frvma SLaeleR diiie TNP7_ENTFA : 125- 131: iertn SGlkaaR vrgkk TNPT_PSEPU : 39- 45: ftdkv SGshvnR eglrm UVP1_ECOLI : 131- 137: iertr SGlaaaR argrv YIM3_BPPH1 : 66- 72: dihrp SLelmlR hieqg K 11: 10.5102 67( 25) L-x(1,3)-L-x(1,3)-R Occurences: 67(25) BIN3_STAAU : 11- 17: arvss LdqnLe--R qlenl BIN3_STAAU : 46- 54: enrpi LqkaLnfvR mgdrf BINL_STAAU : 15- 21: tglqn Ln--LqedR lnayg BINL_STAAU : 63- 68: ivvwr Ldr-Lg--R nmedl BINL_STAAU : 76- 83: edlit LvneLne-R gvsfh BINL_STAAU : 120- 124: efern Li--Le--R ssagr BINR_STAAU : 15- 21: tglqn Ln--LqedR lnqyg BINR_STAAU : 63- 68: ivvwr Ldr-Lg--R nmadl BINR_STAAU : 76- 83: adlit LvneLnn-R gvsfh BINR_STAAU : 120- 124: efern Li--Le--R ssagr CISA_BACSU : 298- 304: sphny LlsgLv--R cgkcg CISA_BACSU : 299- 304: phnyl Lsg-Lv--R cgkcg DNIV_BPMU : 44- 50: tdrpg LkrdLk--R lqkgd DNIV_BPMU : 62- 67: lvvwk Ldr-Lg--R smkhl DNIV_BPMU : 75- 82: khlis LvgeLre-R ginfr DNIV_BPP1 : 49- 54: glkkv Lrm-Ls--R gdtlv DNIV_BPP1 : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_BPP1 : 76- 83: rhlvv LveeLrd-R ginfr DNIV_BPP7 : 49- 54: glkkv Lrm-Ls--R gdtlv DNIV_BPP7 : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_BPP7 : 76- 83: rhlvv LveeLrd-R ginfr DNIV_ECOLI : 45- 50: serpg Lkk-Ll--R tlsag DNIV_ECOLI : 63- 68: lvvwk Ldr-Lg--R smrhl DNIV_ECOLI : 76- 83: rhlvv LveeLre-R ginfr DNIV_SALAE : 64- 69: lvvwk Ldr-Lg--R svknl DNIV_SALAE : 77- 84: knlva LiseLhe-R gahfh DNIV_SALAE : 125- 132: ivert Lag-LaaaR aqgrl DNIV_SALTY : 64- 69: lvvwk Ldr-Lg--R svknl DNIV_SALTY : 77- 84: knlva LiseLhe-R gahfh DNIV_SALTY : 125- 132: ivert Lag-LaaaR aqgrl PAA4_ECOLI : 138- 146: vqdml LklaLqmaR ddyed PAA4_ECOLI : 140- 146: dmllk La--LqmaR ddyed RES4_ECOLI : 48- 52: tdrkg Ld--Ll--R mkvee RES4_ECOLI : 62- 68: egdvt LvkkLd--R lgrdt RES4_ECOLI : 66- 71: tlvkk Ldr-Lg--R dtadm RESP_CLOPE : 116- 121: tvmsg Lsq-Le--R dlisq RESP_CLOPE : 119- 127: sglsq LerdLisqR tkegl TNP0_ECOLI : 71- 76: livtk Ldr-Lg--R namdi TNP0_ECOLI : 127- 131: eferd Ll--Le--R thsgi TNP1_ECOLI : 48- 52: sdrkg Ld--Ll--R mkvee TNP1_ECOLI : 62- 68: egdvi LvkkLd--R lgrdt TNP1_ECOLI : 66- 71: ilvkk Ldr-Lg--R dtadm TNP2_ECOLI : 66- 74: hsmdr LarnLddlR rivqt TNP2_ECOLI : 70- 75: rlarn Ldd-Lr--R ivqtl TNP3_ECOLI : 48- 52: tdreg Ld--Ll--R mkvee TNP3_ECOLI : 62- 68: egdvi LvkkLd--R lgrdt TNP3_ECOLI : 66- 71: ilvkk Ldr-Lg--R dtadm TNP4_KLEPN : 48- 52: tdreg Ld--Ll--R mkvee TNP4_KLEPN : 62- 68: egdvi LvkkLd--R lgrdt TNP4_KLEPN : 66- 71: ilvkk Ldr-Lg--R dtadm TNP5_PSEAE : 45- 53: tqrpq LealLsfvR egdtv TNP5_PSEAE : 66- 74: hsmdr LarnLddlR rlvqk TNP5_PSEAE : 70- 75: rlarn Ldd-Lr--R lvqkl TNP5_PSEAE : 76- 83: ddlrr LvqkLtq-R gvrie TNP6_ENTFC : 118- 124: agvnq LerdLi--R mrqre TNP6_ENTFC : 118- 126: agvnq LerdLirmR qregi TNP7_ECOLI : 45- 53: tqrpq LealLsfvR egdtv TNP7_ECOLI : 66- 74: hsmdr LarnLddlR rlvqk TNP7_ECOLI : 70- 75: rlarn Ldd-Lr--R lvqkl TNP7_ECOLI : 76- 83: ddlrr LvqkLtq-R gvrie TNP7_ENTFA : 111- 116: rvmas Lae-Le--R diiie TNPT_PSEPU : 62- 68: egdvv LvkkLd--R lgrdt TNPT_PSEPU : 66- 71: vlvkk Ldr-Lg--R dtadm TNPT_PSEPU : 120- 125: aqaer Lri-Le--R tnegr UVP1_ECOLI : 50- 58: ngape LencLkalR egdtl UVP1_ECOLI : 81- 88: sqvit LlddLkk-R gitfi UVP1_ECOLI : 82- 88: qvitl Ldd-Lkk-R gitfi YIM3_BPPH1 : 67- 72: ihrps Le--Lml-R hieqg L 12: 10.5102 42( 25) I-x(1,3)-R-x(1,3)-T Occurences: 42(25) BIN3_STAAU : 187- 191: akevn It--Rq--T vyrik BINL_STAAU : 3- 10: mk IgyaRvs-T glqnl BINL_STAAU : 49- 57: gldka IefaRsgdT ivvwr BINR_STAAU : 3- 10: mk IgyaRvs-T glqnl BINR_STAAU : 49- 57: gldra IefaRsgdT ivvwr CISA_BACSU : 4- 10: mia Iyv-Rvs-T eeqai DNIV_BPMU : 2- 9: l IgyvRvs-T ndqnt DNIV_BPMU : 84- 90: lrerg Inf-Rsl-T dsidt DNIV_BPP1 : 3- 10: ml IgyvRvs-T neqnt DNIV_BPP1 : 85- 91: lrdrg Inf-Rsl-T dsidt DNIV_BPP7 : 3- 10: ml IgyvRvs-T neqnt DNIV_BPP7 : 85- 91: lrdrg Inf-Rsl-T dsidt DNIV_ECOLI : 3- 10: ml IgyvRvs-T ndqnt DNIV_ECOLI : 85- 91: lrerg Inf-Rsl-T dsidt DNIV_ECOLI : 136- 144: raqgr IggrRpklT peqwa DNIV_SALAE : 4- 11: mat IgyiRvs-T idqni DNIV_SALAE : 16- 24: tidqn IdlqRnalT sancd DNIV_SALTY : 4- 11: mat IgyiRvs-T idqni DNIV_SALTY : 16- 24: tidqn IdlqRnalT sancd PAA4_ECOLI : 18- 24: lkvar Iyl-Ras-T deqnl RES4_ECOLI : 170- 174: arrls Ia--Rs--T vykil RESP_CLOPE : 68- 72: tdltr Is--Rs--T kdlln TNP0_ECOLI : 136- 142: rthsg Ia--RakaT gkrfg TNP0_ECOLI : 173- 179: isisa Ia--RefnT trqti TNP1_ECOLI : 170- 174: sktmn Ia--Rs--T vykvi TNP2_ECOLI : 6- 13: mtgqr IgyiRvs-T fdqnp TNP2_ECOLI : 49- 57: qleal IsfaRtgdT vvvhs TNP2_ECOLI : 173- 177: arefg Is--Re--T lyqyl TNP3_ECOLI : 138- 145: aklkg IkfgRrr-T vdrnv TNP3_ECOLI : 170- 174: ahqls Ia--Rs--T vykil TNP4_KLEPN : 138- 145: aklkg IkfgRrr-T vdrnv TNP4_KLEPN : 170- 174: ahqls Ia--Rs--T vykil TNP5_PSEAE : 173- 177: arefn Is--Re--T lyqyl TNP6_ENTFC : 4- 12: mrk IgyiRvssT nqnps TNP6_ENTFC : 67- 71: tdltr It--Rs--T qdlfe TNP7_ECOLI : 173- 177: arefn Is--Re--T lyqyl TNP7_ENTFA : 66- 70: ykldr Is--Rs--T khlie TNPT_PSEPU : 170- 174: akrlk Ig--Rs--T vykvl UVP1_ECOLI : 3- 10: mi IgyaRks-T hlqdv UVP1_ECOLI : 95- 101: itfia Ikd-Rid-T sapvi UVP1_ECOLI : 182- 186: vsrmt Iy--Ry--T tkgnh UVP1_ECOLI : 182- 187: vsrmt Iy--Ryt-T kgnhs YIM3_BPPH1 : 14- 20: pknvg Iyv-Rvs-T eeqak M 13: 10.0814 38( 25) R-x(3,4)-G-[AGIL] Occurences: 38(25) BIN3_STAAU : 130- 136: rnesk RrqaqGI qvake BIN3_STAAU : 131- 136: neskr Rqaq-GI qvake BINL_STAAU : 7- 12: kigya Rvst-GL qnlnl BINL_STAAU : 135- 140: iaara Rgry-GG rpekl BINR_STAAU : 7- 12: kigya Rvst-GL qnlnl BINR_STAAU : 135- 140: iaara Rgry-GG rpekl CISA_BACSU : 330- 336: yvytc RknysGA kdrgc DNIV_BPMU : 38- 44: klsgt RtdrpGL krdlk DNIV_BPMU : 121- 126: eliie Rtma-GL aaarn DNIV_BPMU : 152- 158: weqag RllaqGI prkqv DNIV_BPP1 : 122- 127: elive Rtra-GL daara DNIV_BPP1 : 153- 159: wqqmr RllekGI prkqv DNIV_BPP7 : 122- 127: elive Rtra-GL daara DNIV_BPP7 : 153- 159: wqqmr RllenGI prkqv DNIV_ECOLI : 122- 127: elive Rtka-GL etara DNIV_SALAE : 123- 128: elive Rtla-GL aaara DNIV_SALTY : 123- 128: elive Rtla-GL aaara PAA4_ECOLI : 51- 57: vagiy RekasGA radrp RES4_ECOLI : 91- 97: qgvav RfiddGI stdge RESP_CLOPE : 81- 87: lniid RikakGA siksi RESP_CLOPE : 127- 132: dlisq Rtke-GL ksaka RESP_CLOPE : 138- 143: ksaka Rgrn-GG rpskr TNP0_ECOLI : 131- 136: dllle Rths-GI araka TNP0_ECOLI : 163- 168: ltvia Rina-GI sisai TNP1_ECOLI : 91- 97: qgvsi RfiddGI stdge TNP2_ECOLI : 125- 130: alire Rqre-GI alakq TNP3_ECOLI : 91- 97: qgvav RfiddGI stdgd TNP4_KLEPN : 91- 97: qgvav RfiddGI stdgd TNP5_PSEAE : 125- 130: alire Rqre-GI tlakq TNP6_ENTFC : 126- 131: dlirm Rqre-GI elakk TNP7_ECOLI : 125- 130: alire Rqre-GI alakq TNP7_ENTFA : 122- 127: diiie Rtns-GL kaarv TNP7_ENTFA : 133- 138: kaarv Rgkk-GG rpskg TNPT_PSEPU : 91- 97: mgvai RflddGI stegt UVP1_ECOLI : 42- 47: rggsk Rakn-GA pelen UVP1_ECOLI : 128- 133: nrnie Rtrs-GL aaara UVP1_ECOLI : 139- 144: aaara Rgrv-GG rkpsl YIM3_BPPH1 : 72- 78: lelml RhieqGI mthc N 14: 9.7051 43( 25) L-x(2,3)-E-x-[DENQT] Occurences: 43(25) BIN3_STAAU : 81- 87: htvny LkdkEvQ lmits BINL_STAAU : 76- 81: edlit Lvn-ElN ergvs BINL_STAAU : 184- 190: rylnk LeekEdE kqgev BINR_STAAU : 76- 81: adlit Lvn-ElN nrgvs CISA_BACSU : 164- 170: kekrt LeilEeE akiir CISA_BACSU : 380- 385: eqsnh Lsd-ElE lieke CISA_BACSU : 384- 390: hlsde LeliEkE iektk CISA_BACSU : 386- 392: sdele LiekEiE ktkkg DNIV_BPMU : 110- 116: hvmga LaemErE liier DNIV_BPMU : 117- 122: emere Lii-ErT magla DNIV_BPMU : 142- 148: grppk LtkaEwE qagrl DNIV_BPP1 : 111- 117: hvmga LaemErE liver DNIV_BPP1 : 118- 123: emere Liv-ErT ragld DNIV_BPP7 : 111- 117: hvmga LaemErE liver DNIV_BPP7 : 118- 123: emere Liv-ErT ragld DNIV_ECOLI : 111- 117: hvmga LaemErE liver DNIV_ECOLI : 118- 123: emere Liv-ErT kagle DNIV_SALAE : 119- 124: emere Liv-ErT lagla DNIV_SALTY : 112- 118: hvmsa LaemErE liver DNIV_SALTY : 119- 124: emere Liv-ErT lagla PAA4_ECOLI : 88- 94: drisr LplaEaE rlvas PAA4_ECOLI : 118- 123: vdlse Laa-EaN gvaki RES4_ECOLI : 79- 84: admiq Ltk-EfD aqgva RESP_CLOPE : 116- 122: tvmsg LsqlErD lisqr TNP0_ECOLI : 127- 132: eferd Lll-ErT hsgia TNP0_ECOLI : 152- 157: grpsa Lne-EqQ ltvia TNP1_ECOLI : 79- 84: admiq Lik-EfD aqgvs TNP2_ECOLI : 121- 126: efera Lir-ErQ regia TNP3_ECOLI : 79- 84: admiq Lik-EfD aqgva TNP4_KLEPN : 79- 84: admiq Lik-EfD aqgva TNP5_PSEAE : 121- 126: efera Lir-ErQ regit TNP5_PSEAE : 167- 172: epkaq Lar-EfN isret TNP6_ENTFC : 96- 102: lkdtw LdlsEdN pysqf TNP6_ENTFC : 160- 165: nyavk Lyk-EgN mtvnq TNP7_ECOLI : 121- 126: efera Lir-ErQ regia TNP7_ECOLI : 167- 172: epkaq Lar-EfN isret TNP7_ENTFA : 51- 56: eemin Llr-EgD svviy TNP7_ENTFA : 111- 117: rvmas LaelErD iiier TNPT_PSEPU : 53- 59: lrmlr LkveEgD vvlvk TNPT_PSEPU : 79- 84: admiq Lik-EfD dmgva TNPT_PSEPU : 120- 126: aqaer LrilErT negrl UVP1_ECOLI : 161- 167: emkil LadpEmT vgava YIM3_BPPH1 : 3- 8: mn Lmd-EnT pknvg O 15: 8.3401 44( 25) R-x-S Occurences: 44(25) BIN3_STAAU : 7- 9: iigya RvS sldqn BINL_STAAU : 7- 9: kigya RvS tglqn BINL_STAAU : 124- 126: nlile RsS agria BINR_STAAU : 7- 9: kigya RvS tglqn BINR_STAAU : 124- 126: nlile RsS agria CISA_BACSU : 7- 9: iaiyv RvS teeqa CISA_BACSU : 76- 78: cydpd RlS rklmn CISA_BACSU : 132- 134: akike RtS sgrlq CISA_BACSU : 317- 319: mtgkk RkS hgkdy DNIV_BPMU : 6- 8: ligyv RvS tndqn DNIV_BPP1 : 7- 9: ligyv RvS tneqn DNIV_BPP7 : 7- 9: ligyv RvS tneqn DNIV_ECOLI : 7- 9: ligyv RvS tndqn DNIV_SALAE : 8- 10: tigyi RvS tidqn DNIV_SALAE : 35- 37: rifed RiS gkian DNIV_SALTY : 8- 10: tigyi RvS tidqn DNIV_SALTY : 35- 37: rifed RiS gkian PAA4_ECOLI : 21- 23: ariyl RaS tdeqn PAA4_ECOLI : 84- 86: aekid RiS rlpla RES4_ECOLI : 8- 10: lfgya RvS tsqqs RES4_ECOLI : 148- 150: kriid RnS vlalh RES4_ECOLI : 167- 169: tdiar RlS iarst RESP_CLOPE : 7- 9: lvgya RvS teeqs RESP_CLOPE : 67- 69: itdlt RiS rstkd RESP_CLOPE : 144- 146: grngg RpS krndk TNP0_ECOLI : 9- 11: vfayc RvS tleqt TNP0_ECOLI : 148- 150: gkrfg RpS alnee TNP1_ECOLI : 8- 10: lfgya RvS tsqqs TNP2_ECOLI : 10- 12: rigyi RvS tfdqn TNP3_ECOLI : 8- 10: ifgya RvS tsqqs TNP3_ECOLI : 183- 185: ilede RaS TNP4_KLEPN : 8- 10: ifgya RvS tsqqs TNP4_KLEPN : 183- 185: ilede RaS TNP5_PSEAE : 10- 12: rigyv RvS sfdqn TNP6_ENTFC : 8- 10: kigyi RvS stnqn TNP6_ENTFC : 179- 181: itnvs RaS lyrkl TNP7_ECOLI : 10- 12: rigyv RvS sfdqn TNP7_ENTFA : 7- 9: ifgya RvS tddqn TNP7_ENTFA : 65- 67: iykld RiS rstkh TNP7_ENTFA : 139- 141: gkkgg RpS kgkls TNPT_PSEPU : 8- 10: lfgya RvS tsqqs UVP1_ECOLI : 7- 9: iigya RkS thlqd YIM3_BPPH1 : 17- 19: vgiyv RvS teeqa YIM3_BPPH1 : 64- 66: akdih RpS lelml P 16: 8.3401 53( 25) R-x(2)-L Occurences: 53(25) BIN3_STAAU : 43- 46: ksien RpiL qkaln BIN3_STAAU : 148- 151: gvykg RplL yspna BINL_STAAU : 42- 45: gsksk RpgL dkaie BINR_STAAU : 42- 45: gaksk RpgL draie CISA_BACSU : 51- 54: gelle RpaL nrlre CISA_BACSU : 219- 222: hrqvv RqiL mnssy CISA_BACSU : 287- 290: lgqsk RkhL sisph CISA_BACSU : 398- 401: ktkkg RkrL ltlis DNIV_BPMU : 18- 21: ntdlq RnaL vcagc DNIV_BPMU : 41- 44: gtrtd RpgL krdlk DNIV_BPP1 : 19- 22: ntalq RnaL esagc DNIV_BPP1 : 42- 45: gkkae RpgL kkvlr DNIV_BPP1 : 124- 127: ivert RagL daara DNIV_BPP1 : 152- 155: twqqm RrlL ekgip DNIV_BPP7 : 19- 22: ntalq RnaL esagc DNIV_BPP7 : 42- 45: gkqte RpgL kkvlr DNIV_BPP7 : 124- 127: ivert RagL daara DNIV_BPP7 : 152- 155: twqqm RrlL engip DNIV_ECOLI : 19- 22: ntdlq RnaL ncagc DNIV_ECOLI : 42- 45: gtkse RpgL kkllr DNIV_ECOLI : 140- 143: riggr RpkL tpeqw DNIV_SALAE : 20- 23: nidlq RnaL tsanc DNIV_SALAE : 43- 46: gkian RpgL kralk DNIV_SALAE : 162- 165: ekghp RqqL aiifg DNIV_SALTY : 20- 23: nidlq RnaL tsanc DNIV_SALTY : 43- 46: gkian RpgL kralk DNIV_SALTY : 162- 165: ekghp RqqL aiifg PAA4_ECOLI : 17- 20: rlkva RiyL rastd PAA4_ECOLI : 61- 64: garad RpeL lrmia PAA4_ECOLI : 87- 90: idris RlpL aeaer RES4_ECOLI : 45- 48: gsstd RkgL dllrm RES4_ECOLI : 120- 123: aqaer RriL ertne RES4_ECOLI : 184- 187: ledes RvnL ski RESP_CLOPE : 44- 47: gmkpn ReqL dkmid TNP0_ECOLI : 125- 128: vaefe RdlL lerth TNP1_ECOLI : 45- 48: gsssd RkgL dllrm TNP2_ECOLI : 42- 45: gkdvk RpqL ealis TNP2_ECOLI : 175- 178: efgis RetL yqylr TNP3_ECOLI : 45- 48: gsstd RegL dllrm TNP3_ECOLI : 120- 123: aqaer RriL ertne TNP4_KLEPN : 45- 48: gsstd RegL dllrm TNP4_KLEPN : 120- 123: aqaer RriL ertne TNP5_PSEAE : 42- 45: gkdtq RpqL ealls TNP5_PSEAE : 175- 178: efnis RetL yqylr TNP6_ENTFC : 43- 46: gatkd ReqL qkvld TNP6_ENTFC : 179- 182: itnvs RasL yrkls TNP7_ECOLI : 42- 45: gkdtq RpqL ealls TNP7_ECOLI : 175- 178: efnis RetL yqylr TNP7_ENTFA : 42- 45: gakkd RpqL eemin TNP7_ENTFA : 162- 165: keysi RqiL daskl TNPT_PSEPU : 45- 48: gshvn RegL rmlrl UVP1_ECOLI : 130- 133: niert RsgL aaara YIM3_BPPH1 : 64- 67: akdih RpsL elmlr Q 17: 8.3401 44( 25) T-x(2)-Q Occurences: 44(25) BIN3_STAAU : 32- 35: aekif TekQ sgksi BINL_STAAU : 10- 13: yarvs TglQ nlnlq BINR_STAAU : 10- 13: yarvs TglQ nlnlq CISA_BACSU : 10- 13: yvrvs TeeQ aikgs CISA_BACSU : 363- 366: ifkfi TnpQ kyvsf DNIV_BPMU : 9- 12: yvrvs TndQ ntdlq DNIV_BPMU : 14- 17: tndqn TdlQ rnalv DNIV_BPP1 : 10- 13: yvrvs TneQ ntalq DNIV_BPP1 : 15- 18: tneqn TalQ rnale DNIV_BPP1 : 147- 150: kyqee TwqQ mrrll DNIV_BPP7 : 10- 13: yvrvs TneQ ntalq DNIV_BPP7 : 15- 18: tneqn TalQ rnale DNIV_BPP7 : 147- 150: kyqee TwqQ mrrll DNIV_ECOLI : 10- 13: yvrvs TndQ ntdlq DNIV_ECOLI : 15- 18: tndqn TdlQ rnaln DNIV_ECOLI : 144- 147: rrpkl TpeQ waqag DNIV_ECOLI : 159- 162: liaag TprQ kvaii DNIV_SALAE : 11- 14: yirvs TidQ nidlq DNIV_SALTY : 11- 14: yirvs TidQ nidlq PAA4_ECOLI : 3- 6: ma TreQ qpegr PAA4_ECOLI : 24- 27: ylras TdeQ nlerq RES4_ECOLI : 11- 14: yarvs TsqQ sldiq RESP_CLOPE : 10- 13: yarvs TeeQ slnrq TNP0_ECOLI : 12- 15: ycrvs TleQ ttenq TNP0_ECOLI : 17- 20: tleqt TenQ rreie TNP0_ECOLI : 84- 87: mdirk TveQ lassd TNP0_ECOLI : 179- 182: arefn TtrQ tilrv TNP1_ECOLI : 11- 14: yarvs TsqQ sldiq TNP2_ECOLI : 13- 16: yirvs TfdQ nperq TNP2_ECOLI : 79- 82: rrivq TltQ rgvhi TNP2_ECOLI : 177- 180: gisre TlyQ ylrtd TNP3_ECOLI : 11- 14: yarvs TsqQ sldiq TNP3_ECOLI : 153- 156: rnvvl TlhQ kgtga TNP4_KLEPN : 11- 14: yarvs TsqQ sldiq TNP4_KLEPN : 153- 156: rnvvl TlhQ kgtga TNP5_PSEAE : 153- 156: deqaa TlrQ ratag TNP5_PSEAE : 177- 180: nisre TlyQ ylrtd TNP6_ENTFC : 167- 170: kegnm TvnQ iceit TNP7_ECOLI : 153- 156: deqaa TlrQ ratag TNP7_ECOLI : 177- 180: nisre TlyQ ylrtd TNP7_ENTFA : 10- 13: yarvs TddQ nlslq TNPT_PSEPU : 11- 14: yarvs TsqQ sldvq UVP1_ECOLI : 10- 13: yarks ThlQ dvthq YIM3_BPPH1 : 20- 23: yvrvs TeeQ akegy R 18: 7.8401 69( 25) R-x(1,2)-I Occurences: 69(25) BIN3_STAAU : 43- 45: ksien Rp-I lqkal BIN3_STAAU : 58- 60: vrmgd Rf-I vesid BIN3_STAAU : 162- 164: kdpqk Rv-I yhrvv BINL_STAAU : 118- 121: faefe RnlI lerss BINL_STAAU : 174- 177: qwqvs RttI yryln BINR_STAAU : 47- 49: rpgld Ra-I efars BINR_STAAU : 118- 121: faefe RnlI lerss BINR_STAAU : 174- 177: qwkvs RttI yryln CISA_BACSU : 94- 96: delrk Rn-I plifv CISA_BACSU : 118- 121: lffam RgaI sefek CISA_BACSU : 175- 177: eakii Rm-I fnyft CISA_BACSU : 219- 221: hrqvv Rq-I lmnss CISA_BACSU : 458- 460: enalk Ra-I dyfqs DNIV_BPMU : 82- 84: gelre Rg-I nfrsl DNIV_BPMU : 115- 118: laeme RelI iertm DNIV_BPMU : 182- 185: khpak RahI enddr DNIV_BPP1 : 83- 85: eelrd Rg-I nfrsl DNIV_BPP1 : 116- 119: laeme RelI vertr DNIV_BPP7 : 83- 85: eelrd Rg-I nfrsl DNIV_BPP7 : 116- 119: laeme RelI vertr DNIV_ECOLI : 83- 85: eelre Rg-I nfrsl DNIV_ECOLI : 116- 119: laeme RelI vertk DNIV_ECOLI : 153- 155: waqag Rl-I aagtp DNIV_SALAE : 117- 120: paeme RelI vertl DNIV_SALAE : 142- 144: lgghp Ra-I nrheq DNIV_SALTY : 117- 120: laeme RelI vertl DNIV_SALTY : 142- 144: lggrp Ra-I nkheq PAA4_ECOLI : 66- 68: rpell Rm-I adlqp PAA4_ECOLI : 181- 183: agmhd Ri-I tlrsg RES4_ECOLI : 91- 93: qgvav Rf-I ddgis RES4_ECOLI : 119- 122: vaqae RrrI lertn RES4_ECOLI : 120- 122: aqaer Rr-I lertn RES4_ECOLI : 142- 145: girfg RkrI idrns RES4_ECOLI : 144- 146: rfgrk Ri-I drnsv RES4_ECOLI : 167- 170: tdiar RlsI arstv RESP_CLOPE : 17- 19: eqsln Rq-I dmlvd RESP_CLOPE : 30- 32: ygvdk Rn-I yqeki RESP_CLOPE : 121- 124: lsqle RdlI sqrtk TNP0_ECOLI : 21- 24: ttenq RreI eaagf TNP0_ECOLI : 22- 24: tenqr Re-I eaagf TNP0_ECOLI : 35- 37: airpq Rl-I eehis TNP0_ECOLI : 181- 184: efntt RqtI lrvka TNP1_ECOLI : 91- 93: qgvsi Rf-I ddgis TNP1_ECOLI : 119- 122: vaqae RqrI lertn TNP1_ECOLI : 144- 146: vfgrk Rk-I drdav TNP2_ECOLI : 74- 76: nlddl Rr-I vqtlt TNP2_ECOLI : 119- 122: faefe RalI rerqr TNP2_ECOLI : 127- 130: irerq RegI alakq TNP3_ECOLI : 91- 93: qgvav Rf-I ddgis TNP3_ECOLI : 119- 122: vaqae RrrI lertn TNP3_ECOLI : 120- 122: aqaer Rr-I lertn TNP4_KLEPN : 91- 93: qgvav Rf-I ddgis TNP4_KLEPN : 119- 122: vaqae RrrI lertn TNP4_KLEPN : 120- 122: aqaer Rr-I lertn TNP5_PSEAE : 119- 122: faefe RalI rerqr TNP5_PSEAE : 127- 130: irerq RegI tlakq TNP6_ENTFC : 2- 4: m Rk-I gyirv TNP6_ENTFC : 120- 123: vnqle RdlI rmrqr TNP6_ENTFC : 128- 131: irmrq RegI elakk TNP7_ECOLI : 119- 122: faefe RalI rerqr TNP7_ECOLI : 127- 130: irerq RegI alakq TNP7_ENTFA : 116- 118: laele Rd-I iiert TNP7_ENTFA : 116- 119: laele RdiI iertn TNP7_ENTFA : 162- 164: keysi Rq-I ldask TNPT_PSEPU : 119- 122: vaqae RlrI lertn TNPT_PSEPU : 167- 170: meiak RlkI grstv UVP1_ECOLI : 88- 90: ddlkk Rg-I tfiai UVP1_ECOLI : 124- 126: nfern Rn-I ertrs UVP1_ECOLI : 179- 182: rfnvs RmtI yrytt YIM3_BPPH1 : 72- 74: lelml Rh-I eqgim S 19: 7.8401 78( 25) R-x(0,1)-I Occurences: 78(25) BIN3_STAAU : 43- 45: ksien RpI lqkal BIN3_STAAU : 58- 60: vrmgd RfI vesid BIN3_STAAU : 162- 164: kdpqk RvI yhrvv BIN3_STAAU : 194- 195: rqtvy R-I khdng BINL_STAAU : 129- 130: rssag R-I aarar BINR_STAAU : 47- 49: rpgld RaI efars BINR_STAAU : 129- 130: rssag R-I aarar CISA_BACSU : 94- 96: delrk RnI plifv CISA_BACSU : 175- 177: eakii RmI fnyft CISA_BACSU : 219- 221: hrqvv RqI lmnss CISA_BACSU : 438- 439: tekcn R-I qskmk CISA_BACSU : 458- 460: enalk RaI dyfqs DNIV_BPMU : 82- 84: gelre RgI nfrsl DNIV_BPMU : 134- 135: arnkg R-I ggrpp DNIV_BPMU : 190- 191: iendd R-I n DNIV_BPP1 : 83- 85: eelrd RgI nfrsl DNIV_BPP1 : 135- 136: araeg R-I ggrrp DNIV_BPP7 : 83- 85: eelrd RgI nfrsl DNIV_BPP7 : 135- 136: araeg R-I ggrrp DNIV_ECOLI : 83- 85: eelre RgI nfrsl DNIV_ECOLI : 135- 136: araqg R-I ggrrp DNIV_ECOLI : 153- 155: waqag RlI aagtp DNIV_SALAE : 30- 31: sancd R-I fedri DNIV_SALAE : 35- 36: rifed R-I sgkia DNIV_SALAE : 142- 144: lgghp RaI nrheq DNIV_SALAE : 184- 185: yfpas R-I kkrmn DNIV_SALTY : 30- 31: sancd R-I fedri DNIV_SALTY : 35- 36: rifed R-I sgkia DNIV_SALTY : 142- 144: lggrp RaI nkheq PAA4_ECOLI : 17- 18: rlkva R-I ylras PAA4_ECOLI : 66- 68: rpell RmI adlqp PAA4_ECOLI : 84- 85: aekid R-I srlpl PAA4_ECOLI : 181- 182: agmhd R-I itlrs PAA4_ECOLI : 181- 183: agmhd RiI tlrsg RES4_ECOLI : 32- 33: gvkas R-I ftdka RES4_ECOLI : 91- 93: qgvav RfI ddgis RES4_ECOLI : 120- 122: aqaer RrI lertn RES4_ECOLI : 121- 122: qaerr R-I lertn RES4_ECOLI : 144- 145: rfgrk R-I idrns RES4_ECOLI : 144- 146: rfgrk RiI drnsv RESP_CLOPE : 17- 19: eqsln RqI dmlvd RESP_CLOPE : 30- 32: ygvdk RnI yqeki RESP_CLOPE : 67- 68: itdlt R-I srstk RESP_CLOPE : 81- 82: lniid R-I kakga TNP0_ECOLI : 22- 24: tenqr ReI eaagf TNP0_ECOLI : 35- 37: airpq RlI eehis TNP0_ECOLI : 163- 164: ltvia R-I nagis TNP1_ECOLI : 32- 33: gvkan R-I ftdka TNP1_ECOLI : 91- 93: qgvsi RfI ddgis TNP1_ECOLI : 121- 122: qaerq R-I lertn TNP1_ECOLI : 144- 146: vfgrk RkI drdav TNP2_ECOLI : 5- 6: mtgq R-I gyirv TNP2_ECOLI : 74- 76: nlddl RrI vqtlt TNP2_ECOLI : 75- 76: lddlr R-I vqtlt TNP2_ECOLI : 150- 151: slsse R-I aelrq TNP3_ECOLI : 2- 3: m R-I fgyar TNP3_ECOLI : 32- 33: gvkan R-I ftdka TNP3_ECOLI : 91- 93: qgvav RfI ddgis TNP3_ECOLI : 120- 122: aqaer RrI lertn TNP3_ECOLI : 121- 122: qaerr R-I lertn TNP4_KLEPN : 2- 3: m R-I fgyar TNP4_KLEPN : 32- 33: gvkan R-I ftdka TNP4_KLEPN : 91- 93: qgvav RfI ddgis TNP4_KLEPN : 120- 122: aqaer RrI lertn TNP4_KLEPN : 121- 122: qaerr R-I lertn TNP5_PSEAE : 5- 6: mqgh R-I gyvrv TNP5_PSEAE : 86- 87: tqrgv R-I eflke TNP6_ENTFC : 2- 4: m RkI gyirv TNP6_ENTFC : 66- 67: vtdlt R-I trstq TNP7_ECOLI : 5- 6: mqgh R-I gyvrv TNP7_ECOLI : 86- 87: tqrgv R-I eflke TNP7_ENTFA : 65- 66: iykld R-I srstk TNP7_ENTFA : 116- 118: laele RdI iiert TNP7_ENTFA : 162- 164: keysi RqI ldask TNPT_PSEPU : 32- 33: nvrat R-I ftdkv TNPT_PSEPU : 121- 122: qaerl R-I lertn UVP1_ECOLI : 88- 90: ddlkk RgI tfiai UVP1_ECOLI : 98- 99: iaikd R-I dtsap UVP1_ECOLI : 124- 126: nfern RnI ertrs YIM3_BPPH1 : 72- 74: lelml RhI eqgim T 20: 7.8401 68( 25) R-x(4,5)-G Occurences: 68(25) BIN3_STAAU : 130- 135: rnesk Rrqaq-G iqvak BIN3_STAAU : 194- 200: rqtvy RikhdnG ls BINL_STAAU : 21- 26: nlqed Rlnay-G sekif BINL_STAAU : 62- 67: tivvw Rldrl-G rnmed BINL_STAAU : 133- 139: griaa RargryG grpek BINL_STAAU : 135- 140: iaara Rgryg-G rpekl BINR_STAAU : 21- 26: nlqed Rlnqy-G cekif BINR_STAAU : 62- 67: tivvw Rldrl-G rnmad BINR_STAAU : 133- 139: griaa RargryG grpek BINR_STAAU : 135- 140: iaara Rgryg-G rpekl CISA_BACSU : 58- 64: alnrl RedaskG lisqv CISA_BACSU : 304- 309: lsglv Rcgkc-G ntmtg CISA_BACSU : 330- 335: yvytc Rknys-G akdrg DNIV_BPMU : 38- 43: klsgt Rtdrp-G lkrdl DNIV_BPMU : 130- 136: glaaa RnkgriG grppk DNIV_BPMU : 152- 157: weqag Rllaq-G iprkq DNIV_BPP1 : 50- 55: lkkvl Rmlsr-G dtlvv DNIV_BPP1 : 131- 137: gldaa RaegriG grrpk DNIV_BPP1 : 152- 158: twqqm RrllekG iprkq DNIV_BPP1 : 153- 158: wqqmr Rllek-G iprkq DNIV_BPP7 : 50- 55: lkkvl Rmlsr-G dtlvv DNIV_BPP7 : 131- 137: gldaa RaegriG grrpk DNIV_BPP7 : 152- 158: twqqm RrllenG iprkq DNIV_BPP7 : 153- 158: wqqmr Rllen-G iprkq DNIV_ECOLI : 50- 55: lkkll Rtlsa-G dtlvv DNIV_ECOLI : 131- 137: gleta RaqgriG grrpk DNIV_ECOLI : 153- 158: waqag Rliaa-G tprqk DNIV_SALAE : 132- 138: glaaa RaqgrlG ghpra DNIV_SALAE : 154- 159: qeqis Rllek-G hprqq DNIV_SALTY : 132- 138: glaaa RaqgrlG grpra DNIV_SALTY : 154- 159: qeqis Rllek-G hprqq PAA4_ECOLI : 4- 10: mat ReqqpeG rrlkv PAA4_ECOLI : 51- 56: vagiy Rekas-G aradr PAA4_ECOLI : 153- 159: dyedr RerqrqG vqlak PAA4_ECOLI : 172- 177: grytg Rkrda-G mhdri RES4_ECOLI : 52- 58: gldll RmkveeG dvtlv RES4_ECOLI : 91- 96: qgvav Rfidd-G istdg RESP_CLOPE : 81- 86: lniid Rikak-G asiks RESP_CLOPE : 138- 143: ksaka Rgrng-G rpskr TNP0_ECOLI : 22- 28: tenqr ReieaaG fairp TNP0_ECOLI : 138- 143: hsgia Rakat-G krfgr TNP1_ECOLI : 21- 27: ldiqv RalkdaG vkanr TNP1_ECOLI : 52- 58: gldll RmkveeG dvilv TNP1_ECOLI : 91- 96: qgvsi Rfidd-G istdg TNP2_ECOLI : 123- 129: erali RerqreG ialak TNP2_ECOLI : 136- 141: alakq Rgayr-G rkksl TNP2_ECOLI : 155- 161: riael RqrveaG eqktk TNP3_ECOLI : 21- 27: ldiqi RalkdaG vkanr TNP3_ECOLI : 52- 58: gldll RmkveeG dvilv TNP3_ECOLI : 91- 96: qgvav Rfidd-G istdg TNP4_KLEPN : 21- 27: ldiqi RavkdaG vkanr TNP4_KLEPN : 52- 58: gldll RmkveeG dvilv TNP4_KLEPN : 91- 96: qgvav Rfidd-G istdg TNP5_PSEAE : 123- 129: erali RerqreG itlak TNP5_PSEAE : 136- 141: tlakq Rgayr-G rkkal TNP5_PSEAE : 155- 161: qaatl RqrataG epkaq TNP6_ENTFC : 124- 130: erdli RmrqreG ielak TNP7_ECOLI : 123- 129: erali RerqreG ialak TNP7_ECOLI : 136- 141: alakq Rgayr-G rkkal TNP7_ECOLI : 155- 161: qaatl RqrataG epkaq TNP7_ENTFA : 131- 137: glkaa RvrgkkG grpsk TNP7_ENTFA : 133- 138: kaarv Rgkkg-G rpskg TNPT_PSEPU : 52- 58: glrml RlkveeG dvvlv TNPT_PSEPU : 91- 96: mgvai Rfldd-G isteg UVP1_ECOLI : 137- 143: glaaa RargrvG grkps UVP1_ECOLI : 139- 144: aaara Rgrvg-G rkpsl UVP1_ECOLI : 184- 189: rmtiy Ryttk-G nhsek YIM3_BPPH1 : 72- 77: lelml Rhieq-G imthc Number of patterns evaluated by Pratt:213 Total running time: 0 seconds