------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file RECF_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RECF_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RECF_ACTPL 360 RECF_BACSU 370 RECF_ECOLI 356 RECF_HAEIN 359 RECF_MYCLE 223 RECF_PROMI 362 RECF_PSEPU 365 RECF_SALTY 354 RECF_STAAU 103 RECF_STRCO 373 Pratt run started at Thu Feb 6 21:05:13 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 11( 10) E-L-x(3,4)-R-x(2,3)-L 2: 15.6802 18( 10) D-x(3,4)-E-L-x(3,4)-R 3: 15.1802 11( 10) D-x(2,4)-R-x(3,4)-L-L 4: 15.1802 12( 10) A-x(0,1)-L-x(1,3)-L-A 5: 12.5102 12( 10) L-A-E 6: 12.5102 12( 10) Q-R-x(3)-L 7: 12.0102 10( 10) Q-x(2,3)-L-L 8: 12.0102 13( 10) R-x(3,4)-L-L 9: 12.0102 15( 10) L-x(0,1)-D-D 10: 12.0102 22( 10) L-x(0,1)-D-x(5)-L 11: 12.0102 14( 10) L-x(3)-R-x(2,3)-L 12: 12.0102 21( 10) L-x(2,3)-R-x(3)-L 13: 12.0102 18( 10) L-x(2)-L-x(3,4)-R 14: 12.0102 14( 10) L-x(4)-A-x(0,1)-E 15: 12.0102 15( 10) R-x(3)-L-x(2,3)-L 16: 12.0102 22( 10) R-x(2,3)-L-x(3)-L 17: 12.0102 15( 10) Q-x(0,1)-R-x(3)-L 18: 11.5102 15( 10) L-x(0,1)-R-x(3,4)-E 19: 11.5102 11( 10) L-x(4,5)-Q-x(1,2)-V 20: 11.5102 16( 10) T-x(0,1)-L-x(0,1)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 18.9517 11( 10) A-x(0,1)-L-x(1,3)-L-A-[AEGQS]-x-[DENQR] B 2: 18.3420 11( 10) E-L-x(3,4)-R-x(2,3)-L-x(3)-[ILV] C 3: 18.3088 10( 10) Q-R-[NT]-[AST]-x-L D 4: 17.8088 12( 10) Q-x(0,1)-R-[NT]-[AST]-x-L E 5: 15.6802 18( 10) D-x(3,4)-E-L-x(3,4)-R F 6: 15.2968 11( 10) L-x(4)-A-x(0,1)-E-[IL] G 7: 15.1802 11( 10) D-x(2,4)-R-x(3,4)-L-L H 8: 14.6145 15( 10) L-x(2,3)-R-x-[AST]-x-L I 9: 14.2514 10( 10) R-x(3,4)-L-L-x(2)-[AGIL] J 10: 14.2484 14( 10) R-x(2,3)-L-x(3)-L-x-[AEQS] K 11: 14.2137 17( 10) L-x(0,1)-D-[ADSV]-x(4)-L L 12: 14.2102 15( 10) L-x(2)-L-x(3,4)-R-x-[APST] M 13: 13.9301 10( 10) R-x-[AEGQT]-x-L-x(2,3)-L N 14: 13.4337 12( 10) T-x(0,1)-L-x(0,1)-L-x(2)-[AGILP] O 15: 12.5102 12( 10) L-A-E P 16: 12.0102 10( 10) Q-x(2,3)-L-L Q 17: 12.0102 15( 10) L-x(0,1)-D-D R 18: 12.0102 14( 10) L-x(3)-R-x(2,3)-L S 19: 12.0102 15( 10) Q-x(0,1)-R-x(3)-L T 20: 11.5102 15( 10) L-x(0,1)-R-x(3,4)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 18.9517 11( 10) A-x(0,1)-L-x(1,3)-L-A-[AEGQS]-x-[DENQR] Occurences: 11(10) RECF_ACTPL : 280- 287: kllmc A-Lr--LAQgE ylvaq RECF_BACSU : 292- 301: qqrtt A-LslkLAEiD lihee RECF_ECOLI : 279- 286: kllmc A-Lr--LAQgE fltre RECF_HAEIN : 280- 287: kllmc A-Lr--LAQgE hlmke RECF_MYCLE : 163- 172: lrqrt AlLks-LAAaR yrsdq RECF_MYCLE : 163- 172: lrqrt A-LlksLAAaR yrsdq RECF_PROMI : 283- 290: kllmc A-Lr--LAQgE yftrk RECF_PSEPU : 255- 265: agpqr AdLrlrLAGnN aadil RECF_SALTY : 279- 286: kllmc A-Lr--LAQgQ fltre RECF_STAAU : 26- 35: qqrtt A-LsikLAEiE lmnie RECF_STRCO : 297- 306: eswsy A-LalrLASfD llrae RECF_STRCO : 299- 306: wsyal A-Lr--LASfD llrae B 2: 18.3420 11( 10) E-L-x(3,4)-R-x(2,3)-L-x(3)-[ILV] Occurences: 11(10) RECF_ACTPL : 307- 320: ddfas ELdpikRel-LahrL resgs RECF_BACSU : 321- 334: ddvls ELddy-RqshLlhtI qgrvq RECF_ECOLI : 306- 319: ddfas ELdderRgl-LasrL katqs RECF_ECOLI : 306- 319: ddfas ELdde-RrglLasrL katqs RECF_HAEIN : 307- 320: ddfas ELdqykRal-LaerL qqsgs RECF_MYCLE : 196- 208: aehga ELmaa-Rid-LvnqL apeve RECF_PROMI : 310- 323: ddfas ELdanrRql-LaerL kstqa RECF_PROMI : 310- 323: ddfas ELdan-RrqlLaerL kstqa RECF_PSEPU : 307- 320: ddlps ELddqhRra-LcrlL eelrc RECF_SALTY : 305- 318: dafas ELddgrRgl-LasrL katqs RECF_SALTY : 305- 318: dafas ELddg-RrglLasrL katqs RECF_STAAU : 54- 67: cdvls ELdds-RqthLlstI qhkvq RECF_STRCO : 197- 209: araga ELlaq-Rld-LiasV qplad RECF_STRCO : 325- 338: ddvfa ELdarrRer-LaelV apgeq RECF_STRCO : 325- 338: ddvfa ELdar-RrerLaelV apgeq C 3: 18.3088 10( 10) Q-R-[NT]-[AST]-x-L Occurences: 10(10) RECF_ACTPL : 160- 165: krllk QRNAaL hqvrs RECF_BACSU : 288- 293: gsqgq QRTTaL slkla RECF_ECOLI : 159- 164: krllk QRNAaL rqvtr RECF_HAEIN : 160- 165: nrllk QRNAaL aqnqp RECF_MYCLE : 160- 165: dkvlr QRTAlL kslaa RECF_PROMI : 163- 168: krvlk QRNAaL rqass RECF_PSEPU : 160- 165: qkalr QRNSwL rhgtl RECF_SALTY : 159- 164: krllk QRNAaL aqvsr RECF_STAAU : 22- 27: gsqgq QRTTaL sikla RECF_STRCO : 160- 165: drvlk QRNTlL ksaal D 4: 17.8088 12( 10) Q-x(0,1)-R-[NT]-[AST]-x-L Occurences: 12(10) RECF_ACTPL : 160- 165: krllk Q-RNAaL hqvrs RECF_BACSU : 287- 293: ygsqg QqRTTaL slkla RECF_BACSU : 288- 293: gsqgq Q-RTTaL slkla RECF_ECOLI : 159- 164: krllk Q-RNAaL rqvtr RECF_HAEIN : 160- 165: nrllk Q-RNAaL aqnqp RECF_MYCLE : 160- 165: dkvlr Q-RTAlL kslaa RECF_PROMI : 163- 168: krvlk Q-RNAaL rqass RECF_PSEPU : 160- 165: qkalr Q-RNSwL rhgtl RECF_SALTY : 159- 164: krllk Q-RNAaL aqvsr RECF_STAAU : 21- 27: ygsqg QqRTTaL sikla RECF_STAAU : 22- 27: gsqgq Q-RTTaL sikla RECF_STRCO : 160- 165: drvlk Q-RNTlL ksaal E 5: 15.6802 18( 10) D-x(3,4)-E-L-x(3,4)-R Occurences: 18(10) RECF_ACTPL : 302- 313: clfli DdfasELdpikR ellah RECF_ACTPL : 303- 313: lflid Dfas-ELdpikR ellah RECF_ACTPL : 309- 319: fasel DpikrELlah-R lresg RECF_BACSU : 316- 326: pilll DdvlsELddy-R qshll RECF_BACSU : 317- 326: illld Dvls-ELddy-R qshll RECF_ECOLI : 301- 311: clyli DdfasELdde-R rglla RECF_ECOLI : 301- 312: clyli DdfasELdderR gllas RECF_ECOLI : 302- 311: lylid Dfas-ELdde-R rglla RECF_ECOLI : 302- 312: lylid Dfas-ELdderR gllas RECF_HAEIN : 302- 313: cifli DdfasELdqykR allae RECF_HAEIN : 303- 313: iflid Dfas-ELdqykR allae RECF_MYCLE : 15- 25: dfrsw DhvdlELnpg-R tvffg RECF_PROMI : 305- 315: clyll DdfasELdan-R rqlla RECF_PROMI : 305- 316: clyll DdfasELdanrR qllae RECF_PROMI : 306- 315: lylld Dfas-ELdan-R rqlla RECF_PROMI : 306- 316: lylld Dfas-ELdanrR qllae RECF_PSEPU : 302- 313: ciylv DdlpsELddqhR ralcr RECF_PSEPU : 303- 313: iylvd Dlps-ELddqhR ralcr RECF_SALTY : 300- 310: clyli DafasELddg-R rglla RECF_SALTY : 300- 311: clyli DafasELddgrR gllas RECF_STAAU : 50- 59: psyyc Dvls-ELdds-R qthll RECF_STRCO : 320- 330: pvlvl DdvfaELdar-R rerla RECF_STRCO : 320- 331: pvlvl DdvfaELdarrR erlae RECF_STRCO : 321- 330: vlvld Dvfa-ELdar-R rerla RECF_STRCO : 321- 331: vlvld Dvfa-ELdarrR erlae F 6: 15.2968 11( 10) L-x(4)-A-x(0,1)-E-[IL] Occurences: 11(10) RECF_ACTPL : 300- 308: rqclf LiddfAsEL dpikr RECF_BACSU : 293- 300: qrtta LslklA-EI dlihe RECF_ECOLI : 299- 307: rrcly LiddfAsEL dderr RECF_HAEIN : 300- 308: rhcif LiddfAsEL dqykr RECF_MYCLE : 190- 197: vwdtr LaehgA-EL maari RECF_PROMI : 303- 311: qrcly LlddfAsEL danrr RECF_PSEPU : 182- 189: awdre LclrsA-EI deyrr RECF_SALTY : 298- 306: grcly LidafAsEL ddgrr RECF_STAAU : 27- 34: qrtta LsiklA-EI elmni RECF_STRCO : 191- 198: vwdqh LaragA-EL laqrl RECF_STRCO : 319- 326: epvlv LddvfA-EL darrr G 7: 15.1802 11( 10) D-x(2,4)-R-x(3,4)-L-L Occurences: 11(10) RECF_ACTPL : 267- 277: glpve Dvls-RgqlkLL mcalr RECF_BACSU : 323- 331: vlsel Ddy--Rqsh-LL htiqg RECF_ECOLI : 266- 276: gapve Dtls-RgqlkLL mcalr RECF_HAEIN : 267- 277: glpve Dvls-RgqlkLL mcalr RECF_MYCLE : 155- 165: vrady Dkvl-RqrtaLL kslaa RECF_PROMI : 270- 280: gtpve Dmls-RgqlkLL mcalr RECF_PSEPU : 309- 320: lpsel DdqhrRalcrLL eelrc RECF_PSEPU : 310- 320: pseld Dqhr-RalcrLL eelrc RECF_SALTY : 266- 276: gapve Dtls-RgqlkLL mcalr RECF_STAAU : 56- 64: vlsel Dds--Rqth-LL stiqh RECF_STRCO : 188- 199: tldvw DqhlaRagaeLL aqrld H 8: 14.6145 15( 10) L-x(2,3)-R-x-[AST]-x-L Occurences: 15(10) RECF_ACTPL : 157- 165: anlkr LlkqRnAaL hqvrs RECF_ACTPL : 158- 165: nlkrl Lkq-RnAaL hqvrs RECF_BACSU : 322- 330: dvlse LddyRqShL lhtiq RECF_ECOLI : 156- 164: snlkr LlkqRnAaL rqvtr RECF_ECOLI : 157- 164: nlkrl Lkq-RnAaL rqvtr RECF_HAEIN : 157- 165: snlnr LlkqRnAaL aqnqp RECF_HAEIN : 158- 165: nlnrl Lkq-RnAaL aqnqp RECF_MYCLE : 158- 165: dydkv Lrq-RtAlL kslaa RECF_PROMI : 70- 77: enafi Lhg-RlSgL deesr RECF_PROMI : 161- 168: dlkrv Lkq-RnAaL rqass RECF_PSEPU : 158- 165: rlqka Lrq-RnSwL rhgtl RECF_SALTY : 156- 164: snlkr LlkqRnAaL aqvsr RECF_SALTY : 157- 164: nlkrl Lkq-RnAaL aqvsr RECF_STAAU : 55- 63: dvlse LddsRqThL lstiq RECF_STRCO : 158- 165: dydrv Lkq-RnTlL ksaal I 9: 14.2514 10( 10) R-x(3,4)-L-L-x(2)-[AGIL] Occurences: 10(10) RECF_ACTPL : 271- 280: edvls RgqlkLLmcA lrlaq RECF_BACSU : 326- 334: elddy Rqsh-LLhtI qgrvq RECF_ECOLI : 270- 279: edtls RgqlkLLmcA lrlaq RECF_HAEIN : 271- 280: edvls RgqlkLLmcA lrlaq RECF_MYCLE : 159- 168: ydkvl RqrtaLLksL aaary RECF_PROMI : 274- 283: edmls RgqlkLLmcA lrlaq RECF_PSEPU : 314- 323: ddqhr RalcrLLeeL rcqvf RECF_SALTY : 270- 279: edtls RgqlkLLmcA lrlaq RECF_STAAU : 59- 67: eldds Rqth-LLstI qhkvq RECF_STRCO : 272- 280: lvgph Rddl-LLklG slpak J 10: 14.2484 14( 10) R-x(2,3)-L-x(3)-L-x-[AEQS] Occurences: 14(10) RECF_ACTPL : 313- 322: ldpik Rel-LahrLrE sgsqv RECF_BACSU : 289- 299: sqgqq RttaLslkLaE idlih RECF_ECOLI : 311- 321: eldde RrglLasrLkA tqsqv RECF_ECOLI : 312- 321: ldder Rgl-LasrLkA tqsqv RECF_HAEIN : 313- 322: ldqyk Ral-LaerLqQ sgsqv RECF_MYCLE : 161- 170: kvlrq Rta-LlksLaA aryrs RECF_PROMI : 315- 325: eldan RrqlLaerLkS tqaqv RECF_PROMI : 316- 325: ldanr Rql-LaerLkS tqaqv RECF_PSEPU : 313- 322: lddqh Rra-LcrlLeE lrcqv RECF_SALTY : 310- 320: elddg RrglLasrLkA tqsqv RECF_SALTY : 311- 320: lddgr Rgl-LasrLkA tqsqv RECF_STAAU : 23- 33: sqgqq RttaLsikLaE ielmn RECF_STRCO : 242- 251: geaht Red-LyeqLmA alaea RECF_STRCO : 272- 281: lvgph Rdd-LllkLgS lpakg K 11: 14.2137 17( 10) L-x(0,1)-D-[ADSV]-x(4)-L Occurences: 17(10) RECF_ACTPL : 300- 308: rqclf LiDDfaseL dpikr RECF_BACSU : 178- 185: tdrtm L-DVltdqL vevaa RECF_BACSU : 314- 322: eypil LlDDvlseL ddyrq RECF_BACSU : 315- 322: ypill L-DDvlseL ddyrq RECF_ECOLI : 299- 307: rrcly LiDDfaseL dderr RECF_ECOLI : 307- 314: dfase L-DDerrgL lasrl RECF_HAEIN : 300- 308: rhcif LiDDfaseL dqykr RECF_MYCLE : 183- 190: gvldt L-DVwdtrL aehga RECF_PROMI : 303- 311: qrcly LlDDfaseL danrr RECF_PROMI : 304- 311: rclyl L-DDfaseL danrr RECF_PROMI : 311- 318: dfase L-DAnrrqL laerl RECF_PSEPU : 300- 308: ghciy LvDDlpseL ddqhr RECF_SALTY : 298- 306: grcly LiDAfaseL ddgrr RECF_SALTY : 306- 313: afase L-DDgrrgL lasrl RECF_STAAU : 55- 63: dvlse LdDSrqthL lstiq RECF_STRCO : 184- 191: mdlst L-DVwdqhL araga RECF_STRCO : 319- 326: epvlv L-DDvfaeL darrr L 12: 14.2102 15( 10) L-x(2)-L-x(3,4)-R-x-[APST] Occurences: 15(10) RECF_ACTPL : 154- 163: scwan LkrLlkq-RnA alhqv RECF_ACTPL : 274- 284: lsrgq LklLmcalRlA qgeyl RECF_BACSU : 319- 328: llddv LseLddy-RqS hllht RECF_ECOLI : 153- 162: tawsn LkrLlkq-RnA alrqv RECF_ECOLI : 273- 283: lsrgq LklLmcalRlA qgefl RECF_HAEIN : 154- 163: sawsn LnrLlkq-RnA alaqn RECF_HAEIN : 274- 284: lsrgq LklLmcalRlA qgehl RECF_MYCLE : 136- 145: nrrry LddLatv-RqP viaav RECF_PROMI : 277- 287: lsrgq LklLmcalRlA qgeyf RECF_PSEPU : 45- 55: leavh LlgLarsfRsT rlnpv RECF_SALTY : 153- 162: tawsn LkrLlkq-RnA alaqv RECF_SALTY : 273- 283: lsrgq LklLmcalRlA qgqfl RECF_STAAU : 52- 61: yycdv LseLdds-RqT hllst RECF_STRCO : 46- 55: eavgy LatLgsh-RvS sdapl RECF_STRCO : 136- 145: errrf LdeLita-RsP rmagv M 13: 13.9301 10( 10) R-x-[AEGQT]-x-L-x(2,3)-L Occurences: 10(10) RECF_ACTPL : 132- 140: ggptf RrAfLdwgL fhqyt RECF_BACSU : 289- 297: sqgqq RtTaLslkL aeidl RECF_ECOLI : 311- 319: eldde RrGlLasrL katqs RECF_HAEIN : 132- 140: ggpsy RrAfLdwgL fhhqt RECF_MYCLE : 161- 168: kvlrq RtAlLks-L aaary RECF_PROMI : 315- 323: eldan RrQlLaerL kstqa RECF_PSEPU : 104- 111: dgqna RqAqLae-L lplql RECF_PSEPU : 104- 112: dgqna RqAqLaelL plqli RECF_SALTY : 310- 318: elddg RrGlLasrL katqs RECF_STAAU : 23- 31: sqgqq RtTaLsikL aeiel RECF_STRCO : 330- 337: eldar RrErLae-L vapge N 14: 13.4337 12( 10) T-x(0,1)-L-x(0,1)-L-x(2)-[AGILP] Occurences: 12(10) RECF_ACTPL : 37- 43: ngsgk TsL-LeaI fylgh RECF_ACTPL : 123- 128: tpegl T-L-LngG ptfrr RECF_BACSU : 291- 298: gqqrt TaLsLklA eidli RECF_ECOLI : 122- 127: tpegf T-L-LngG pkyrr RECF_HAEIN : 37- 43: ngsgk TsL-LeaI fylgh RECF_HAEIN : 123- 128: tpegl T-L-LngG psyrr RECF_MYCLE : 162- 168: vlrqr TaL-LksL aaary RECF_PROMI : 126- 131: tpegf T-L-LngG pkyrr RECF_PSEPU : 18- 23: nlhpv T-L-LpsP rinil RECF_SALTY : 122- 127: tpegf T-L-LtgG pkyrr RECF_STAAU : 61- 67: ddsrq ThL-LstI qhkvq RECF_STRCO : 163- 168: lkqrn T-L-LksA alarr O 15: 12.5102 12( 10) L-A-E Occurences: 12(10) RECF_ACTPL : 184- 186: ielak LAE ivsqm RECF_BACSU : 297- 299: alslk LAE idlih RECF_ECOLI : 183- 185: kelip LAE qistw RECF_HAEIN : 316- 318: ykral LAE rlqqs RECF_MYCLE : 190- 192: vwdtr LAE hgael RECF_PROMI : 319- 321: nrrql LAE rlkst RECF_PSEPU : 108- 110: arqaq LAE llplq RECF_SALTY : 183- 185: kelip LAE qistw RECF_SALTY : 330- 332: vfvse LAE hvidm RECF_STAAU : 31- 33: alsik LAE ielmn RECF_STRCO : 253- 255: qlmaa LAE arkqe RECF_STRCO : 334- 336: rrrer LAE lvapg P 16: 12.0102 10( 10) Q-x(2,3)-L-L Occurences: 10(10) RECF_ACTPL : 273- 277: vlsrg Qlk-LL mcalr RECF_BACSU : 327- 331: lddyr Qsh-LL htiqg RECF_ECOLI : 272- 276: tlsrg Qlk-LL mcalr RECF_HAEIN : 273- 277: vlsrg Qlk-LL mcalr RECF_MYCLE : 160- 165: dkvlr QrtaLL kslaa RECF_PROMI : 276- 280: mlsrg Qlk-LL mcalr RECF_PSEPU : 107- 112: narqa QlaeLL plqli RECF_SALTY : 272- 276: tlsrg Qlk-LL mcalr RECF_STAAU : 60- 64: lddsr Qth-LL stiqh RECF_STRCO : 160- 165: drvlk QrntLL ksaal Q 17: 12.0102 15( 10) L-x(0,1)-D-D Occurences: 15(10) RECF_ACTPL : 300- 303: rqclf LiDD fasel RECF_BACSU : 314- 317: eypil LlDD vlsel RECF_BACSU : 315- 317: ypill L-DD vlsel RECF_BACSU : 322- 324: dvlse L-DD yrqsh RECF_ECOLI : 299- 302: rrcly LiDD fasel RECF_ECOLI : 307- 309: dfase L-DD errgl RECF_HAEIN : 300- 303: rhcif LiDD fasel RECF_MYCLE : 136- 138: nrrry L-DD latvr RECF_PROMI : 303- 306: qrcly LlDD fasel RECF_PROMI : 304- 306: rclyl L-DD fasel RECF_PSEPU : 300- 303: ghciy LvDD lpsel RECF_PSEPU : 308- 310: dlpse L-DD qhrra RECF_SALTY : 306- 308: afase L-DD grrgl RECF_STAAU : 55- 57: dvlse L-DD srqth RECF_STRCO : 319- 321: epvlv L-DD vfael R 18: 12.0102 14( 10) L-x(3)-R-x(2,3)-L Occurences: 14(10) RECF_ACTPL : 157- 165: anlkr LlkqRnaaL hqvrs RECF_BACSU : 322- 330: dvlse LddyRqshL lhtiq RECF_ECOLI : 156- 164: snlkr LlkqRnaaL rqvtr RECF_ECOLI : 307- 314: dfase LddeRrg-L lasrl RECF_ECOLI : 307- 315: dfase LddeRrglL asrlk RECF_HAEIN : 157- 165: snlnr LlkqRnaaL aqnqp RECF_MYCLE : 197- 204: ehgae LmaaRid-L vnqla RECF_PROMI : 311- 318: dfase LdanRrq-L laerl RECF_PROMI : 311- 319: dfase LdanRrqlL aerlk RECF_PSEPU : 20- 28: hpvtl LpspRiniL ygang RECF_SALTY : 156- 164: snlkr LlkqRnaaL aqvsr RECF_SALTY : 306- 313: afase LddgRrg-L lasrl RECF_SALTY : 306- 314: afase LddgRrglL asrlk RECF_STAAU : 55- 63: dvlse LddsRqthL lstiq RECF_STRCO : 109- 116: kprdv LgivRtv-L faped RECF_STRCO : 198- 205: ragae LlaqRld-L iasvq RECF_STRCO : 326- 334: dvfae LdarRrerL aelva S 19: 12.0102 15( 10) Q-x(0,1)-R-x(3)-L Occurences: 15(10) RECF_ACTPL : 160- 165: krllk Q-RnaaL hqvrs RECF_BACSU : 129- 135: vkgsp QvRrrfL dmeig RECF_BACSU : 159- 164: qkils Q-RnhfL kqlqt RECF_BACSU : 287- 293: ygsqg QqRttaL slkla RECF_BACSU : 288- 293: gsqgq Q-RttaL slkla RECF_ECOLI : 159- 164: krllk Q-RnaaL rqvtr RECF_HAEIN : 160- 165: nrllk Q-RnaaL aqnqp RECF_MYCLE : 160- 165: dkvlr Q-RtalL kslaa RECF_PROMI : 163- 168: krvlk Q-RnaaL rqass RECF_PROMI : 298- 303: trkng Q-RclyL lddfa RECF_PSEPU : 160- 165: qkalr Q-RnswL rhgtl RECF_SALTY : 159- 164: krllk Q-RnaaL aqvsr RECF_STAAU : 21- 27: ygsqg QqRttaL sikla RECF_STAAU : 22- 27: gsqgq Q-RttaL sikla RECF_STRCO : 160- 165: drvlk Q-RntlL ksaal T 20: 11.5102 15( 10) L-x(0,1)-R-x(3,4)-E Occurences: 15(10) RECF_ACTPL : 199- 204: syaeg L-Rpei-E ktcqf RECF_ACTPL : 281- 287: llmca L-RlaqgE ylvaq RECF_BACSU : 251- 257: eafsk L-RekeiE rgvtl RECF_ECOLI : 173- 179: tryeq L-RpwdkE lipla RECF_ECOLI : 280- 286: llmca L-RlaqgE fltre RECF_HAEIN : 281- 287: llmca L-RlaqgE hlmke RECF_MYCLE : 101- 107: rlnrs LvRgmr-E vvgvl RECF_PROMI : 284- 290: llmca L-RlaqgE yftrk RECF_PSEPU : 316- 322: qhrra LcRlle-E lrcqv RECF_SALTY : 173- 179: sryeq L-RpwdkE lipla RECF_STAAU : 93- 100: mnnak LyRinqgE iik RECF_STRCO : 60- 66: ssdap LvRmga-E ravir RECF_STRCO : 191- 197: vwdqh LaRaga-E llaqr RECF_STRCO : 307- 314: lasfd LlRaegnE pvlvl RECF_STRCO : 308- 314: asfdl L-RaegnE pvlvl Number of patterns evaluated by Pratt:1075 Total running time: 1 seconds