------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file RECEPTOR_TYR_KIN_V_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RECEPTOR_TYR_KIN_V_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: KECK_HUMAN 976 KEEK_HUMAN 21 KEEK_RAT 372 KEK4_CHICK 983 KEK4_MOUSE 983 KEK5_CHICK 995 KELK_RAT 984 KEPH_HUMAN 984 KERK_HUMAN 981 KHEK_HUMAN 983 KSEK_MOUSE 986 Pratt run started at Thu Feb 6 21:05:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 54.2107 11( 11) M-I-x-T-E-x-M-E-N-G-x-L-D-x-F-L-R 2: 50.0406 11( 11) I-x-T-E-x-M-E-N-G-x-L-D-x-F-L-R 3: 45.8706 11( 11) T-E-x-M-E-N-G-x-L-D-x-F-L-R 4: 41.7005 11( 11) E-x-M-E-N-G-x-L-D-x-F-L-R 5: 37.5305 11( 11) M-E-N-G-x-L-D-x-F-L-R 6: 33.3604 11( 11) E-N-G-x-L-D-x-F-L-R 7: 29.1904 11( 11) N-G-x-L-D-x-F-L-R 8: 25.0203 11( 11) G-x-L-D-x-F-L-R 9: 20.8503 11( 11) L-D-x-F-L-R 10: 16.6802 11( 11) D-x-F-L-R 11: 16.1802 14( 11) I-V-x(1,2)-E-x(4)-G 12: 15.6802 17( 11) S-x(0,1)-D-x(2)-L-x(0,1)-R 13: 15.1802 13( 11) Y-x(2,4)-N-x(3,4)-D-x(3)-R 14: 15.1802 12( 11) R-x(0,1)-L-A-x(1,3)-I 15: 14.6802 16( 11) G-x(4)-I-x(1,3)-T-x(0,2)-E 16: 12.5102 13( 11) F-L-R 17: 12.5102 18( 11) V-x(4)-E-x-G 18: 12.0102 12( 11) S-x-D-x(2,3)-R 19: 12.0102 15( 11) N-G-x(0,1)-S 20: 12.0102 21( 11) V-x-E-x(2,3)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 63.7992 11( 11) M-I-[IV]-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R B 2: 60.5743 11( 11) M-I-x-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R C 3: 59.6291 11( 11) I-[IV]-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R D 4: 52.2342 11( 11) T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R E 5: 48.0641 11( 11) E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R F 6: 43.8633 11( 11) R-x(0,1)-L-A-x(1,3)-I-[LV]-x-[EN]-x(3)-[CNV]-[CG]-x-[LV]-[DS]-[ADT]-F-[GL] G 7: 40.7096 11( 11) M-E-N-G-[AS]-L-D-x-F-L-R H 8: 36.5395 11( 11) E-N-G-[AS]-L-D-x-F-L-R I 9: 32.3695 11( 11) N-G-[AS]-L-D-x-F-L-R J 10: 28.1994 11( 11) G-[AS]-L-D-x-F-L-R K 11: 28.1257 14( 11) I-V-x(1,2)-E-x-[LM]-[EST]-x-G-[DES]-x-[DP] L 12: 25.0766 13( 11) G-x(2)-[AI]-x-I-x(1,3)-T-x(0,2)-E-x(2)-[AENQS]-x(4)-[DET]-x(3)-[DER] M 13: 22.1131 14( 11) V-x-[EG]-x(2)-E-x-G-[ES]-[LV] N 14: 20.8503 11( 11) L-D-x-F-L-R O 15: 18.3503 12( 11) Y-x(2,4)-N-x(3,4)-D-x(2)-[AL]-R P 16: 16.6802 11( 11) D-x-F-L-R Q 17: 15.6802 17( 11) S-x(0,1)-D-x(2)-L-x(0,1)-R R 18: 13.6399 15( 11) N-G-x(0,1)-S-x(2)-[AGNSTV] S 19: 12.5102 13( 11) F-L-R T 20: 12.5102 18( 11) V-x(4)-E-x-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 63.7992 11( 11) M-I-[IV]-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 689- 705: kykpm MIITEYMENGALDkFLR ekdge KEEK_HUMAN : 5- 21: grla MIVTEYMENGSLDtFLR KEEK_RAT : 77- 93: rgrla MIVTEYMENGSLDaFLR thdgq KEK4_CHICK : 696- 712: kskpv MIVTEYMENGSLDsFLR khdaq KEK4_MOUSE : 696- 712: kskpe MIVTEYMENGSLDsFLR khdaq KEK5_CHICK : 705- 721: ksspv MIITEFMENGSLDsFLR qndgq KELK_RAT : 694- 710: ksrpv MIITEFMENGALDsFLR qndgq KEPH_HUMAN : 707- 723: krkpi MIITEFMENGALDaFLR eredq KERK_HUMAN : 691- 707: kstpv MIITEFMENGSLDsFLR qndgq KHEK_HUMAN : 696- 712: kskpv MIVTEYMENGSLDsFLR khdaq KSEK_MOUSE : 696- 712: kckpv MIITEYMENGSLDaFLR kndgr B 2: 60.5743 11( 11) M-I-x-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 689- 705: kykpm MIiTEYMENGALDkFLR ekdge KEEK_HUMAN : 5- 21: grla MIvTEYMENGSLDtFLR KEEK_RAT : 77- 93: rgrla MIvTEYMENGSLDaFLR thdgq KEK4_CHICK : 696- 712: kskpv MIvTEYMENGSLDsFLR khdaq KEK4_MOUSE : 696- 712: kskpe MIvTEYMENGSLDsFLR khdaq KEK5_CHICK : 705- 721: ksspv MIiTEFMENGSLDsFLR qndgq KELK_RAT : 694- 710: ksrpv MIiTEFMENGALDsFLR qndgq KEPH_HUMAN : 707- 723: krkpi MIiTEFMENGALDaFLR eredq KERK_HUMAN : 691- 707: kstpv MIiTEFMENGSLDsFLR qndgq KHEK_HUMAN : 696- 712: kskpv MIvTEYMENGSLDsFLR khdaq KSEK_MOUSE : 696- 712: kckpv MIiTEYMENGSLDaFLR kndgr C 3: 59.6291 11( 11) I-[IV]-T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 690- 705: ykpmm IITEYMENGALDkFLR ekdge KEEK_HUMAN : 6- 21: grlam IVTEYMENGSLDtFLR KEEK_RAT : 78- 93: grlam IVTEYMENGSLDaFLR thdgq KEK4_CHICK : 697- 712: skpvm IVTEYMENGSLDsFLR khdaq KEK4_MOUSE : 697- 712: skpem IVTEYMENGSLDsFLR khdaq KEK5_CHICK : 706- 721: sspvm IITEFMENGSLDsFLR qndgq KELK_RAT : 695- 710: srpvm IITEFMENGALDsFLR qndgq KEPH_HUMAN : 708- 723: rkpim IITEFMENGALDaFLR eredq KERK_HUMAN : 692- 707: stpvm IITEFMENGSLDsFLR qndgq KHEK_HUMAN : 697- 712: skpvm IVTEYMENGSLDsFLR khdaq KSEK_MOUSE : 697- 712: ckpvm IITEYMENGSLDaFLR kndgr D 4: 52.2342 11( 11) T-E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 692- 705: pmmii TEYMENGALDkFLR ekdge KEEK_HUMAN : 8- 21: lamiv TEYMENGSLDtFLR KEEK_RAT : 80- 93: lamiv TEYMENGSLDaFLR thdgq KEK4_CHICK : 699- 712: pvmiv TEYMENGSLDsFLR khdaq KEK4_MOUSE : 699- 712: pemiv TEYMENGSLDsFLR khdaq KEK5_CHICK : 708- 721: pvmii TEFMENGSLDsFLR qndgq KELK_RAT : 697- 710: pvmii TEFMENGALDsFLR qndgq KEPH_HUMAN : 710- 723: pimii TEFMENGALDaFLR eredq KERK_HUMAN : 694- 707: pvmii TEFMENGSLDsFLR qndgq KHEK_HUMAN : 699- 712: pvmiv TEYMENGSLDsFLR khdaq KSEK_MOUSE : 699- 712: pvmii TEYMENGSLDaFLR kndgr E 5: 48.0641 11( 11) E-[FY]-M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 693- 705: mmiit EYMENGALDkFLR ekdge KEEK_HUMAN : 9- 21: amivt EYMENGSLDtFLR KEEK_RAT : 81- 93: amivt EYMENGSLDaFLR thdgq KEK4_CHICK : 700- 712: vmivt EYMENGSLDsFLR khdaq KEK4_MOUSE : 700- 712: emivt EYMENGSLDsFLR khdaq KEK5_CHICK : 709- 721: vmiit EFMENGSLDsFLR qndgq KELK_RAT : 698- 710: vmiit EFMENGALDsFLR qndgq KEPH_HUMAN : 711- 723: imiit EFMENGALDaFLR eredq KERK_HUMAN : 695- 707: vmiit EFMENGSLDsFLR qndgq KHEK_HUMAN : 700- 712: vmivt EYMENGSLDsFLR khdaq KSEK_MOUSE : 700- 712: vmiit EYMENGSLDaFLR kndgr F 6: 43.8633 11( 11) R-x(0,1)-L-A-x(1,3)-I-[LV]-x-[EN]-x(3)-[CNV]-[CG]-x-[LV]-[DS]-[ADT]-F-[GL] Occurences: 11(11) KECK_HUMAN : 738- 759: mnyvh RdLAarnILvNsnlVCkVSDFG lsrvl KEEK_HUMAN : 2- 20: g R-LAm--IVtEymeNGsLDTFL r KEEK_RAT : 74- 92: vvtrg R-LAm--IVtEymeNGsLDAFL rthdg KEK4_CHICK : 745- 766: mgyvh RdLAarnILiNsnlVCkVSDFG lsrvl KEK4_MOUSE : 745- 766: mgyvh RdLAarnILiNsnlVCkVSDFG lsrvl KEK5_CHICK : 754- 775: mnyvh RdLAarnILvNsnlVCkVSDFG lsrfl KELK_RAT : 743- 764: mnyvh RdLAarnILvNsnlVCkVSDFG lsryl KEPH_HUMAN : 756- 777: hnyvh RdLAarnILvNqnlCCkVSDFG ltrll KERK_HUMAN : 740- 761: mnyvh RdLAarnILvNsnlVCkVSDFG lsrfl KHEK_HUMAN : 745- 766: mgyvh RdLAarnILiNsnlVCkVSDFG lsrvl KSEK_MOUSE : 745- 766: msyvh RdLAarnILvNsnlVCkVSDFG msrvl G 7: 40.7096 11( 11) M-E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 695- 705: iitey MENGALDkFLR ekdge KEEK_HUMAN : 11- 21: ivtey MENGSLDtFLR KEEK_RAT : 83- 93: ivtey MENGSLDaFLR thdgq KEK4_CHICK : 702- 712: ivtey MENGSLDsFLR khdaq KEK4_MOUSE : 702- 712: ivtey MENGSLDsFLR khdaq KEK5_CHICK : 711- 721: iitef MENGSLDsFLR qndgq KELK_RAT : 700- 710: iitef MENGALDsFLR qndgq KEPH_HUMAN : 713- 723: iitef MENGALDaFLR eredq KERK_HUMAN : 697- 707: iitef MENGSLDsFLR qndgq KHEK_HUMAN : 702- 712: ivtey MENGSLDsFLR khdaq KSEK_MOUSE : 702- 712: iitey MENGSLDaFLR kndgr H 8: 36.5395 11( 11) E-N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 696- 705: iteym ENGALDkFLR ekdge KEEK_HUMAN : 12- 21: vteym ENGSLDtFLR KEEK_RAT : 84- 93: vteym ENGSLDaFLR thdgq KEK4_CHICK : 703- 712: vteym ENGSLDsFLR khdaq KEK4_MOUSE : 703- 712: vteym ENGSLDsFLR khdaq KEK5_CHICK : 712- 721: itefm ENGSLDsFLR qndgq KELK_RAT : 701- 710: itefm ENGALDsFLR qndgq KEPH_HUMAN : 714- 723: itefm ENGALDaFLR eredq KERK_HUMAN : 698- 707: itefm ENGSLDsFLR qndgq KHEK_HUMAN : 703- 712: vteym ENGSLDsFLR khdaq KSEK_MOUSE : 703- 712: iteym ENGSLDaFLR kndgr I 9: 32.3695 11( 11) N-G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 697- 705: teyme NGALDkFLR ekdge KEEK_HUMAN : 13- 21: teyme NGSLDtFLR KEEK_RAT : 85- 93: teyme NGSLDaFLR thdgq KEK4_CHICK : 704- 712: teyme NGSLDsFLR khdaq KEK4_MOUSE : 704- 712: teyme NGSLDsFLR khdaq KEK5_CHICK : 713- 721: tefme NGSLDsFLR qndgq KELK_RAT : 702- 710: tefme NGALDsFLR qndgq KEPH_HUMAN : 715- 723: tefme NGALDaFLR eredq KERK_HUMAN : 699- 707: tefme NGSLDsFLR qndgq KHEK_HUMAN : 704- 712: teyme NGSLDsFLR khdaq KSEK_MOUSE : 704- 712: teyme NGSLDaFLR kndgr J 10: 28.1994 11( 11) G-[AS]-L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 698- 705: eymen GALDkFLR ekdge KEEK_HUMAN : 14- 21: eymen GSLDtFLR KEEK_RAT : 86- 93: eymen GSLDaFLR thdgq KEK4_CHICK : 705- 712: eymen GSLDsFLR khdaq KEK4_MOUSE : 705- 712: eymen GSLDsFLR khdaq KEK5_CHICK : 714- 721: efmen GSLDsFLR qndgq KELK_RAT : 703- 710: efmen GALDsFLR qndgq KEPH_HUMAN : 716- 723: efmen GALDaFLR eredq KERK_HUMAN : 700- 707: efmen GSLDsFLR qndgq KHEK_HUMAN : 705- 712: eymen GSLDsFLR khdaq KSEK_MOUSE : 705- 712: eymen GSLDaFLR kndgr K 11: 28.1257 14( 11) I-V-x(1,2)-E-x-[LM]-[EST]-x-G-[DES]-x-[DP] Occurences: 14(11) KECK_HUMAN : 805- 817: vwsfg IVmwEvMTyGErP ywels KEEK_HUMAN : 6- 17: grlam IVt-EyMEnGSlD tflr KEEK_RAT : 78- 89: grlam IVt-EyMEnGSlD aflrt KEK4_CHICK : 697- 708: skpvm IVt-EyMEnGSlD sflrk KEK4_CHICK : 812- 824: awsyg IVlwEvMSyGErP ywems KEK4_MOUSE : 697- 708: skpem IVt-EyMEnGSlD sflrk KEK4_MOUSE : 812- 824: vwsyg IVlwEvMSyGErP ysqms KEK5_CHICK : 823- 835: vwsyg IVmwEvMSyGErP ywdmt KELK_RAT : 812- 824: vwsyg IVmwEvMSfGErP ywdms KEPH_HUMAN : 822- 834: vwsfg IVmwEvLSfGDkP ygems KERK_HUMAN : 809- 821: vwsyg IVmwEvMSyGErP ywdmt KHEK_HUMAN : 697- 708: skpvm IVt-EyMEnGSlD sflrk KHEK_HUMAN : 812- 824: vwsyg IVlwEvMSyGErP ywems KSEK_MOUSE : 812- 824: vwsyg IVmwEvMSyGErP ywdms L 12: 25.0766 13( 11) G-x(2)-[AI]-x-I-x(1,3)-T-x(0,2)-E-x(2)-[AENQS]-x(4)-[DET]-x(3)-[DER] Occurences: 13(11) KECK_HUMAN : 776- 799: tytts GgkIpIrw-TapEaiSyrkfTsasD vwsfg KEEK_HUMAN : 1- 21: GrlAmIv--T--EymEngslDtflR KEEK_RAT : 73- 93: gvvtr GrlAmIv--T--EymEngslDaflR thdgq KEK4_CHICK : 783- 806: ayttr GgkIpIrw-TspEaiAyrkfTsasD awsyg KEK4_MOUSE : 783- 806: ayttr GgkIpIrw-TspEamSyrkfTsasD vwsyg KEK5_CHICK : 601- 624: ghmtp GmkIyIdpfTy-EdpNeavrEfakE idisc KEK5_CHICK : 794- 817: ytsal GgkIpIrw-TapEaiQyrkfTsasD vwsyg KELK_RAT : 590- 613: grgsp GmkIyIdpfTy-EdpNeavrEfakE idvsf KEPH_HUMAN : 793- 816: tyetq GgkIpIrw-TapEaiAhrifTtasD vwsfg KERK_HUMAN : 587- 610: ghmtp GmkIyIdpfTy-EdpNeavrEfakE idisc KERK_HUMAN : 780- 803: ytsal GgkIpIrw-TapEaiQyrkfTsasD vwsyg KHEK_HUMAN : 783- 806: ayttr GgkIpIrw-TspEaiAyrkfTsasD vwsyg KSEK_MOUSE : 783- 806: ayttr GgkIpIrw-TapEaiAyrkfTsasD vwsyg M 13: 22.1131 14( 11) V-x-[EG]-x(2)-E-x-G-[ES]-[LV] Occurences: 14(11) KECK_HUMAN : 618- 627: vtrqk ViGagEfGEV ykgml KEEK_HUMAN : 7- 16: rlami VtEymEnGSL dtflr KEEK_RAT : 79- 88: rlami VtEymEnGSL daflr KEK4_CHICK : 626- 635: isidk VvGagEfGEV csgrl KEK4_CHICK : 698- 707: kpvmi VtEymEnGSL dsflr KEK4_MOUSE : 626- 635: isidk VvGagEfGEV csgrl KEK4_MOUSE : 698- 707: kpemi VtEymEnGSL dsflr KEK5_CHICK : 635- 644: vkieq ViGagEfGEV csghl KELK_RAT : 624- 633: vkiee ViGagEfGEV ykgrl KEPH_HUMAN : 637- 646: lmvdt ViGegEfGEV yrgtl KERK_HUMAN : 621- 630: vkieq ViGagEfGEV csghl KHEK_HUMAN : 626- 635: isidk VvGagEfGEV csgrl KHEK_HUMAN : 698- 707: kpvmi VtEymEnGSL dsflr KSEK_MOUSE : 626- 635: ikiek ViGvgEfGEV csgrl N 14: 20.8503 11( 11) L-D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 700- 705: menga LDkFLR ekdge KEEK_HUMAN : 16- 21: mengs LDtFLR KEEK_RAT : 88- 93: mengs LDaFLR thdgq KEK4_CHICK : 707- 712: mengs LDsFLR khdaq KEK4_MOUSE : 707- 712: mengs LDsFLR khdaq KEK5_CHICK : 716- 721: mengs LDsFLR qndgq KELK_RAT : 705- 710: menga LDsFLR qndgq KEPH_HUMAN : 718- 723: menga LDaFLR eredq KERK_HUMAN : 702- 707: mengs LDsFLR qndgq KHEK_HUMAN : 707- 712: mengs LDsFLR khdaq KSEK_MOUSE : 707- 712: mengs LDaFLR kndgr O 15: 18.3503 12( 11) Y-x(2,4)-N-x(3,4)-D-x(2)-[AL]-R Occurences: 12(11) KECK_HUMAN : 694- 705: miite Yme--Ngal-DkfLR ekdge KECK_HUMAN : 729- 743: aagmk YlanmNyvhrDlaAR nilvn KEEK_HUMAN : 10- 21: mivte Yme--Ngsl-DtfLR KEEK_RAT : 82- 93: mivte Yme--Ngsl-DafLR thdgq KEK4_CHICK : 701- 712: mivte Yme--Ngsl-DsfLR khdaq KEK4_MOUSE : 701- 712: mivte Yme--Ngsl-DsfLR khdaq KEK5_CHICK : 745- 759: aagmk YladmNyvhrDlaAR nilvn KELK_RAT : 734- 748: aagmk YlsemNyvhrDlaAR nilvn KEPH_HUMAN : 747- 761: asgmn YlsnhNyvhrDlaAR nilvn KERK_HUMAN : 731- 745: aagmk YladmNyvhrDlaAR nilvn KHEK_HUMAN : 701- 712: mivte Yme--Ngsl-DsfLR khdaq KSEK_MOUSE : 701- 712: miite Yme--Ngsl-DafLR kndgr P 16: 16.6802 11( 11) D-x-F-L-R Occurences: 11(11) KECK_HUMAN : 701- 705: engal DkFLR ekdge KEEK_HUMAN : 17- 21: engsl DtFLR KEEK_RAT : 89- 93: engsl DaFLR thdgq KEK4_CHICK : 708- 712: engsl DsFLR khdaq KEK4_MOUSE : 708- 712: engsl DsFLR khdaq KEK5_CHICK : 717- 721: engsl DsFLR qndgq KELK_RAT : 706- 710: engal DsFLR qndgq KEPH_HUMAN : 719- 723: engal DaFLR eredq KERK_HUMAN : 703- 707: engsl DsFLR qndgq KHEK_HUMAN : 708- 712: engsl DsFLR khdaq KSEK_MOUSE : 708- 712: engsl DaFLR kndgr Q 17: 15.6802 17( 11) S-x(0,1)-D-x(2)-L-x(0,1)-R Occurences: 17(11) KECK_HUMAN : 756- 762: lvckv S-DfgLsR vledd KEEK_HUMAN : 15- 21: ymeng SlDtfL-R KEEK_RAT : 87- 93: ymeng SlDafL-R thdgq KEEK_RAT : 144- 150: lvckv S-DfgLsR aledd KEK4_CHICK : 706- 712: ymeng SlDsfL-R khdaq KEK4_CHICK : 763- 769: lvckv S-DfgLsR vledd KEK4_MOUSE : 706- 712: ymeng SlDsfL-R khdaq KEK4_MOUSE : 763- 769: lvckv S-DfgLsR vledd KEK5_CHICK : 715- 721: fmeng SlDsfL-R qndgq KEK5_CHICK : 772- 778: lvckv S-DfgLsR fledd KELK_RAT : 761- 767: lvckv S-DfgLsR ylqdd KEPH_HUMAN : 774- 780: lcckv S-DfgLtR llddf KERK_HUMAN : 701- 707: fmeng SlDsfL-R qndgq KERK_HUMAN : 758- 764: lvckv S-DfgLsR fledd KHEK_HUMAN : 706- 712: ymeng SlDsfL-R khdaq KHEK_HUMAN : 763- 769: lvckv S-DfgLsR vledd KSEK_MOUSE : 706- 712: ymeng SlDafL-R kndgr R 18: 13.6399 15( 11) N-G-x(0,1)-S-x(2)-[AGNSTV] Occurences: 15(11) KECK_HUMAN : 416- 422: tvear NGvSglV tsrsf KEEK_HUMAN : 13- 18: teyme NG-SldT flr KEEK_RAT : 85- 90: teyme NG-SldA flrth KEK4_CHICK : 412- 418: eidav NGvSdlS tlsrq KEK4_CHICK : 704- 709: teyme NG-SldS flrkh KEK4_MOUSE : 412- 418: eidav NGvSelS spprq KEK4_MOUSE : 704- 709: teyme NG-SldS flrkh KEK5_CHICK : 713- 718: tefme NG-SldS flrqn KELK_RAT : 410- 416: diqai NGvSskS pfppq KEPH_HUMAN : 423- 429: nveaq NGvSglG ssgha KERK_HUMAN : 699- 704: tefme NG-SldS flrqn KHEK_HUMAN : 413- 419: eidav NGvSelS spprq KHEK_HUMAN : 704- 709: teyme NG-SldS flrkh KSEK_MOUSE : 417- 423: eiwav NGvSkyN pspdq KSEK_MOUSE : 704- 709: teyme NG-SldA flrkn S 19: 12.5102 13( 11) F-L-R Occurences: 13(11) KECK_HUMAN : 703- 705: galdk FLR ekdge KEEK_HUMAN : 19- 21: gsldt FLR KEEK_RAT : 48- 50: rqrqd FLR eaaim KEEK_RAT : 91- 93: gslda FLR thdgq KEK4_CHICK : 710- 712: gslds FLR khdaq KEK4_MOUSE : 710- 712: gslds FLR khdaq KEK5_CHICK : 719- 721: gslds FLR qndgq KELK_RAT : 708- 710: galds FLR qndgq KEPH_HUMAN : 678- 680: gqwwn FLR eatim KEPH_HUMAN : 721- 723: galda FLR eredq KERK_HUMAN : 705- 707: gslds FLR qndgq KHEK_HUMAN : 710- 712: gslds FLR khdaq KSEK_MOUSE : 710- 712: gslda FLR kndgr T 20: 12.5102 18( 11) V-x(4)-E-x-G Occurences: 18(11) KECK_HUMAN : 618- 625: vtrqk VigagEfG evykg KECK_HUMAN : 658- 665: tekqr VdflgEaG imgqf KEEK_HUMAN : 7- 14: rlami VteymEnG sldtf KEEK_RAT : 79- 86: rlami VteymEnG sldaf KEEK_RAT : 214- 221: mtnqd VissvEeG yrlpa KEK4_CHICK : 626- 633: isidk VvgagEfG evcsg KEK4_CHICK : 698- 705: kpvmi VteymEnG sldsf KEK4_MOUSE : 626- 633: isidk VvgagEfG evcsg KEK4_MOUSE : 698- 705: kpemi VteymEnG sldsf KEK5_CHICK : 635- 642: vkieq VigagEfG evcsg KELK_RAT : 624- 631: vkiee VigagEfG evykg KEPH_HUMAN : 637- 644: lmvdt VigegEfG evyrg KEPH_HUMAN : 843- 850: msnqe VmksiEdG yrlpp KERK_HUMAN : 621- 628: vkieq VigagEfG evcsg KHEK_HUMAN : 626- 633: isidk VvgagEfG evcsg KHEK_HUMAN : 698- 705: kpvmi VteymEnG sldsf KSEK_MOUSE : 626- 633: ikiek VigvgEfG evcsg KSEK_MOUSE : 833- 840: msnqd VikaiEeG yrlpp Number of patterns evaluated by Pratt:1017 Total running time: 2 seconds