------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file RDS_ROM1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RDS_ROM1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RDS_BOVIN 345 RDS_FELCA 346 RDS_HUMAN 346 RDS_MOUSE 346 RDS_RAT 346 ROM1_HUMAN 351 ROM1_MOUSE 351 Pratt run started at Thu Feb 6 20:59:46 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 145.9518 7( 7) D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C 2: 141.7817 7( 7) F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 3: 141.7817 7( 7) W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C 4: 137.6117 7( 7) Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 5: 137.6117 7( 7) G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P 6: 133.4416 7( 7) W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 7: 133.4416 7( 7) G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P 8: 133.4416 7( 7) C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N 9: 133.4416 7( 7) C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C 10: 129.2716 7( 7) S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 11: 125.1015 7( 7) R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 12: 120.9315 7( 7) Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 13: 116.7614 7( 7) L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 14: 116.7614 7( 7) Q-x(4)-C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V 15: 116.7614 7( 7) L-Q-x(4)-C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G 16: 112.5914 7( 7) D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 17: 112.5914 7( 7) D-x-L-Q-x(4)-C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G-x-Y-L 18: 108.4213 7( 7) V-x-D-R-I-x-S-N-V-x-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-x-Q 19: 108.4213 7( 7) K-x(3)-D-x-L-Q-x(4)-C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G 20: 107.9213 12( 7) K-x(2,3)-D-x-L-Q-x(4)-C-C-G-x(2)-G-x(2)-D-W-F-x(2)-Q-W-x-S-x-R-Y-L-D-x(5)-V-x-D-R-I-x-S-N-V-x-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 171.5707 7( 7) D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C B 2: 170.6873 7( 7) F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q C 3: 170.6873 7( 7) W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL] D 4: 169.6633 7( 7) G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P E 5: 168.6633 7( 7) G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P F 6: 168.6633 7( 7) C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N G 7: 168.6633 7( 7) C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C H 8: 166.5213 7( 7) Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL] I 9: 165.5267 7( 7) W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST] J 10: 164.9263 7( 7) L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G K 11: 164.9263 7( 7) Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V L 12: 163.9270 7( 7) S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS] M 13: 162.6305 7( 7) K-[KR]-x-[IMV]-D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G N 14: 160.7562 7( 7) D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L O 15: 160.7057 7( 7) R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A P 16: 160.7057 7( 7) Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H Q 17: 156.5356 7( 7) L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H R 18: 156.0862 12( 7) K-x(2,3)-D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G S 19: 155.5443 7( 7) V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H-x(2)-[FY]-D-x-[QR]-[QT]-[EP] T 20: 152.3656 7( 7) D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H Best patterns with alignements: fitness hits(seqs) Pattern A 1: 171.5707 7( 7) D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C Occurences: 7(7) RDS_BOVIN : 172- 221: nngfr DWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPC iqyql RDS_FELCA : 173- 222: nngfr DWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPC iqyql RDS_HUMAN : 173- 222: nngfr DWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPC iqyqi RDS_MOUSE : 173- 222: nngfr DWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPC iqyql RDS_RAT : 173- 222: nngfr DWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPC iqyql ROM1_HUMAN : 176- 225: rhgyk DWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPC lqnrl ROM1_MOUSE : 176- 225: rhgyk DWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPC lqsql B 2: 170.6873 7( 7) F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q Occurences: 7(7) RDS_BOVIN : 174- 223: gfrdw FEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQ yqltn RDS_FELCA : 175- 224: gfrdw FEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQ yqltn RDS_HUMAN : 175- 224: gfrdw FEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQ yqitn RDS_MOUSE : 175- 224: gfrdw FEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQ yqltn RDS_RAT : 175- 224: gfrdw FEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQ yqltn ROM1_HUMAN : 178- 227: gykdw FGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQ nrlsd ROM1_MOUSE : 178- 227: gykdw FGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQ sqlsd C 3: 170.6873 7( 7) W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL] Occurences: 7(7) RDS_BOVIN : 173- 222: ngfrd WFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCI qyqlt RDS_FELCA : 174- 223: ngfrd WFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCI qyqlt RDS_HUMAN : 174- 223: ngfrd WFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCI qyqit RDS_MOUSE : 174- 223: ngfrd WFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCI qyqlt RDS_RAT : 174- 223: ngfrd WFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCI qyqlt ROM1_HUMAN : 177- 226: hgykd WFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCL qnrls ROM1_MOUSE : 177- 226: hgykd WFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCL qsqls D 4: 169.6633 7( 7) G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P Occurences: 7(7) RDS_BOVIN : 169- 218: ccgnn GFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSP rpciq RDS_FELCA : 170- 219: ccgnn GFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSP rpciq RDS_HUMAN : 170- 219: ccgnn GFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSP rpciq RDS_MOUSE : 170- 219: ccgnn GFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSP rpciq RDS_RAT : 170- 219: ccgnn GFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSP rpciq ROM1_HUMAN : 173- 222: ccgrh GYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSP rpclq ROM1_MOUSE : 173- 222: ccgrh GYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSP rpclq E 5: 168.6633 7( 7) G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P Occurences: 7(7) RDS_BOVIN : 166- 215: efkcc GNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNP nsprp RDS_FELCA : 167- 216: efkcc GNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNP nsprp RDS_HUMAN : 167- 216: efkcc GNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNP ssprp RDS_MOUSE : 167- 216: efkcc GNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNP ssprp RDS_RAT : 167- 216: efkcc GNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNP ssprp ROM1_HUMAN : 170- 219: ryhcc GRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNP hsprp ROM1_MOUSE : 170- 219: ryhcc GRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNP hsprp F 6: 168.6633 7( 7) C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N Occurences: 7(7) RDS_BOVIN : 165- 214: iefkc CGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCN pnspr RDS_FELCA : 166- 215: iefkc CGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCN pnspr RDS_HUMAN : 166- 215: iefkc CGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCN psspr RDS_MOUSE : 166- 215: iefkc CGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCN psspr RDS_RAT : 166- 215: iefkc CGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCN psspr ROM1_HUMAN : 169- 218: lryhc CGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCN phspr ROM1_MOUSE : 169- 218: lryhc CGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCN phspr G 7: 168.6633 7( 7) C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C Occurences: 7(7) RDS_BOVIN : 164- 213: qiefk CCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCC npnsp RDS_FELCA : 165- 214: qiefk CCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCC npnsp RDS_HUMAN : 165- 214: qiefk CCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCC npssp RDS_MOUSE : 165- 214: qiefk CCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCC npssp RDS_RAT : 165- 214: qiefk CCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCC npssp ROM1_HUMAN : 168- 217: qlryh CCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCC nphsp ROM1_MOUSE : 168- 217: qlryh CCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCC nphsp H 8: 166.5213 7( 7) Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL] Occurences: 7(7) RDS_BOVIN : 177- 226: dwfei QWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQL tnnsa RDS_FELCA : 178- 227: dwfei QWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQL tnnsa RDS_HUMAN : 178- 227: dwfei QWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQI tnnsa RDS_MOUSE : 178- 227: dwfei QWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQL tnnsa RDS_RAT : 178- 227: dwfei QWISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQL tnnsa ROM1_HUMAN : 181- 230: dwfgv QWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRL sdsya ROM1_MOUSE : 181- 230: dwfgv QWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQL sdpya I 9: 165.5267 7( 7) W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST] Occurences: 7(7) RDS_BOVIN : 178- 227: wfeiq WISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLT nnsah RDS_FELCA : 179- 228: wfeiq WISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLT nnsah RDS_HUMAN : 179- 228: wfeiq WISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQIT nnsah RDS_MOUSE : 179- 228: wfeiq WISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLT nnsah RDS_RAT : 179- 228: wfeiq WISNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLT nnsah ROM1_HUMAN : 182- 231: wfgvq WVSSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLS dsyah ROM1_MOUSE : 182- 231: wfgvq WVSNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLS dpyah J 10: 164.9263 7( 7) L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G Occurences: 7(7) RDS_BOVIN : 158- 207: ktidm LQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDG vpfsc RDS_FELCA : 159- 208: ktidl LQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDG vpfsc RDS_HUMAN : 159- 208: ktidm LQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDG vpfsc RDS_MOUSE : 159- 208: ktidm LQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDG vpfsc RDS_RAT : 159- 208: ktidm LQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDG vpfsc ROM1_HUMAN : 162- 211: rlvde LQLRYHCCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDG vpfsc ROM1_MOUSE : 162- 211: rlmde LQLRYHCCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDG vpfsc K 11: 164.9263 7( 7) Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V Occurences: 7(7) RDS_BOVIN : 159- 208: tidml QIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGV pfscc RDS_FELCA : 160- 209: tidll QIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGV pfscc RDS_HUMAN : 160- 209: tidml QIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGV pfscc RDS_MOUSE : 160- 209: tidml QIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGV pfscc RDS_RAT : 160- 209: tidml QIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYLvDGV pfscc ROM1_HUMAN : 163- 212: lvdel QLRYHCCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYLtDGV pfscc ROM1_MOUSE : 163- 212: lmdel QLRYHCCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYLiDGV pfscc L 12: 163.9270 7( 7) S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS] Occurences: 7(7) RDS_BOVIN : 180- 229: eiqwi SNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNN sahys RDS_FELCA : 181- 230: eiqwi SNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNN sahys RDS_HUMAN : 181- 230: eiqwi SNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNN sahys RDS_MOUSE : 181- 230: eiqwi SNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNN sahys RDS_RAT : 181- 230: eiqwi SNRYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNN sahys ROM1_HUMAN : 184- 233: gvqwv SSRYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDS yahpl ROM1_MOUSE : 184- 233: gvqwv SNRYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDP yahpl M 13: 162.6305 7( 7) K-[KR]-x-[IMV]-D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G Occurences: 7(7) RDS_BOVIN : 152- 201: grcfm KKtIDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_FELCA : 153- 202: grcfm KKtIDlLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_HUMAN : 153- 202: grcfm KKtIDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_MOUSE : 153- 202: grcfm KKtIDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_RAT : 153- 202: grcfm KKtIDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd ROM1_HUMAN : 156- 205: ghcqa KRlVDeLQLRYHCCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEG lyltd ROM1_MOUSE : 156- 205: grcqa KRlMDeLQLRYHCCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEG lylid N 14: 160.7562 7( 7) D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L Occurences: 7(7) RDS_BOVIN : 156- 204: mkkti DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYL vdgvp RDS_FELCA : 157- 205: mkkti DlLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYL vdgvp RDS_HUMAN : 157- 205: mkkti DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYL vdgvp RDS_MOUSE : 157- 205: mkkti DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYL vdgvp RDS_RAT : 157- 205: mkkti DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDGrYL vdgvp ROM1_HUMAN : 160- 208: akrlv DeLQLRYHCCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEGlYL tdgvp ROM1_MOUSE : 160- 208: akrlm DeLQLRYHCCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEGlYL idgvp O 15: 160.7057 7( 7) R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A Occurences: 7(7) RDS_BOVIN : 182- 231: qwisn RYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsA hysyd RDS_FELCA : 183- 232: qwisn RYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsA hysyd RDS_HUMAN : 183- 232: qwisn RYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNNsA hysyd RDS_MOUSE : 183- 232: qwisn RYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsA hysyd RDS_RAT : 183- 232: qwisn RYLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsA hysyd ROM1_HUMAN : 186- 235: qwvss RYLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDSyA hplfd ROM1_MOUSE : 186- 235: qwvsn RYLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDPyA hplfd P 16: 160.7057 7( 7) Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H Occurences: 7(7) RDS_BOVIN : 183- 232: wisnr YLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_FELCA : 184- 233: wisnr YLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_HUMAN : 184- 233: wisnr YLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNNsAH ysydh RDS_MOUSE : 184- 233: wisnr YLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh RDS_RAT : 184- 233: wisnr YLDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh ROM1_HUMAN : 187- 236: wvssr YLDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDSyAH plfdp ROM1_MOUSE : 187- 236: wvsnr YLDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDPyAH plfdp Q 17: 156.5356 7( 7) L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H Occurences: 7(7) RDS_BOVIN : 184- 232: isnry LDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_FELCA : 185- 233: isnry LDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_HUMAN : 185- 233: isnry LDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNNsAH ysydh RDS_MOUSE : 185- 233: isnry LDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh RDS_RAT : 185- 233: isnry LDfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh ROM1_HUMAN : 188- 236: vssry LDpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDSyAH plfdp ROM1_MOUSE : 188- 236: vsnry LDpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDPyAH plfdp R 18: 156.0862 12( 7) K-x(2,3)-D-x-L-Q-[IL]-[ER]-[FY]-[HK]-C-C-G-[NR]-x-G-[FY]-[KR]-D-W-F-[EG]-[IV]-Q-W-[IV]-S-[NS]-R-Y-L-D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G Occurences: 12(7) RDS_BOVIN : 152- 201: grcfm KktiDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_BOVIN : 153- 201: rcfmk Kti-DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_FELCA : 153- 202: grcfm KktiDlLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_FELCA : 154- 202: rcfmk Kti-DlLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_HUMAN : 153- 202: grcfm KktiDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_HUMAN : 154- 202: rcfmk Kti-DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_MOUSE : 153- 202: grcfm KktiDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_MOUSE : 154- 202: rcfmk Kti-DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_RAT : 153- 202: grcfm KktiDmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd RDS_RAT : 154- 202: rcfmk Kti-DmLQIEFKCCGNnGFRDWFEIQWISNRYLDfSSkEVkDRIkSNVDG rylvd ROM1_HUMAN : 156- 205: ghcqa KrlvDeLQLRYHCCGRhGYKDWFGVQWVSSRYLDpGDrDVaDRIqSNVEG lyltd ROM1_MOUSE : 156- 205: grcqa KrlmDeLQLRYHCCGRhGYKDWFGVQWVSNRYLDpSDqDVvDRIqSNVEG lylid S 19: 155.5443 7( 7) V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H-x(2)-[FY]-D-x-[QR]-[QT]-[EP] Occurences: 7(7) RDS_BOVIN : 191- 240: fsske VkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAHysYDhQTE elnlw RDS_FELCA : 192- 241: fsske VkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAHysYDhQTE elnlw RDS_HUMAN : 192- 241: fsske VkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNNsAHysYDhQTE elnlw RDS_MOUSE : 192- 241: fsske VkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAHysYDhQTE elnlw RDS_RAT : 192- 241: fsske VkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAHysYDhQTE elnlw ROM1_HUMAN : 195- 244: pgdrd VaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDSyAHplFDpRQP nqnlw ROM1_MOUSE : 195- 244: psdqd VvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDPyAHplFDpRQP nlnlw T 20: 152.3656 7( 7) D-x-[GS]-[DS]-x-[DE]-V-x-D-R-I-x-S-N-V-[DE]-G-x-Y-L-x-D-G-V-P-F-S-C-C-N-P-x-S-P-R-P-C-[IL]-Q-x-[QR]-[IL]-[ST]-[DN]-[NPS]-x-A-H Occurences: 7(7) RDS_BOVIN : 185- 232: snryl DfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_FELCA : 186- 233: snryl DfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPnSPRPCIQyQLTNNsAH ysydh RDS_HUMAN : 186- 233: snryl DfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQITNNsAH ysydh RDS_MOUSE : 186- 233: snryl DfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh RDS_RAT : 186- 233: snryl DfSSkEVkDRIkSNVDGrYLvDGVPFSCCNPsSPRPCIQyQLTNNsAH ysydh ROM1_HUMAN : 189- 236: ssryl DpGDrDVaDRIqSNVEGlYLtDGVPFSCCNPhSPRPCLQnRLSDSyAH plfdp ROM1_MOUSE : 189- 236: snryl DpSDqDVvDRIqSNVEGlYLiDGVPFSCCNPhSPRPCLQsQLSDPyAH plfdp Number of patterns evaluated by Pratt:33651 Total running time: 8 seconds