------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file RCC1_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RCC1_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PGLR_TOBAC 396 RCC_DROME 547 RCC_HUMAN 421 RCC_MESAU 421 RCC_SCHPO 539 RCC_XENLA 424 RCC_YEAST 482 Pratt run started at Thu Feb 6 20:59:40 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.3503 8( 7) L-x(3)-G-x(4,5)-G-x(2)-D-x(4)-G 2: 19.8503 9( 7) D-x(4,5)-L-x(3)-G-x(0,1)-V-x(3)-G 3: 19.8503 7( 7) G-x-G-x(5)-G-x(1,2)-G-x(3,4)-D 4: 19.3503 15( 7) V-x(3)-G-x(5)-Q-x(0,2)-L-x(0,1)-G 5: 16.1802 13( 7) L-x(3)-G-x(0,1)-V-x(3)-G 6: 16.1802 7( 7) D-x(4)-L-x(3)-G-x(4,5)-G 7: 16.1802 11( 7) V-x(2,3)-G-x-G-x(5)-G 8: 16.1802 8( 7) G-x(2)-D-x(4)-G-x(2,3)-S 9: 16.1802 12( 7) G-x(4,5)-G-x(2)-D-x(4)-G 10: 15.6802 13( 7) G-x(3,5)-G-x(2)-D-x(4)-G 11: 15.6802 9( 7) S-x-G-x(2,3)-E-x(3,4)-G 12: 15.6802 8( 7) S-x(1,2)-G-x(2,3)-E-x(4)-G 13: 15.6802 8( 7) L-x(4,5)-G-x(0,1)-V-x(3)-G 14: 15.6802 18( 7) L-x(3,4)-G-x(0,1)-V-x(3)-G 15: 15.6802 11( 7) G-x-L-G-x(1,3)-D 16: 15.6802 7( 7) G-x(3,4)-V-x(0,1)-G-x-L 17: 15.6802 7( 7) G-x(5)-G-x(1,2)-G-x(3,4)-D 18: 15.6802 7( 7) L-x(4,5)-V-x(2,3)-G-x-G 19: 15.6802 7( 7) S-x-G-x(3,4)-S-x(3,4)-E 20: 15.6802 7( 7) N-x(0,1)-D-x(2,3)-A-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 34.1148 7( 7) L-x(3)-G-x(4,5)-G-x(2)-D-x(4)-G-x-[DNP]-x-[DNS]-x(2)-[GIP]-[ES]-x(4)-[DGN] B 2: 32.2717 7( 7) N-x(0,1)-D-x(2,3)-A-L-[GL]-[NR]-x(4)-[ADEQ]-x-[DEQS]-[EQS]-x(2)-[DP] C 3: 30.0374 7( 7) D-x(4,5)-L-x-[DEST]-x-G-x(0,1)-V-x(3)-G-x(3)-[DGQ]-x(3)-[GIV]-x(4)-[EKR] D 4: 28.0552 7( 7) D-x-[ILV]-x(2)-L-x(3)-G-x(4,5)-G-x-[AEG]-x-[GQ]-x(3)-[GI] E 5: 27.6752 7( 7) S-x-G-x(2,3)-E-x(3,4)-G-x(2)-[DEPT]-x-[ADET]-x-[DEGS]-x(4)-[PT]-x(3)-[DNRS] F 6: 26.8566 10( 7) V-[FIL]-[APTV]-x-G-x(2)-[DQT]-x(2)-Q-x(0,2)-L-x(0,1)-G G 7: 25.9125 8( 7) G-x(4,5)-G-x(2)-D-x(4)-G-x-[DGNP]-x-[DNS]-x(3)-[ERS]-x(4)-[DGNP] H 8: 25.4125 8( 7) G-x(3,5)-G-x(2)-D-x(4)-G-x-[DGNP]-x-[DNS]-x(3)-[ERS]-x(4)-[DGNP] I 9: 25.2722 7( 7) G-x-G-x(3)-[AEQS]-[LV]-G-x(1,2)-G-x(3,4)-D J 10: 24.8085 7( 7) V-x(2,3)-G-[NPQS]-G-x(3)-[QS]-[LV]-G K 11: 24.7461 7( 7) S-x(1,2)-G-x(2,3)-E-x(3)-[LV]-G-x-[GI]-[DEP] L 12: 24.6804 7( 7) G-[CV]-x-D-x-[AGT]-x(2)-G-x(2,3)-S-x-[ADE] M 13: 23.7248 7( 7) G-x(3,4)-V-x(0,1)-G-[AQS]-L-[GS]-x(3)-[DNSV] N 14: 21.1022 7( 7) G-x(3)-[AEQS]-[LV]-G-x(1,2)-G-x(3,4)-D O 15: 20.9992 7( 7) L-x-[DEST]-[DEK]-G-x(0,1)-V-x(3)-G P 16: 19.5341 11( 7) L-x(3,4)-G-x(0,1)-V-x(3)-G-x-[ADEGN]-x-[DEGNQ] Q 17: 18.3308 7( 7) L-x(4,5)-G-x(0,1)-V-x(3)-G-x-[DEG] R 18: 17.8680 9( 7) D-x(4,5)-L-x-[DEST]-x-G-x(0,1)-V S 19: 17.5822 7( 7) S-[ADEGT]-G-x(3,4)-S-x(3,4)-E T 20: 15.6802 11( 7) G-x-L-G-x(1,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 34.1148 7( 7) L-x(3)-G-x(4,5)-G-x(2)-D-x(4)-G-x-[DNP]-x-[DNS]-x(2)-[GIP]-[ES]-x(4)-[DGN] Occurences: 7(7) PGLR_TOBAC : 16- 46: lvllf LahfGesqt-GvfDitkyGaNsNadISeallN afkea RCC_DROME : 89- 120: mhnlv LtksGdiysfGcnDegalGrDtSedGSeskpD lidlp RCC_HUMAN : 82- 113: mhtvc LsksGqvysfGcnDegalGrDtSveGSemvpG kvelq RCC_MESAU : 82- 113: mhtvc LnqsGqvysfGcnDegalGrDtSveGSemvpG kvelq RCC_SCHPO : 351- 382: hhtla LledGrvlawGrdDrhqlGiPdNalPEtvvkD ekgnn RCC_XENLA : 88- 119: mhtvc LgasGsiytfGcnDegalGrDtSeeGSemqpG kvela RCC_YEAST : 345- 376: hhsli LsqdGdlyscGrlDmfevGiPkDnlPEytykD vhgka B 2: 32.2717 7( 7) N-x(0,1)-D-x(2,3)-A-L-[GL]-[NR]-x(4)-[ADEQ]-x-[DEQS]-[EQS]-x(2)-[DP] Occurences: 7(7) PGLR_TOBAC : 37- 57: ygans NaDiseALLNafkeAcQStsP stivi RCC_DROME : 101- 119: ysfgc N-Deg-ALGRdtseDgSEskP dlidl RCC_HUMAN : 94- 112: ysfgc N-Deg-ALGRdtsvEgSEmvP gkvel RCC_MESAU : 94- 112: ysfgc N-Deg-ALGRdtsvEgSEmvP gkvel RCC_SCHPO : 135- 153: ytwgv N-Ddy-ALGRltkdQkDEngD kvdnd RCC_XENLA : 100- 118: ytfgc N-Deg-ALGRdtseEgSEmqP gkvel RCC_YEAST : 111- 129: wswgc N-Dvg-ALGRdtsnAkEQlkD mdadd C 3: 30.0374 7( 7) D-x(4,5)-L-x-[DEST]-x-G-x(0,1)-V-x(3)-G-x(3)-[DGQ]-x(3)-[GIV]-x(4)-[EKR] Occurences: 7(7) PGLR_TOBAC : 337- 364: tsrtq Davsl-LrSkG-VpceGievGdidItysgK egpak RCC_DROME : 188- 216: iasga Dhlvi-LtTaGkVftvGcaeQgqlGrlseR sisge RCC_HUMAN : 128- 157: qvsag DshtaaLtDdGrVflwGsfrDnngVigllE pmkks RCC_MESAU : 128- 157: qvsag DshtaaLtEdGrVflwGsfrDnngVigllE pmkks RCC_SCHPO : 236- 264: latgt Dhiia-LtTtGkVytwGngqQfqlGrrmlE rrrlq RCC_XENLA : 134- 163: qvsag DshtaaLtEdGrVfvfGsfrDnngVigllE pmkks RCC_YEAST : 231- 259: lapgk Dhilf-LdEeGmVfawGngqQnqlGrkvmE rfrlk D 4: 28.0552 7( 7) D-x-[ILV]-x(2)-L-x(3)-G-x(4,5)-G-x-[AEG]-x-[GQ]-x(3)-[GI] Occurences: 7(7) PGLR_TOBAC : 337- 359: tsrtq DaVslLrskGvpce-GiEvGdidI tysgk RCC_DROME : 188- 211: iasga DhLviLttaGkvftvGcAeQgqlG rlser RCC_HUMAN : 182- 205: vasgn DhLvmLtadGdlytlGcGeQgqlG rvpel RCC_MESAU : 182- 205: vasgn DhLvmLttdGdlytlGcGeQgqlG rvpel RCC_SCHPO : 236- 259: latgt DhIiaLtttGkvytwGnGqQfqlG rrmle RCC_XENLA : 188- 211: iasgn DhLvlLtvdGdlytsGcGeQgqlG rvper RCC_YEAST : 231- 254: lapgk DhIlfLdeeGmvfawGnGqQnqlG rkvme E 5: 27.6752 7( 7) S-x-G-x(2,3)-E-x(3,4)-G-x(2)-[DEPT]-x-[ADET]-x-[DEGS]-x(4)-[PT]-x(3)-[DNRS] Occurences: 7(7) PGLR_TOBAC : 344- 371: vsllr SkGvpcEgievGdiDiTySgkegPaksS cenik RCC_DROME : 97- 123: sgdiy SfGcndEgal-GrdTsEdGseskPdliD lpgka RCC_HUMAN : 317- 343: egkay SlGra-EygrlGlgEgAeEksipTlisR lpavs RCC_MESAU : 317- 343: egkay SlGra-EygrlGlgEgAeEksipTlisR lpvvs RCC_SCHPO : 423- 449: dgkvy SwGsa-EnyevGqgDnDeDvavpTlvrS kaike RCC_XENLA : 322- 348: egkay SlGra-EygrlGlgEnAeEqsepTpipD lpkin RCC_YEAST : 417- 443: ngiay SwGfg-EtyavGlgPfEdDtevpTrikN tatqd F 6: 26.8566 10( 7) V-[FIL]-[APTV]-x-G-x(2)-[DQT]-x(2)-Q-x(0,2)-L-x(0,1)-G Occurences: 10(7) PGLR_TOBAC : 61- 76: spsti VIPkGtfTmnQvkLeG pcksp RCC_DROME : 44- 56: tvlgn VLVcGngDvgQ--L-G lgedi RCC_DROME : 44- 58: tvlgn VLVcGngDvgQlgL-G edile RCC_HUMAN : 37- 49: tepgl VLTlGqgDvgQ--L-G lgenv RCC_HUMAN : 37- 51: tepgl VLTlGqgDvgQlgL-G envme RCC_HUMAN : 366- 378: tkdgr VFAwGmgTnyQ--L-G tgqde RCC_MESAU : 37- 49: tepgl VLTlGqgDvgQ--L-G lgesv RCC_MESAU : 37- 51: tepgl VLTlGqgDvgQlgL-G esvle RCC_MESAU : 366- 378: skdgr VFAwGmgTnyQ--L-G tgqde RCC_SCHPO : 357- 369: ledgr VLAwGrdDrhQ--L-G ipdna RCC_XENLA : 43- 55: tvggq VLTlGqgDvgQ--L-G lgedi RCC_XENLA : 43- 57: tvggq VLTlGqgDvgQlgL-G edime RCC_XENLA : 371- 383: stdgc VFAwGmgTnlQ--L-G tgeee RCC_YEAST : 242- 254: deegm VFAwGngQqnQ--L-G rkvme G 7: 25.9125 8( 7) G-x(4,5)-G-x(2)-D-x(4)-G-x-[DGNP]-x-[DNS]-x(3)-[ERS]-x(4)-[DGNP] Occurences: 8(7) PGLR_TOBAC : 20- 46: flahf Gesqt-GvfDitkyGaNsNadiSeallN afkea RCC_DROME : 42- 69: rrtvl GnvlvcGngDvgqlGlGeDileRkrlsP vagip RCC_DROME : 93- 120: vltks GdiysfGcnDegalGrDtSedgSeskpD lidlp RCC_HUMAN : 86- 113: clsks GqvysfGcnDegalGrDtSvegSemvpG kvelq RCC_MESAU : 86- 113: clnqs GqvysfGcnDegalGrDtSvegSemvpG kvelq RCC_SCHPO : 355- 382: alled GrvlawGrdDrhqlGiPdNalpEtvvkD ekgnn RCC_XENLA : 92- 119: clgas GsiytfGcnDegalGrDtSeegSemqpG kvela RCC_YEAST : 349- 376: ilsqd GdlyscGrlDmfevGiPkDnlpEytykD vhgka H 8: 25.4125 8( 7) G-x(3,5)-G-x(2)-D-x(4)-G-x-[DGNP]-x-[DNS]-x(3)-[ERS]-x(4)-[DGNP] Occurences: 8(7) PGLR_TOBAC : 20- 46: flahf Gesqt-GvfDitkyGaNsNadiSeallN afkea RCC_DROME : 42- 69: rrtvl GnvlvcGngDvgqlGlGeDileRkrlsP vagip RCC_DROME : 93- 120: vltks GdiysfGcnDegalGrDtSedgSeskpD lidlp RCC_HUMAN : 86- 113: clsks GqvysfGcnDegalGrDtSvegSemvpG kvelq RCC_MESAU : 86- 113: clnqs GqvysfGcnDegalGrDtSvegSemvpG kvelq RCC_SCHPO : 355- 382: alled GrvlawGrdDrhqlGiPdNalpEtvvkD ekgnn RCC_XENLA : 92- 119: clgas GsiytfGcnDegalGrDtSeegSemqpG kvela RCC_YEAST : 349- 376: ilsqd GdlyscGrlDmfevGiPkDnlpEytykD vhgka I 9: 25.2722 7( 7) G-x-G-x(3)-[AEQS]-[LV]-G-x(1,2)-G-x(3,4)-D Occurences: 7(7) PGLR_TOBAC : 233- 248: trvtc GpGhgiSVGslGgnp-D ekpvv RCC_DROME : 370- 384: klysw GsGvnnQLGv-Gdgd-D elepi RCC_HUMAN : 370- 384: rvfaw GmGtnyQLGt-Gqde-D awspv RCC_MESAU : 370- 384: rvfaw GmGtnyQLGt-Gqde-D awspv RCC_SCHPO : 77- 92: nvyvf GsGsmnELGm-GeeemD vvyrp RCC_XENLA : 375- 389: cvfaw GmGtnlQLGt-Geee-D vwspe RCC_YEAST : 419- 433: iaysw GfGetyAVGl-Gpfe-D dtevp RCC_YEAST : 419- 434: iaysw GfGetyAVGl-GpfedD tevpt J 10: 24.8085 7( 7) V-x(2,3)-G-[NPQS]-G-x(3)-[QS]-[LV]-G Occurences: 7(7) PGLR_TOBAC : 230- 241: lyitr Vtc-GPGhgiSVG slggn RCC_DROME : 44- 56: tvlgn VlvcGNGdvgQLG lgedi RCC_HUMAN : 37- 49: tepgl VltlGQGdvgQLG lgenv RCC_MESAU : 37- 49: tepgl VltlGQGdvgQLG lgesv RCC_SCHPO : 247- 259: tttgk VytwGNGqqfQLG rrmle RCC_XENLA : 43- 55: tvggq VltlGQGdvgQLG lgedi RCC_YEAST : 242- 254: deegm VfawGNGqqnQLG rkvme K 11: 24.7461 7( 7) S-x(1,2)-G-x(2,3)-E-x(3)-[LV]-G-x-[GI]-[DEP] Occurences: 7(7) PGLR_TOBAC : 344- 358: vsllr Sk-GvpcEgieVGdID itysg RCC_DROME : 315- 329: tdlkc SvvGrp-EygrLGlGD vkdvv RCC_HUMAN : 317- 330: egkay Sl-Gra-EygrLGlGE gaeek RCC_MESAU : 317- 330: egkay Sl-Gra-EygrLGlGE gaeek RCC_SCHPO : 423- 436: dgkvy Sw-Gsa-EnyeVGqGD ndedv RCC_XENLA : 322- 335: egkay Sl-Gra-EygrLGlGE naeeq RCC_YEAST : 417- 430: ngiay Sw-Gfg-EtyaVGlGP feddt L 12: 24.6804 7( 7) G-[CV]-x-D-x-[AGT]-x(2)-G-x(2,3)-S-x-[ADE] Occurences: 7(7) PGLR_TOBAC : 25- 38: gesqt GVfDiTkyGan-SnA disea RCC_DROME : 99- 113: diysf GCnDeGalGrdtSeD gsesk RCC_HUMAN : 92- 106: qvysf GCnDeGalGrdtSvE gsemv RCC_MESAU : 92- 106: qvysf GCnDeGalGrdtSvE gsemv RCC_SCHPO : 109- 122: stdkv GVvDlAvgGmh-SaA llhdg RCC_XENLA : 98- 112: siytf GCnDeGalGrdtSeE gsemq RCC_YEAST : 109- 123: nvwsw GCnDvGalGrdtSnA keqlk M 13: 23.7248 7( 7) G-x(3,4)-V-x(0,1)-G-[AQS]-L-[GS]-x(3)-[DNSV] Occurences: 7(7) PGLR_TOBAC : 235- 248: vtcgp GhgisV-GSLGgnpD ekpvv RCC_DROME : 48- 60: nvlvc Gngd-V-GQLGlgeD ilerk RCC_HUMAN : 41- 53: lvltl Gqgd-V-GQLGlgeN vmerk RCC_MESAU : 41- 53: lvltl Gqgd-V-GQLGlgeS vlerk RCC_SCHPO : 162- 176: ndlle GtpskVeGALShlrV tkvic RCC_XENLA : 47- 59: qvltl Gqgd-V-GQLGlgeD imerk RCC_YEAST : 109- 121: nvwsw Gcnd-V-GALGrdtS nakeq N 14: 21.1022 7( 7) G-x(3)-[AEQS]-[LV]-G-x(1,2)-G-x(3,4)-D Occurences: 7(7) PGLR_TOBAC : 235- 248: vtcgp GhgiSVGslGgnp-D ekpvv RCC_DROME : 372- 384: yswgs GvnnQLGv-Gdgd-D elepi RCC_HUMAN : 372- 384: fawgm GtnyQLGt-Gqde-D awspv RCC_MESAU : 372- 384: fawgm GtnyQLGt-Gqde-D awspv RCC_SCHPO : 79- 92: yvfgs GsmnELGm-GeeemD vvyrp RCC_XENLA : 377- 389: fawgm GtnlQLGt-Geee-D vwspe RCC_YEAST : 421- 433: yswgf GetyAVGl-Gpfe-D dtevp RCC_YEAST : 421- 434: yswgf GetyAVGl-GpfedD tevpt O 15: 20.9992 7( 7) L-x-[DEST]-[DEK]-G-x(0,1)-V-x(3)-G Occurences: 7(7) PGLR_TOBAC : 342- 351: davsl LrSKG-VpceG ievgd RCC_DROME : 141- 151: shsac LlEDGrVfawG sfrds RCC_HUMAN : 134- 144: shtaa LtDDGrVflwG sfrdn RCC_MESAU : 134- 144: shtaa LtEDGrVflwG sfrdn RCC_SCHPO : 351- 361: hhtla LlEDGrVlawG rddrh RCC_XENLA : 140- 150: shtaa LtEDGrVfvfG sfrdn RCC_YEAST : 236- 246: dhilf LdEEGmVfawG ngqqn P 16: 19.5341 11( 7) L-x(3,4)-G-x(0,1)-V-x(3)-G-x-[ADEGN]-x-[DEGNQ] Occurences: 11(7) PGLR_TOBAC : 341- 355: qdavs LlrskG-VpceGiEvG didit PGLR_TOBAC : 342- 355: davsl Lrsk-G-VpceGiEvG didit RCC_DROME : 45- 60: vlgnv LvcgnGdVgqlGlGeD ilerk RCC_DROME : 193- 207: dhlvi Ltta-GkVftvGcAeQ gqlgr RCC_HUMAN : 38- 53: epglv LtlgqGdVgqlGlGeN vmerk RCC_HUMAN : 82- 96: mhtvc Lsks-GqVysfGcNdE galgr RCC_MESAU : 82- 96: mhtvc Lnqs-GqVysfGcNdE galgr RCC_SCHPO : 123- 137: mhsaa Llhd-GrVytwGvNdD yalgr RCC_SCHPO : 241- 255: dhiia Lttt-GkVytwGnGqQ fqlgr RCC_XENLA : 44- 59: vggqv LtlgqGdVgqlGlGeD imerk RCC_YEAST : 236- 250: dhilf Ldee-GmVfawGnGqQ nqlgr Q 17: 18.3308 7( 7) L-x(4,5)-G-x(0,1)-V-x(3)-G-x-[DEG] Occurences: 7(7) PGLR_TOBAC : 341- 353: qdavs Llrsk-G-VpceGiE vgdid RCC_DROME : 45- 58: vlgnv Lvcgn-GdVgqlGlG edile RCC_HUMAN : 38- 51: epglv Ltlgq-GdVgqlGlG envme RCC_MESAU : 38- 51: epglv Ltlgq-GdVgqlGlG esvle RCC_SCHPO : 349- 363: gehht LalledGrVlawGrD drhql RCC_XENLA : 44- 57: vggqv Ltlgq-GdVgqlGlG edime RCC_YEAST : 234- 248: gkdhi LfldeeGmVfawGnG qqnql R 18: 17.8680 9( 7) D-x(4,5)-L-x-[DEST]-x-G-x(0,1)-V Occurences: 9(7) PGLR_TOBAC : 337- 347: tsrtq Davsl-LrSkG-V pcegi RCC_DROME : 135- 147: cisag DshsacLlEdGrV fawgs RCC_DROME : 188- 199: iasga Dhlvi-LtTaGkV ftvgc RCC_HUMAN : 128- 140: qvsag DshtaaLtDdGrV flwgs RCC_MESAU : 128- 140: qvsag DshtaaLtEdGrV flwgs RCC_SCHPO : 236- 247: latgt Dhiia-LtTtGkV ytwgn RCC_XENLA : 134- 146: qvsag DshtaaLtEdGrV fvfgs RCC_YEAST : 174- 186: qlaat DnmscaLfSnGeV yawgt RCC_YEAST : 231- 242: lapgk Dhilf-LdEeGmV fawgn S 19: 17.5822 7( 7) S-[ADEGT]-G-x(3,4)-S-x(3,4)-E Occurences: 7(7) PGLR_TOBAC : 210- 221: tdsnf STGddciSvgd-E teqly RCC_DROME : 132- 143: kalci SAGdsh-SacllE dgrvf RCC_HUMAN : 311- 322: tvcmd SEGkay-SlgraE ygrlg RCC_MESAU : 311- 322: ticmd SEGkay-SlgraE ygrlg RCC_SCHPO : 417- 428: nlavt SDGkvy-SwgsaE nyevg RCC_XENLA : 316- 327: tvcvd SEGkay-SlgraE ygrlg RCC_YEAST : 463- 474: gqfsv SGGvkl-SdedaE krade T 20: 15.6802 11( 7) G-x-L-G-x(1,3)-D Occurences: 11(7) PGLR_TOBAC : 241- 248: hgisv GsLGgnpD ekpvv RCC_DROME : 53- 60: gngdv GqLGlgeD ilerk RCC_DROME : 104- 109: gcnde GaLGr--D tsedg RCC_DROME : 323- 329: grpey GrLGlg-D vkdvv RCC_HUMAN : 97- 102: gcnde GaLGr--D tsveg RCC_MESAU : 97- 102: gcnde GaLGr--D tsveg RCC_SCHPO : 206- 212: frcsd GvLGys-D sqkrt RCC_XENLA : 52- 59: gqgdv GqLGlgeD imerk RCC_XENLA : 103- 108: gcnde GaLGr--D tseeg RCC_YEAST : 114- 119: gcndv GaLGr--D tsnak RCC_YEAST : 197- 204: frcne GiLGfyqD kikiq Number of patterns evaluated by Pratt:10132 Total running time: 6 seconds