------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file RCC1_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RCC1_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RCC_DROME 547 RCC_HUMAN 421 RCC_MESAU 421 RCC_SCHPO 539 RCC_XENLA 424 RCC_YEAST 482 Pratt run started at Thu Feb 6 20:59:29 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 53.7107 6( 6) A-x-G-x-D-H-x(3)-L-x(3)-G-x(5)-G-x(3)-Q-x-Q-L-G-R-x(2,3)-E 2: 49.5406 6( 6) G-x-D-H-x(3)-L-x(3)-G-x(5)-G-x(3)-Q-x-Q-L-G-R-x(2,3)-E 3: 45.3706 6( 6) D-H-x(3)-L-x(3)-G-x(5)-G-x(3)-Q-x-Q-L-G-R-x(2,3)-E 4: 44.3706 6( 6) D-x-V-x(3,5)-A-x(0,1)-G-x(2)-H-x(3)-L-x(3)-G-x(2)-Y-x(2)-G-x(2)-D-x(4)-G 5: 40.7005 8( 6) V-x(3,4)-A-x(0,1)-G-x(2)-H-x(3)-L-x(3)-G-x(2)-Y-x(2)-G-x(2)-D-x(4)-G 6: 40.7005 6( 6) V-x(4)-G-x(2)-H-x(3)-L-x(3)-G-x(5)-G-x(0,1)-N-x(4,5)-L-G-R 7: 37.0305 7( 6) A-x-G-x(1,2)-H-x(3)-L-x(3)-G-x(2)-Y-x(2)-G-x(2)-D-x(4)-G 8: 36.5305 6( 6) L-x(2,3)-G-x(5)-G-x(3)-Q-x-Q-L-G-R-x(2,3)-E 9: 36.0305 10( 6) A-x(1,3)-G-x(1,2)-H-x(3)-L-x(3)-G-x(2)-Y-x(2)-G-x(2)-D-x(4)-G 10: 33.3604 6( 6) G-x-N-D-x(2)-A-L-G-R-x-T 11: 32.3604 6( 6) H-x(0,1)-L-x(1,2)-L-x(3)-G-x(5)-G-x(5)-Q-L-G 12: 31.8604 14( 6) V-x(2,4)-A-x(0,1)-G-x(2)-H-x(3)-L-x(3)-G-x-V-x(3)-G 13: 31.8604 8( 6) L-x(4)-V-x(3,5)-A-x(0,1)-G-x(2)-H-x(3)-L-x(3)-G-x(5)-G 14: 31.3604 6( 6) S-V-x(2)-G-x(1,3)-S-x(1,3)-A-x(4)-G-x(4)-W-G 15: 29.1904 9( 6) G-x-V-x(3)-G-x-G-x(3)-Q-L-G 16: 29.1904 6( 6) G-x(4)-W-G-x-G-x(3)-Q-L-G 17: 28.6904 8( 6) S-x(0,1)-V-x(2)-G-x(5)-A-x(4)-G-x(4)-W-G 18: 28.6904 6( 6) V-x(3,4)-A-x-G-x(2)-H-x(3)-L-x(3)-G-x(5)-G 19: 28.6904 10( 6) A-x(0,1)-G-x(2)-H-x(3)-L-x(3)-G-x-V-x(3)-G 20: 28.1904 12( 6) V-x(2,3)-A-x-G-x(1,2)-H-x(3)-L-x(3)-G-x(5)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 86.7473 6( 6) A-[PST]-G-x-D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E B 2: 82.9381 6( 6) V-x(3,4)-A-[ASV]-G-[AEGN]-x-H-x-[ALV]-x-L-x(2)-[AD]-G-[DKR]-[LV]-[FY]-[ST]-x-G-x(2)-[DE]-x(2)-[AEQ]-[LV]-G-x-[LPV]-x-[DEK]-x(3)-[DENS]-x-[EGNT]-x-[DKR]-x-[GV]-x(2)-[DKR] C 3: 80.3399 6( 6) S-V-[AG]-[ACS]-G-x(1,3)-S-x(1,3)-A-[IV]-[ADST]-x(2)-G-x-[ALV]-[FY]-[AS]-W-G-x-[GN]-x-[NT]-x-[AQ]-x-G-x-[EG]-x(2)-[DE]-[DE]-x(2)-[EGS]-[APV] D 4: 79.9800 6( 6) G-x-D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E E 5: 77.6198 8( 6) S-x(0,1)-V-x(2)-G-[AES]-x(2)-[GS]-x-A-[IV]-[ADST]-x(2)-G-x-[ALV]-[FY]-[AS]-W-G-x-[GN]-x-[NT]-x-[AQ]-x-G-x-[EG]-x(2)-[DE]-[DE]-x(2)-[EGS]-[APV] F 6: 77.4188 6( 6) V-[DQ]-[AIL]-[AES]-[APV]-G-x(2)-H-x-[ALV]-x-L-x(2)-[DES]-G-x-[IV]-[FY]-[AST]-[FW]-G-x(0,1)-N-x(4,5)-L-G-R-x-[TV]-x(2)-[DEQR]-x-[DRS] G 7: 76.1371 7( 6) V-x(2,3)-A-x-G-x(1,2)-H-x-[ALV]-x-L-x(2)-[DES]-G-x-[ILV]-[FY]-[AST]-x-G-[CNV]-[GN]-[DEQ]-[DEQ]-x-[AQ]-L-G-R-x-[PTV]-x(2)-[DEQR]-x-[DRS] H 8: 75.8099 6( 6) D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E I 9: 72.0579 6( 6) L-x-[DEQT]-x(2)-V-x(3,5)-A-x(0,1)-G-[ADEG]-x-H-x-[ALV]-[AI]-L-x(2)-[AD]-G-[DKR]-[LV]-[FY]-x(2)-G-x(2)-[DER]-x(2)-[AENQ]-[GLV]-[GV]-x-[GLP]-x(2)-[DENR]-x(4)-[ENST] J 10: 70.4730 6( 6) D-x-V-x(3,5)-A-x(0,1)-G-[EG]-x-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G K 11: 66.8029 8( 6) V-x(3,4)-A-x(0,1)-G-[EG]-x-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G L 12: 66.4351 6( 6) A-x(0,1)-G-x-[DS]-H-x-[AILV]-x-L-[DT]-[DET]-[ADET]-G-x-V-[FY]-x(2)-G-[CNS]-x-[EQR]-[DQ]-x-[NQ]-[GL]-[GV]-x(4)-[ER] M 13: 66.3411 6( 6) G-[CV]-N-D-x(2)-A-L-G-R-x-T-x(2)-[ADEQ]-x-[DES]-[EQ]-x(2)-[DP]-x(3)-[DEN]-x(3)-[DEK]-[ADGV]-x(4)-[ALV]-[EGN]-[DEG]-x(2)-[ST] N 14: 62.5033 7( 6) A-[AGV]-G-x(1,2)-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G O 15: 58.9043 10( 6) A-x(1,3)-G-x(1,2)-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G P 16: 58.1072 10( 6) V-x(2,4)-A-x(0,1)-G-x(2)-H-x-[ALV]-x-L-x(2)-[ADES]-G-x-V-[FY]-[ASTV]-x-G-[CNSV]-x-[DEQR]-[DEQ]-x-[ANQ]-[GL]-[GV] Q 17: 55.6253 6( 6) L-x(2,3)-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E R 18: 49.7916 6( 6) H-x(0,1)-L-x(1,2)-L-x(2)-[ADE]-G-x-[LV]-x-[AT]-x-G-x-[ADG]-[DEQ]-[QR]-x-Q-L-G S 19: 47.6775 6( 6) G-x-[LV]-[FY]-[AST]-W-G-x-G-x-[NQ]-x-Q-L-G-x(4)-[DE]-[DR] T 20: 38.1450 6( 6) G-x-V-x-[ATV]-x-G-[NQ]-G-[DQ]-x(2)-Q-L-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 86.7473 6( 6) A-[PST]-G-x-D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E Occurences: 6(6) RCC_DROME : 184- 215: vccsi ASGaDHLViLTtAGkVFTvGCAEQgQLGRls-E rsisg RCC_HUMAN : 178- 209: pvvkv ASGnDHLVmLTaDGdLYTlGCGEQgQLGRvp-E lfanr RCC_MESAU : 178- 209: pvvkv ASGnDHLVmLTtDGdLYTlGCGEQgQLGRvp-E lfanr RCC_SCHPO : 232- 264: eicql ATGtDHIIaLTtTGkVYTwGNGQQfQLGRrmlE rrrlq RCC_XENLA : 184- 215: pviki ASGnDHLVlLTvDGdLYTsGCGEQgQLGRvp-E rftnr RCC_YEAST : 227- 259: nivql APGkDHILfLDeEGmVFAwGNGQQnQLGRkvmE rfrlk B 2: 82.9381 6( 6) V-x(3,4)-A-[ASV]-G-[AEGN]-x-H-x-[ALV]-x-L-x(2)-[AD]-G-[DKR]-[LV]-[FY]-[ST]-x-G-x(2)-[DE]-x(2)-[AEQ]-[LV]-G-x-[LPV]-x-[DEK]-x(3)-[DENS]-x-[EGNT]-x-[DKR]-x-[GV]-x(2)-[DKR] Occurences: 6(6) RCC_DROME : 179- 228: lmegt VccsiASGAdHlViLttAGKVFTvGcaEqgQLGrLsErsiSgEgRrGkrD llrpt RCC_HUMAN : 174- 222: qldvp Vvkv-ASGNdHlVmLtaDGDLYTlGcgEqgQLGrVpElfaNrGgRqGleR llvpk RCC_MESAU : 174- 222: qldmp Vvkv-ASGNdHlVmLttDGDLYTlGcgEqgQLGrVpElfaNrGgRqGleR llvpk RCC_SCHPO : 110- 158: tdkvg Vvdl-AVGGmHsAaLlhDGRVYTwGvnDdyALGrLtKdqkDeNgDkVdnD llegt RCC_XENLA : 180- 228: qintp Viki-ASGNdHlVlLtvDGDLYTsGcgEqgQLGrVpErftNrGgRkGleR llvpq RCC_YEAST : 331- 380: lpdnv VirsiAAGEhHsLiLsqDGDLYScGrlDmfEVGiPkDnlpEyTyKdVhgK aravp C 3: 80.3399 6( 6) S-V-[AG]-[ACS]-G-x(1,3)-S-x(1,3)-A-[IV]-[ADST]-x(2)-G-x-[ALV]-[FY]-[AS]-W-G-x-[GN]-x-[NT]-x-[AQ]-x-G-x-[EG]-x(2)-[DE]-[DE]-x(2)-[EGS]-[APV] Occurences: 6(6) RCC_DROME : 349- 388: tekiv SVGCGevcSy--AVTidGkLYSWGsGvNnQlGvGdgDDelEP ivvvs RCC_HUMAN : 349- 388: lpavs SVACGa--SvgyAVTkdGrVFAWGmGtNyQlGtGqdEDawSP vemmg RCC_MESAU : 349- 388: lpvvs SVACGa--SvgyAVSkdGrVFAWGmGtNyQlGtGqdEDawSP vemtg RCC_SCHPO : 283- 322: lknii SVGAGsyhSf--AIDnkGrVYAWGlNiTrQcGiEveDEeeGA vitkp RCC_XENLA : 354- 393: lpkin SVASGasvSy--AVStdGcVFAWGmGtNlQlGtGeeEDvwSP eqmtg RCC_XENLA : 354- 393: lpkin SVASGa--SvsyAVStdGcVFAWGmGtNlQlGtGeeEDvwSP eqmtg RCC_YEAST : 398- 437: vpkfk SVAAGshhSv--AVAqnGiAYSWGfGeTyAvGlGpfEDdtEV ptrik D 4: 79.9800 6( 6) G-x-D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E Occurences: 6(6) RCC_DROME : 186- 215: csias GaDHLViLTtAGkVFTvGCAEQgQLGRls-E rsisg RCC_HUMAN : 180- 209: vkvas GnDHLVmLTaDGdLYTlGCGEQgQLGRvp-E lfanr RCC_MESAU : 180- 209: vkvas GnDHLVmLTtDGdLYTlGCGEQgQLGRvp-E lfanr RCC_SCHPO : 234- 264: cqlat GtDHIIaLTtTGkVYTwGNGQQfQLGRrmlE rrrlq RCC_XENLA : 186- 215: ikias GnDHLVlLTvDGdLYTsGCGEQgQLGRvp-E rftnr RCC_YEAST : 229- 259: vqlap GkDHILfLDeEGmVFAwGNGQQnQLGRkvmE rfrlk E 5: 77.6198 8( 6) S-x(0,1)-V-x(2)-G-[AES]-x(2)-[GS]-x-A-[IV]-[ADST]-x(2)-G-x-[ALV]-[FY]-[AS]-W-G-x-[GN]-x-[NT]-x-[AQ]-x-G-x-[EG]-x(2)-[DE]-[DE]-x(2)-[EGS]-[APV] Occurences: 8(6) RCC_DROME : 349- 388: tekiv S-VgcGEvcSyAVTidGkLYSWGsGvNnQlGvGdgDDelEP ivvvs RCC_HUMAN : 348- 388: rlpav SsVacGAsvGyAVTkdGrVFAWGmGtNyQlGtGqdEDawSP vemmg RCC_HUMAN : 349- 388: lpavs S-VacGAsvGyAVTkdGrVFAWGmGtNyQlGtGqdEDawSP vemmg RCC_MESAU : 348- 388: rlpvv SsVacGAsvGyAVSkdGrVFAWGmGtNyQlGtGqdEDawSP vemtg RCC_MESAU : 349- 388: lpvvs S-VacGAsvGyAVSkdGrVFAWGmGtNyQlGtGqdEDawSP vemtg RCC_SCHPO : 283- 322: lknii S-VgaGSyhSfAIDnkGrVYAWGlNiTrQcGiEveDEeeGA vitkp RCC_XENLA : 354- 393: lpkin S-VasGAsvSyAVStdGcVFAWGmGtNlQlGtGeeEDvwSP eqmtg RCC_YEAST : 398- 437: vpkfk S-VaaGShhSvAVAqnGiAYSWGfGeTyAvGlGpfEDdtEV ptrik F 6: 77.4188 6( 6) V-[DQ]-[AIL]-[AES]-[APV]-G-x(2)-H-x-[ALV]-x-L-x(2)-[DES]-G-x-[IV]-[FY]-[AST]-[FW]-G-x(0,1)-N-x(4,5)-L-G-R-x-[TV]-x(2)-[DEQR]-x-[DRS] Occurences: 6(6) RCC_DROME : 77- 115: gipda VDISAGgmHnLvLtkSGdIYSFGcNdega-LGRdTseDgS eskpd RCC_HUMAN : 70- 108: ipedv VQAEAGgmHtVcLskSGqVYSFGcNdega-LGRdTsvEgS emvpg RCC_MESAU : 70- 108: llqdv VQAEAGgmHtVcLnqSGqVYSFGcNdega-LGRdTsvEgS emvpg RCC_SCHPO : 111- 149: dkvgv VDLAVGgmHsAaLlhDGrVYTWGvNddya-LGRlTkdQkD engdk RCC_XENLA : 76- 114: ltedi VQAAAGgmHtVcLgaSGsIYTFGcNdega-LGRdTseEgS emqpg RCC_YEAST : 224- 262: skyni VQLAPGkdHiLfLdeEGmVFAWG-NgqqnqLGRkVmeRfR lktld G 7: 76.1371 7( 6) V-x(2,3)-A-x-G-x(1,2)-H-x-[ALV]-x-L-x(2)-[DES]-G-x-[ILV]-[FY]-[AST]-x-G-[CNV]-[GN]-[DEQ]-[DEQ]-x-[AQ]-L-G-R-x-[PTV]-x(2)-[DEQR]-x-[DRS] Occurences: 7(6) RCC_DROME : 77- 115: gipda VdisAgGm-HnLvLtkSGdIYSfGCNDEgALGRdTseDgS eskpd RCC_HUMAN : 70- 108: ipedv VqaeAgGm-HtVcLskSGqVYSfGCNDEgALGRdTsvEgS emvpg RCC_MESAU : 70- 108: llqdv VqaeAgGm-HtVcLnqSGqVYSfGCNDEgALGRdTsvEgS emvpg RCC_SCHPO : 110- 149: tdkvg VvdlAvGgmHsAaLlhDGrVYTwGVNDDyALGRlTkdQkD engdk RCC_SCHPO : 111- 149: dkvgv Vdl-AvGgmHsAaLlhDGrVYTwGVNDDyALGRlTkdQkD engdk RCC_XENLA : 76- 114: ltedi VqaaAgGm-HtVcLgaSGsIYTfGCNDEgALGRdTseEgS emqpg RCC_XENLA : 76- 114: ltedi Vqa-AaGgmHtVcLgaSGsIYTfGCNDEgALGRdTseEgS emqpg RCC_YEAST : 224- 262: skyni Vql-ApGkdHiLfLdeEGmVFAwGNGQQnQLGRkVmeRfR lktld H 8: 75.8099 6( 6) D-H-[IL]-[ILV]-x-L-[DT]-x-[ADET]-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E Occurences: 6(6) RCC_DROME : 188- 215: iasga DHLViLTtAGkVFTvGCAEQgQLGRls-E rsisg RCC_HUMAN : 182- 209: vasgn DHLVmLTaDGdLYTlGCGEQgQLGRvp-E lfanr RCC_MESAU : 182- 209: vasgn DHLVmLTtDGdLYTlGCGEQgQLGRvp-E lfanr RCC_SCHPO : 236- 264: latgt DHIIaLTtTGkVYTwGNGQQfQLGRrmlE rrrlq RCC_XENLA : 188- 215: iasgn DHLVlLTvDGdLYTsGCGEQgQLGRvp-E rftnr RCC_YEAST : 231- 259: lapgk DHILfLDeEGmVFAwGNGQQnQLGRkvmE rfrlk I 9: 72.0579 6( 6) L-x-[DEQT]-x(2)-V-x(3,5)-A-x(0,1)-G-[ADEG]-x-H-x-[ALV]-[AI]-L-x(2)-[AD]-G-[DKR]-[LV]-[FY]-x(2)-G-x(2)-[DER]-x(2)-[AENQ]-[GLV]-[GV]-x-[GLP]-x(2)-[DENR]-x(4)-[ENST] Occurences: 6(6) RCC_DROME : 174- 221: rtpid LmEgtVccsi-AsGAdHlVILttAGKVFtvGcaEqgQLGrLseRsisgE grrgk RCC_HUMAN : 117- 162: pgkve LqEkvVqvs--A-GDsHtAALtdDGRVFlwGsfRdnNGViGllEpmkkS mvpvq RCC_MESAU : 117- 162: pgkve LqEkvVqvs--A-GDsHtAALteDGRVFlwGsfRdnNGViGllEpmkkS mvpvq RCC_SCHPO : 103- 151: rlnpi LsTdkVgvvdlAvGGmHsAALlhDGRVYtwGvnDdyALGrLtkDqkdeN gdkvd RCC_XENLA : 123- 168: pgkve LaEkvVqvs--A-GDsHtAALteDGRVFvfGsfRdnNGViGllEpmkkS mvpvq RCC_YEAST : 326- 373: pkrla LpDnvVirsiaA-GEhHsLILsqDGDLYscGrlDmfEVGiPkdNlpeyT ykdvh RCC_YEAST : 326- 373: pkrla LpDnvVirsi-AaGEhHsLILsqDGDLYscGrlDmfEVGiPkdNlpeyT ykdvh J 10: 70.4730 6( 6) D-x-V-x(3,5)-A-x(0,1)-G-[EG]-x-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G Occurences: 6(6) RCC_DROME : 75- 107: vagip DaVdis--A-GGmHNLvLtkSGDIYSfGcnDegALG rdtse RCC_HUMAN : 68- 100: vsipe DvVqae--A-GGmHTVcLskSGQVYSfGcnDegALG rdtsv RCC_MESAU : 68- 100: vpllq DvVqae--A-GGmHTVcLnqSGQVYSfGcnDegALG rdtsv RCC_SCHPO : 106- 141: pilst DkVgvvdlAvGGmHSAaLlhDGRVYTwGvnDdyALG rltkd RCC_XENLA : 74- 106: vtlte DiVqaa--A-GGmHTVcLgaSGSIYTfGcnDegALG rdtse RCC_YEAST : 328- 363: rlalp DnVvirsiAaGEhHSLiLsqDGDLYScGrlDmfEVG ipkdn K 11: 66.8029 8( 6) V-x(3,4)-A-x(0,1)-G-[EG]-x-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G Occurences: 8(6) RCC_DROME : 77- 107: gipda Vdis-A-GGmHNLvLtkSGDIYSfGcnDegALG rdtse RCC_HUMAN : 69- 100: siped VvqaeA-GGmHTVcLskSGQVYSfGcnDegALG rdtsv RCC_HUMAN : 70- 100: ipedv Vqae-A-GGmHTVcLskSGQVYSfGcnDegALG rdtsv RCC_MESAU : 69- 100: pllqd VvqaeA-GGmHTVcLnqSGQVYSfGcnDegALG rdtsv RCC_MESAU : 70- 100: llqdv Vqae-A-GGmHTVcLnqSGQVYSfGcnDegALG rdtsv RCC_SCHPO : 110- 141: tdkvg Vvdl-AvGGmHSAaLlhDGRVYTwGvnDdyALG rltkd RCC_XENLA : 76- 106: ltedi Vqaa-A-GGmHTVcLgaSGSIYTfGcnDegALG rdtse RCC_YEAST : 331- 363: lpdnv VirsiAaGEhHSLiLsqDGDLYScGrlDmfEVG ipkdn L 12: 66.4351 6( 6) A-x(0,1)-G-x-[DS]-H-x-[AILV]-x-L-[DT]-[DET]-[ADET]-G-x-V-[FY]-x(2)-G-[CNS]-x-[EQR]-[DQ]-x-[NQ]-[GL]-[GV]-x(4)-[ER] Occurences: 6(6) RCC_DROME : 184- 216: vccsi AsGaDHlViLTTAGkVFtvGCaEQgQLGrlseR sisge RCC_HUMAN : 126- 157: vvqvs A-GdSHtAaLTDDGrVFlwGSfRDnNGVigllE pmkks RCC_MESAU : 126- 157: vvqvs A-GdSHtAaLTEDGrVFlwGSfRDnNGVigllE pmkks RCC_SCHPO : 232- 264: eicql AtGtDHiIaLTTTGkVYtwGNgQQfQLGrrmlE rrrlq RCC_XENLA : 132- 163: vvqvs A-GdSHtAaLTEDGrVFvfGSfRDnNGVigllE pmkks RCC_YEAST : 227- 259: nivql ApGkDHiLfLDEEGmVFawGNgQQnQLGrkvmE rfrlk M 13: 66.3411 6( 6) G-[CV]-N-D-x(2)-A-L-G-R-x-T-x(2)-[ADEQ]-x-[DES]-[EQ]-x(2)-[DP]-x(3)-[DEN]-x(3)-[DEK]-[ADGV]-x(4)-[ALV]-[EGN]-[DEG]-x(2)-[ST] Occurences: 6(6) RCC_DROME : 99- 138: diysf GCNDegALGRdTseDgSEskPdliDlpgKAlcisAGDshS aclle RCC_HUMAN : 92- 131: qvysf GCNDegALGRdTsvEgSEmvPgkvElqeKVvqvsAGDshT aaltd RCC_MESAU : 92- 131: qvysf GCNDegALGRdTsvEgSEmvPgkvElqeKVvqvsAGDshT aalte RCC_SCHPO : 133- 172: rvytw GVNDdyALGRlTkdQkDEngDkvdNdllEGtpskVEGalS hlrvt RCC_XENLA : 98- 137: siytf GCNDegALGRdTseEgSEmqPgkvElaeKVvqvsAGDshT aalte RCC_YEAST : 109- 148: nvwsw GCNDvgALGRdTsnAkEQlkDmdaDdssDDedgdLNEleS tpaki N 14: 62.5033 7( 6) A-[AGV]-G-x(1,2)-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G Occurences: 7(6) RCC_DROME : 81- 107: avdis AGGm-HNLvLtkSGDIYSfGcnDegALG rdtse RCC_HUMAN : 74- 100: vvqae AGGm-HTVcLskSGQVYSfGcnDegALG rdtsv RCC_MESAU : 74- 100: vvqae AGGm-HTVcLnqSGQVYSfGcnDegALG rdtsv RCC_SCHPO : 114- 141: gvvdl AVGgmHSAaLlhDGRVYTwGvnDdyALG rltkd RCC_XENLA : 79- 106: divqa AAGgmHTVcLgaSGSIYTfGcnDegALG rdtse RCC_XENLA : 80- 106: ivqaa AGGm-HTVcLgaSGSIYTfGcnDegALG rdtse RCC_YEAST : 336- 363: virsi AAGehHSLiLsqDGDLYScGrlDmfEVG ipkdn O 15: 58.9043 10( 6) A-x(1,3)-G-x(1,2)-H-[NST]-[ALV]-x-L-x(2)-[DS]-G-[DQRS]-[ILV]-Y-[ST]-x-G-x(2)-D-x(2)-[AE]-[LV]-G Occurences: 10(6) RCC_DROME : 81- 107: avdis Ag--Gm-HNLvLtkSGDIYSfGcnDegALG rdtse RCC_HUMAN : 72- 100: edvvq AeagGm-HTVcLskSGQVYSfGcnDegALG rdtsv RCC_HUMAN : 72- 100: edvvq Aea-GgmHTVcLskSGQVYSfGcnDegALG rdtsv RCC_HUMAN : 74- 100: vvqae Ag--Gm-HTVcLskSGQVYSfGcnDegALG rdtsv RCC_MESAU : 72- 100: qdvvq AeagGm-HTVcLnqSGQVYSfGcnDegALG rdtsv RCC_MESAU : 72- 100: qdvvq Aea-GgmHTVcLnqSGQVYSfGcnDegALG rdtsv RCC_MESAU : 74- 100: vvqae Ag--Gm-HTVcLnqSGQVYSfGcnDegALG rdtsv RCC_SCHPO : 114- 141: gvvdl Avg-Gm-HSAaLlhDGRVYTwGvnDdyALG rltkd RCC_SCHPO : 114- 141: gvvdl Av--GgmHSAaLlhDGRVYTwGvnDdyALG rltkd RCC_XENLA : 78- 106: edivq AaagGm-HTVcLgaSGSIYTfGcnDegALG rdtse RCC_XENLA : 78- 106: edivq Aaa-GgmHTVcLgaSGSIYTfGcnDegALG rdtse RCC_XENLA : 79- 106: divqa Aag-Gm-HTVcLgaSGSIYTfGcnDegALG rdtse RCC_XENLA : 79- 106: divqa Aa--GgmHTVcLgaSGSIYTfGcnDegALG rdtse RCC_XENLA : 80- 106: ivqaa Ag--Gm-HTVcLgaSGSIYTfGcnDegALG rdtse RCC_YEAST : 336- 363: virsi Aa--GehHSLiLsqDGDLYScGrlDmfEVG ipkdn P 16: 58.1072 10( 6) V-x(2,4)-A-x(0,1)-G-x(2)-H-x-[ALV]-x-L-x(2)-[ADES]-G-x-V-[FY]-[ASTV]-x-G-[CNSV]-x-[DEQR]-[DEQ]-x-[ANQ]-[GL]-[GV] Occurences: 10(6) RCC_DROME : 179- 211: lmegt VccsiAsGadHlViLttAGkVFTvGCaEQgQLG rlser RCC_HUMAN : 69- 100: siped VvqaeA-GgmHtVcLskSGqVYSfGCnDEgALG rdtsv RCC_HUMAN : 70- 100: ipedv Vqae-A-GgmHtVcLskSGqVYSfGCnDEgALG rdtsv RCC_MESAU : 69- 100: pllqd VvqaeA-GgmHtVcLnqSGqVYSfGCnDEgALG rdtsv RCC_MESAU : 70- 100: llqdv Vqae-A-GgmHtVcLnqSGqVYSfGCnDEgALG rdtsv RCC_SCHPO : 110- 141: tdkvg Vvdl-AvGgmHsAaLlhDGrVYTwGVnDDyALG rltkd RCC_SCHPO : 111- 141: dkvgv Vdl--AvGgmHsAaLlhDGrVYTwGVnDDyALG rltkd RCC_XENLA : 127- 158: elaek VvqvsA-GdsHtAaLteDGrVFVfGSfRDnNGV iglle RCC_XENLA : 128- 158: laekv Vqvs-A-GdsHtAaLteDGrVFVfGSfRDnNGV iglle RCC_YEAST : 224- 254: skyni Vql--ApGkdHiLfLdeEGmVFAwGNgQQnQLG rkvme Q 17: 55.6253 6( 6) L-x(2,3)-G-x-[LV]-[FY]-[AT]-x-G-[CN]-[AG]-[EQ]-Q-x-Q-L-G-R-x(2,3)-E Occurences: 6(6) RCC_DROME : 193- 215: dhlvi LttaGkVFTvGCAEQgQLGRls-E rsisg RCC_HUMAN : 187- 209: dhlvm LtadGdLYTlGCGEQgQLGRvp-E lfanr RCC_MESAU : 187- 209: dhlvm LttdGdLYTlGCGEQgQLGRvp-E lfanr RCC_SCHPO : 241- 264: dhiia LtttGkVYTwGNGQQfQLGRrmlE rrrlq RCC_XENLA : 193- 215: dhlvl LtvdGdLYTsGCGEQgQLGRvp-E rftnr RCC_YEAST : 236- 259: dhilf LdeeGmVFAwGNGQQnQLGRkvmE rfrlk R 18: 49.7916 6( 6) H-x(0,1)-L-x(1,2)-L-x(2)-[ADE]-G-x-[LV]-x-[AT]-x-G-x-[ADG]-[DEQ]-[QR]-x-Q-L-G Occurences: 6(6) RCC_DROME : 189- 211: asgad H-LviLttAGkVfTvGcAEQgQLG rlser RCC_HUMAN : 183- 205: asgnd H-LvmLtaDGdLyTlGcGEQgQLG rvpel RCC_MESAU : 183- 205: asgnd H-LvmLttDGdLyTlGcGEQgQLG rvpel RCC_SCHPO : 347- 369: tggeh HtLa-LleDGrVlAwGrDDRhQLG ipdna RCC_XENLA : 189- 211: asgnd H-LvlLtvDGdLyTsGcGEQgQLG rvper RCC_YEAST : 232- 254: apgkd HiLf-LdeEGmVfAwGnGQQnQLG rkvme S 19: 47.6775 6( 6) G-x-[LV]-[FY]-[AST]-W-G-x-G-x-[NQ]-x-Q-L-G-x(4)-[DE]-[DR] Occurences: 6(6) RCC_DROME : 364- 384: avtid GkLYSWGsGvNnQLGvgdgDD elepi RCC_HUMAN : 364- 384: avtkd GrVFAWGmGtNyQLGtgqdED awspv RCC_MESAU : 364- 384: avskd GrVFAWGmGtNyQLGtgqdED awspv RCC_SCHPO : 245- 265: alttt GkVYTWGnGqQfQLGrrmlER rrlqg RCC_XENLA : 369- 389: avstd GcVFAWGmGtNlQLGtgeeED vwspe RCC_YEAST : 240- 260: fldee GmVFAWGnGqQnQLGrkvmER frlkt T 20: 38.1450 6( 6) G-x-V-x-[ATV]-x-G-[NQ]-G-[DQ]-x(2)-Q-L-G Occurences: 6(6) RCC_DROME : 42- 56: rrtvl GnVlVcGNGDvgQLG lgedi RCC_HUMAN : 35- 49: hstep GlVlTlGQGDvgQLG lgenv RCC_MESAU : 35- 49: hktep GlVlTlGQGDvgQLG lgesv RCC_SCHPO : 245- 259: alttt GkVyTwGNGQqfQLG rrmle RCC_XENLA : 41- 55: hgtvg GqVlTlGQGDvgQLG lgedi RCC_YEAST : 240- 254: fldee GmVfAwGNGQqnQLG rkvme Number of patterns evaluated by Pratt:22202 Total running time: 11 seconds