------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file RADICAL_ACTIVATING PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RADICAL_ACTIVATING.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NRDG_BPT4 156 NRDG_ECOLI 154 NRDG_HAEIN 155 PFLA_ECOLI 245 PFLA_HAEIN 245 PFLC_ECOLI 292 Y520_HAEIN 262 YJJW_ECOLI 287 Pratt run started at Thu Feb 6 20:57:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.5305 8( 8) G-x-G-x-R-x(3)-F-x(2)-G-C-x(3)-C-x(2)-C-x-N 2: 33.3604 8( 8) G-x-R-x(3)-F-x(2)-G-C-x(3)-C-x(2)-C-x-N 3: 29.1904 8( 8) R-x(3)-F-x(2)-G-C-x(3)-C-x(2)-C-x-N 4: 25.0203 8( 8) F-x(2)-G-C-x(3)-C-x(2)-C-x-N 5: 20.8503 8( 8) G-C-x(3)-C-x(2)-C-x-N 6: 16.6802 8( 8) C-x(3)-C-x(2)-C-x-N 7: 12.5102 8( 8) L-x(5)-L-x(3)-N 8: 12.5102 8( 8) G-x(4)-G-G 9: 12.5102 8( 8) C-x(2)-C-x-N 10: 11.5102 11( 8) G-x(0,1)-G-x(2,3)-L 11: 11.5102 9( 8) C-x(0,1)-L-x(4,5)-C 12: 11.5102 10( 8) V-x(1,2)-G-x(0,1)-G 13: 11.0102 10( 8) V-x(0,2)-D-x(0,1)-K 14: 11.0102 10( 8) L-x(1,3)-G-x(0,1)-K 15: 11.0102 12( 8) L-x(2,3)-V-x(1,3)-V 16: 11.0102 15( 8) L-x(1,2)-V-x(1,3)-V 17: 11.0102 10( 8) V-x(1,3)-L-x(1,2)-V 18: 11.0102 9( 8) L-x(2,3)-L-x(3,5)-Q 19: 11.0102 12( 8) G-x(2,4)-L-x(2,3)-N 20: 11.0102 12( 8) L-x(2,3)-V-x(2,4)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 45.6877 8( 8) G-[EPQ]-G-x-R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] B 2: 38.9216 8( 8) G-x-R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] C 3: 34.7515 8( 8) R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] D 4: 30.5815 8( 8) F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] E 5: 29.9113 8( 8) G-[ILV]-[ST]-[ALV]-[ST]-G-G-[DE]-[APV] F 6: 24.0257 8( 8) G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] G 7: 19.8556 8( 8) C-x(3)-C-x(2)-C-x-N-x(2)-[ST] H 8: 15.6856 8( 8) C-x(2)-C-x-N-x(2)-[ST] I 9: 15.0954 8( 8) L-x(2)-[AGL]-x(2)-L-x(3)-N J 10: 13.2508 9( 8) V-x(0,2)-D-x(0,1)-K-x(3)-[ADEN] K 11: 11.5102 11( 8) G-x(0,1)-G-x(2,3)-L L 12: 11.5102 9( 8) C-x(0,1)-L-x(4,5)-C M 13: 11.5102 10( 8) V-x(1,2)-G-x(0,1)-G N 14: 11.0102 10( 8) L-x(1,3)-G-x(0,1)-K O 15: 11.0102 12( 8) L-x(2,3)-V-x(1,3)-V P 16: 11.0102 15( 8) L-x(1,2)-V-x(1,3)-V Q 17: 11.0102 10( 8) V-x(1,3)-L-x(1,2)-V R 18: 11.0102 9( 8) L-x(2,3)-L-x(3,5)-Q S 19: 11.0102 12( 8) G-x(2,4)-L-x(2,3)-N T 20: 11.0102 12( 8) L-x(2,3)-V-x(2,4)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 45.6877 8( 8) G-[EPQ]-G-x-R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 14- 38: cdfvn GPGcRvvlFVtGClhkCegCyNrsT wnarn NRDG_ECOLI : 14- 38: vdivn GPGtRctlFVsGCvheCpgCyNksT wrvns NRDG_HAEIN : 14- 38: tdvin GEGtRctlFVsGCthaCkgCyNqkS wsfsa PFLA_ECOLI : 17- 41: cgtvd GPGiRfitFFqGClmrClyChNrdT wdthg PFLA_HAEIN : 17- 41: cgtvd GPGiRfilFMqGClmrCkyChNrdT wdleg PFLC_ECOLI : 35- 59: yslnd GEGiRtvvFFkGCphlCpwCaNpeS isgki Y520_HAEIN : 22- 46: fsnve GQGnRssiFLqGCklnClyChNpeT ipryt YJJW_ECOLI : 19- 43: fscvd GPGsRlalFLqGCnlrCknChNpwT mgrcn B 2: 38.9216 8( 8) G-x-R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 16- 38: fvngp GcRvvlFVtGClhkCegCyNrsT wnarn NRDG_ECOLI : 16- 38: ivngp GtRctlFVsGCvheCpgCyNksT wrvns NRDG_HAEIN : 16- 38: vinge GtRctlFVsGCthaCkgCyNqkS wsfsa PFLA_ECOLI : 19- 41: tvdgp GiRfitFFqGClmrClyChNrdT wdthg PFLA_HAEIN : 19- 41: tvdgp GiRfilFMqGClmrCkyChNrdT wdleg PFLC_ECOLI : 37- 59: lndge GiRtvvFFkGCphlCpwCaNpeS isgki Y520_HAEIN : 24- 46: nvegq GnRssiFLqGCklnClyChNpeT ipryt YJJW_ECOLI : 21- 43: cvdgp GsRlalFLqGCnlrCknChNpwT mgrcn C 3: 34.7515 8( 8) R-x(3)-F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 18- 38: ngpgc RvvlFVtGClhkCegCyNrsT wnarn NRDG_ECOLI : 18- 38: ngpgt RctlFVsGCvheCpgCyNksT wrvns NRDG_HAEIN : 18- 38: ngegt RctlFVsGCthaCkgCyNqkS wsfsa PFLA_ECOLI : 21- 41: dgpgi RfitFFqGClmrClyChNrdT wdthg PFLA_HAEIN : 21- 41: dgpgi RfilFMqGClmrCkyChNrdT wdleg PFLC_ECOLI : 39- 59: dgegi RtvvFFkGCphlCpwCaNpeS isgki Y520_HAEIN : 26- 46: egqgn RssiFLqGCklnClyChNpeT ipryt YJJW_ECOLI : 23- 43: dgpgs RlalFLqGCnlrCknChNpwT mgrcn D 4: 30.5815 8( 8) F-[FLMV]-x-G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 22- 38: crvvl FVtGClhkCegCyNrsT wnarn NRDG_ECOLI : 22- 38: trctl FVsGCvheCpgCyNksT wrvns NRDG_HAEIN : 22- 38: trctl FVsGCthaCkgCyNqkS wsfsa PFLA_ECOLI : 25- 41: irfit FFqGClmrClyChNrdT wdthg PFLA_HAEIN : 25- 41: irfil FMqGClmrCkyChNrdT wdleg PFLC_ECOLI : 43- 59: irtvv FFkGCphlCpwCaNpeS isgki Y520_HAEIN : 30- 46: nrssi FLqGCklnClyChNpeT ipryt YJJW_ECOLI : 27- 43: srlal FLqGCnlrCknChNpwT mgrcn E 5: 29.9113 8( 8) G-[ILV]-[ST]-[ALV]-[ST]-G-G-[DE]-[APV] Occurences: 8(8) NRDG_BPT4 : 66- 74: ksyiq GLTLTGGDP lypqn NRDG_ECOLI : 68- 76: rikrq GISLSGGDP lhpqn NRDG_HAEIN : 68- 76: rikrq GLTLSGGDP lhpln PFLA_ECOLI : 72- 80: nasgg GVTASGGEA ilqae PFLA_HAEIN : 72- 80: natgg GVTASGGEA vlqae PFLC_ECOLI : 120- 128: rtsgg GVTLSGGEV lmqae Y520_HAEIN : 75- 83: vpfir GVTVSGGEP tihhk YJJW_ECOLI : 115- 123: vlfie GITVSGGEA ttqlp F 6: 24.0257 8( 8) G-C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 25- 38: vlfvt GClhkCegCyNrsT wnarn NRDG_ECOLI : 25- 38: tlfvs GCvheCpgCyNksT wrvns NRDG_HAEIN : 25- 38: tlfvs GCthaCkgCyNqkS wsfsa PFLA_ECOLI : 28- 41: itffq GClmrClyChNrdT wdthg PFLA_HAEIN : 28- 41: ilfmq GClmrCkyChNrdT wdleg PFLC_ECOLI : 46- 59: vvffk GCphlCpwCaNpeS isgki Y520_HAEIN : 33- 46: siflq GCklnClyChNpeT ipryt YJJW_ECOLI : 30- 43: alflq GCnlrCknChNpwT mgrcn G 7: 19.8556 8( 8) C-x(3)-C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 26- 38: lfvtg ClhkCegCyNrsT wnarn NRDG_ECOLI : 26- 38: lfvsg CvheCpgCyNksT wrvns NRDG_HAEIN : 26- 38: lfvsg CthaCkgCyNqkS wsfsa PFLA_ECOLI : 29- 41: tffqg ClmrClyChNrdT wdthg PFLA_HAEIN : 29- 41: lfmqg ClmrCkyChNrdT wdleg PFLC_ECOLI : 47- 59: vffkg CphlCpwCaNpeS isgki Y520_HAEIN : 34- 46: iflqg CklnClyChNpeT ipryt YJJW_ECOLI : 31- 43: lflqg CnlrCknChNpwT mgrcn H 8: 15.6856 8( 8) C-x(2)-C-x-N-x(2)-[ST] Occurences: 8(8) NRDG_BPT4 : 30- 38: gclhk CegCyNrsT wnarn NRDG_ECOLI : 30- 38: gcvhe CpgCyNksT wrvns NRDG_HAEIN : 30- 38: gctha CkgCyNqkS wsfsa PFLA_ECOLI : 33- 41: gclmr ClyChNrdT wdthg PFLA_HAEIN : 33- 41: gclmr CkyChNrdT wdleg PFLC_ECOLI : 51- 59: gcphl CpwCaNpeS isgki Y520_HAEIN : 38- 46: gckln ClyChNpeT ipryt YJJW_ECOLI : 35- 43: gcnlr CknChNpwT mgrcn I 9: 15.0954 8( 8) L-x(2)-[AGL]-x(2)-L-x(3)-N Occurences: 8(8) NRDG_BPT4 : 69- 79: iqglt LtgGdpLypqN reeis NRDG_ECOLI : 71- 81: rqgis LsgGdpLhpqN vpdil NRDG_HAEIN : 71- 81: rqglt LsgGdpLhplN vetll PFLA_ECOLI : 150- 160: snhrt LefAkyLankN vkvwi PFLA_HAEIN : 150- 160: pnkrt LefAkyLqkrN qhtwi PFLC_ECOLI : 215- 225: iprlp LipGftLsreN mqqal Y520_HAEIN : 172- 182: klern LqnLaaLlplN kveev YJJW_ECOLI : 143- 153: kndpq LrhLtcLvdsN gmlse J 10: 13.2508 9( 8) V-x(0,2)-D-x(0,1)-K-x(3)-[ADEN] Occurences: 9(8) NRDG_BPT4 : 121- 130: lkyvd ViiDgKyekN lptkk NRDG_ECOLI : 125- 134: vdlin VlvDgKfvqD lkdps NRDG_ECOLI : 127- 134: linvl V--DgKfvqD lkdps NRDG_HAEIN : 125- 134: lpyid VliDgKfiqE qadps PFLA_ECOLI : 126- 135: evtdl VmlDlKqmnD eihqn PFLA_HAEIN : 126- 135: dvtdl VllDlKelnD qvhqn PFLC_ECOLI : 172- 181: klcde VlfDlKimdA tqard Y520_HAEIN : 123- 130: cslid Vt-D-KflfD lkgeg YJJW_ECOLI : 65- 72: qalqi V--DgKvvwN avvce K 11: 11.5102 11( 8) G-x(0,1)-G-x(2,3)-L Occurences: 11(8) NRDG_BPT4 : 71- 75: gltlt G-Gdp-L ypqnr NRDG_ECOLI : 73- 77: gisls G-Gdp-L hpqnv NRDG_HAEIN : 73- 77: gltls G-Gdp-L hplnv PFLA_ECOLI : 77- 82: gvtas G-GeaiL qaefv PFLA_HAEIN : 77- 82: gvtas G-GeavL qaefv PFLC_ECOLI : 118- 123: ffrts GgGvt-L sggev PFLC_ECOLI : 118- 123: ffrts G-GgvtL sggev PFLC_ECOLI : 119- 123: frtsg G-Gvt-L sggev PFLC_ECOLI : 125- 129: gvtls G-Gev-L mqaef Y520_HAEIN : 133- 138: lfdlk GeGig-L qtlcf Y520_HAEIN : 135- 141: dlkge GiGlqtL cfdrk YJJW_ECOLI : 19- 24: fscvd GpGsr-L alflq L 12: 11.5102 9( 8) C-x(0,1)-L-x(4,5)-C Occurences: 9(8) NRDG_BPT4 : 26- 33: lfvtg C-LhkcegC ynrst NRDG_ECOLI : 19- 26: gpgtr CtLfvsg-C vhecp NRDG_HAEIN : 19- 26: gegtr CtLfvsg-C thack PFLA_ECOLI : 29- 36: tffqg C-LmrclyC hnrdt PFLA_HAEIN : 29- 36: lfmqg C-LmrckyC hnrdt PFLC_ECOLI : 73- 79: rreak C-Lhcak-C lrdad PFLC_ECOLI : 79- 86: lhcak C-LrdadeC psgaf Y520_HAEIN : 34- 41: iflqg CkLncly-C hnpet YJJW_ECOLI : 31- 38: lflqg CnLrckn-C hnpwt M 13: 11.5102 10( 8) V-x(1,2)-G-x(0,1)-G Occurences: 10(8) NRDG_BPT4 : 12- 16: ypcdf Vn-GpG crvvl NRDG_ECOLI : 12- 16: ypvdi Vn-GpG trctl NRDG_HAEIN : 11- 16: yyptd VinGeG trctl PFLA_ECOLI : 15- 19: escgt Vd-GpG irfit PFLA_HAEIN : 15- 19: escgt Vd-GpG irfil PFLC_ECOLI : 288- 292: raglq VtvG-G Y520_HAEIN : 20- 24: ipfsn Ve-GqG nrssi Y520_HAEIN : 78- 81: irgvt Vs-G-G eptih YJJW_ECOLI : 17- 21: ipfsc Vd-GpG srlal YJJW_ECOLI : 118- 121: iegit Vs-G-G eattq N 14: 11.0102 10( 8) L-x(1,3)-G-x(0,1)-K Occurences: 10(8) NRDG_BPT4 : 101- 106: ekdiw Lwt-GyK fedik NRDG_ECOLI : 126- 130: dlinv Lvd-G-K fvqdl NRDG_HAEIN : 126- 130: pyidv Lid-G-K fiqeq PFLA_ECOLI : 218- 222: geeyk Ld--GvK ppkke PFLA_ECOLI : 236- 242: rvkgi LeqyGhK vmf PFLA_HAEIN : 44- 48: rdtwd Leg-G-K eisve PFLA_HAEIN : 44- 48: rdtwd Le--GgK eisve PFLC_ECOLI : 256- 259: epkyr Ll--G-K twsmk Y520_HAEIN : 31- 35: rssif Lq--GcK lncly Y520_HAEIN : 201- 204: fdaeh Lv--G-K vaqll YJJW_ECOLI : 201- 206: rsiyl LaerG-K laelr O 15: 11.0102 12( 8) L-x(2,3)-V-x(1,3)-V Occurences: 12(8) NRDG_BPT4 : 116- 121: kqlem Lky-Vd--V iidgk NRDG_ECOLI : 122- 127: mqvvd Lin-Vl--V dgkfv NRDG_HAEIN : 85- 92: lnvet LlpfVqr-V krecp NRDG_HAEIN : 86- 92: nvetl Lpf-Vqr-V krecp PFLA_ECOLI : 119- 126: pvide Lle-VtdlV mldlk PFLA_HAEIN : 119- 126: hiide Lld-VtdlV lldlk PFLC_ECOLI : 199- 207: rvlen LrllVsegV nvipr Y520_HAEIN : 62- 70: vslqy LyeqVmeaV pfirg Y520_HAEIN : 181- 187: aallp Lnk-Vee-V rlvfl YJJW_ECOLI : 62- 69: cphqa Lqi-VdgkV vwnav YJJW_ECOLI : 103- 110: svdev Lsh-VrkaV lfieg YJJW_ECOLI : 235- 240: afikg Lgd-Vp--V rlnaf P 16: 11.0102 15( 8) L-x(1,2)-V-x(1,3)-V Occurences: 15(8) NRDG_BPT4 : 116- 121: kqlem LkyVd--V iidgk NRDG_ECOLI : 21- 27: gtrct Lf-VsgcV hecpg NRDG_ECOLI : 122- 127: mqvvd LinVl--V dgkfv NRDG_HAEIN : 86- 92: nvetl LpfVqr-V krecp PFLA_ECOLI : 119- 126: pvide LleVtdlV mldlk PFLA_ECOLI : 120- 126: videl Le-VtdlV mldlk PFLA_HAEIN : 119- 126: hiide LldVtdlV lldlk PFLA_HAEIN : 120- 126: iidel Ld-VtdlV lldlk PFLC_ECOLI : 201- 207: lenlr Ll-VsegV nvipr PFLC_ECOLI : 286- 290: aerag Lq-Vt--V gg Y520_HAEIN : 181- 187: aallp LnkVee-V rlvfl YJJW_ECOLI : 62- 69: cphqa LqiVdgkV vwnav YJJW_ECOLI : 103- 110: svdev LshVrkaV lfieg YJJW_ECOLI : 235- 240: afikg LgdVp--V rlnaf YJJW_ECOLI : 272- 277: plada Lk-Vrg-V srlif Q 17: 11.0102 10( 8) V-x(1,3)-L-x(1,2)-V Occurences: 10(8) NRDG_BPT4 : 19- 23: gpgcr Vv--Lf-V tgclh NRDG_ECOLI : 82- 89: lhpqn VpdiLklV qrira NRDG_ECOLI : 119- 125: aaqmq Vvd-LinV lvdgk NRDG_ECOLI : 120- 125: aqmqv Vd--LinV lvdgk NRDG_HAEIN : 82- 89: lhpln VetlLpfV qrvkr PFLA_ECOLI : 115- 122: rrydp VideLleV tdlvm PFLA_HAEIN : 137- 144: elndq VhqnLigV pnkrt PFLC_ECOLI : 188- 195: qardv VkmnLprV lenlr Y520_HAEIN : 117- 123: fefdr Vcs-LidV tdkfl YJJW_ECOLI : 99- 106: aqsms VdevLshV rkavl R 18: 11.0102 9( 8) L-x(2,3)-L-x(3,5)-Q Occurences: 9(8) NRDG_BPT4 : 55- 65: ntvke LashLsksyiQ gltlt NRDG_ECOLI : 109- 116: wtgyk Lde-Lnaa--Q mqvvd NRDG_ECOLI : 109- 118: wtgyk Lde-LnaaqmQ vvdli NRDG_HAEIN : 109- 116: wtgyk Lde-Ldkq--Q ramlp PFLA_ECOLI : 125- 132: levtd Lvm-Ldlk--Q mndei PFLA_HAEIN : 127- 136: vtdlv Lld-LkelndQ vhqnl PFLA_HAEIN : 130- 139: lvlld Lke-LndqvhQ nligv PFLC_ECOLI : 233- 240: qaldv Lip-Lnir--Q ihllp Y520_HAEIN : 56- 65: tesak Lvs-LqylyeQ vmeav YJJW_ECOLI : 210- 218: gklae Lrl-Lvipg-Q vdylq S 19: 11.0102 12( 8) G-x(2,4)-L-x(2,3)-N Occurences: 12(8) NRDG_BPT4 : 71- 79: gltlt Ggdp-LypqN reeis NRDG_BPT4 : 72- 79: ltltg Gdp--LypqN reeis NRDG_ECOLI : 73- 81: gisls Ggdp-LhpqN vpdil NRDG_ECOLI : 74- 81: islsg Gdp--LhpqN vpdil NRDG_ECOLI : 106- 113: iwvwt Gyk--LdelN aaqmq NRDG_HAEIN : 73- 81: gltls Ggdp-LhplN vetll NRDG_HAEIN : 74- 81: ltlsg Gdp--LhplN vetll PFLA_ECOLI : 98- 106: ackke GihtcLdt-N gfvrr PFLA_HAEIN : 98- 106: ackee GintcLdt-N gfvrh PFLC_ECOLI : 218- 225: lplip Gft--LsreN mqqal Y520_HAEIN : 203- 211: aehlv GkvaqLlr-N ypdva YJJW_ECOLI : 30- 37: alflq Gcn--LrckN chnpw T 20: 11.0102 12( 8) L-x(2,3)-V-x(2,4)-R Occurences: 12(8) NRDG_BPT4 : 86- 93: eeisn LvswVka--R fpekd NRDG_ECOLI : 86- 93: nvpdi Lkl-Vqri-R aecpg NRDG_HAEIN : 85- 94: lnvet LlpfVqrvkR ecpdk NRDG_HAEIN : 86- 94: nvetl Lpf-VqrvkR ecpdk PFLA_ECOLI : 55- 63: vtved LmkeVvty-R hfmna PFLA_ECOLI : 141- 148: eihqn Lvg-Vsnh-R tlefa PFLA_HAEIN : 55- 63: isved LmkeVvty-R hfmna PFLA_HAEIN : 141- 148: qvhqn Lig-Vpnk-R tlefa PFLC_ECOLI : 192- 200: vvkmn Lpr-VlenlR llvse Y520_HAEIN : 181- 188: aallp Lnk-Veev-R lvflk Y520_HAEIN : 201- 210: fdaeh LvgkVaqllR nypdv YJJW_ECOLI : 235- 241: afikg Lgd-Vpv--R lnafh Number of patterns evaluated by Pratt:1077 Total running time: 1 seconds