------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file PYRIDINE_REDOX_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PYRIDINE_REDOX_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AHPF_ECOLI 162 AHPF_SALTY 521 DHNA_BACSP 519 DHNA_BACSU 373 R34K_CLOPA 308 TRXB_COXBU 321 TRXB_ECOLI 320 TRXB_HAEIN 318 TRXB_MYCLE 458 TRXB_PENCH 339 TRXB_STRCL 321 YHQ6_YEAST 342 YTR4_YEAST 59 Pratt run started at Thu Feb 6 20:56:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 25( 13) A-x(2)-A-x(3,4)-L 2: 12.0102 34( 13) G-x(3)-A-x(0,1)-G 3: 12.0102 28( 13) G-x(2,3)-A-G 4: 12.0102 17( 13) T-x(3,4)-G-x-F 5: 11.5102 45( 13) A-x(2,3)-A-x(3,4)-L 6: 11.5102 16( 13) T-x(0,1)-A-x(2,3)-G 7: 11.5102 14( 13) I-x(3)-G-x(0,2)-S 8: 11.5102 23( 13) F-x(0,1)-A-x(0,1)-G 9: 11.5102 22( 13) G-x(1,2)-F-x(0,1)-A 10: 11.5102 40( 13) G-x(2,3)-A-x(0,1)-G 11: 11.5102 16( 13) V-x(3,4)-A-x(2,3)-D 12: 11.5102 18( 13) T-x(3)-G-x(0,2)-F 13: 11.0102 23( 13) A-x(3,5)-L-x(2,3)-E 14: 11.0102 27( 13) L-x(1,3)-A-x(0,1)-E 15: 11.0102 34( 13) A-x(1,2)-L-x(1,3)-A 16: 11.0102 37( 13) G-x(2,3)-A-x(1,3)-L 17: 11.0102 24( 13) S-x(3,4)-A-x(1,3)-L 18: 11.0102 36( 13) G-x(0,2)-S-x(2,3)-A 19: 11.0102 42( 13) G-x(0,1)-G-x(3,5)-A 20: 11.0102 55( 13) G-x(1,3)-G-x(2,3)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 21.7049 17( 13) G-x(2,3)-A-x(0,1)-G-x(3)-[ADG]-x(4)-[QRS]-[AIL]-x(4)-[GILV] B 2: 16.8795 14( 13) T-[ANS]-x(2)-G-x(0,2)-F-x-[ACN] C 3: 16.3837 19( 13) G-x(1,2)-F-x(0,1)-A-[AGIV]-[DGS] D 4: 16.1473 24( 13) G-x(3)-A-x(0,1)-G-x(3)-[ADGN]-x(4)-[DEQRS] E 5: 15.9020 22( 13) G-x(0,1)-G-x(3,5)-A-x-[ADES]-x(4)-[AIL] F 6: 15.5274 20( 13) G-x(1,3)-G-x(2,3)-A-[AGILV]-[DES] G 7: 14.7291 15( 13) T-x(3,4)-G-x-F-x-[ACN] H 8: 14.6413 15( 13) A-x-[DGS]-A-x(3,4)-L I 9: 14.2292 25( 13) G-x(2,3)-A-G-x(3)-[ADGT] J 10: 13.5954 32( 13) G-x(0,2)-S-x(2,3)-A-x(3)-[AGL] K 11: 13.1539 21( 13) F-x(0,1)-A-x(0,1)-G-x(3)-[ADGNST] L 12: 12.8988 23( 13) G-x(2,3)-A-x(1,3)-L-[ADGTV] M 13: 11.5102 45( 13) A-x(2,3)-A-x(3,4)-L N 14: 11.5102 16( 13) T-x(0,1)-A-x(2,3)-G O 15: 11.5102 14( 13) I-x(3)-G-x(0,2)-S P 16: 11.5102 16( 13) V-x(3,4)-A-x(2,3)-D Q 17: 11.0102 23( 13) A-x(3,5)-L-x(2,3)-E R 18: 11.0102 27( 13) L-x(1,3)-A-x(0,1)-E S 19: 11.0102 34( 13) A-x(1,2)-L-x(1,3)-A T 20: 11.0102 24( 13) S-x(3,4)-A-x(1,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 21.7049 17( 13) G-x(2,3)-A-x(0,1)-G-x(3)-[ADG]-x(4)-[QRS]-[AIL]-x(4)-[GILV] Occurences: 17(13) AHPF_ECOLI : 75- 95: pgsnq GprfA-GsplGheftSLvlalL wtggh AHPF_SALTY : 75- 95: pgsqq GprfA-GsplGheftSLvlalL wtggh DHNA_BACSP : 74- 94: pgedt GivfA-GiplGheftSLvlalL qvsgr DHNA_BACSU : 337- 357: atsvp GlfaA-GdctDsaynQIiismG sgata DHNA_BACSU : 337- 357: atsvp Glf-AaGdctDsaynQIiismG sgata R34K_CLOPA : 13- 33: dlvii GagpA-GltaAiyaiRAklntL vlene TRXB_COXBU : 13- 33: sliil GsgpA-GytdAiyvaRAnlkpI mitgm TRXB_ECOLI : 12- 32: kllil GsgpA-GytaAvyaaRAnlqpV litgm TRXB_ECOLI : 280- 300: qtsip GvfaA-GdvmDhiyrQAitsaG tgcma TRXB_ECOLI : 280- 300: qtsip Gvf-AaGdvmDhiyrQAitsaG tgcma TRXB_HAEIN : 13- 33: kllil GsgpA-GytaAiyaaRAnlkpV lvtgl TRXB_HAEIN : 280- 300: atsve GvfaA-GdvmDhnyrQAitsaG tgcma TRXB_HAEIN : 280- 300: atsve Gvf-AaGdvmDhnyrQAitsaG tgcma TRXB_MYCLE : 18- 38: evivi GsgpA-GytaAlyaaRAqltpL vfegt TRXB_MYCLE : 279- 299: stsmd GvfaA-GdlvDrtyrQAitaaG sgcaa TRXB_MYCLE : 279- 299: stsmd Gvf-AaGdlvDrtyrQAitaaG sgcaa TRXB_PENCH : 254- 274: ftnve Gvf-AcGdvqDkryrQAitsaG mfilq TRXB_STRCL : 10- 30: nviii GsgpA-GytaAlytaRAslqpL vfega TRXB_STRCL : 272- 292: rtnlt GvfaA-GdvvDhtyrQAitaaG tgcsa TRXB_STRCL : 272- 292: rtnlt Gvf-AaGdvvDhtyrQAitaaG tgcsa YHQ6_YEAST : 305- 325: ltsvp GffaA-GdvqDsryrQAvtsaG sgcia YHQ6_YEAST : 305- 325: ltsvp Gff-AaGdvqDsryrQAvtsaG sgcia YTR4_YEAST : 22- 42: ltsvp GffaA-GdvqDskyrQAitsaG sgcma YTR4_YEAST : 22- 42: ltsvp Gff-AaGdvqDskyrQAitsaG sgcma B 2: 16.8795 14( 13) T-[ANS]-x(2)-G-x(0,2)-F-x-[ACN] Occurences: 14(13) AHPF_ECOLI : 152- 161: prikh TAidGgtFqN e AHPF_SALTY : 152- 161: prikh TAidGgtFqN eiter AHPF_SALTY : 478- 486: dakce TSvkGv-FaA gdctt DHNA_BACSP : 469- 477: dshga TNvpGv-FaA gdctn DHNA_BACSU : 333- 341: dkhga TSvpGl-FaA gdctd R34K_CLOPA : 268- 276: denme TNikGv-FaA gdvrs TRXB_COXBU : 278- 286: gnata TNipGv-FpA vvvrg TRXB_ECOLI : 276- 284: gnatq TSipGv-FaA gdvmd TRXB_HAEIN : 276- 284: gnata TSveGv-FaA gdvmd TRXB_MYCLE : 275- 283: grtts TSmdGv-FaA gdlvd TRXB_PENCH : 250- 258: pgtsf TNveGv-FaC gdvqd TRXB_STRCL : 268- 276: spstr TNltGv-FaA gdvvd YHQ6_YEAST : 301- 308: pgssl TSvpG--FfA agdvq YHQ6_YEAST : 301- 309: pgssl TSvpGf-FaA gdvqd YTR4_YEAST : 18- 25: pgssl TSvpG--FfA agdvq YTR4_YEAST : 18- 26: pgssl TSvpGf-FaA gdvqd C 3: 16.3837 19( 13) G-x(1,2)-F-x(0,1)-A-[AGIV]-[DGS] Occurences: 19(13) AHPF_ECOLI : 75- 81: pgsnq GprF-AGS plghe AHPF_SALTY : 75- 81: pgsqq GprF-AGS plghe AHPF_SALTY : 482- 487: etsvk Gv-F-AAG dcttv AHPF_SALTY : 482- 488: etsvk Gv-FaAGD cttvp DHNA_BACSP : 473- 478: atnvp Gv-F-AAG dctns DHNA_BACSP : 473- 479: atnvp Gv-FaAGD ctnsa DHNA_BACSU : 337- 342: atsvp Gl-F-AAG dctds DHNA_BACSU : 337- 343: atsvp Gl-FaAGD ctdsa R34K_CLOPA : 272- 277: etnik Gv-F-AAG dvrsk R34K_CLOPA : 272- 278: etnik Gv-FaAGD vrskl TRXB_COXBU : 239- 245: dltid Gl-FiAIG hdpnt TRXB_ECOLI : 238- 244: sldva Gl-FvAIG hspnt TRXB_ECOLI : 280- 285: qtsip Gv-F-AAG dvmdh TRXB_ECOLI : 280- 286: qtsip Gv-FaAGD vmdhi TRXB_HAEIN : 238- 244: elkld Gl-FvAIG hspnt TRXB_HAEIN : 280- 285: atsve Gv-F-AAG dvmdh TRXB_HAEIN : 280- 286: atsve Gv-FaAGD vmdhn TRXB_MYCLE : 240- 246: tlvvt Gv-FvAIG heprs TRXB_MYCLE : 279- 284: stsmd Gv-F-AAG dlvdr TRXB_MYCLE : 279- 285: stsmd Gv-FaAGD lvdrt TRXB_PENCH : 215- 221: vvean Gl-FyAVG hdpas TRXB_STRCL : 233- 239: elaat Gl-FiAVG hdprt TRXB_STRCL : 272- 277: rtnlt Gv-F-AAG dvvdh TRXB_STRCL : 272- 278: rtnlt Gv-FaAGD vvdht YHQ6_YEAST : 266- 272: dlevn Gl-FyAIG hspat YHQ6_YEAST : 305- 310: ltsvp Gf-F-AAG dvqds YHQ6_YEAST : 305- 311: ltsvp Gf-FaAGD vqdsr YTR4_YEAST : 22- 27: ltsvp Gf-F-AAG dvqds YTR4_YEAST : 22- 28: ltsvp Gf-FaAGD vqdsk D 4: 16.1473 24( 13) G-x(3)-A-x(0,1)-G-x(3)-[ADGN]-x(4)-[DEQRS] Occurences: 24(13) AHPF_ECOLI : 75- 89: pgsnq GprfA-GsplGheftS lvlal AHPF_SALTY : 75- 89: pgsqq GprfA-GsplGheftS lvlal AHPF_SALTY : 219- 233: dvliv GsgpA-GaaaAvysaR kgirt DHNA_BACSP : 74- 88: pgedt GivfA-GiplGheftS lvlal DHNA_BACSP : 215- 229: dvlvv GggpA-GassAiyaaR kgirt DHNA_BACSP : 473- 487: atnvp GvfaA-GdctNsaykQ iiism DHNA_BACSU : 79- 93: dvlvv GggpA-GasaAiydaR kgirt DHNA_BACSU : 337- 351: atsvp GlfaA-GdctDsaynQ iiism R34K_CLOPA : 13- 27: dlvii GagpA-GltaAiyaiR aklnt TRXB_COXBU : 13- 27: sliil GsgpA-GytdAiyvaR anlkp TRXB_ECOLI : 12- 26: kllil GsgpA-GytaAvyaaR anlqp TRXB_ECOLI : 238- 253: sldva GlfvAiGhspNtaifE gqlel TRXB_ECOLI : 280- 294: qtsip GvfaA-GdvmDhiyrQ aitsa TRXB_HAEIN : 13- 27: kllil GsgpA-GytaAiyaaR anlkp TRXB_HAEIN : 238- 253: elkld GlfvAiGhspNteifQ gqlel TRXB_HAEIN : 280- 294: atsve GvfaA-GdvmDhnyrQ aitsa TRXB_MYCLE : 18- 32: evivi GsgpA-GytaAlyaaR aqltp TRXB_MYCLE : 279- 293: stsmd GvfaA-GdlvDrtyrQ aitaa TRXB_PENCH : 221- 236: lfyav GhdpAsGlvkGqvelD degyi TRXB_STRCL : 10- 24: nviii GsgpA-GytaAlytaR aslqp TRXB_STRCL : 34- 49: plvfe GavtAgGalmNttdvE nfpgf TRXB_STRCL : 272- 286: rtnlt GvfaA-GdvvDhtyrQ aitaa YHQ6_YEAST : 305- 319: ltsvp GffaA-GdvqDsryrQ avtsa YTR4_YEAST : 22- 36: ltsvp GffaA-GdvqDskyrQ aitsa E 5: 15.9020 22( 13) G-x(0,1)-G-x(3,5)-A-x-[ADES]-x(4)-[AIL] Occurences: 22(13) AHPF_ECOLI : 98- 112: allwt G-GhpskeAqSlleqI rhidg AHPF_SALTY : 98- 112: allwt G-GhpskeAqSlleqI rdidg AHPF_SALTY : 219- 232: dvliv GsGpag--AaAavysA rkgir DHNA_BACSP : 215- 228: dvlvv GgGpag--AsSaiyaA rkgir DHNA_BACSP : 215- 228: dvlvv G-Ggpag-AsSaiyaA rkgir DHNA_BACSP : 216- 228: vlvvg G-Gpag--AsSaiyaA rkgir DHNA_BACSU : 79- 92: dvlvv GgGpag--AsAaiydA rkgir DHNA_BACSU : 79- 92: dvlvv G-Ggpag-AsAaiydA rkgir DHNA_BACSU : 80- 92: vlvvg G-Gpag--AsAaiydA rkgir R34K_CLOPA : 153- 165: dlvvv G-Ggns--AvEaaifL tkyar TRXB_COXBU : 302- 315: tiaaa GmGcmp--AlDaeryL dslnq TRXB_ECOLI : 152- 164: kvavi G-Ggnt--AvEealyL snias TRXB_ECOLI : 300- 313: aitsa GtGcma--AlDaeryL dglad TRXB_HAEIN : 153- 165: pvgvi G-Ggnt--AvEealyL anias TRXB_HAEIN : 300- 313: aitsa GtGcma--AlDaeryL daqea TRXB_MYCLE : 159- 171: diavi G-Ggds--AmEealfL trfar TRXB_MYCLE : 299- 312: aitaa GsGcaa--AiDaerwL aehag TRXB_PENCH : 130- 142: plyvi G-Ggds--AaEeamfL akygs TRXB_PENCH : 130- 143: plyvi GgGdsa--AeEamflA kygss TRXB_PENCH : 130- 143: plyvi G-Ggdsa-AeEamflA kygss TRXB_PENCH : 131- 143: lyvig G-Gdsa--AeEamflA kygss TRXB_STRCL : 152- 164: divvv G-Ggdt--AmEeatfL srfak TRXB_STRCL : 292- 305: aitaa GtGcsa--AlDaeryL aalad YHQ6_YEAST : 184- 196: plavi G-Ggds--AcEeaefL tkyas YHQ6_YEAST : 325- 338: avtsa GsGcia--AlDaeryL saqe YTR4_YEAST : 42- 55: aitsa GsGcma--AlDaekyL tsle F 6: 15.5274 20( 13) G-x(1,3)-G-x(2,3)-A-[AGILV]-[DES] Occurences: 20(13) AHPF_ECOLI : 71- 81: litnp GsnqGprfAGS plghe AHPF_SALTY : 71- 81: litnp GsqqGprfAGS plghe AHPF_SALTY : 363- 373: vavig GgnsGveaAID lagiv AHPF_SALTY : 364- 373: avigg Gns-GveaAID lagiv DHNA_BACSP : 355- 365: vavig GgnsGveaAID lagiv DHNA_BACSP : 356- 365: avigg Gns-GveaAID lagiv DHNA_BACSU : 219- 229: vavig GgnsGieaAID lagiv DHNA_BACSU : 220- 229: avigg Gns-GieaAID lagiv R34K_CLOPA : 153- 160: dlvvv Gg--Gns-AVE aaifl TRXB_COXBU : 302- 310: tiaaa Gm--GcmpALD aeryl TRXB_ECOLI : 152- 159: kvavi Gg--Gnt-AVE ealyl TRXB_ECOLI : 300- 308: aitsa Gt--GcmaALD aeryl TRXB_HAEIN : 150- 160: rnkpv GvigGgntAVE ealyl TRXB_HAEIN : 153- 160: pvgvi Gg--Gnt-AVE ealyl TRXB_HAEIN : 300- 308: aitsa Gt--GcmaALD aeryl TRXB_MYCLE : 299- 307: aitaa Gs--GcaaAID aerwl TRXB_PENCH : 130- 137: plyvi Gg--Gds-AAE eamfl TRXB_STRCL : 292- 300: aitaa Gt--GcsaALD aeryl YHQ6_YEAST : 325- 333: avtsa Gs--GciaALD aeryl YTR4_YEAST : 42- 50: aitsa Gs--GcmaALD aekyl G 7: 14.7291 15( 13) T-x(3,4)-G-x-F-x-[ACN] Occurences: 15(13) AHPF_ECOLI : 152- 161: prikh TaidgGtFqN e AHPF_SALTY : 152- 161: prikh TaidgGtFqN eiter AHPF_SALTY : 478- 486: dakce Tsvk-GvFaA gdctt DHNA_BACSP : 469- 477: dshga Tnvp-GvFaA gdctn DHNA_BACSU : 333- 341: dkhga Tsvp-GlFaA gdctd R34K_CLOPA : 268- 276: denme Tnik-GvFaA gdvrs TRXB_COXBU : 278- 286: gnata Tnip-GvFpA vvvrg TRXB_ECOLI : 276- 284: gnatq Tsip-GvFaA gdvmd TRXB_HAEIN : 276- 284: gnata Tsve-GvFaA gdvmd TRXB_MYCLE : 235- 244: tgeet TlvvtGvFvA ighep TRXB_MYCLE : 275- 283: grtts Tsmd-GvFaA gdlvd TRXB_PENCH : 250- 258: pgtsf Tnve-GvFaC gdvqd TRXB_STRCL : 268- 276: spstr Tnlt-GvFaA gdvvd YHQ6_YEAST : 301- 309: pgssl Tsvp-GfFaA gdvqd YTR4_YEAST : 18- 26: pgssl Tsvp-GfFaA gdvqd H 8: 14.6413 15( 13) A-x-[DGS]-A-x(3,4)-L Occurences: 15(13) AHPF_ECOLI : 31- 39: tldds AkSAeikeL laeia AHPF_SALTY : 31- 39: tldds AkSAeikeL laeia DHNA_BACSP : 499- 506: sgata AlGAfdy-L irntt DHNA_BACSU : 363- 370: sgata AlGAfdy-L irn R34K_CLOPA : 112- 120: kalii AtGAksrrL pipee TRXB_COXBU : 113- 121: dalii AtGAsaryL glpse TRXB_COXBU : 308- 315: mgcmp AlDAery-L dslnq TRXB_ECOLI : 111- 119: dalii AtGAsaryL glpse TRXB_ECOLI : 306- 313: tgcma AlDAery-L dglad TRXB_HAEIN : 306- 313: tgcma AlDAery-L daqea TRXB_MYCLE : 305- 312: sgcaa AiDAerw-L aehag TRXB_PENCH : 87- 95: davii AtGAnarrL nlpge TRXB_STRCL : 298- 305: tgcsa AlDAery-L aalad YHQ6_YEAST : 331- 338: sgcia AlDAery-L saqe YTR4_YEAST : 48- 55: sgcma AlDAeky-L tsle I 9: 14.2292 25( 13) G-x(2,3)-A-G-x(3)-[ADGT] Occurences: 25(13) AHPF_ECOLI : 75- 84: pgsnq GprfAGsplG hefts AHPF_SALTY : 75- 84: pgsqq GprfAGsplG hefts AHPF_SALTY : 219- 228: dvliv GsgpAGaaaA vysar AHPF_SALTY : 266- 275: vpkte GqklAGalkA hvsdy AHPF_SALTY : 482- 491: etsvk GvfaAGdctT vpykq DHNA_BACSP : 74- 83: pgedt GivfAGiplG hefts DHNA_BACSP : 215- 224: dvlvv GggpAGassA iyaar DHNA_BACSP : 216- 224: vlvvg Ggp-AGassA iyaar DHNA_BACSU : 79- 88: dvlvv GggpAGasaA iydar DHNA_BACSU : 80- 88: vlvvg Ggp-AGasaA iydar DHNA_BACSU : 337- 346: atsvp GlfaAGdctD saynq R34K_CLOPA : 13- 22: dlvii GagpAGltaA iyair TRXB_COXBU : 13- 22: sliil GsgpAGytdA iyvar TRXB_ECOLI : 12- 21: kllil GsgpAGytaA vyaar TRXB_ECOLI : 280- 289: qtsip GvfaAGdvmD hiyrq TRXB_HAEIN : 13- 22: kllil GsgpAGytaA iyaar TRXB_HAEIN : 280- 289: atsve GvfaAGdvmD hnyrq TRXB_MYCLE : 18- 27: evivi GsgpAGytaA lyaar TRXB_MYCLE : 279- 288: stsmd GvfaAGdlvD rtyrq TRXB_PENCH : 5- 13: mlan Gta-AGgqlT tttdv TRXB_STRCL : 10- 19: nviii GsgpAGytaA lytar TRXB_STRCL : 272- 281: rtnlt GvfaAGdvvD htyrq YHQ6_YEAST : 62- 70: gmman Gia-AGgqlT tttdi YHQ6_YEAST : 305- 314: ltsvp GffaAGdvqD sryrq YTR4_YEAST : 22- 31: ltsvp GffaAGdvqD skyrq J 10: 13.5954 32( 13) G-x(0,2)-S-x(2,3)-A-x(3)-[AGL] Occurences: 32(13) AHPF_ECOLI : 99- 109: llwtg GhpSke-AqslL eqirh AHPF_SALTY : 99- 109: llwtg GhpSke-AqslL eqird AHPF_SALTY : 219- 227: dvliv G--Sgp-AgaaA avysa AHPF_SALTY : 363- 374: vavig GgnSgveAaidL agive AHPF_SALTY : 364- 374: avigg Gn-SgveAaidL agive DHNA_BACSP : 195- 204: ilaql G--SgpdAselA dkdpf DHNA_BACSP : 220- 231: gggpa GasSaiyAarkG irtgi DHNA_BACSP : 355- 366: vavig GgnSgveAaidL agivn DHNA_BACSP : 356- 366: avigg Gn-SgveAaidL agivn DHNA_BACSP : 493- 502: iiism G--SgatAalgA fdyli DHNA_BACSU : 59- 68: ilakm G--SgtdAsefA dkepf DHNA_BACSU : 219- 230: vavig GgnSgieAaidL agivn DHNA_BACSU : 220- 230: avigg Gn-SgieAaidL agivn DHNA_BACSU : 357- 366: iiism G--SgatAalgA fdyli R34K_CLOPA : 154- 165: lvvvg GgnSaveAaifL tkyar R34K_CLOPA : 155- 165: vvvgg Gn-SaveAaifL tkyar TRXB_COXBU : 133- 142: pymgk Gv-Sac-AtcdG ffyra TRXB_ECOLI : 12- 20: kllil G--Sgp-AgytA avyaa TRXB_ECOLI : 131- 140: afkgr Gv-Sac-AtcdG ffyrn TRXB_ECOLI : 244- 254: lfvai Gh-SpntAifeG qlele TRXB_HAEIN : 13- 21: kllil G--Sgp-AgytA aiyaa TRXB_HAEIN : 132- 141: nykgr Gv-Sac-AtcdG ffyrn TRXB_MYCLE : 18- 26: evivi G--Sgp-AgytA alyaa TRXB_MYCLE : 138- 147: ellgr Gv-Sac-AtcdG sffrg TRXB_MYCLE : 299- 308: aitaa G--SgcaAaidA erwla TRXB_PENCH : 107- 116: tywqn Gi-Sac-AvcdG avpif TRXB_STRCL : 10- 18: nviii G--Sgp-AgytA alyta TRXB_STRCL : 131- 140: alsgr Gv-Swc-AtcdG fffkd YHQ6_YEAST : 33- 41: kvtii G--Sgp-AahtA aiyla YHQ6_YEAST : 33- 42: kvtii G--SgpaAhtaA iylar YHQ6_YEAST : 161- 170: tywqq Gi-Sac-AvcdG avpif YHQ6_YEAST : 325- 334: avtsa G--SgciAaldA eryls YTR4_YEAST : 42- 51: aitsa G--SgcmAaldA ekylt K 11: 13.1539 21( 13) F-x(0,1)-A-x(0,1)-G-x(3)-[ADGNST] Occurences: 21(13) AHPF_ECOLI : 78- 84: nqgpr F-A-GsplG hefts AHPF_SALTY : 78- 84: qqgpr F-A-GsplG hefts AHPF_SALTY : 484- 491: svkgv FaA-GdctT vpykq AHPF_SALTY : 484- 491: svkgv F-AaGdctT vpykq DHNA_BACSP : 77- 83: dtgiv F-A-GiplG hefts DHNA_BACSP : 475- 482: nvpgv FaA-GdctN saykq DHNA_BACSP : 475- 482: nvpgv F-AaGdctN saykq DHNA_BACSU : 339- 346: svpgl FaA-GdctD saynq DHNA_BACSU : 339- 346: svpgl F-AaGdctD saynq R34K_CLOPA : 274- 281: nikgv FaA-GdvrS klirq R34K_CLOPA : 274- 281: nikgv F-AaGdvrS klirq TRXB_COXBU : 241- 249: tidgl FiAiGhdpN tkifk TRXB_ECOLI : 240- 248: dvagl FvAiGhspN taife TRXB_ECOLI : 282- 289: sipgv FaA-GdvmD hiyrq TRXB_ECOLI : 282- 289: sipgv F-AaGdvmD hiyrq TRXB_HAEIN : 240- 248: kldgl FvAiGhspN teifq TRXB_HAEIN : 282- 289: svegv FaA-GdvmD hnyrq TRXB_HAEIN : 282- 289: svegv F-AaGdvmD hnyrq TRXB_MYCLE : 281- 288: smdgv FaA-GdlvD rtyrq TRXB_MYCLE : 281- 288: smdgv F-AaGdlvD rtyrq TRXB_PENCH : 217- 225: eangl FyAvGhdpA sglvk TRXB_PENCH : 256- 263: nvegv F-AcGdvqD kryrq TRXB_STRCL : 274- 281: nltgv FaA-GdvvD htyrq TRXB_STRCL : 274- 281: nltgv F-AaGdvvD htyrq YHQ6_YEAST : 268- 276: evngl FyAiGhspA tdivk YHQ6_YEAST : 306- 314: tsvpg FfAaGdvqD sryrq YHQ6_YEAST : 307- 314: svpgf FaA-GdvqD sryrq YHQ6_YEAST : 307- 314: svpgf F-AaGdvqD sryrq YTR4_YEAST : 23- 31: tsvpg FfAaGdvqD skyrq YTR4_YEAST : 24- 31: svpgf FaA-GdvqD skyrq YTR4_YEAST : 24- 31: svpgf F-AaGdvqD skyrq L 12: 12.8988 23( 13) G-x(2,3)-A-x(1,3)-L-[ADGTV] Occurences: 23(13) AHPF_ECOLI : 75- 84: pgsnq GprfAgspLG hefts AHPF_SALTY : 75- 84: pgsqq GprfAgspLG hefts AHPF_SALTY : 367- 375: gggns GveaAid-LA giveh AHPF_SALTY : 367- 375: gggns Gve-AaidLA giveh DHNA_BACSP : 74- 83: pgedt GivfAgipLG hefts DHNA_BACSP : 197- 204: aqlgs Gpd-Ase-LA dkdpf DHNA_BACSP : 359- 367: gggns GveaAid-LA givnh DHNA_BACSP : 359- 367: gggns Gve-AaidLA givnh DHNA_BACSP : 493- 501: iiism Gsg-AtaaLG afdyl DHNA_BACSP : 495- 501: ismgs Gat-Aa--LG afdyl DHNA_BACSU : 223- 231: gggns GieaAid-LA givnh DHNA_BACSU : 223- 231: gggns Gie-AaidLA givnh DHNA_BACSU : 357- 365: iiism Gsg-AtaaLG afdyl DHNA_BACSU : 359- 365: ismgs Gat-Aa--LG afdyl R34K_CLOPA : 13- 20: dlvii GagpAg--LT aaiya TRXB_COXBU : 115- 122: liiat Gas-Ary-LG lpsek TRXB_ECOLI : 113- 120: liiat Gas-Ary-LG lpsee TRXB_ECOLI : 302- 308: tsagt Gcm-Aa--LD aeryl TRXB_HAEIN : 302- 308: tsagt Gcm-Aa--LD aeryl TRXB_MYCLE : 279- 287: stsmd GvfaAgd-LV drtyr TRXB_MYCLE : 279- 287: stsmd Gvf-AagdLV drtyr TRXB_PENCH : 5- 13: mlan Gta-AggqLT tttdv TRXB_PENCH : 221- 229: lfyav GhdpAsg-LV kgqve TRXB_STRCL : 294- 300: taagt Gcs-Aa--LD aeryl YHQ6_YEAST : 62- 70: gmman Gia-AggqLT tttdi YHQ6_YEAST : 327- 333: tsags Gci-Aa--LD aeryl YTR4_YEAST : 44- 50: tsags Gcm-Aa--LD aekyl M 13: 11.5102 45( 13) A-x(2,3)-A-x(3,4)-L Occurences: 45(13) AHPF_ECOLI : 31- 39: tldds Aks-AeikeL laeia AHPF_SALTY : 31- 39: tldds Aks-AeikeL laeia AHPF_SALTY : 199- 207: kvdtg AekrAaea-L nkrda AHPF_SALTY : 507- 515: gegak AslsAfdy-L irtki DHNA_BACSP : 498- 506: gsgat AalgAfdy-L irntt DHNA_BACSP : 499- 506: sgata Alg-Afdy-L irntt DHNA_BACSU : 362- 370: gsgat AalgAfdy-L irn DHNA_BACSU : 363- 370: sgata Alg-Afdy-L irn R34K_CLOPA : 21- 30: paglt AaiyAirakL ntlvl R34K_CLOPA : 22- 30: aglta Aiy-AirakL ntlvl R34K_CLOPA : 25- 33: taaiy Air-AklntL vlene R34K_CLOPA : 112- 120: kalii Atg-AksrrL pipee R34K_CLOPA : 158- 165: gggns Ave-Aaif-L tkyar TRXB_COXBU : 22- 30: agytd AiyvAran-L kpimi TRXB_COXBU : 113- 121: dalii Atg-AsaryL glpse TRXB_COXBU : 308- 315: mgcmp Ald-Aery-L dslnq TRXB_ECOLI : 20- 29: pagyt AavyAaranL qpvli TRXB_ECOLI : 21- 29: agyta AvyaAran-L qpvli TRXB_ECOLI : 21- 29: agyta Avy-AaranL qpvli TRXB_ECOLI : 111- 119: dalii Atg-AsaryL glpse TRXB_ECOLI : 305- 313: gtgcm AaldAery-L dglad TRXB_ECOLI : 306- 313: tgcma Ald-Aery-L dglad TRXB_HAEIN : 21- 30: pagyt AaiyAaranL kpvlv TRXB_HAEIN : 22- 30: agyta AiyaAran-L kpvlv TRXB_HAEIN : 22- 30: agyta Aiy-AaranL kpvlv TRXB_HAEIN : 166- 174: ealyl Ani-AstvhL ihrrd TRXB_HAEIN : 305- 313: gtgcm AaldAery-L daqea TRXB_HAEIN : 306- 313: tgcma Ald-Aery-L daqea TRXB_MYCLE : 26- 35: pagyt AalyAaraqL tplvf TRXB_MYCLE : 27- 35: agyta AlyaAraq-L tplvf TRXB_MYCLE : 27- 35: agyta Aly-AaraqL tplvf TRXB_MYCLE : 30- 38: taaly Aar-AqltpL vfegt TRXB_MYCLE : 304- 312: gsgca AaidAerw-L aehag TRXB_MYCLE : 305- 312: sgcaa Aid-Aerw-L aehag TRXB_PENCH : 3- 12: ml AngtAaggqL ttttd TRXB_PENCH : 87- 95: davii Atg-AnarrL nlpge TRXB_PENCH : 269- 278: kryrq AitsAgmfiL qhlih TRXB_STRCL : 19- 27: agyta AlytAras-L qplvf TRXB_STRCL : 35- 42: lvfeg Avt-Agga-L mnttd TRXB_STRCL : 297- 305: gtgcs AaldAery-L aalad TRXB_STRCL : 298- 305: tgcsa Ald-Aery-L aalad YHQ6_YEAST : 37- 45: igsgp AahtAaiy-L araem YHQ6_YEAST : 38- 45: gsgpa Aht-Aaiy-L araem YHQ6_YEAST : 60- 69: yegmm AngiAaggqL ttttd YHQ6_YEAST : 330- 338: gsgci AaldAery-L saqe YHQ6_YEAST : 331- 338: sgcia Ald-Aery-L saqe YTR4_YEAST : 47- 55: gsgcm AaldAeky-L tsle YTR4_YEAST : 48- 55: sgcma Ald-Aeky-L tsle N 14: 11.5102 16( 13) T-x(0,1)-A-x(2,3)-G Occurences: 16(13) AHPF_ECOLI : 152- 156: prikh T-Aid-G gtfqn AHPF_ECOLI : 152- 157: prikh T-AidgG tfqne AHPF_SALTY : 152- 156: prikh T-Aid-G gtfqn AHPF_SALTY : 152- 157: prikh T-AidgG tfqne DHNA_BACSP : 497- 501: mgsga T-Aal-G afdyl DHNA_BACSU : 361- 365: mgsga T-Aal-G afdyl R34K_CLOPA : 288- 294: lirql TtAvsdG tvaal R34K_CLOPA : 289- 294: irqlt T-AvsdG tvaal TRXB_COXBU : 297- 302: qlyrq TiAaa-G mgcmp TRXB_ECOLI : 249- 254: ghspn T-AifeG qlele TRXB_ECOLI : 297- 302: yrqai TsAgt-G cmaal TRXB_HAEIN : 297- 302: yrqai TsAgt-G cmaal TRXB_MYCLE : 296- 301: yrqai TaAgs-G caaai TRXB_MYCLE : 296- 301: yrqai T-AagsG caaai TRXB_MYCLE : 343- 349: wstam TdAknaG vtiev TRXB_PENCH : 6- 10: mlang T-Aag-G qlttt TRXB_STRCL : 289- 294: yrqai TaAgt-G csaal TRXB_STRCL : 289- 294: yrqai T-AagtG csaal YHQ6_YEAST : 322- 327: yrqav TsAgs-G ciaal YTR4_YEAST : 39- 44: yrqai TsAgs-G cmaal O 15: 11.5102 14( 13) I-x(3)-G-x(0,2)-S Occurences: 14(13) AHPF_ECOLI : 67- 72: kpsfl ItnpG--S nqgpr AHPF_SALTY : 67- 72: kpsfl ItnpG--S qqgpr DHNA_BACSP : 489- 494: aykqi IismG--S gataa DHNA_BACSU : 353- 358: aynqi IismG--S gataa R34K_CLOPA : 110- 117: kvkal IiatGakS rrlpi TRXB_COXBU : 111- 117: scdal IiatGa-S arylg TRXB_ECOLI : 109- 115: tcdal IiatGa-S arylg TRXB_HAEIN : 110- 116: tcdal IiatGa-S aryig TRXB_MYCLE : 116- 122: qarav IlamGt-S vrylq TRXB_MYCLE : 295- 300: tyrqa ItaaG--S gcaaa TRXB_PENCH : 242- 248: degyi ItkpGt-S ftnve TRXB_STRCL : 109- 114: rakav IvttG--S qhrkl YHQ6_YEAST : 139- 145: ttdai IlatGa-S akrmh YTR4_YEAST : 38- 43: kyrqa ItsaG--S gcmaa P 16: 11.5102 16( 13) V-x(3,4)-A-x(2,3)-D Occurences: 16(13) AHPF_ECOLI : 21- 28: kltkp Veli-Atl-D dsaks AHPF_ECOLI : 21- 29: kltkp Veli-AtldD saksa AHPF_SALTY : 21- 28: kltkp Veli-Atl-D dsaks AHPF_SALTY : 21- 29: kltkp Veli-AtldD saksa AHPF_SALTY : 480- 488: kcets VkgvfAag-D cttvp DHNA_BACSP : 471- 479: hgatn VpgvfAag-D ctnsa DHNA_BACSU : 335- 343: hgats VpglfAag-D ctdsa R34K_CLOPA : 58- 66: fpgfn Visg-AdlaD kmeeh TRXB_COXBU : 134- 141: ymgkg Vsac-Atc-D gffyr TRXB_ECOLI : 132- 139: fkgrg Vsac-Atc-D gffyr TRXB_HAEIN : 133- 140: ykgrg Vsac-Atc-D gffyr TRXB_HAEIN : 278- 286: atats VegvfAag-D vmdhn TRXB_MYCLE : 139- 146: llgrg Vsac-Atc-D gsffr TRXB_PENCH : 252- 260: tsftn VegvfAcg-D vqdkr TRXB_STRCL : 132- 139: lsgrg Vswc-Atc-D gfffk YHQ6_YEAST : 235- 242: vlfnt Vale-Akg-D gklln YHQ6_YEAST : 303- 311: sslts VpgffAag-D vqdsr YTR4_YEAST : 20- 28: sslts VpgffAag-D vqdsk Q 17: 11.0102 23( 13) A-x(3,5)-L-x(2,3)-E Occurences: 23(13) AHPF_ECOLI : 34- 42: dsaks Aeike-Lla-E iaels AHPF_ECOLI : 79- 86: qgprf Agsp--Lgh-E ftslv AHPF_SALTY : 34- 42: dsaks Aeike-Lla-E iaels AHPF_SALTY : 79- 86: qgprf Agsp--Lgh-E ftslv AHPF_SALTY : 296- 306: sklvp AateggLhqiE tasga AHPF_SALTY : 297- 306: klvpa Ategg-LhqiE tasga DHNA_BACSP : 78- 85: tgivf Agip--Lgh-E ftslv DHNA_BACSP : 169- 178: skdim AvptvyLng-E sftsg DHNA_BACSU : 33- 42: sknim AvptvyLng-E sfgsg R34K_CLOPA : 28- 36: iyair Aklnt-Lvl-E nelvg R34K_CLOPA : 115- 124: iiatg Aksrr-LpipE eeklh TRXB_COXBU : 118- 126: atgas Arylg-Lps-E kpymg TRXB_ECOLI : 116- 124: atgas Arylg-Lps-E eafkg TRXB_ECOLI : 116- 125: atgas Arylg-LpseE afkgr TRXB_ECOLI : 250- 259: hspnt AifegqLel-E ngyik TRXB_HAEIN : 117- 125: atgas Aryig-Lps-E enykg TRXB_HAEIN : 117- 126: atgas Aryig-LpseE nykgr TRXB_HAEIN : 309- 317: maald Aery--LdaqE a TRXB_MYCLE : 33- 41: lyaar Aqltp-Lvf-E gtsfg TRXB_PENCH : 92- 100: atgan Arrln-Lpg-E etywq TRXB_PENCH : 92- 101: atgan Arrln-LpgeE tywqn TRXB_STRCL : 25- 33: lytar Aslqp-Lvf-E gavta YHQ6_YEAST : 41- 49: paaht Aaiy--LaraE mkptl YHQ6_YEAST : 146- 154: atgas Akrmh-Lpg-E etywq YHQ6_YEAST : 146- 155: atgas Akrmh-LpgeE tywqq YHQ6_YEAST : 334- 342: iaald Aery--LsaqE YTR4_YEAST : 51- 59: maald Aeky--LtslE R 18: 11.0102 27( 13) L-x(1,3)-A-x(0,1)-E Occurences: 27(13) AHPF_ECOLI : 39- 42: aeike Ll--A-E iaels AHPF_ECOLI : 40- 45: eikel LaeiA-E lsdkv AHPF_SALTY : 39- 42: aeike Ll--A-E iaels AHPF_SALTY : 40- 45: eikel LaeiA-E lsdkv AHPF_SALTY : 293- 299: qsask LvpaAtE gglhq AHPF_SALTY : 383- 389: vehvt LlefApE mkadq AHPF_SALTY : 384- 389: ehvtl Lef-ApE mkadq AHPF_SALTY : 458- 463: pnthw Leg-AlE rnrmg DHNA_BACSP : 382- 386: efmpe Lk--AdE vlqer DHNA_BACSU : 240- 245: nhvtv Lef-ApE lkade DHNA_BACSU : 246- 250: efape Lk--AdE vlqkr R34K_CLOPA : 299- 302: gtvaa Lm--A-E kyigg TRXB_COXBU : 182- 185: hrrdk Lr--A-E kmlsa TRXB_COXBU : 309- 312: gcmpa Ld--A-E rylds TRXB_ECOLI : 164- 170: eealy LsniAsE vhlih TRXB_ECOLI : 307- 310: gcmaa Ld--A-E ryldg TRXB_HAEIN : 70- 74: lmqrm Lqh-A-E kfete TRXB_HAEIN : 307- 310: gcmaa Ld--A-E rylda TRXB_HAEIN : 313- 317: daery Ld--AqE a TRXB_MYCLE : 79- 84: mreqa LrfgA-E lrted TRXB_MYCLE : 389- 395: mvapv LeeiAsE qrnql TRXB_PENCH : 204- 208: rvkdv Lsn-A-E evvea TRXB_PENCH : 204- 209: rvkdv Lsn-AeE vvean TRXB_STRCL : 299- 302: gcsaa Ld--A-E rylaa YHQ6_YEAST : 45- 49: taaiy Lar-A-E mkptl YHQ6_YEAST : 332- 335: gciaa Ld--A-E rylsa YHQ6_YEAST : 338- 342: daery Ls--AqE YTR4_YEAST : 49- 52: gcmaa Ld--A-E kylts S 19: 11.0102 34( 13) A-x(1,2)-L-x(1,3)-A Occurences: 34(13) AHPF_ECOLI : 25- 31: pveli At-LddsA ksaei AHPF_SALTY : 25- 31: pveli At-LddsA ksaei AHPF_SALTY : 138- 143: pdvvq AlnLm--A vlnpr AHPF_SALTY : 270- 275: egqkl AgaLk--A hvsdy AHPF_SALTY : 290- 296: idsqs AskLvp-A ategg AHPF_SALTY : 290- 297: idsqs AskLvpaA teggl AHPF_SALTY : 311- 315: etasg Av-Lk--A rsiii AHPF_SALTY : 507- 511: gegak As-Ls--A fdyli DHNA_BACSP : 498- 502: gsgat Aa-Lg--A fdyli DHNA_BACSU : 243- 248: tvlef ApeLk--A devlq DHNA_BACSU : 362- 366: gsgat Aa-Lg--A fdyli R34K_CLOPA : 17- 21: igagp Ag-Lt--A aiyai R34K_CLOPA : 17- 22: igagp Ag-Lta-A iyair R34K_CLOPA : 162- 169: savea AifLtkyA rniti R34K_CLOPA : 297- 301: sdgtv Aa-Lm--A ekyig TRXB_COXBU : 163- 170: tsvee AlyLshiA shvtl TRXB_COXBU : 262- 267: lemde AgyLr--A ksglq TRXB_ECOLI : 161- 168: tavee AlyLsniA sevhl TRXB_ECOLI : 237- 242: esldv Ag-Lfv-A ighsp TRXB_ECOLI : 305- 309: gtgcm Aa-Ld--A eryld TRXB_HAEIN : 162- 169: tavee AlyLaniA stvhl TRXB_HAEIN : 305- 309: gtgcm Aa-Ld--A eryld TRXB_MYCLE : 26- 30: pagyt Aa-Ly--A araql TRXB_MYCLE : 26- 31: pagyt Aa-Lya-A raqlt TRXB_MYCLE : 168- 175: samee AlfLtrfA rsvtl TRXB_MYCLE : 386- 393: pckmv ApvLeeiA seqrn TRXB_PENCH : 165- 170: asnim AdrLl--A hpkck TRXB_PENCH : 213- 219: eevve AngLfy-A vghdp TRXB_STRCL : 18- 23: pagyt Aa-Lyt-A raslq TRXB_STRCL : 161- 168: tamee AtfLsrfA ksvti TRXB_STRCL : 231- 237: trela AtgLfi-A vghdp TRXB_STRCL : 297- 301: gtgcs Aa-Ld--A eryla YHQ6_YEAST : 42- 48: aahta AiyLar-A emkpt YHQ6_YEAST : 137- 144: pvttd AiiLatgA sakrm YHQ6_YEAST : 193- 200: sacee AefLtkyA skvyi YHQ6_YEAST : 330- 334: gsgci Aa-Ld--A eryls YTR4_YEAST : 47- 51: gsgcm Aa-Ld--A ekylt T 20: 11.0102 24( 13) S-x(3,4)-A-x(1,3)-L Occurences: 24(13) AHPF_ECOLI : 89- 95: gheft Slvl-Al--L wtggh AHPF_SALTY : 89- 95: gheft Slvl-Al--L wtggh AHPF_SALTY : 366- 374: igggn SgveaAid-L agive AHPF_SALTY : 366- 374: igggn Sgve-AaidL agive DHNA_BACSP : 88- 94: gheft Slvl-Al--L qvsgr DHNA_BACSP : 196- 203: laqlg Sgpd-Ase-L adkdp DHNA_BACSP : 358- 366: igggn SgveaAid-L agivn DHNA_BACSP : 358- 366: igggn Sgve-AaidL agivn DHNA_BACSP : 491- 500: kqiii SmgsgAtaaL gafdy DHNA_BACSP : 494- 500: iismg Sgat-Aa--L gafdy DHNA_BACSU : 222- 230: igggn SgieaAid-L agivn DHNA_BACSU : 222- 230: igggn Sgie-AaidL agivn DHNA_BACSU : 355- 364: nqiii SmgsgAtaaL gafdy DHNA_BACSU : 358- 364: iismg Sgat-Aa--L gafdy R34K_CLOPA : 157- 165: vgggn SaveaAif-L tkyar R34K_CLOPA : 157- 165: vgggn Save-AaifL tkyar R34K_CLOPA : 292- 299: lttav SdgtvAa--L maeky TRXB_COXBU : 159- 166: gggnt Svee-Aly-L shias TRXB_ECOLI : 233- 239: sdnie Sldv-Ag--L fvaig TRXB_HAEIN : 2- 9: m SdikhAk--L lilgs TRXB_HAEIN : 2- 10: m SdikhAkl-L ilgsg TRXB_MYCLE : 163- 171: igggd SameeAlf-L trfar TRXB_PENCH : 26- 33: fpgfp SgiggAe--L mdnmr TRXB_PENCH : 134- 142: igggd SaaeeAmf-L akygs TRXB_PENCH : 161- 168: dklra Snim-Adr-L lahpk TRXB_PENCH : 161- 169: dklra Snim-AdrlL ahpkc TRXB_STRCL : 296- 305: agtgc SaaldAeryL aalad YHQ6_YEAST : 188- 196: igggd SaceeAef-L tkyas YHQ6_YEAST : 326- 332: vtsag Sgci-Aa--L daery YTR4_YEAST : 43- 49: itsag Sgcm-Aa--L daeky Number of patterns evaluated by Pratt:590 Total running time: 1 seconds