------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 37 sequences from file PYRIDINE_REDOX_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 37 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 45 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PYRIDINE_REDOX_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DLD1_PSEPU 459 DLD2_PSEPU 475 DLD3_PSEPU 466 DLDH_ACHLA 336 DLDH_AZOVI 477 DLDH_BACST 470 DLDH_BACSU 470 DLDH_ECOLI 473 DLDH_HAEIN 477 DLDH_HALVO 474 DLDH_HUMAN 509 DLDH_PEA 501 DLDH_PIG 509 DLDH_PSEFL 477 DLDH_TRYBB 479 DLDH_YEAST 499 GSHR_ARATH 565 GSHR_CAEEL 499 GSHR_ECOLI 450 GSHR_HAEIN 456 GSHR_HUMAN 478 GSHR_PEA 552 GSHR_PSEAE 451 GSHR_SPISP 58 GSHR_YEAST 467 MERA_BACSR 631 MERA_PSEAE 561 MERA_SERMA 460 MERA_SHIFL 564 MERA_STAAU 547 MERA_STRLI 474 MERA_THIFE 545 TYTR_CRIFA 491 TYTR_LEIDO 491 TYTR_TRYBB 492 TYTR_TRYCO 492 TYTR_TRYCR 492 Pratt run started at Thu Feb 6 20:56:30 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 37( 37) G-G-x-C-x(3)-G-C-x-P-x(0,1)-K 2: 24.5203 37( 37) G-x-C-x(3)-G-C-x-P-x(0,1)-K 3: 20.3503 37( 37) C-x(3)-G-C-x-P-x(0,1)-K 4: 16.1802 37( 37) G-C-x-P-x(0,1)-K 5: 12.0102 37( 37) C-x-P-x(0,1)-K 6: 12.0102 44( 37) G-T-x(4,5)-G 7: 11.5102 64( 37) V-x(2,4)-G-x-V 8: 11.5102 79( 37) T-x(1,2)-V-x(1,2)-G 9: 11.5102 50( 37) T-x(4)-G-x(3,5)-K 10: 11.5102 110( 37) V-x(1,2)-G-x(0,1)-G 11: 11.0102 120( 37) A-x(1,3)-G-x(1,2)-T 12: 11.0102 133( 37) I-x(1,3)-A-x(0,1)-G 13: 11.0102 82( 37) G-x(0,2)-T-x(2,3)-N 14: 11.0102 85( 37) L-x(0,2)-T-x(0,1)-G 15: 11.0102 93( 37) L-x(2,3)-A-x(1,3)-G 16: 11.0102 119( 37) V-x(0,1)-A-x(2,4)-A 17: 11.0102 120( 37) V-x(0,2)-A-x(3,4)-A 18: 11.0102 109( 37) V-x(1,3)-L-x(3,4)-G 19: 11.0102 135( 37) V-x(1,3)-L-x(2,3)-G 20: 11.0102 115( 37) V-x(1,2)-L-x(2,4)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 36.4786 37( 37) G-G-x-C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] B 2: 32.3086 37( 37) G-x-C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] C 3: 29.7111 37( 37) G-x-C-x(3)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] D 4: 28.1385 37( 37) C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] E 5: 21.3710 37( 37) G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] F 6: 17.2010 37( 37) C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] G 7: 13.6910 41( 37) T-x-[AGLV]-x(2)-G-x(3,5)-K H 8: 13.1594 62( 37) T-x(1,2)-V-x(1,2)-G-x(2)-[AGILPV] I 9: 12.0102 44( 37) G-T-x(4,5)-G J 10: 11.5102 64( 37) V-x(2,4)-G-x-V K 11: 11.5102 110( 37) V-x(1,2)-G-x(0,1)-G L 12: 11.0102 120( 37) A-x(1,3)-G-x(1,2)-T M 13: 11.0102 133( 37) I-x(1,3)-A-x(0,1)-G N 14: 11.0102 82( 37) G-x(0,2)-T-x(2,3)-N O 15: 11.0102 85( 37) L-x(0,2)-T-x(0,1)-G P 16: 11.0102 93( 37) L-x(2,3)-A-x(1,3)-G Q 17: 11.0102 119( 37) V-x(0,1)-A-x(2,4)-A R 18: 11.0102 120( 37) V-x(0,2)-A-x(3,4)-A S 19: 11.0102 109( 37) V-x(1,3)-L-x(3,4)-G T 20: 11.0102 135( 37) V-x(1,3)-L-x(2,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 36.4786 37( 37) G-G-x-C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 41- 56: egqal GGtCLniGCIPsKalI hvaeq DLD2_PSEPU : 45- 60: gklal GGtCLnvGCIPsKalL dsswk DLD3_PSEPU : 39- 54: grstl GGtCLnvGCMPsKalL hasel DLDH_ACHLA : 39- 54: ekevv GGiCLnhGCIPtKtfL ksakv DLDH_AZOVI : 46- 61: gktal GGtCLnvGCIPsKalL dssyk DLDH_BACST : 44- 59: ekgnl GGvCLnvGCIPsKalI sashr DLDH_BACSU : 44- 59: ekatl GGvCLnvGCIPsKalI naghr DLDH_ECOLI : 41- 56: ryntl GGvCLnvGCIPsKalL hvakv DLDH_HAEIN : 41- 56: rystl GGvCLnvGCIPsKalL hvakv DLDH_HALVO : 43- 58: ekday GGtCLnyGCIPsKalI tganl DLDH_HUMAN : 77- 92: knetl GGtCLnvGCIPsKalL nnshy DLDH_PEA : 73- 88: krgal GGtCLnvGCIPsKalL hsshm DLDH_PIG : 77- 92: knetl GGtCLnvGCIPsKalL nnshy DLDH_PSEFL : 45- 60: gkval GGtCLnvGCIPsKalL dssyk DLDH_TRYBB : 47- 62: krgal GGtCLnvGCIPsKalL hathm DLDH_YEAST : 62- 77: krgkl GGtCLnvGCIPsKalL nnshl GSHR_ARATH : 132- 146: taggv GGtCVlrGCVP-KklL vyask GSHR_ARATH : 132- 147: taggv GGtCVlrGCVPkKllV yasky GSHR_CAEEL : 64- 78: hswgi GGtCAnvGCIP-KkaL nskfq GSHR_ECOLI : 39- 53: eakel GGtCVnvGCVP-KkvM whaaq GSHR_HAEIN : 39- 53: eakhl GGtCVnvGCVP-KkvM fygah GSHR_HUMAN : 55- 69: eshkl GGtCVnvGCVP-KkvM wntav GSHR_PEA : 118- 132: ttggv GGtCVirGCVP-KklL vyask GSHR_PEA : 118- 133: ttggv GGtCVirGCVPkKllV yaskf GSHR_PSEAE : 39- 53: esryl GGtCVnvGCVP-KklL vygah GSHR_PSEAE : 39- 54: esryl GGtCVnvGCVPkKllV ygahf GSHR_SPISP : 10- 24: ensvv GGtCVirGCVP-KltL tgddt GSHR_YEAST : 42- 56: eakal GGtCVnvGCVP-KkvM wyasd MERA_BACSR : 204- 219: ergtv GGtCVnvGCVPsKtlL ragei MERA_PSEAE : 133- 148: ergti GGtCVnvGCVPsKimI raahi MERA_SERMA : 133- 148: ergti GGtCVnvGCVPsKimI raahi MERA_SHIFL : 132- 147: ergti GGtCVnvGCVPsKimI raahi MERA_STAAU : 120- 135: ergtv GGtCVniGCVPsKtmL ragei MERA_STRLI : 42- 57: ergtt GGtCVnvGCVPsKalL aaaea MERA_THIFE : 119- 134: ersti GGtCVniGCVPsKimI raahi TYTR_CRIFA : 49- 63: hyaal GGtCVnvGCVP-KklM vtgan TYTR_CRIFA : 49- 64: hyaal GGtCVnvGCVPkKlmV tgany TYTR_LEIDO : 49- 63: alval GGtCVnvGCVP-KklM vtgaq TYTR_LEIDO : 49- 64: alval GGtCVnvGCVPkKlmV tgaqy TYTR_TRYBB : 49- 63: hyaal GGtCVnvGCVP-KklM vtgaq TYTR_TRYBB : 49- 64: hyaal GGtCVnvGCVPkKlmV tgaqy TYTR_TRYCO : 49- 63: ffaal GGtCVnvGCVP-KklM vtgaq TYTR_TRYCO : 49- 64: ffaal GGtCVnvGCVPkKlmV tgaqy TYTR_TRYCR : 50- 64: ffsal GGtCVnvGCVP-KklM vtgaq TYTR_TRYCR : 50- 65: ffsal GGtCVnvGCVPkKlmV tgaqy B 2: 32.3086 37( 37) G-x-C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 42- 56: gqalg GtCLniGCIPsKalI hvaeq DLD2_PSEPU : 46- 60: klalg GtCLnvGCIPsKalL dsswk DLD3_PSEPU : 40- 54: rstlg GtCLnvGCMPsKalL hasel DLDH_ACHLA : 40- 54: kevvg GiCLnhGCIPtKtfL ksakv DLDH_AZOVI : 47- 61: ktalg GtCLnvGCIPsKalL dssyk DLDH_BACST : 45- 59: kgnlg GvCLnvGCIPsKalI sashr DLDH_BACSU : 45- 59: katlg GvCLnvGCIPsKalI naghr DLDH_ECOLI : 42- 56: yntlg GvCLnvGCIPsKalL hvakv DLDH_HAEIN : 42- 56: ystlg GvCLnvGCIPsKalL hvakv DLDH_HALVO : 44- 58: kdayg GtCLnyGCIPsKalI tganl DLDH_HUMAN : 78- 92: netlg GtCLnvGCIPsKalL nnshy DLDH_PEA : 74- 88: rgalg GtCLnvGCIPsKalL hsshm DLDH_PIG : 78- 92: netlg GtCLnvGCIPsKalL nnshy DLDH_PSEFL : 46- 60: kvalg GtCLnvGCIPsKalL dssyk DLDH_TRYBB : 48- 62: rgalg GtCLnvGCIPsKalL hathm DLDH_YEAST : 63- 77: rgklg GtCLnvGCIPsKalL nnshl GSHR_ARATH : 133- 146: aggvg GtCVlrGCVP-KklL vyask GSHR_ARATH : 133- 147: aggvg GtCVlrGCVPkKllV yasky GSHR_CAEEL : 65- 78: swgig GtCAnvGCIP-KkaL nskfq GSHR_ECOLI : 40- 53: akelg GtCVnvGCVP-KkvM whaaq GSHR_HAEIN : 40- 53: akhlg GtCVnvGCVP-KkvM fygah GSHR_HUMAN : 56- 69: shklg GtCVnvGCVP-KkvM wntav GSHR_PEA : 119- 132: tggvg GtCVirGCVP-KklL vyask GSHR_PEA : 119- 133: tggvg GtCVirGCVPkKllV yaskf GSHR_PSEAE : 40- 53: srylg GtCVnvGCVP-KklL vygah GSHR_PSEAE : 40- 54: srylg GtCVnvGCVPkKllV ygahf GSHR_SPISP : 11- 24: nsvvg GtCVirGCVP-KltL tgddt GSHR_YEAST : 43- 56: akalg GtCVnvGCVP-KkvM wyasd MERA_BACSR : 205- 219: rgtvg GtCVnvGCVPsKtlL ragei MERA_PSEAE : 134- 148: rgtig GtCVnvGCVPsKimI raahi MERA_SERMA : 134- 148: rgtig GtCVnvGCVPsKimI raahi MERA_SHIFL : 133- 147: rgtig GtCVnvGCVPsKimI raahi MERA_STAAU : 121- 135: rgtvg GtCVniGCVPsKtmL ragei MERA_STRLI : 43- 57: rgttg GtCVnvGCVPsKalL aaaea MERA_THIFE : 120- 134: rstig GtCVniGCVPsKimI raahi TYTR_CRIFA : 50- 63: yaalg GtCVnvGCVP-KklM vtgan TYTR_CRIFA : 50- 64: yaalg GtCVnvGCVPkKlmV tgany TYTR_LEIDO : 50- 63: lvalg GtCVnvGCVP-KklM vtgaq TYTR_LEIDO : 50- 64: lvalg GtCVnvGCVPkKlmV tgaqy TYTR_TRYBB : 50- 63: yaalg GtCVnvGCVP-KklM vtgaq TYTR_TRYBB : 50- 64: yaalg GtCVnvGCVPkKlmV tgaqy TYTR_TRYCO : 50- 63: faalg GtCVnvGCVP-KklM vtgaq TYTR_TRYCO : 50- 64: faalg GtCVnvGCVPkKlmV tgaqy TYTR_TRYCR : 51- 64: fsalg GtCVnvGCVP-KklM vtgaq TYTR_TRYCR : 51- 65: fsalg GtCVnvGCVPkKlmV tgaqy C 3: 29.7111 37( 37) G-x-C-x(3)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 42- 56: gqalg GtClniGCIPsKalI hvaeq DLD2_PSEPU : 46- 60: klalg GtClnvGCIPsKalL dsswk DLD3_PSEPU : 40- 54: rstlg GtClnvGCMPsKalL hasel DLDH_ACHLA : 40- 54: kevvg GiClnhGCIPtKtfL ksakv DLDH_AZOVI : 47- 61: ktalg GtClnvGCIPsKalL dssyk DLDH_BACST : 45- 59: kgnlg GvClnvGCIPsKalI sashr DLDH_BACSU : 45- 59: katlg GvClnvGCIPsKalI naghr DLDH_ECOLI : 42- 56: yntlg GvClnvGCIPsKalL hvakv DLDH_HAEIN : 42- 56: ystlg GvClnvGCIPsKalL hvakv DLDH_HALVO : 44- 58: kdayg GtClnyGCIPsKalI tganl DLDH_HUMAN : 78- 92: netlg GtClnvGCIPsKalL nnshy DLDH_PEA : 74- 88: rgalg GtClnvGCIPsKalL hsshm DLDH_PIG : 78- 92: netlg GtClnvGCIPsKalL nnshy DLDH_PSEFL : 46- 60: kvalg GtClnvGCIPsKalL dssyk DLDH_TRYBB : 48- 62: rgalg GtClnvGCIPsKalL hathm DLDH_YEAST : 63- 77: rgklg GtClnvGCIPsKalL nnshl GSHR_ARATH : 133- 146: aggvg GtCvlrGCVP-KklL vyask GSHR_ARATH : 133- 147: aggvg GtCvlrGCVPkKllV yasky GSHR_CAEEL : 65- 78: swgig GtCanvGCIP-KkaL nskfq GSHR_ECOLI : 40- 53: akelg GtCvnvGCVP-KkvM whaaq GSHR_HAEIN : 40- 53: akhlg GtCvnvGCVP-KkvM fygah GSHR_HUMAN : 56- 69: shklg GtCvnvGCVP-KkvM wntav GSHR_PEA : 119- 132: tggvg GtCvirGCVP-KklL vyask GSHR_PEA : 119- 133: tggvg GtCvirGCVPkKllV yaskf GSHR_PSEAE : 40- 53: srylg GtCvnvGCVP-KklL vygah GSHR_PSEAE : 40- 54: srylg GtCvnvGCVPkKllV ygahf GSHR_SPISP : 11- 24: nsvvg GtCvirGCVP-KltL tgddt GSHR_YEAST : 43- 56: akalg GtCvnvGCVP-KkvM wyasd MERA_BACSR : 205- 219: rgtvg GtCvnvGCVPsKtlL ragei MERA_PSEAE : 134- 148: rgtig GtCvnvGCVPsKimI raahi MERA_SERMA : 134- 148: rgtig GtCvnvGCVPsKimI raahi MERA_SHIFL : 133- 147: rgtig GtCvnvGCVPsKimI raahi MERA_STAAU : 121- 135: rgtvg GtCvniGCVPsKtmL ragei MERA_STRLI : 43- 57: rgttg GtCvnvGCVPsKalL aaaea MERA_THIFE : 120- 134: rstig GtCvniGCVPsKimI raahi TYTR_CRIFA : 50- 63: yaalg GtCvnvGCVP-KklM vtgan TYTR_CRIFA : 50- 64: yaalg GtCvnvGCVPkKlmV tgany TYTR_LEIDO : 50- 63: lvalg GtCvnvGCVP-KklM vtgaq TYTR_LEIDO : 50- 64: lvalg GtCvnvGCVPkKlmV tgaqy TYTR_TRYBB : 50- 63: yaalg GtCvnvGCVP-KklM vtgaq TYTR_TRYBB : 50- 64: yaalg GtCvnvGCVPkKlmV tgaqy TYTR_TRYCO : 50- 63: faalg GtCvnvGCVP-KklM vtgaq TYTR_TRYCO : 50- 64: faalg GtCvnvGCVPkKlmV tgaqy TYTR_TRYCR : 51- 64: fsalg GtCvnvGCVP-KklM vtgaq TYTR_TRYCR : 51- 65: fsalg GtCvnvGCVPkKlmV tgaqy D 4: 28.1385 37( 37) C-[ALV]-x(2)-G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 44- 56: alggt CLniGCIPsKalI hvaeq DLD2_PSEPU : 48- 60: alggt CLnvGCIPsKalL dsswk DLD3_PSEPU : 42- 54: tlggt CLnvGCMPsKalL hasel DLDH_ACHLA : 42- 54: vvggi CLnhGCIPtKtfL ksakv DLDH_AZOVI : 49- 61: alggt CLnvGCIPsKalL dssyk DLDH_BACST : 47- 59: nlggv CLnvGCIPsKalI sashr DLDH_BACSU : 47- 59: tlggv CLnvGCIPsKalI naghr DLDH_ECOLI : 44- 56: tlggv CLnvGCIPsKalL hvakv DLDH_HAEIN : 44- 56: tlggv CLnvGCIPsKalL hvakv DLDH_HALVO : 46- 58: ayggt CLnyGCIPsKalI tganl DLDH_HUMAN : 80- 92: tlggt CLnvGCIPsKalL nnshy DLDH_PEA : 76- 88: alggt CLnvGCIPsKalL hsshm DLDH_PIG : 80- 92: tlggt CLnvGCIPsKalL nnshy DLDH_PSEFL : 48- 60: alggt CLnvGCIPsKalL dssyk DLDH_TRYBB : 50- 62: alggt CLnvGCIPsKalL hathm DLDH_YEAST : 65- 77: klggt CLnvGCIPsKalL nnshl GSHR_ARATH : 135- 146: gvggt CVlrGCVP-KklL vyask GSHR_ARATH : 135- 147: gvggt CVlrGCVPkKllV yasky GSHR_CAEEL : 67- 78: giggt CAnvGCIP-KkaL nskfq GSHR_ECOLI : 42- 53: elggt CVnvGCVP-KkvM whaaq GSHR_HAEIN : 42- 53: hlggt CVnvGCVP-KkvM fygah GSHR_HUMAN : 58- 69: klggt CVnvGCVP-KkvM wntav GSHR_PEA : 121- 132: gvggt CVirGCVP-KklL vyask GSHR_PEA : 121- 133: gvggt CVirGCVPkKllV yaskf GSHR_PSEAE : 42- 53: ylggt CVnvGCVP-KklL vygah GSHR_PSEAE : 42- 54: ylggt CVnvGCVPkKllV ygahf GSHR_SPISP : 13- 24: vvggt CVirGCVP-KltL tgddt GSHR_YEAST : 45- 56: alggt CVnvGCVP-KkvM wyasd MERA_BACSR : 207- 219: tvggt CVnvGCVPsKtlL ragei MERA_PSEAE : 136- 148: tiggt CVnvGCVPsKimI raahi MERA_SERMA : 136- 148: tiggt CVnvGCVPsKimI raahi MERA_SHIFL : 135- 147: tiggt CVnvGCVPsKimI raahi MERA_STAAU : 123- 135: tvggt CVniGCVPsKtmL ragei MERA_STRLI : 45- 57: ttggt CVnvGCVPsKalL aaaea MERA_THIFE : 122- 134: tiggt CVniGCVPsKimI raahi TYTR_CRIFA : 52- 63: alggt CVnvGCVP-KklM vtgan TYTR_CRIFA : 52- 64: alggt CVnvGCVPkKlmV tgany TYTR_LEIDO : 52- 63: alggt CVnvGCVP-KklM vtgaq TYTR_LEIDO : 52- 64: alggt CVnvGCVPkKlmV tgaqy TYTR_TRYBB : 52- 63: alggt CVnvGCVP-KklM vtgaq TYTR_TRYBB : 52- 64: alggt CVnvGCVPkKlmV tgaqy TYTR_TRYCO : 52- 63: alggt CVnvGCVP-KklM vtgaq TYTR_TRYCO : 52- 64: alggt CVnvGCVPkKlmV tgaqy TYTR_TRYCR : 53- 64: alggt CVnvGCVP-KklM vtgaq TYTR_TRYCR : 53- 65: alggt CVnvGCVPkKlmV tgaqy E 5: 21.3710 37( 37) G-C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 48- 56: tclni GCIPsKalI hvaeq DLD2_PSEPU : 52- 60: tclnv GCIPsKalL dsswk DLD3_PSEPU : 46- 54: tclnv GCMPsKalL hasel DLDH_ACHLA : 46- 54: iclnh GCIPtKtfL ksakv DLDH_AZOVI : 53- 61: tclnv GCIPsKalL dssyk DLDH_BACST : 51- 59: vclnv GCIPsKalI sashr DLDH_BACSU : 51- 59: vclnv GCIPsKalI naghr DLDH_ECOLI : 48- 56: vclnv GCIPsKalL hvakv DLDH_HAEIN : 48- 56: vclnv GCIPsKalL hvakv DLDH_HALVO : 50- 58: tclny GCIPsKalI tganl DLDH_HUMAN : 84- 92: tclnv GCIPsKalL nnshy DLDH_PEA : 80- 88: tclnv GCIPsKalL hsshm DLDH_PIG : 84- 92: tclnv GCIPsKalL nnshy DLDH_PSEFL : 52- 60: tclnv GCIPsKalL dssyk DLDH_TRYBB : 54- 62: tclnv GCIPsKalL hathm DLDH_YEAST : 69- 77: tclnv GCIPsKalL nnshl GSHR_ARATH : 139- 146: tcvlr GCVP-KklL vyask GSHR_ARATH : 139- 147: tcvlr GCVPkKllV yasky GSHR_CAEEL : 71- 78: tcanv GCIP-KkaL nskfq GSHR_ECOLI : 46- 53: tcvnv GCVP-KkvM whaaq GSHR_HAEIN : 46- 53: tcvnv GCVP-KkvM fygah GSHR_HUMAN : 62- 69: tcvnv GCVP-KkvM wntav GSHR_PEA : 125- 132: tcvir GCVP-KklL vyask GSHR_PEA : 125- 133: tcvir GCVPkKllV yaskf GSHR_PSEAE : 46- 53: tcvnv GCVP-KklL vygah GSHR_PSEAE : 46- 54: tcvnv GCVPkKllV ygahf GSHR_SPISP : 17- 24: tcvir GCVP-KltL tgddt GSHR_YEAST : 49- 56: tcvnv GCVP-KkvM wyasd MERA_BACSR : 211- 219: tcvnv GCVPsKtlL ragei MERA_PSEAE : 140- 148: tcvnv GCVPsKimI raahi MERA_SERMA : 140- 148: tcvnv GCVPsKimI raahi MERA_SHIFL : 139- 147: tcvnv GCVPsKimI raahi MERA_STAAU : 127- 135: tcvni GCVPsKtmL ragei MERA_STRLI : 49- 57: tcvnv GCVPsKalL aaaea MERA_THIFE : 126- 134: tcvni GCVPsKimI raahi TYTR_CRIFA : 56- 63: tcvnv GCVP-KklM vtgan TYTR_CRIFA : 56- 64: tcvnv GCVPkKlmV tgany TYTR_LEIDO : 56- 63: tcvnv GCVP-KklM vtgaq TYTR_LEIDO : 56- 64: tcvnv GCVPkKlmV tgaqy TYTR_TRYBB : 56- 63: tcvnv GCVP-KklM vtgaq TYTR_TRYBB : 56- 64: tcvnv GCVPkKlmV tgaqy TYTR_TRYCO : 56- 63: tcvnv GCVP-KklM vtgaq TYTR_TRYCO : 56- 64: tcvnv GCVPkKlmV tgaqy TYTR_TRYCR : 57- 64: tcvnv GCVP-KklM vtgaq TYTR_TRYCR : 57- 65: tcvnv GCVPkKlmV tgaqy F 6: 17.2010 37( 37) C-[IMV]-P-x(0,1)-K-x(2)-[ILMV] Occurences: 37(37) DLD1_PSEPU : 49- 56: clnig CIPsKalI hvaeq DLD2_PSEPU : 53- 60: clnvg CIPsKalL dsswk DLD3_PSEPU : 47- 54: clnvg CMPsKalL hasel DLDH_ACHLA : 47- 54: clnhg CIPtKtfL ksakv DLDH_AZOVI : 54- 61: clnvg CIPsKalL dssyk DLDH_BACST : 52- 59: clnvg CIPsKalI sashr DLDH_BACSU : 52- 59: clnvg CIPsKalI naghr DLDH_ECOLI : 49- 56: clnvg CIPsKalL hvakv DLDH_HAEIN : 49- 56: clnvg CIPsKalL hvakv DLDH_HALVO : 51- 58: clnyg CIPsKalI tganl DLDH_HUMAN : 85- 92: clnvg CIPsKalL nnshy DLDH_PEA : 81- 88: clnvg CIPsKalL hsshm DLDH_PIG : 85- 92: clnvg CIPsKalL nnshy DLDH_PSEFL : 53- 60: clnvg CIPsKalL dssyk DLDH_TRYBB : 55- 62: clnvg CIPsKalL hathm DLDH_YEAST : 70- 77: clnvg CIPsKalL nnshl GSHR_ARATH : 140- 146: cvlrg CVP-KklL vyask GSHR_ARATH : 140- 147: cvlrg CVPkKllV yasky GSHR_CAEEL : 72- 78: canvg CIP-KkaL nskfq GSHR_ECOLI : 47- 53: cvnvg CVP-KkvM whaaq GSHR_HAEIN : 47- 53: cvnvg CVP-KkvM fygah GSHR_HUMAN : 63- 69: cvnvg CVP-KkvM wntav GSHR_PEA : 126- 132: cvirg CVP-KklL vyask GSHR_PEA : 126- 133: cvirg CVPkKllV yaskf GSHR_PSEAE : 47- 53: cvnvg CVP-KklL vygah GSHR_PSEAE : 47- 54: cvnvg CVPkKllV ygahf GSHR_SPISP : 18- 24: cvirg CVP-KltL tgddt GSHR_YEAST : 50- 56: cvnvg CVP-KkvM wyasd MERA_BACSR : 212- 219: cvnvg CVPsKtlL ragei MERA_PSEAE : 141- 148: cvnvg CVPsKimI raahi MERA_SERMA : 141- 148: cvnvg CVPsKimI raahi MERA_SHIFL : 140- 147: cvnvg CVPsKimI raahi MERA_STAAU : 128- 135: cvnig CVPsKtmL ragei MERA_STRLI : 50- 57: cvnvg CVPsKalL aaaea MERA_THIFE : 127- 134: cvnig CVPsKimI raahi TYTR_CRIFA : 57- 63: cvnvg CVP-KklM vtgan TYTR_CRIFA : 57- 64: cvnvg CVPkKlmV tgany TYTR_LEIDO : 57- 63: cvnvg CVP-KklM vtgaq TYTR_LEIDO : 57- 64: cvnvg CVPkKlmV tgaqy TYTR_TRYBB : 57- 63: cvnvg CVP-KklM vtgaq TYTR_TRYBB : 57- 64: cvnvg CVPkKlmV tgaqy TYTR_TRYCO : 57- 63: cvnvg CVP-KklM vtgaq TYTR_TRYCO : 57- 64: cvnvg CVPkKlmV tgaqy TYTR_TRYCR : 58- 64: cvnvg CVP-KklM vtgaq TYTR_TRYCR : 58- 65: cvnvg CVPkKlmV tgaqy G 7: 13.6910 41( 37) T-x-[AGLV]-x(2)-G-x(3,5)-K Occurences: 41(37) DLD1_PSEPU : 43- 53: qalgg TcLniGcips-K alihv DLD2_PSEPU : 47- 57: lalgg TcLnvGcips-K allds DLD3_PSEPU : 41- 51: stlgg TcLnvGcmps-K allha DLDH_ACHLA : 73- 83: dfgvs TsGevGfdws-K ivsrk DLDH_AZOVI : 48- 58: talgg TcLnvGcips-K allds DLDH_BACST : 100- 111: vvkkl TgGveGllkgnK veivk DLDH_BACSU : 100- 111: vvnkl TgGvaGllkgnK vdvvk DLDH_ECOLI : 97- 108: vinql TgGlaGmakgrK vkvvn DLDH_HAEIN : 97- 108: vvakl TgGlaGmakarK vtvve DLDH_HALVO : 45- 55: daygg TcLnyGcips-K alitg DLDH_HUMAN : 79- 89: etlgg TcLnvGcips-K allnn DLDH_PEA : 75- 85: galgg TcLnvGcips-K allhs DLDH_PEA : 130- 139: avsnl TrGieGlfk--K nkvty DLDH_PEA : 130- 141: avsnl TrGieGlfkknK vtyvk DLDH_PIG : 79- 89: etlgg TcLnvGcips-K allnn DLDH_PSEFL : 47- 57: valgg TcLnvGcips-K allds DLDH_TRYBB : 49- 59: galgg TcLnvGcips-K allha DLDH_YEAST : 64- 74: gklgg TcLnvGcips-K allnn GSHR_ARATH : 134- 143: ggvgg TcVlrGcvp--K kllvy GSHR_ARATH : 134- 144: ggvgg TcVlrGcvpk-K llvya GSHR_CAEEL : 66- 75: wgigg TcAnvGcip--K kalns GSHR_CAEEL : 66- 76: wgigg TcAnvGcipk-K alnsk GSHR_ECOLI : 41- 50: kelgg TcVnvGcvp--K kvmwh GSHR_ECOLI : 41- 51: kelgg TcVnvGcvpk-K vmwha GSHR_HAEIN : 41- 50: khlgg TcVnvGcvp--K kvmfy GSHR_HAEIN : 41- 51: khlgg TcVnvGcvpk-K vmfyg GSHR_HUMAN : 57- 66: hklgg TcVnvGcvp--K kvmwn GSHR_HUMAN : 57- 67: hklgg TcVnvGcvpk-K vmwnt GSHR_PEA : 120- 129: ggvgg TcVirGcvp--K kllvy GSHR_PEA : 120- 130: ggvgg TcVirGcvpk-K llvya GSHR_PEA : 314- 324: spvai TkAadGslsl-K tnkgt GSHR_PSEAE : 41- 50: rylgg TcVnvGcvp--K kllvy GSHR_PSEAE : 41- 51: rylgg TcVnvGcvpk-K llvyg GSHR_SPISP : 12- 21: svvgg TcVirGcvp--K ltltg GSHR_YEAST : 44- 53: kalgg TcVnvGcvp--K kvmwy GSHR_YEAST : 44- 54: kalgg TcVnvGcvpk-K vmwya MERA_BACSR : 206- 216: gtvgg TcVnvGcvps-K tllra MERA_PSEAE : 54- 63: spdal TaAvaGlgy--K atlad MERA_PSEAE : 135- 145: gtigg TcVnvGcvps-K imira MERA_SERMA : 54- 63: apdal TaAvaGlgy--K amlad MERA_SERMA : 135- 145: gtigg TcVnvGcvps-K imira MERA_SHIFL : 134- 144: gtigg TcVnvGcvps-K imira MERA_STAAU : 122- 132: gtvgg TcVniGcvps-K tmlra MERA_STRLI : 44- 54: gttgg TcVnvGcvps-K allaa MERA_THIFE : 121- 131: stigg TcVniGcvps-K imira TYTR_CRIFA : 51- 60: aalgg TcVnvGcvp--K klmvt TYTR_CRIFA : 51- 61: aalgg TcVnvGcvpk-K lmvtg TYTR_LEIDO : 51- 60: valgg TcVnvGcvp--K klmvt TYTR_LEIDO : 51- 61: valgg TcVnvGcvpk-K lmvtg TYTR_TRYBB : 51- 60: aalgg TcVnvGcvp--K klmvt TYTR_TRYBB : 51- 61: aalgg TcVnvGcvpk-K lmvtg TYTR_TRYCO : 51- 60: aalgg TcVnvGcvp--K klmvt TYTR_TRYCO : 51- 61: aalgg TcVnvGcvpk-K lmvtg TYTR_TRYCR : 52- 61: salgg TcVnvGcvp--K klmvt TYTR_TRYCR : 52- 62: salgg TcVnvGcvpk-K lmvtg H 8: 13.1594 62( 37) T-x(1,2)-V-x(1,2)-G-x(2)-[AGILPV] Occurences: 62(37) DLD1_PSEPU : 32- 40: qlgip TvlVe-GqaL ggtcl DLD2_PSEPU : 307- 314: ddyca Ts-Vp-GvyA svtwy DLD2_PSEPU : 408- 416: iadak TdrVl-GvhV igpsa DLD3_PSEPU : 303- 310: qrtpp Ts-Vp-GvwV igdvt DLD3_PSEPU : 405- 413: iadae TdeVl-GvhL vgpsv DLDH_ACHLA : 294- 301: neylq Tn-Vp-GvyA igdvn DLDH_AZOVI : 309- 316: ddyca Ts-Vp-GvyA igdvv DLDH_AZOVI : 411- 419: iadak TdrVl-GvhV igpsa DLDH_BACST : 12- 19: aiete Tl-Vv-GagP ggyva DLDH_BACST : 12- 21: aiete TlvVgaGpgG yvaai DLDH_BACST : 36- 44: lgqkv Ti-VekGnlG gvcln DLDH_BACST : 126- 135: fvdan TvrVvnGdsA qtytf DLDH_BACSU : 12- 19: pietd Tl-Vi-GagP ggyva DLDH_ECOLI : 6- 15: steik TqvVvlGagP agysa DLDH_ECOLI : 123- 131: ftgan TleVe-GenG ktvin DLDH_HAEIN : 6- 15: skeik TqvVvlGagP agysa DLDH_HAEIN : 404- 412: ifdkd ThrVl-GgaI vgsng DLDH_HAEIN : 404- 413: ifdkd ThrVlgGaiV gsngg DLDH_HALVO : 378- 385: eeagf Tp-Vv-GqmP frasg DLDH_HUMAN : 447- 455: lgqks TdrVl-GahI lgpga DLDH_PEA : 167- 174: iegen Tv-Vk-GkhI iiatg DLDH_PEA : 338- 345: nerfs Tn-Vs-GvyA igdvi DLDH_PIG : 447- 455: lgqks TdrVl-GahI igpga DLDH_PSEFL : 308- 315: ddhck Ts-Vp-GvfA igdvv DLDH_PSEFL : 410- 418: iadak TdrVl-GvhV igpsa DLDH_TRYBB : 131- 139: fvtpn TlnVk-GidG kdeai DLDH_TRYBB : 315- 322: gshfe Tn-Va-GvyA igdvv DLDH_YEAST : 150- 157: tkirv Tp-Vd-GleG tvked GSHR_ARATH : 134- 142: ggvgg Tc-VlrGcvP kkllv GSHR_CAEEL : 200- 208: svpgk TliVg-GgyV aleca GSHR_CAEEL : 200- 209: svpgk TliVggGyvA lecag GSHR_ECOLI : 41- 49: kelgg Tc-VnvGcvP kkvmw GSHR_ECOLI : 122- 130: fvdak TleVn-GetI tadhi GSHR_HAEIN : 41- 49: khlgg Tc-VnvGcvP kkvmf GSHR_HAEIN : 298- 305: dkyqn Tn-Vk-GiyA vgdii GSHR_HUMAN : 57- 65: hklgg Tc-VnvGcvP kkvmw GSHR_HUMAN : 267- 274: evsmv Ta-Vp-GrlP vmtmi GSHR_HUMAN : 321- 328: defqn Tn-Vk-GiyA vgdvc GSHR_PEA : 114- 122: issdt TggVg-GtcV irgcv GSHR_PEA : 120- 128: ggvgg Tc-VirGcvP kkllv GSHR_PSEAE : 41- 49: rylgg Tc-VnvGcvP kkllv GSHR_SPISP : 12- 20: svvgg Tc-VirGcvP kltlt GSHR_YEAST : 44- 52: kalgg Tc-VnvGcvP kkvmw GSHR_YEAST : 207- 216: glgse ThlVirGetV lrkfd MERA_BACSR : 206- 214: gtvgg Tc-VnvGcvP sktll MERA_BACSR : 287- 295: fvnen TveVn-GnqI takrf MERA_BACSR : 565- 573: vadak TlkVl-GahV vaena MERA_BACSR : 586- 595: viyaa TlaVkfGltV gdlre MERA_PSEAE : 135- 143: gtigg Tc-VnvGcvP skimi MERA_PSEAE : 537- 544: lfpyl Tm-Ve-GlkL aaqtf MERA_SERMA : 135- 143: gtigg Tc-VnvGcvP skimi MERA_SERMA : 436- 443: lfpyl Tm-Ve-GlkL aaqtf MERA_SHIFL : 134- 142: gtigg Tc-VnvGcvP skimi MERA_SHIFL : 540- 547: lfpyl Tm-Ve-GlkL aaqtf MERA_STAAU : 122- 130: gtvgg Tc-VniGcvP sktml MERA_STAAU : 203- 211: fiddk TiqVn-GqnI tsksf MERA_STAAU : 502- 511: viyaa TlaVqfGltI edltd MERA_STRLI : 44- 52: gttgg Tc-VnvGcvP skall MERA_THIFE : 121- 129: stigg Tc-VniGcvP skimi MERA_THIFE : 521- 528: lfpyl Tm-Ve-GlkL aaqtf TYTR_CRIFA : 51- 59: aalgg Tc-VnvGcvP kklmv TYTR_LEIDO : 51- 59: valgg Tc-VnvGcvP kklmv TYTR_TRYBB : 51- 59: aalgg Tc-VnvGcvP kklmv TYTR_TRYCO : 51- 59: aalgg Tc-VnvGcvP kklmv TYTR_TRYCR : 52- 60: salgg Tc-VnvGcvP kklmv I 9: 12.0102 44( 37) G-T-x(4,5)-G Occurences: 44(37) DLD1_PSEPU : 42- 48: gqalg GTclni-G cipsk DLD2_PSEPU : 46- 52: klalg GTclnv-G cipsk DLD2_PSEPU : 119- 126: ftsfq GTgkllaG kkvev DLD2_PSEPU : 435- 442: iamef GTsaedlG mmvfs DLD3_PSEPU : 40- 46: rstlg GTclnv-G cmpsk DLDH_ACHLA : 266- 273: ilmsv GTranskG lehlg DLDH_AZOVI : 47- 53: ktalg GTclnv-G cipsk DLDH_AZOVI : 438- 445: iamef GTsaedlG mmvfa DLDH_BACST : 192- 199: igiel GTayanfG tkvti DLDH_BACSU : 192- 199: igtel GTayanfG telvi DLDH_ECOLI : 190- 197: iglem GTvyhalG sqidv DLDH_HAEIN : 191- 198: iglem GTvynalG sevev DLDH_HALVO : 8- 15: gdiat GTellviG agpgg DLDH_HALVO : 44- 50: kdayg GTclny-G cipsk DLDH_HUMAN : 78- 84: netlg GTclnv-G cipsk DLDH_HUMAN : 103- 110: yhmah GTdfasrG iemse DLDH_PEA : 74- 80: rgalg GTclnv-G cipsk DLDH_PIG : 78- 84: netlg GTclnv-G cipsk DLDH_PSEFL : 46- 52: kvalg GTclnv-G cipsk DLDH_PSEFL : 437- 444: igmef GTsaedlG mmvfs DLDH_TRYBB : 48- 54: rgalg GTclnv-G cipsk DLDH_YEAST : 63- 69: rgklg GTclnv-G cipsk GSHR_ARATH : 133- 139: aggvg GTcvlr-G cvpkk GSHR_CAEEL : 65- 71: swgig GTcanv-G cipkk GSHR_ECOLI : 40- 46: akelg GTcvnv-G cvpkk GSHR_HAEIN : 40- 46: akhlg GTcvnv-G cvpkk GSHR_HUMAN : 56- 62: shklg GTcvnv-G cvpkk GSHR_PEA : 119- 125: tggvg GTcvir-G cvpkk GSHR_PSEAE : 40- 46: srylg GTcvnv-G cvpkk GSHR_SPISP : 11- 17: nsvvg GTcvir-G cvpkl GSHR_YEAST : 43- 49: akalg GTcvnv-G cvpkk MERA_BACSR : 205- 211: rgtvg GTcvnv-G cvpsk MERA_PSEAE : 134- 140: rgtig GTcvnv-G cvpsk MERA_SERMA : 134- 140: rgtig GTcvnv-G cvpsk MERA_SHIFL : 133- 139: rgtig GTcvnv-G cvpsk MERA_STAAU : 121- 127: rgtvg GTcvni-G cvpsk MERA_STRLI : 43- 49: rgttg GTcvnv-G cvpsk MERA_STRLI : 117- 124: wqivh GTatfadG pmlev MERA_THIFE : 120- 126: rstig GTcvni-G cvpsk TYTR_CRIFA : 50- 56: yaalg GTcvnv-G cvpkk TYTR_LEIDO : 50- 56: lvalg GTcvnv-G cvpkk TYTR_TRYBB : 50- 56: yaalg GTcvnv-G cvpkk TYTR_TRYCO : 50- 56: faalg GTcvnv-G cvpkk TYTR_TRYCR : 51- 57: fsalg GTcvnv-G cvpkk J 10: 11.5102 64( 37) V-x(2,4)-G-x-V Occurences: 64(37) DLD1_PSEPU : 89- 96: digqs VawkdGiV drltt DLD1_PSEPU : 301- 307: tsmhn Vwai-GdV agepm DLD2_PSEPU : 91- 98: dvaam VgrkaGiV knltg DLD2_PSEPU : 98- 105: rkagi VknltGgV atlfk DLD3_PSEPU : 308- 314: tsvpg Vwvi-GdV tsgpm DLDH_ACHLA : 71- 77: smdfg Vsts-GeV gfdws DLDH_ACHLA : 85- 92: dwski VsrkdGvV kqltn DLDH_ACHLA : 177- 183: ypksi Vivg-GgV igvef DLDH_ACHLA : 299- 305: tnvpg Vyai-GdV ngkfm DLDH_AZOVI : 99- 106: rkdqi VrnltGgV aslik DLDH_AZOVI : 314- 320: tsvpg Vyai-GdV vrgam DLDH_BACST : 96- 103: wkasv VkkltGgV egllk DLDH_BACSU : 96- 103: wkasv VnkltGgV agllk DLDH_ECOLI : 266- 273: qryda VlvaiGrV pngkn DLDH_ECOLI : 268- 273: ydavl Vai--GrV pngkn DLDH_ECOLI : 324- 329: lahkg Vhe--GhV aaevi DLDH_HAEIN : 266- 273: kryda VlvaiGrV pngkl DLDH_HAEIN : 268- 273: ydavl Vai--GrV pngkl DLDH_HAEIN : 324- 329: lahkg Vhe--GhV aaevi DLDH_HALVO : 94- 101: wksgv VdqltGgV eklck DLDH_HALVO : 328- 335: pmlah VaskeGiV aaehv DLDH_HUMAN : 226- 231: agvig Vel--GsV wqrlg DLDH_HUMAN : 242- 248: advta Vefl-GhV ggvgi DLDH_PEA : 343- 349: tnvsg Vyai-GdV ipgpm DLDH_PEA : 367- 374: dgvac VeylaGkV ghvdy DLDH_PIG : 226- 231: agvig Vel--GsV wqrlg DLDH_PIG : 242- 248: advta Vell-GhV ggigi DLDH_PSEFL : 313- 319: tsvpg Vfai-GdV vrgam DLDH_TRYBB : 187- 193: vpkkm Vvig-GgV iglel DLDH_TRYBB : 188- 193: pkkmv Vig--GgV iglel DLDH_TRYBB : 320- 326: tnvag Vyai-GdV vdkgp DLDH_TRYBB : 403- 410: sraka VatedGfV kvltd DLDH_YEAST : 152- 159: irvtp VdgleGtV kedhi GSHR_ARATH : 136- 141: vggtc Vlr--GcV pkkll GSHR_CAEEL : 203- 208: gktli Vgg--GyV aleca GSHR_CAEEL : 286- 293: eeydt ViwaaGrV pnlks GSHR_ECOLI : 43- 48: lggtc Vnv--GcV pkkvm GSHR_ECOLI : 301- 308: egiya VgdntGaV eltpv GSHR_HAEIN : 43- 48: lggtc Vnv--GcV pkkvm GSHR_HAEIN : 262- 269: vtvdc ViwaaGrV pttdk GSHR_HUMAN : 59- 64: lggtc Vnv--GcV pkkvm GSHR_PEA : 122- 127: vggtc Vir--GcV pkkll GSHR_PSEAE : 43- 48: lggtc Vnv--GcV pkkll GSHR_SPISP : 14- 19: vggtc Vir--GcV pkltl GSHR_YEAST : 46- 51: lggtc Vnv--GcV pkkvm MERA_BACSR : 208- 213: vggtc Vnv--GcV psktl MERA_BACSR : 574- 581: lgahv VaenaGdV iyaat MERA_PSEAE : 137- 142: iggtc Vnv--GcV pskim MERA_SERMA : 137- 142: iggtc Vnv--GcV pskim MERA_SHIFL : 136- 141: iggtc Vnv--GcV pskim MERA_STAAU : 114- 119: akvam Ver--GtV ggtcv MERA_STAAU : 124- 129: vggtc Vni--GcV psktm MERA_STAAU : 490- 497: igahi VsenaGdV iyaat MERA_STRLI : 46- 51: tggtc Vnv--GcV pskal MERA_THIFE : 47- 53: datar Vvle-GeV pmqrl MERA_THIFE : 48- 53: atarv Vle--GeV pmqrl MERA_THIFE : 123- 128: iggtc Vni--GcV pskim TYTR_CRIFA : 53- 58: lggtc Vnv--GcV pkklm TYTR_CRIFA : 281- 288: adydv VmlaiGrV prsqt TYTR_LEIDO : 53- 58: lggtc Vnv--GcV pkklm TYTR_TRYBB : 53- 58: lggtc Vnv--GcV pkklm TYTR_TRYCO : 53- 58: lggtc Vnv--GcV pkklm TYTR_TRYCR : 54- 59: lggtc Vnv--GcV pkklm TYTR_TRYCR : 302- 309: lqnag VmiknGgV qvdey K 11: 11.5102 110( 37) V-x(1,2)-G-x(0,1)-G Occurences: 110(37) DLD1_PSEPU : 176- 180: lpqhl VvvG-G gyigl DLD1_PSEPU : 176- 181: lpqhl VvvGgG yigle DLD1_PSEPU : 177- 180: pqhlv Vv-G-G gyigl DLD1_PSEPU : 177- 181: pqhlv VvgG-G yigle DLD1_PSEPU : 177- 181: pqhlv Vv-GgG yigle DLD1_PSEPU : 178- 181: qhlvv Vg-G-G yigle DLD2_PSEPU : 7- 12: qkfdv VviGaG pggyv DLD2_PSEPU : 8- 12: kfdvv Vi-GaG pggyv DLD2_PSEPU : 185- 189: pkrlg Vi-GaG vigle DLD2_PSEPU : 462- 465: eaala Vn-G-G aihva DLD3_PSEPU : 7- 11: ksydv ViiG-G gpggy DLD3_PSEPU : 7- 12: ksydv ViiGgG pggyn DLD3_PSEPU : 178- 183: vpkhl VviGaG vigle DLD3_PSEPU : 179- 183: pkhlv Vi-GaG vigle DLDH_ACHLA : 10- 13: yeiii Vg-G-G pggyv DLDH_ACHLA : 10- 15: yeiii VggGpG gyvaa DLDH_ACHLA : 37- 40: lveke Vv-G-G iclnh DLDH_ACHLA : 110- 115: kngvd VynGfG diksa DLDH_ACHLA : 177- 181: ypksi VivG-G gvigv DLDH_ACHLA : 177- 182: ypksi VivGgG vigve DLDH_ACHLA : 179- 182: ksivi Vg-G-G vigve DLDH_AZOVI : 9- 13: kfdvi Vi-GaG pggyv DLDH_AZOVI : 186- 190: pgklg Vi-GaG vigle DLDH_BACST : 14- 18: etetl Vv-GaG pggyv DLDH_BACST : 15- 20: tetlv VgaGpG gyvaa DLDH_BACST : 180- 184: vpksl VviG-G gyigi DLDH_BACST : 180- 185: vpksl VviGgG yigie DLDH_BACST : 181- 184: pkslv Vi-G-G gyigi DLDH_BACST : 181- 185: pkslv VigG-G yigie DLDH_BACST : 181- 185: pkslv Vi-GgG yigie DLDH_BACSU : 14- 18: etdtl Vi-GaG pggyv DLDH_BACSU : 180- 184: ipkkl VviG-G gyigt DLDH_BACSU : 180- 185: ipkkl VviGgG yigte DLDH_BACSU : 181- 184: pkklv Vi-G-G gyigt DLDH_BACSU : 181- 185: pkklv VigG-G yigte DLDH_BACSU : 181- 185: pkklv Vi-GgG yigte DLDH_ECOLI : 9- 14: iktqv VvlGaG pagys DLDH_ECOLI : 10- 14: ktqvv Vl-GaG pagys DLDH_ECOLI : 111- 116: grkvk VvnGlG kftga DLDH_ECOLI : 112- 116: rkvkv Vn-GlG kftga DLDH_ECOLI : 179- 182: perll Vm-G-G giigl DLDH_ECOLI : 179- 183: perll VmgG-G iigle DLDH_ECOLI : 179- 183: perll Vm-GgG iigle DLDH_ECOLI : 407- 410: keshr Vi-G-G aivgt DLDH_HAEIN : 9- 14: iktqv VvlGaG pagys DLDH_HAEIN : 10- 14: ktqvv Vl-GaG pagys DLDH_HAEIN : 407- 410: kdthr Vl-G-G aivgs DLDH_HALVO : 13- 17: gtell Vi-GaG pggyv DLDH_HALVO : 182- 186: vperl VvvG-G gyigm DLDH_HALVO : 182- 187: vperl VvvGgG yigme DLDH_HALVO : 183- 186: perlv Vv-G-G gyigm DLDH_HALVO : 183- 187: perlv VvgG-G yigme DLDH_HALVO : 183- 187: perlv Vv-GgG yigme DLDH_HALVO : 184- 187: erlvv Vg-G-G yigme DLDH_HUMAN : 46- 50: dadvt Vi-GsG pggyv DLDH_HUMAN : 150- 154: nkvvh Vn-GyG kitgk DLDH_HUMAN : 217- 222: vpekm VviGaG vigve DLDH_HUMAN : 218- 222: pekmv Vi-GaG vigve DLDH_HUMAN : 248- 252: eflgh Vg-GvG idmei DLDH_PEA : 41- 45: dendv ViiG-G gpggy DLDH_PEA : 41- 46: dendv ViiGgG pggyv DLDH_PEA : 145- 149: nkvty Vk-GyG kfvsp DLDH_PEA : 212- 217: ipkkl VviGaG yigle DLDH_PEA : 213- 217: pkklv Vi-GaG yigle DLDH_PIG : 46- 50: dadvt Vi-GsG pggyv DLDH_PIG : 150- 154: nkvvr Vn-GyG kitgk DLDH_PIG : 217- 222: vpekm VviGaG vigve DLDH_PIG : 218- 222: pekmv Vi-GaG vigve DLDH_PIG : 248- 252: ellgh Vg-GiG idmev DLDH_PSEFL : 7- 12: qkfdv VviGaG pggyv DLDH_PSEFL : 8- 12: kfdvv Vi-GaG pggyv DLDH_PSEFL : 42- 46: gkegk ValG-G tclnv DLDH_PSEFL : 185- 189: pkklg Vi-GaG vigle DLDH_TRYBB : 15- 19: npydv VvvG-G gpggy DLDH_TRYBB : 15- 20: npydv VvvGgG pggyv DLDH_TRYBB : 16- 19: pydvv Vv-G-G gpggy DLDH_TRYBB : 16- 20: pydvv VvgG-G pggyv DLDH_TRYBB : 16- 20: pydvv Vv-GgG pggyv DLDH_TRYBB : 17- 20: ydvvv Vg-G-G pggyv DLDH_TRYBB : 17- 22: ydvvv VggGpG gyvaa DLDH_TRYBB : 187- 191: vpkkm VviG-G gvigl DLDH_TRYBB : 187- 192: vpkkm VviGgG vigle DLDH_TRYBB : 188- 191: pkkmv Vi-G-G gvigl DLDH_TRYBB : 188- 192: pkkmv VigG-G vigle DLDH_TRYBB : 188- 192: pkkmv Vi-GgG vigle DLDH_YEAST : 30- 34: kshdv ViiG-G gpagy DLDH_YEAST : 30- 35: kshdv ViiGgG pagyv GSHR_ARATH : 266- 269: kkiai Vg-G-G yiale GSHR_CAEEL : 25- 29: kfdli Vi-GaG sggls GSHR_CAEEL : 203- 206: gktli Vg-G-G yvale GSHR_ECOLI : 172- 176: perva Vv-GaG yiave GSHR_ECOLI : 185- 190: velag VinGlG akthl GSHR_HAEIN : 110- 115: knnid VinGfG kfvda GSHR_HAEIN : 177- 181: pkraa Vi-GaG yiave GSHR_HUMAN : 25- 28: sydyl Vi-G-G gsggl GSHR_HUMAN : 25- 29: sydyl VigG-G sggla GSHR_HUMAN : 25- 29: sydyl Vi-GgG sggla GSHR_HUMAN : 191- 196: lpgrs VivGaG yiave GSHR_PEA : 216- 220: akhil VsvG-G rpfip GSHR_PEA : 252- 255: qkiai Vg-G-G yiale GSHR_PSEAE : 9- 13: dfdlf Vi-GaG sggvr GSHR_PSEAE : 136- 140: akhil VatG-G wpqvp GSHR_PSEAE : 171- 174: prrvl Vv-G-G gyiav GSHR_PSEAE : 171- 175: prrvl VvgG-G yiave GSHR_PSEAE : 171- 175: prrvl Vv-GgG yiave GSHR_PSEAE : 172- 175: rrvlv Vg-G-G yiave GSHR_SPISP : 8- 11: iaens Vv-G-G tcvir GSHR_YEAST : 12- 15: hydyl Vi-G-G gsggv GSHR_YEAST : 12- 16: hydyl VigG-G sggva GSHR_YEAST : 12- 16: hydyl Vi-GgG sggva GSHR_YEAST : 150- 154: anhil VatG-G kaifp GSHR_YEAST : 185- 190: qpkkv VvvGaG yigie GSHR_YEAST : 186- 190: pkkvv Vv-GaG yigie GSHR_YEAST : 199- 204: ielag VfhGlG sethl MERA_BACSR : 339- 343: pnrlt Vi-GsG yigme MERA_PSEAE : 57- 61: altaa Va-GlG ykatl MERA_PSEAE : 103- 107: pvqva Vi-GsG gaama MERA_SERMA : 57- 61: altaa Va-GlG ykaml MERA_SERMA : 103- 107: plqva Vi-GsG gaama MERA_SHIFL : 57- 61: altaa Va-GlG yratl MERA_SHIFL : 102- 106: alhia Vi-GsG gaama MERA_SHIFL : 494- 499: fiklv VeeGsG rligv MERA_STAAU : 255- 259: pqrla Vi-GsG yiaae MERA_STRLI : 278- 283: tgrrs VtnGlG lervg MERA_THIFE : 63- 68: likav VasGyG vhprs MERA_THIFE : 89- 93: elhia Vi-GtG gaama TYTR_CRIFA : 8- 13: raydl VviGaG sggle TYTR_CRIFA : 9- 13: aydlv Vi-GaG sggle TYTR_CRIFA : 194- 197: kralc Vg-G-G yisie TYTR_LEIDO : 8- 13: raydl VvlGaG sggle TYTR_LEIDO : 9- 13: aydlv Vl-GaG sggle TYTR_LEIDO : 46- 50: gppal ValG-G tcvnv TYTR_LEIDO : 194- 197: krmlc Vg-G-G yiave TYTR_LEIDO : 349- 352: vllet Vf-G-G kprat TYTR_TRYBB : 8- 13: kifdl VviGaG sggle TYTR_TRYBB : 9- 13: ifdlv Vi-GaG sggle TYTR_TRYBB : 194- 197: rrvlt Vg-G-G fisve TYTR_TRYCO : 8- 13: kafdl ViiGaG sggle TYTR_TRYCO : 194- 197: rrvlt Vg-G-G fisve TYTR_TRYCR : 9- 14: kifdl VviGaG sggle TYTR_TRYCR : 10- 14: ifdlv Vi-GaG sggle TYTR_TRYCR : 195- 198: rrvlt Vg-G-G fisve L 12: 11.0102 120( 37) A-x(1,3)-G-x(1,2)-T Occurences: 120(37) DLD1_PSEPU : 25- 32: vaair AgqlGipT vlveg DLD1_PSEPU : 39- 43: lvegq Al--Gg-T clnig DLD2_PSEPU : 22- 29: vaaik AaqlGlkT aciek DLD2_PSEPU : 23- 29: aaika Aql-GlkT aciek DLD2_PSEPU : 43- 47: aegkl Al--Gg-T clnvg DLD2_PSEPU : 134- 138: vevtk Ad--Gt-T eviea DLD2_PSEPU : 286- 292: ttdll AadsGv-T iderg DLD2_PSEPU : 287- 292: tdlla Ads-Gv-T iderg DLD2_PSEPU : 362- 367: thpei Awv-Gk-T eqalk DLD3_PSEPU : 22- 28: naair AgqlGl-T vacve DLD3_PSEPU : 30- 37: lgltv AcveGrsT lggtc DLD3_PSEPU : 127- 133: kvvvk Aed-GseT alqak DLD3_PSEPU : 255- 259: lvlep Aa--Gg-T aeslq DLD3_PSEPU : 358- 363: trpel Atv-Gk-T eeqlk DLDH_ACHLA : 315- 321: mlahv AeheGi-T avqhi DLDH_AZOVI : 24- 30: aaiks Aql-GlkT aliek DLDH_AZOVI : 44- 48: kegkt Al--Gg-T clnvg DLDH_AZOVI : 112- 116: aslik An--Gv-T lfegh DLDH_AZOVI : 288- 294: ttdll AadsGv-T lderg DLDH_AZOVI : 289- 294: tdlla Ads-Gv-T lderg DLDH_AZOVI : 364- 369: thpei Agv-Gk-T eqalk DLDH_BACST : 256- 260: tvtye An--Ge-T ktida DLDH_BACST : 429- 435: aelgl AieaGm-T aedia DLDH_BACSU : 360- 365: sepel Asv-Gy-T eaqak DLDH_BACSU : 430- 436: selsl AiegGm-T aedia DLDH_BACSU : 430- 436: selsl Aie-GgmT aedia DLDH_ECOLI : 25- 31: aafrc Adl-GleT viver DLDH_ECOLI : 357- 362: tepev Awv-Gl-T ekeak DLDH_ECOLI : 392- 396: iasdc Ad--Gm-T klifd DLDH_HAEIN : 25- 31: aafrc Adl-GleT viver DLDH_HAEIN : 357- 362: tepev Awv-Gk-T ekeck DLDH_HALVO : 27- 34: vaair AaqnGidT tlvek DLDH_HALVO : 28- 34: aaira Aqn-GidT tlvek DLDH_HALVO : 41- 45: lvekd Ay--Gg-T clnyg DLDH_HALVO : 372- 378: mtead AeeaGf-T pvvgq DLDH_HALVO : 433- 439: aelaf AiemGa-T ledva DLDH_HUMAN : 60- 67: vaaik AaqlGfkT vciek DLDH_HUMAN : 61- 67: aaika Aql-GfkT vciek DLDH_HUMAN : 167- 171: vtatk Ad--Gg-T qvidt DLDH_PEA : 56- 63: vaaik AaqlGfkT tciek DLDH_PEA : 57- 63: aaika Aql-GfkT tciek DLDH_PEA : 71- 75: iekrg Al--Gg-T clnvg DLDH_PEA : 290- 295: tveps Ag--GeqT iiead DLDH_PEA : 393- 398: tnpev Asv-Gk-T eeqvk DLDH_PIG : 60- 67: vaaik AaqlGfkT vciek DLDH_PIG : 61- 67: aaika Aql-GfkT vciek DLDH_PIG : 167- 171: vtatk Ad--Gs-T evint DLDH_PSEFL : 22- 29: vaair AaqlGlkT aciek DLDH_PSEFL : 23- 29: aaira Aql-GlkT aciek DLDH_PSEFL : 43- 47: kegkv Al--Gg-T clnvg DLDH_PSEFL : 80- 84: vhgie Ak--Gv-T idvpa DLDH_PSEFL : 111- 115: atlfk An--Gv-T sfegh DLDH_PSEFL : 287- 293: ttdll AadsGv-T lderg DLDH_PSEFL : 288- 293: tdlla Ads-Gv-T lderg DLDH_PSEFL : 363- 368: thpei Awv-Gk-T eqtlk DLDH_TRYBB : 30- 37: vaaik AaqlGlkT acvek DLDH_TRYBB : 31- 37: aaika Aql-GlkT acvek DLDH_TRYBB : 45- 49: vekrg Al--Gg-T clnvg DLDH_TRYBB : 371- 376: tmpev Asv-Gk-T eeelk DLDH_YEAST : 45- 52: vaaik AaqlGfnT acvek DLDH_YEAST : 46- 52: aaika Aql-GfnT acvek DLDH_YEAST : 391- 396: shpev Awv-Gk-T eeqlk GSHR_ARATH : 128- 134: issdt AggvGg-T cvlrg GSHR_ARATH : 393- 398: vpsiw Av--GdvT drinl GSHR_ARATH : 512- 518: qgfgv AvkaGl-T kadfd GSHR_CAEEL : 181- 186: pnipg Ael-Gi-T sddlf GSHR_CAEEL : 194- 200: dlftl AsvpGk-T livgg GSHR_ECOLI : 35- 41: calie AkelGg-T cvnvg GSHR_ECOLI : 274- 279: ninle Aa--GvkT nekgy GSHR_ECOLI : 300- 305: iegiy Av--GdnT gavel GSHR_ECOLI : 422- 428: qgfav AlkmGa-T kkdfd GSHR_HAEIN : 35- 41: caiie AkhlGg-T cvnvg GSHR_HAEIN : 243- 248: eivkn Ad--GslT vrcdg GSHR_HAEIN : 428- 434: qgfav AikmGa-T kadfd GSHR_HUMAN : 171- 176: sqipg Asl-Gi-T sdgff GSHR_HUMAN : 208- 213: agils Al--GskT slmir GSHR_HUMAN : 450- 456: qgfav AvkmGa-T kadfd GSHR_PEA : 379- 384: vpsiw Ai--GdaT nrvnl GSHR_PSEAE : 419- 425: qgiav AmkaGa-T kqafd GSHR_SPISP : 40- 44: dallc At--Gr-T tqsni GSHR_SPISP : 40- 45: dallc At--GrtT qsnif GSHR_SPISP : 51- 56: qsnif Av--GdcT dr GSHR_YEAST : 26- 33: asarr AasyGakT llvea GSHR_YEAST : 27- 33: sarra Asy-GakT llvea GSHR_YEAST : 38- 44: tllve AkalGg-T cvnvg GSHR_YEAST : 40- 44: lveak Al--Gg-T cvnvg GSHR_YEAST : 439- 445: qgfgv AikmGa-T kadfd MERA_BACSR : 518- 523: tspsi Atv-Gl-T eqqak MERA_BACSR : 588- 594: yaatl AvkfGl-T vgdlr MERA_PSEAE : 360- 364: dkllv At--Gr-T pntrs MERA_PSEAE : 374- 378: slald Aa--Gv-T vnaqg MERA_PSEAE : 400- 405: npniy Aa--GdcT dqpqf MERA_PSEAE : 457- 464: yseae AhhdGieT dsrtl MERA_SERMA : 356- 363: yseae AhhdGieT dsrtl MERA_SHIFL : 377- 381: klald At--Gv-T ltpqg MERA_SHIFL : 403- 408: vehiy Aa--GdcT dqpqf MERA_SHIFL : 460- 467: yseae AhhdGikT dsrtl MERA_STAAU : 385- 390: nnriy Aa--GdvT lgpqf MERA_STAAU : 434- 439: tnpsi Atv-Gl-T eqqak MERA_STAAU : 504- 510: yaatl AvqfGl-T iedlt MERA_STRLI : 86- 93: aldfp AlisGkdT lvgql MERA_STRLI : 130- 136: pmlev AlndGg-T atvea MERA_STRLI : 312- 317: npriw Aa--GdvT chpdf MERA_STRLI : 361- 366: tspai Asv-Gl-T eaqlt MERA_STRLI : 431- 437: taaty AitaGl-T vdqla MERA_THIFE : 10- 15: aptel Ait-Gm-T cdgca MERA_THIFE : 386- 391: spniy Aa--GdcT dqpqf MERA_THIFE : 442- 449: gysae AhrdGieT dsrmt TYTR_CRIFA : 46- 51: gpphy Aal-Gg-T cvnvg TYTR_CRIFA : 47- 51: pphya Al--Gg-T cvnvg TYTR_CRIFA : 115- 121: yegmf AdteGl-T fhqgf TYTR_CRIFA : 324- 329: vdniy Ai--GdvT drvml TYTR_LEIDO : 47- 51: ppalv Al--Gg-T cvnvg TYTR_LEIDO : 323- 328: vdniy Ai--GdvT nrvml TYTR_TRYBB : 46- 51: gpphy Aal-Gg-T cvnvg TYTR_TRYBB : 47- 51: pphya Al--Gg-T cvnvg TYTR_TRYBB : 324- 329: vpniy Ai--GdiT drlml TYTR_TRYCO : 46- 51: gppff Aal-Gg-T cvnvg TYTR_TRYCO : 47- 51: ppffa Al--Gg-T cvnvg TYTR_TRYCO : 324- 329: vpniy Ai--GdvT griml TYTR_TRYCR : 48- 52: ppffs Al--Gg-T cvnvg TYTR_TRYCR : 324- 329: vsniy Ai--GdvT nrvml M 13: 11.0102 133( 37) I-x(1,3)-A-x(0,1)-G Occurences: 133(37) DLD1_PSEPU : 23- 26: gyvaa Ir--A-G qlgip DLD1_PSEPU : 304- 309: hnvwa IgdvA-G epmla DLD1_PSEPU : 327- 330: emvae Ii--A-G karrf DLD2_PSEPU : 9- 12: fdvvv Ig--A-G pggyv DLD2_PSEPU : 147- 151: eaenv Il--AsG srpid DLD2_PSEPU : 186- 189: krlgv Ig--A-G vigle DLD2_PSEPU : 272- 276: tfdkl Iv--AvG rrpvt DLD3_PSEPU : 20- 23: gynaa Ir--A-G qlglt DLD3_PSEPU : 140- 145: lqakd Ivi-AtG septp DLD3_PSEPU : 180- 183: khlvv Ig--A-G vigle DLD3_PSEPU : 332- 337: eavac IeriA-G kphev DLDH_ACHLA : 136- 140: ktknv Ii--AtG ssavv DLDH_AZOVI : 8- 13: qkfdv IvigA-G pggyv DLDH_AZOVI : 10- 13: fdviv Ig--A-G pggyv DLDH_AZOVI : 110- 114: gvasl Ik--AnG vtlfe DLDH_AZOVI : 148- 152: dtenv Il--AsG skpve DLDH_AZOVI : 187- 190: gklgv Ig--A-G vigle DLDH_AZOVI : 274- 278: afdkl Iv--AvG rrpvt DLDH_BACST : 144- 148: tfkna Ii--AtG srpie DLDH_BACST : 204- 209: gtkvt IlegA-G eilsg DLDH_BACST : 309- 313: tsvpn If--AiG divpg DLDH_BACST : 430- 433: elgla Ie--A-G mtaed DLDH_BACSU : 15- 18: tdtlv Ig--A-G pggyv DLDH_BACSU : 59- 62: pskal In--A-G hryen DLDH_BACSU : 144- 148: tfkna Ii--AtG srpie DLDH_BACSU : 310- 314: tnvpn Iy--AiG diieg DLDH_ECOLI : 141- 145: nfdna Iia-A-G srpiq DLDH_ECOLI : 141- 145: nfdna Ii--AaG srpiq DLDH_ECOLI : 142- 145: fdnai Ia--A-G srpiq DLDH_ECOLI : 307- 311: tnvph If--AiG divgq DLDH_HAEIN : 142- 146: kfdna Iia-A-G srpvq DLDH_HAEIN : 142- 146: kfdna Ii--AaG srpvq DLDH_HAEIN : 143- 146: fdnai Ia--A-G srpvq DLDH_HAEIN : 279- 282: pngkl Id--A-G kagve DLDH_HAEIN : 307- 311: tnvph Iy--AiG divgq DLDH_HALVO : 14- 17: tellv Ig--A-G pggyv DLDH_HALVO : 145- 149: efehc Ii--AtG srviq DLDH_HALVO : 286- 290: tdtmd Ien-A-G leadd DLDH_HALVO : 312- 316: tdveh Iy--AvG dvved DLDH_HUMAN : 179- 184: idtkn Ili-AtG sevtp DLDH_HUMAN : 219- 222: ekmvv Ig--A-G vigve DLDH_HUMAN : 293- 298: kidvs Iea-AsG gkaev DLDH_HUMAN : 350- 354: tkipn Iy--AiG dvvag DLDH_PEA : 174- 179: vkgkh Iii-AtG sdvks DLDH_PEA : 175- 179: kgkhi Ii--AtG sdvks DLDH_PEA : 214- 217: kklvv Ig--A-G yigle DLDH_PEA : 425- 430: sraka Idn-AeG lvkii DLDH_PIG : 179- 184: intkn Ili-AtG sevtp DLDH_PIG : 219- 222: ekmvv Ig--A-G vigve DLDH_PIG : 293- 298: nidvs Iea-AsG gkaev DLDH_PIG : 350- 354: tkipn Iy--AiG dvvag DLDH_PIG : 456- 461: lgahi IgpgA-G emine DLDH_PSEFL : 9- 12: fdvvv Ig--A-G pggyv DLDH_PSEFL : 78- 82: fkvhg Ie--AkG vtidv DLDH_PSEFL : 147- 151: eaenv Ii--AsG srpve DLDH_PSEFL : 186- 189: kklgv Ig--A-G vigle DLDH_PSEFL : 273- 277: tfdkl Iv--AvG rrpvt DLDH_TRYBB : 150- 154: eaknt Ii--AtG septa DLDH_TRYBB : 347- 350: vacae Il--A-G rpghv DLDH_TRYBB : 426- 432: ilgvh IvcsAaG eliag DLDH_YEAST : 170- 175: ldvkn Iiv-AtG sevtp DLDH_YEAST : 171- 175: dvkni Iv--AtG sevtp DLDH_YEAST : 447- 452: lgahi IgpnA-G emiae DLDH_YEAST : 455- 459: nagem Iae-A-G laley GSHR_ARATH : 93- 96: fdlft Ig--A-G sggvr GSHR_ARATH : 228- 233: yttrn Ili-AvG grpfi GSHR_ARATH : 327- 331: espea Iik-A-G dgsfs GSHR_ARATH : 328- 331: speai Ik--A-G dgsfs GSHR_ARATH : 391- 395: tsvps Iw--AvG dvtdr GSHR_CAEEL : 24- 29: nkfdl IvigA-G sggls GSHR_CAEEL : 26- 29: fdliv Ig--A-G sggls GSHR_CAEEL : 287- 291: eydtv Iwa-A-G rvpnl GSHR_CAEEL : 287- 291: eydtv Iw--AaG rvpnl GSHR_ECOLI : 135- 140: itadh Ili-AtG grpsh GSHR_ECOLI : 258- 262: tvdcl Iw--AiG repan GSHR_ECOLI : 270- 276: pandn InleAaG vktne GSHR_ECOLI : 298- 302: tnieg Iy--AvG dntga GSHR_HAEIN : 140- 145: vtadh Ili-AtG grpyr GSHR_HAEIN : 178- 181: kraav Ig--A-G yiave GSHR_HAEIN : 239- 245: stpse IvknAdG sltvr GSHR_HAEIN : 263- 267: tvdcv Iwa-A-G rvptt GSHR_HAEIN : 263- 267: tvdcv Iw--AaG rvptt GSHR_HAEIN : 303- 307: tnvkg Iy--AvG diien GSHR_HUMAN : 152- 157: ytaph Ili-AtG gmpst GSHR_HUMAN : 192- 196: pgrsv Ivg-A-G yiave GSHR_HUMAN : 205- 210: vemag Ils-AlG sktsl GSHR_HUMAN : 326- 330: tnvkg Iy--AvG dvcgk GSHR_HUMAN : 343- 346: ltpva Ia--A-G rklah GSHR_PEA : 79- 82: fdlft Ig--A-G sggvr GSHR_PEA : 313- 319: espva ItkaAdG slslk GSHR_PEA : 336- 341: egfsh Imf-AtG rspnt GSHR_PEA : 377- 381: tsvps Iw--AiG datnr GSHR_PEA : 499- 502: gfavg Ik--A-G ltkad GSHR_PSEAE : 10- 13: fdlfv Ig--A-G sggvr GSHR_PSEAE : 134- 139: fsakh Ilv-AtG gwpqv GSHR_PSEAE : 233- 239: sdiar IdkqAdG slaat GSHR_PSEAE : 297- 301: tseps Il--AlG dvigr GSHR_SPISP : 49- 53: ttqsn If--AvG dctdr GSHR_YEAST : 148- 153: ysanh Ilv-AtG gkaif GSHR_YEAST : 194- 198: agyig Iel-A-G vfhgl GSHR_YEAST : 330- 333: ltpva Ia--A-G rklsn GSHR_YEAST : 410- 414: ptryk Ivc-A-G pnekv MERA_BACSR : 467- 471: ttnsr Iys-A-G dvtpg MERA_PSEAE : 398- 402: tsnpn Iya-A-G dctdq MERA_PSEAE : 398- 402: tsnpn Iy--AaG dctdq MERA_SERMA : 32- 38: gvqsa IvsyAkG aaqla MERA_SHIFL : 401- 405: tsveh Iya-A-G dctdq MERA_SHIFL : 401- 405: tsveh Iy--AaG dctdq MERA_STAAU : 59- 63: kakqn Isa-A-G yqpge MERA_STAAU : 59- 63: kakqn Is--AaG yqpge MERA_STAAU : 383- 387: tsnnr Iya-A-G dvtlg MERA_STAAU : 383- 387: tsnnr Iy--AaG dvtlg MERA_STRLI : 13- 18: ydlai IgsgA-G afaaa MERA_STRLI : 220- 223: reepe Is--A-G ienif MERA_STRLI : 310- 314: tdnpr Iwa-A-G dvtch MERA_STRLI : 310- 314: tdnpr Iw--AaG dvtch MERA_STRLI : 432- 435: aatya It--A-G ltvdq MERA_THIFE : 284- 288: gshvt Il--ArG tlflr MERA_THIFE : 365- 369: aagva In--AqG aivid MERA_THIFE : 384- 388: tnspn Iya-A-G dctdq MERA_THIFE : 384- 388: tnspn Iy--AaG dctdq TYTR_CRIFA : 10- 13: ydlvv Ig--A-G sggle TYTR_CRIFA : 73- 78: nymdt IresA-G fgwel TYTR_CRIFA : 156- 161: ldtey Ill-AtG swpqh TYTR_CRIFA : 201- 205: ggyis Ief-A-G ifnay TYTR_CRIFA : 322- 326: tnvdn Iy--AiG dvtdr TYTR_LEIDO : 156- 161: ldtey Ili-AtG swptr TYTR_LEIDO : 321- 325: tsvdn Iy--AiG dvtnr TYTR_TRYBB : 10- 13: fdlvv Ig--A-G sggle TYTR_TRYBB : 156- 161: lqadh Ill-AtG swpqm TYTR_TRYBB : 322- 326: tnvpn Iy--AiG ditdr TYTR_TRYBB : 437- 442: dgape Iiq-AvG vclrl TYTR_TRYBB : 438- 442: gapei Iq--AvG vclrl TYTR_TRYCO : 9- 13: afdlv Iig-A-G sggle TYTR_TRYCO : 10- 13: fdlvi Ig--A-G sggle TYTR_TRYCO : 156- 161: lqaeh Iii-AtG swpqm TYTR_TRYCO : 157- 161: qaehi Ii--AtG swpqm TYTR_TRYCO : 322- 326: tnvpn Iy--AiG dvtgr TYTR_TRYCO : 437- 442: dsspe Iiq-AvG icmkl TYTR_TRYCO : 438- 442: sspei Iq--AvG icmkl TYTR_TRYCR : 11- 14: fdlvv Ig--A-G sggle TYTR_TRYCR : 157- 162: leten Ill-AsG swphm TYTR_TRYCR : 322- 326: tnvsn Iy--AiG dvtnr N 14: 11.0102 82( 37) G-x(0,2)-T-x(2,3)-N Occurences: 82(37) DLD1_PSEPU : 41- 46: egqal Gg-Tcl-N igcip DLD1_PSEPU : 42- 46: gqalg G--Tcl-N igcip DLD2_PSEPU : 45- 50: gklal Gg-Tcl-N vgcip DLD2_PSEPU : 46- 50: klalg G--Tcl-N vgcip DLD3_PSEPU : 39- 44: grstl Gg-Tcl-N vgcmp DLD3_PSEPU : 40- 44: rstlg G--Tcl-N vgcmp DLD3_PSEPU : 153- 158: ptplp Gv-Tid-N qriid DLDH_ACHLA : 266- 270: ilmsv G--Tra-N skgle DLDH_AZOVI : 46- 51: gktal Gg-Tcl-N vgcip DLDH_AZOVI : 47- 51: ktalg G--Tcl-N vgcip DLDH_AZOVI : 247- 252: garvt G--TevkN kqvtv DLDH_BACST : 192- 197: igiel G--TayaN fgtkv DLDH_BACSU : 75- 80: hsddm Gi-Tae-N vtvdf DLDH_BACSU : 192- 197: igtel G--TayaN fgtel DLDH_ECOLI : 116- 122: vvngl GkfTga-N tleve DLDH_ECOLI : 131- 136: vegen Gk-Tvi-N fdnai DLDH_ECOLI : 460- 467: aevfe GsiTdlpN pkakk DLDH_HAEIN : 191- 195: iglem G--Tvy-N algse DLDH_HAEIN : 460- 467: aevfe GsiTdlpN akake DLDH_HALVO : 43- 48: ekday Gg-Tcl-N ygcip DLDH_HALVO : 44- 48: kdayg G--Tcl-N ygcip DLDH_HUMAN : 77- 82: knetl Gg-Tcl-N vgcip DLDH_HUMAN : 78- 82: netlg G--Tcl-N vgcip DLDH_HUMAN : 154- 160: hvngy GkiTgk-N qvtat DLDH_PEA : 73- 78: krgal Gg-Tcl-N vgcip DLDH_PEA : 74- 78: rgalg G--Tcl-N vgcip DLDH_PIG : 77- 82: knetl Gg-Tcl-N vgcip DLDH_PIG : 78- 82: netlg G--Tcl-N vgcip DLDH_PIG : 154- 160: rvngy GkiTgk-N qvtat DLDH_PIG : 169- 175: atkad Gs-TeviN tknil DLDH_PSEFL : 45- 50: gkval Gg-Tcl-N vgcip DLDH_PSEFL : 46- 50: kvalg G--Tcl-N vgcip DLDH_TRYBB : 47- 52: krgal Gg-Tcl-N vgcip DLDH_TRYBB : 48- 52: rgalg G--Tcl-N vgcip DLDH_YEAST : 62- 67: krgkl Gg-Tcl-N vgcip DLDH_YEAST : 63- 67: rgklg G--Tcl-N vgcip GSHR_ARATH : 395- 402: siwav GdvTdriN ltpva GSHR_CAEEL : 64- 69: hswgi Gg-Tca-N vgcip GSHR_CAEEL : 65- 69: swgig G--Tca-N vgcip GSHR_CAEEL : 150- 154: kivit G--Tdk-N ktknf GSHR_ECOLI : 39- 44: eakel Gg-Tcv-N vgcvp GSHR_ECOLI : 40- 44: akelg G--Tcv-N vgcvp GSHR_ECOLI : 71- 77: ygpdy GfdTti-N kfnwe GSHR_HAEIN : 39- 44: eakhl Gg-Tcv-N vgcvp GSHR_HAEIN : 40- 44: akhlg G--Tcv-N vgcvp GSHR_HUMAN : 55- 60: eshkl Gg-Tcv-N vgcvp GSHR_HUMAN : 56- 60: shklg G--Tcv-N vgcvp GSHR_PEA : 381- 388: siwai GdaTnrvN ltpva GSHR_PSEAE : 39- 44: esryl Gg-Tcv-N vgcvp GSHR_PSEAE : 40- 44: srylg G--Tcv-N vgcvp GSHR_SPISP : 42- 48: llcat GrtTqs-N ifavg GSHR_SPISP : 42- 48: llcat Gr-TtqsN ifavg GSHR_YEAST : 42- 47: eakal Gg-Tcv-N vgcvp GSHR_YEAST : 43- 47: akalg G--Tcv-N vgcvp MERA_BACSR : 204- 209: ergtv Gg-Tcv-N vgcvp MERA_BACSR : 205- 209: rgtvg G--Tcv-N vgcvp MERA_BACSR : 235- 242: nnpfv GlhTsasN vdlap MERA_PSEAE : 133- 138: ergti Gg-Tcv-N vgcvp MERA_PSEAE : 134- 138: rgtig G--Tcv-N vgcvp MERA_PSEAE : 390- 397: ividq GmrTsnpN iyaag MERA_SERMA : 133- 138: ergti Gg-Tcv-N vgcvp MERA_SERMA : 134- 138: rgtig G--Tcv-N vgcvp MERA_SHIFL : 132- 137: ergti Gg-Tcv-N vgcvp MERA_SHIFL : 133- 137: rgtig G--Tcv-N vgcvp MERA_STAAU : 120- 125: ergtv Gg-Tcv-N igcvp MERA_STAAU : 121- 125: rgtvg G--Tcv-N igcvp MERA_STAAU : 425- 430: lrfvp Gv-Tft-N psiat MERA_STRLI : 42- 47: ergtt Gg-Tcv-N vgcvp MERA_STRLI : 43- 47: rgttg G--Tcv-N vgcvp MERA_THIFE : 119- 124: ersti Gg-Tcv-N igcvp MERA_THIFE : 120- 124: rstig G--Tcv-N igcvp MERA_THIFE : 376- 383: ividq GmrTnspN iyaag TYTR_CRIFA : 49- 54: hyaal Gg-Tcv-N vgcvp TYTR_CRIFA : 50- 54: yaalg G--Tcv-N vgcvp TYTR_LEIDO : 49- 54: alval Gg-Tcv-N vgcvp TYTR_LEIDO : 50- 54: lvalg G--Tcv-N vgcvp TYTR_LEIDO : 299- 305: qldka GvrTgk-N gavqv TYTR_TRYBB : 49- 54: hyaal Gg-Tcv-N vgcvp TYTR_TRYBB : 50- 54: yaalg G--Tcv-N vgcvp TYTR_TRYCO : 49- 54: ffaal Gg-Tcv-N vgcvp TYTR_TRYCO : 50- 54: faalg G--Tcv-N vgcvp TYTR_TRYCR : 50- 55: ffsal Gg-Tcv-N vgcvp TYTR_TRYCR : 51- 55: fsalg G--Tcv-N vgcvp O 15: 11.0102 85( 37) L-x(0,2)-T-x(0,1)-G Occurences: 85(37) DLD1_PSEPU : 99- 102: givdr Lt-T-G vaall DLD1_PSEPU : 99- 102: givdr L--TtG vaall DLD1_PSEPU : 140- 144: qcehl LlaT-G sssve DLD1_PSEPU : 141- 144: cehll La-T-G sssve DLD2_PSEPU : 101- 103: givkn L--T-G gvatl DLD2_PSEPU : 101- 104: givkn L--TgG vatlf DLD3_PSEPU : 95- 98: esvtg L--TkG ieylf DLD3_PSEPU : 357- 361: ytrpe La-TvG kteeq DLDH_ACHLA : 95- 98: gvvkq L--TnG vafll DLDH_AZOVI : 102- 104: qivrn L--T-G gvasl DLDH_AZOVI : 102- 105: qivrn L--TgG vasli DLDH_BACST : 99- 101: svvkk L--T-G gvegl DLDH_BACST : 99- 102: svvkk L--TgG vegll DLDH_BACST : 164- 168: fsnri LdsT-G alnlg DLDH_BACST : 269- 273: dadyv Lv-TvG rrpnt DLDH_BACST : 391- 396: grala LndTdG flklv DLDH_BACSU : 99- 101: svvnk L--T-G gvagl DLDH_BACSU : 99- 102: svvnk L--TgG vagll DLDH_BACSU : 164- 168: yserv LnsT-G alalk DLDH_BACSU : 270- 274: dadyv Li-TvG rrpnt DLDH_BACSU : 392- 397: grals LneTdG fmkli DLDH_ECOLI : 96- 98: kvinq L--T-G glagm DLDH_ECOLI : 96- 99: kvinq L--TgG lagma DLDH_HAEIN : 96- 98: avvak L--T-G glagm DLDH_HAEIN : 96- 99: avvak L--TgG lagma DLDH_HALVO : 57- 60: ipska Li-T-G anlah DLDH_HALVO : 97- 99: gvvdq L--T-G gvekl DLDH_HALVO : 97- 100: gvvdq L--TgG veklc DLDH_HUMAN : 134- 136: tavka L--T-G giahl DLDH_HUMAN : 134- 137: tavka L--TgG iahlf DLDH_HUMAN : 180- 184: dtkni LiaT-G sevtp DLDH_PEA : 129- 132: kavsn L--TrG ieglf DLDH_PIG : 134- 136: navka L--T-G giahl DLDH_PIG : 134- 137: navka L--TgG iahlf DLDH_PIG : 180- 184: ntkni LiaT-G sevtp DLDH_PSEFL : 101- 103: nivkn L--T-G giatl DLDH_PSEFL : 101- 104: nivkn L--TgG iatlf DLDH_TRYBB : 104- 107: ksvng L--TsG veyll DLDH_TRYBB : 171- 175: dekvv LssT-G alalq DLDH_YEAST : 119- 121: davkq L--T-G giell DLDH_YEAST : 119- 122: davkq L--TgG iellf DLDH_YEAST : 368- 371: aavem Lk-T-G hghvn GSHR_ARATH : 90- 94: hydfd Lf-TiG agsgg GSHR_ARATH : 188- 190: aelqr L--T-G iykni GSHR_CAEEL : 247- 251: fvmeh LktT-G vkvke GSHR_CAEEL : 247- 251: fvmeh Lk-TtG vkvke GSHR_CAEEL : 379- 383: ftple Ls-TvG lteee GSHR_ECOLI : 136- 140: tadhi LiaT-G grpsh GSHR_ECOLI : 136- 141: tadhi LiaTgG rpshp GSHR_HAEIN : 141- 145: tadhi LiaT-G grpyr GSHR_HAEIN : 141- 146: tadhi LiaTgG rpyrp GSHR_HUMAN : 153- 157: taphi LiaT-G gmpst GSHR_HUMAN : 153- 158: taphi LiaTgG mpstp GSHR_PEA : 76- 80: qydfd Lf-TiG agsgg GSHR_PEA : 174- 176: aelqr L--T-G iyknt GSHR_PSEAE : 135- 139: sakhi LvaT-G gwpqv GSHR_PSEAE : 135- 140: sakhi LvaTgG wpqvp GSHR_SPISP : 22- 26: gcvpk LtlT-G ddtep GSHR_SPISP : 24- 26: vpklt L--T-G ddtep GSHR_SPISP : 38- 42: ivdal LcaT-G rttqs GSHR_YEAST : 149- 153: sanhi LvaT-G gkaif GSHR_YEAST : 149- 154: sanhi LvaTgG kaifp GSHR_YEAST : 273- 278: ddvde LiwTiG rkshl MERA_BACSR : 301- 305: takrf LiaT-G assta MERA_BACSR : 392- 395: eqgin Lv-T-G atyer MERA_BACSR : 427- 431: eaeql LiaT-G rkpiq MERA_BACSR : 593- 596: avkfg L--TvG dlret MERA_PSEAE : 4- 8: mth LkiT-G mtcds MERA_PSEAE : 237- 241: mfdrc LvaT-G aspav MERA_PSEAE : 345- 350: dgefv LttThG elrad MERA_PSEAE : 358- 362: radkl LvaT-G rtpnt MERA_SERMA : 4- 8: mth LkiT-G mtcds MERA_SERMA : 237- 241: mfdrc LvaT-G aspam MERA_SHIFL : 4- 8: mst LkiT-G mtcds MERA_SHIFL : 236- 240: afdrc LiaT-G aspav MERA_SHIFL : 361- 365: radkl LvaT-G rapnt MERA_SHIFL : 375- 379: trkla LdaT-G vtltp MERA_STAAU : 217- 221: tsksf LiaT-G aspav MERA_STAAU : 308- 311: eqgln Li-T-G vtyqk MERA_STAAU : 343- 347: eadqv LvaT-G rkpnt MERA_STRLI : 145- 149: eaahy LiaT-G sapta MERA_STRLI : 255- 257: gilat L--T-G pdgdq MERA_STRLI : 270- 274: rashl LiaT-G rrsvt MERA_THIFE : 9- 13: napte LaiT-G mtcdg MERA_THIFE : 223- 227: mfdrc LvaT-G aspav MERA_THIFE : 331- 334: dgefv La-T-G hgelr MERA_THIFE : 344- 348: radkl LvaT-G rapnt TYTR_CRIFA : 62- 66: cvpkk LmvT-G anymd TYTR_CRIFA : 157- 161: dteyi LlaT-G swpqh TYTR_CRIFA : 158- 161: teyil La-T-G swpqh TYTR_LEIDO : 62- 66: cvpkk LmvT-G aqymd TYTR_LEIDO : 157- 161: dteyi LiaT-G swptr TYTR_TRYBB : 62- 66: cvpkk LmvT-G aqymd TYTR_TRYBB : 157- 161: qadhi LlaT-G swpqm TYTR_TRYBB : 158- 161: adhil La-T-G swpqm TYTR_TRYBB : 192- 195: pprrv L--TvG ggfis TYTR_TRYBB : 260- 264: pakvs Ln-TdG skhvt TYTR_TRYCO : 62- 66: cvpkk LmvT-G aqymd TYTR_TRYCO : 192- 195: pprrv L--TvG ggfis TYTR_TRYCO : 288- 292: maigr LprT-G ylqlq TYTR_TRYCO : 296- 300: tgylq Lq-TvG vnltd TYTR_TRYCR : 63- 67: cvpkk LmvT-G aqyme TYTR_TRYCR : 193- 196: pprrv L--TvG ggfis P 16: 11.0102 93( 37) L-x(2,3)-A-x(1,3)-G Occurences: 93(37) DLD1_PSEPU : 139- 144: iqceh Lll-At--G sssve DLD1_PSEPU : 226- 233: eslkk Lgi-AlhlG hsveg DLD1_PSEPU : 313- 321: agepm LahrAmaqG emvae DLD1_PSEPU : 402- 408: dnhli LgwqAv--G vavse DLD2_PSEPU : 271- 276: itfdk Liv-Av--G rrpvt DLD2_PSEPU : 284- 290: pvttd Lla-Ads-G vtide DLD2_PSEPU : 324- 332: yagmm LahkAseeG imvve DLD3_PSEPU : 27- 34: agqlg Ltv-AcveG rstlg DLD3_PSEPU : 59- 65: lhase LyeaAs--G defah DLD3_PSEPU : 59- 65: lhase Lye-Aas-G defah DLD3_PSEPU : 252- 257: gvslv Lep-Aa--G gtaes DLD3_PSEPU : 252- 258: gvslv LepaAg--G taesl DLD3_PSEPU : 252- 258: gvslv Lep-Aag-G taesl DLDH_ACHLA : 311- 319: ngkfm LahvAeheG itavq DLDH_AZOVI : 109- 114: ggvas Lik-An--G vtlfe DLDH_AZOVI : 240- 247: qglki Llg-ArvtG tevkn DLDH_AZOVI : 273- 278: qafdk Liv-Av--G rrpvt DLDH_AZOVI : 286- 292: pvttd Lla-Ads-G vtlde DLDH_AZOVI : 326- 334: vrgam LahkAseeG vvvae DLDH_BACST : 13- 20: ietet LvvgAgp-G gyvaa DLDH_BACST : 13- 21: ietet LvvgAgpgG yvaai DLDH_BACST : 321- 329: vpgpa LahkAsyeG kvaae DLDH_BACST : 426- 433: dmiae Lgl-AieaG mtaed DLDH_BACSU : 13- 20: ietdt LvigAgp-G gyvaa DLDH_BACSU : 13- 21: ietdt LvigAgpgG yvaai DLDH_BACSU : 322- 330: iegpp LahkAsyeG kiaae DLDH_BACSU : 409- 417: rkedg LvigAqiaG asasd DLDH_BACSU : 427- 433: dmise Lsl-Aie-G gmtae DLDH_BACSU : 427- 434: dmise Lsl-AiegG mtaed DLDH_ECOLI : 100- 106: qltgg LagmAk--G rkvkv DLDH_HAEIN : 278- 285: vpngk Lid-AgkaG vevdd DLDH_HAEIN : 408- 414: dthrv Lgg-Aiv-G sngge DLDH_HALVO : 12- 19: tgtel LvigAgp-G gyvaa DLDH_HALVO : 12- 20: tgtel LvigAgpgG yvaai DLDH_HALVO : 104- 109: ggvek Lck-An--G vnlve DLDH_HALVO : 238- 244: gidmh LgegAt--G wreed DLDH_HALVO : 325- 333: edtpm LahvAskeG ivaae DLDH_HALVO : 430- 437: eliae Laf-AiemG atled DLDH_HUMAN : 362- 370: vagpm LahkAedeG iicve DLDH_PEA : 26- 34: rysfs LrsrAfasG sdend DLDH_PEA : 355- 363: ipgpm LahkAeedG vacve DLDH_PIG : 362- 370: vagpm LahkAedeG iicve DLDH_PSEFL : 108- 113: ggiat Lfk-An--G vtsfe DLDH_PSEFL : 272- 277: etfdk Liv-Av--G rrpvt DLDH_PSEFL : 285- 291: pvttd Lla-Ads-G vtlde DLDH_PSEFL : 325- 333: vrgam LahkAseeG vmvae DLDH_TRYBB : 333- 341: dkgpm LahkAedeG vacae DLDH_YEAST : 300- 305: leaev Llv-Av--G rrpyi DLDH_YEAST : 353- 361: tfgpm LahkAeeeG iaave GSHR_ARATH : 403- 411: tdrin LtpvAlmeG galak GSHR_CAEEL : 84- 91: nskfq Lkh-AdkyG wngid GSHR_CAEEL : 190- 198: itsdd LftlAsvpG ktliv GSHR_CAEEL : 341- 349: qdrqe LtplAiqsG kllad GSHR_ECOLI : 32- 39: gqkca Lie-AkelG gtcvn GSHR_ECOLI : 257- 262: etvdc Liw-Ai--G repan GSHR_ECOLI : 310- 318: tgave LtpvAvaaG rrlse GSHR_HAEIN : 20- 27: ggias LnraAsy-G kkcai GSHR_HAEIN : 20- 27: ggias Lnr-AasyG kkcai GSHR_HAEIN : 171- 179: falte LpkrAaviG agyia GSHR_HAEIN : 316- 324: engie LtpvAvaaG rrlse GSHR_HUMAN : 285- 290: pdvdc Llw-Ai--G rvpnt GSHR_HUMAN : 338- 346: cgkal LtpvAiaaG rklah GSHR_PEA : 389- 397: tnrvn LtpvAlmeG valak GSHR_PSEAE : 309- 317: igrvq LtpvAlaeG mavar GSHR_SPISP : 37- 42: livda Llc-At--G rttqs GSHR_YEAST : 34- 42: ygakt LlveAkalG gtcvn GSHR_YEAST : 35- 42: gaktl Lve-AkalG gtcvn GSHR_YEAST : 325- 333: vgkve LtpvAiaaG rklsn MERA_BACSR : 103- 110: hiava Len-AgakG ievdf MERA_BACSR : 426- 431: ieaeq Lli-At--G rkpiq MERA_BACSR : 439- 445: piqts LnlhAa--G vevgs MERA_BACSR : 606- 611: tmapy Ltm-Ae--G lklav MERA_PSEAE : 53- 59: tspda Lta-Ava-G lgyka MERA_PSEAE : 189- 196: arvde Lrh-AkyeG ilggn MERA_PSEAE : 357- 362: lradk Llv-At--G rtpnt MERA_PSEAE : 370- 376: pntrs LaldAa--G vtvna MERA_SERMA : 53- 59: tapda Lta-Ava-G lgyka MERA_SERMA : 99- 105: gaerp Lqv-Avi-G sggaa MERA_SERMA : 189- 196: arvee Lrh-AkyeG ildgn MERA_SHIFL : 53- 59: tspda Lta-Ava-G lgyra MERA_SHIFL : 98- 104: gssga Lhi-Avi-G sggaa MERA_SHIFL : 188- 195: arvde Lrh-AkyeG ilegn MERA_SHIFL : 348- 353: dgefv Ltt-Ah--G elrad MERA_SHIFL : 360- 365: lradk Llv-At--G rapnt MERA_SHIFL : 373- 379: pntrk LaldAt--G vtltp MERA_STAAU : 522- 527: sfapy Ltm-Ae--G lklaa MERA_STRLI : 82- 90: atepa LdfpAlisG kdtlv MERA_STRLI : 127- 134: adgpm Lev-AlndG gtatv MERA_STRLI : 269- 274: vrash Lli-At--G rrsvt MERA_THIFE : 85- 91: ndgqe Lhi-Avi-G tggaa MERA_THIFE : 175- 182: arvde Lrh-AkyeG ildgn MERA_THIFE : 343- 348: lradk Llv-At--G rapnt MERA_THIFE : 356- 362: pntrr LnleAa--G vaina TYTR_CRIFA : 334- 342: tdrvm LtpvAineG aafvd TYTR_LEIDO : 333- 341: tnrvm LtpvAineG acvll TYTR_TRYBB : 73- 80: qymdh LresAgf-G wefdg TYTR_TRYBB : 334- 342: tdrlm LtpvAineG aalvd TYTR_TRYCO : 73- 80: qymdq LresAgf-G wefda TYTR_TRYCO : 334- 342: tgrim LtpvAineG asvvd TYTR_TRYCR : 74- 81: qymeh LresAgf-G wefdr TYTR_TRYCR : 281- 287: kmdfd LvmmAi--G rsprt Q 17: 11.0102 119( 37) V-x(0,1)-A-x(2,4)-A Occurences: 119(37) DLD1_PSEPU : 20- 25: gpggy VaAir--A gqlgi DLD1_PSEPU : 20- 25: gpggy V-Aair-A gqlgi DLD1_PSEPU : 301- 308: tsmhn VwAigdvA gepml DLD1_PSEPU : 324- 329: aqgem V-Aeii-A gkarr DLD1_PSEPU : 369- 375: gldci V-AqfpfA angra DLD1_PSEPU : 431- 437: acled V-AgtihA hptlg DLD2_PSEPU : 17- 22: gpggy VaAik--A aqlgl DLD2_PSEPU : 17- 22: gpggy V-Aaik-A aqlgl DLD2_PSEPU : 17- 23: gpggy VaAika-A qlglk DLD2_PSEPU : 17- 23: gpggy V-AaikaA qlglk DLD2_PSEPU : 105- 111: nltgg V-AtlfkA nafts DLD2_PSEPU : 198- 204: lelgs VwArlg-A evtvl DLD3_PSEPU : 427- 433: igefc V-AmefsA saedi DLDH_ACHLA : 18- 23: gpggy VaAik--A aqyga DLDH_ACHLA : 18- 23: gpggy V-Aaik-A aqyga DLDH_ACHLA : 18- 24: gpggy VaAika-A qygak DLDH_ACHLA : 18- 24: gpggy V-AaikaA qygak DLDH_AZOVI : 18- 24: gpggy VaAiks-A qlglk DLDH_AZOVI : 18- 24: gpggy V-AaiksA qlglk DLDH_AZOVI : 106- 112: nltgg V-AslikA ngvtl DLDH_AZOVI : 199- 205: lelgs VwArlg-A evtvl DLDH_AZOVI : 224- 228: avdeq V-Ake--A qkilt DLDH_AZOVI : 336- 342: seegv VvAeri-A ghkaq DLDH_AZOVI : 337- 342: eegvv V-Aeri-A ghkaq DLDH_AZOVI : 448- 453: dlgmm VfAhp--A lseal DLDH_BACST : 23- 28: gpggy VaAir--A aqlgq DLDH_BACST : 23- 28: gpggy V-Aair-A aqlgq DLDH_BACST : 23- 29: gpggy VaAira-A qlgqk DLDH_BACST : 23- 29: gpggy V-AairaA qlgqk DLDH_BACST : 331- 335: syegk V-Aae--A iaghp DLDH_BACST : 331- 337: syegk VaAeai-A ghpsa DLDH_BACST : 331- 337: syegk V-AaeaiA ghpsa DLDH_BACST : 346- 350: savdy V-Aip--A vvfsd DLDH_BACSU : 23- 28: gpggy VaAir--A aqlgq DLDH_BACSU : 23- 28: gpggy V-Aair-A aqlgq DLDH_BACSU : 23- 29: gpggy VaAira-A qlgqk DLDH_BACSU : 23- 29: gpggy V-AairaA qlgqk DLDH_BACSU : 377- 384: egldi VaAkfpfA angra DLDH_ECOLI : 237- 242: mletk VtAve--A kedgi DLDH_ECOLI : 329- 335: vhegh VaAevi-A gkkhy DLDH_ECOLI : 329- 335: vhegh V-AaeviA gkkhy DLDH_HAEIN : 85- 91: ielde VrAgke-A vvakl DLDH_HAEIN : 238- 243: mletk VtAve--A kddgi DLDH_HAEIN : 329- 335: vhegh VaAevi-A gqkhy DLDH_HAEIN : 329- 335: vhegh V-AaeviA gqkhy DLDH_HAEIN : 375- 381: glnye V-AkfpwA asgra DLDH_HALVO : 22- 27: gpggy VaAir--A aqngi DLDH_HALVO : 22- 27: gpggy V-Aair-A aqngi DLDH_HALVO : 22- 28: gpggy VaAira-A qngid DLDH_HALVO : 22- 28: gpggy V-AairaA qngid DLDH_HALVO : 335- 341: skegi VaAehv-A gepva DLDH_HALVO : 335- 341: skegi V-AaehvA gepva DLDH_HALVO : 340- 346: vaaeh V-AgepvA fdsqa DLDH_HALVO : 345- 351: vagep V-AfdsqA vpaav DLDH_HUMAN : 55- 60: gpggy VaAik--A aqlgf DLDH_HUMAN : 55- 60: gpggy V-Aaik-A aqlgf DLDH_HUMAN : 55- 61: gpggy VaAika-A qlgfk DLDH_HUMAN : 55- 61: gpggy V-AaikaA qlgfk DLDH_HUMAN : 162- 167: tgknq VtAtk--A dggtq DLDH_HUMAN : 356- 363: yaigd VvAgpmlA hkaed DLDH_HUMAN : 357- 363: aigdv V-AgpmlA hkaed DLDH_PEA : 51- 56: gpggy VaAik--A aqlgf DLDH_PEA : 51- 56: gpggy V-Aaik-A aqlgf DLDH_PEA : 51- 57: gpggy VaAika-A qlgfk DLDH_PEA : 51- 57: gpggy V-AaikaA qlgfk DLDH_PIG : 55- 60: gpggy VaAik--A aqlgf DLDH_PIG : 55- 60: gpggy V-Aaik-A aqlgf DLDH_PIG : 55- 61: gpggy VaAika-A qlgfk DLDH_PIG : 55- 61: gpggy V-AaikaA qlgfk DLDH_PIG : 162- 167: tgknq VtAtk--A dgste DLDH_PIG : 356- 363: yaigd VvAgpmlA hkaed DLDH_PIG : 357- 363: aigdv V-AgpmlA hkaed DLDH_PSEFL : 17- 22: gpggy VaAir--A aqlgl DLDH_PSEFL : 17- 22: gpggy V-Aair-A aqlgl DLDH_PSEFL : 17- 23: gpggy VaAira-A qlglk DLDH_PSEFL : 17- 23: gpggy V-AairaA qlglk DLDH_PSEFL : 87- 92: gvtid VpAmv--A rkani DLDH_PSEFL : 91- 95: dvpam V-Ark--A nivkn DLDH_PSEFL : 198- 204: lelgs VwArlg-A evtvl DLDH_PSEFL : 336- 341: eegvm V-Aeri-A ghkaq DLDH_TRYBB : 25- 30: gpggy VaAik--A aqlgl DLDH_TRYBB : 25- 30: gpggy V-Aaik-A aqlgl DLDH_TRYBB : 25- 31: gpggy VaAika-A qlglk DLDH_TRYBB : 25- 31: gpggy V-AaikaA qlglk DLDH_TRYBB : 317- 322: hfetn V-Agvy-A igdvv DLDH_YEAST : 40- 45: gpagy VaAik--A aqlgf DLDH_YEAST : 40- 45: gpagy V-Aaik-A aqlgf DLDH_YEAST : 40- 46: gpagy VaAika-A qlgfn DLDH_YEAST : 40- 46: gpagy V-AaikaA qlgfn DLDH_YEAST : 105- 111: dikin V-AnfqkA kddav DLDH_YEAST : 471- 477: asaed V-ArvchA hptls GSHR_ARATH : 100- 106: agsgg VrAsrf-A tsfga GSHR_ARATH : 511- 515: iqgfg V-Avk--A gltka GSHR_ARATH : 513- 520: gfgva VkAgltkA dfdat GSHR_CAEEL : 46- 51: dlgan V-Alid-A veptp GSHR_CAEEL : 208- 213: vgggy V-Alec-A gflsa GSHR_ECOLI : 170- 175: alper V-Avvg-A gyiav GSHR_ECOLI : 173- 179: ervav VgAgyi-A velag GSHR_ECOLI : 313- 317: veltp V-Ava--A grrls GSHR_ECOLI : 421- 427: lqgfa V-AlkmgA tkkdf GSHR_ECOLI : 436- 442: dfdnt V-AihptA aeefv GSHR_HAEIN : 319- 323: ieltp V-Ava--A grrls GSHR_HAEIN : 427- 433: iqgfa V-AikmgA tkadf GSHR_HUMAN : 193- 199: grsvi VgAgyi-A vemag GSHR_HUMAN : 341- 345: alltp V-Aia--A grkla GSHR_HUMAN : 449- 455: lqgfa V-AvkmgA tkadf GSHR_PEA : 86- 92: agsgg VrAsrf-A snfga GSHR_PEA : 293- 298: eirdf V-Aenm-A lrgie GSHR_PEA : 311- 316: teesp V-Aitk-A adgsl GSHR_PEA : 311- 317: teesp V-AitkaA dgsls GSHR_PSEAE : 17- 23: agsgg VrAarf-A agfga GSHR_PSEAE : 17- 24: agsgg VrAarfaA gfgar GSHR_PSEAE : 418- 422: lqgia V-Amk--A gatkq GSHR_PSEAE : 418- 424: lqgia V-AmkagA tkqaf GSHR_SPISP : 34- 40: tepli VdAllc-A tgrtt GSHR_YEAST : 20- 26: ggsgg V-AsarrA asyga GSHR_YEAST : 150- 156: anhil V-AtggkA ifpen GSHR_YEAST : 328- 332: veltp V-Aia--A grkls GSHR_YEAST : 438- 444: lqgfg V-AikmgA tkadf MERA_BACSR : 101- 106: eehia V-Alen-A gakgi MERA_BACSR : 189- 193: saiea V-Aln--A kvami MERA_BACSR : 573- 578: vlgah VvAen--A gdviy MERA_BACSR : 574- 578: lgahv V-Aen--A gdviy MERA_PSEAE : 238- 242: fdrcl V-Atg--A spavp MERA_PSEAE : 280- 286: vigss VvAlel-A qafar MERA_PSEAE : 281- 286: igssv V-Alel-A qafar MERA_PSEAE : 316- 322: aigea VtAafr-A egiev MERA_PSEAE : 379- 384: aagvt VnAqg--A ividq MERA_PSEAE : 413- 417: pqfvy V-Aaa--A gtraa MERA_PSEAE : 501- 508: hrlig VqAvapeA geliq MERA_PSEAE : 504- 508: igvqa V-Ape--A geliq MERA_SERMA : 238- 242: fdrcl V-Atg--A spamp MERA_SERMA : 280- 286: vigss VvAlel-A qafar MERA_SERMA : 281- 286: igssv V-Alel-A qafar MERA_SERMA : 316- 322: sigea VtAafr-A egikv MERA_SERMA : 402- 407: ligvq VvApe--A geliq MERA_SERMA : 403- 407: igvqv V-Ape--A geliq MERA_SHIFL : 279- 285: vigss VvAlel-A qafar MERA_SHIFL : 280- 285: igssv V-Alel-A qafar MERA_SHIFL : 362- 367: adkll V-Atgr-A pntrk MERA_SHIFL : 416- 420: pqfvy V-Aaa--A gtraa MERA_SHIFL : 504- 511: grlig VqAvapeA geliq MERA_SHIFL : 507- 511: igvqa V-Ape--A geliq MERA_STAAU : 406- 410: yeggi V-Ann--A lglak MERA_STRLI : 333- 337: ahgtl V-Adn--A ldgae MERA_STRLI : 416- 421: llaah VlAeg--A gdvit MERA_THIFE : 224- 228: fdrcl V-Atg--A spavp MERA_THIFE : 266- 272: vigss VvAlel-A qafar MERA_THIFE : 267- 272: igssv V-Alel-A qafar MERA_THIFE : 345- 350: adkll V-Atgr-A pntrr MERA_THIFE : 363- 367: leaag V-Ain--A qgaiv MERA_THIFE : 399- 403: pqfvy V-Aaa--A gtraa MERA_THIFE : 487- 492: ligvq VvApe--A geliq MERA_THIFE : 488- 492: igvqv V-Ape--A geliq TYTR_CRIFA : 303- 308: kagve V-Akng-A ikvda TYTR_CRIFA : 337- 343: vmltp V-AinegA afvdt TYTR_CRIFA : 349- 356: afvdt VfAnkprA tdhtk TYTR_LEIDO : 336- 342: vmltp V-AinegA cvlle TYTR_LEIDO : 389- 393: knyet V-Avy--A ssftp TYTR_TRYBB : 337- 343: lmltp V-AinegA alvdt TYTR_TRYCO : 337- 343: imltp V-AinegA svvdt TYTR_TRYCR : 337- 342: vmltp V-Aine-A aalvd TYTR_TRYCR : 337- 343: vmltp V-AineaA alvdt R 18: 11.0102 120( 37) V-x(0,2)-A-x(3,4)-A Occurences: 120(37) DLD1_PSEPU : 20- 25: gpggy V--Aair-A gqlgi DLD1_PSEPU : 301- 308: tsmhn Vw-AigdvA gepml DLD1_PSEPU : 324- 329: aqgem V--Aeii-A gkarr DLD1_PSEPU : 369- 375: gldci V--AqfpfA angra DLD1_PSEPU : 431- 437: acled V--AgtihA hptlg DLD1_PSEPU : 445- 452: tlgea VqeAalr-A lghal DLD2_PSEPU : 17- 22: gpggy V--Aaik-A aqlgl DLD2_PSEPU : 17- 23: gpggy Va-Aika-A qlglk DLD2_PSEPU : 17- 23: gpggy V--AaikaA qlglk DLD2_PSEPU : 105- 111: nltgg V--AtlfkA nafts DLD2_PSEPU : 198- 204: lelgs Vw-Arlg-A evtvl DLD3_PSEPU : 238- 245: klgsk VtqAtas-A dgvsl DLD3_PSEPU : 427- 433: igefc V--AmefsA saedi DLDH_ACHLA : 18- 23: gpggy V--Aaik-A aqyga DLDH_ACHLA : 18- 24: gpggy Va-Aika-A qygak DLDH_ACHLA : 18- 24: gpggy V--AaikaA qygak DLDH_ACHLA : 135- 143: lktkn ViiAtgssA vvppi DLDH_AZOVI : 18- 24: gpggy Va-Aiks-A qlglk DLDH_AZOVI : 18- 24: gpggy V--AaiksA qlglk DLDH_AZOVI : 106- 112: nltgg V--AslikA ngvtl DLDH_AZOVI : 199- 205: lelgs Vw-Arlg-A evtvl DLDH_AZOVI : 335- 342: aseeg VvvAeri-A ghkaq DLDH_AZOVI : 336- 342: seegv Vv-Aeri-A ghkaq DLDH_AZOVI : 337- 342: eegvv V--Aeri-A ghkaq DLDH_BACST : 23- 28: gpggy V--Aair-A aqlgq DLDH_BACST : 23- 29: gpggy Va-Aira-A qlgqk DLDH_BACST : 23- 29: gpggy V--AairaA qlgqk DLDH_BACST : 235- 243: kgvev VtnAlakgA eered DLDH_BACST : 331- 337: syegk Va-Aeai-A ghpsa DLDH_BACST : 331- 337: syegk V--AaeaiA ghpsa DLDH_BACST : 375- 383: degid ViaAkfpfA angra DLDH_BACSU : 23- 28: gpggy V--Aair-A aqlgq DLDH_BACSU : 23- 29: gpggy Va-Aira-A qlgqk DLDH_BACSU : 23- 29: gpggy V--AairaA qlgqk DLDH_BACSU : 377- 384: egldi Va-AkfpfA angra DLDH_BACSU : 410- 418: kedgl VigAqiagA sasdm DLDH_ECOLI : 329- 335: vhegh Va-Aevi-A gkkhy DLDH_ECOLI : 329- 335: vhegh V--AaeviA gkkhy DLDH_HAEIN : 85- 91: ielde Vr-Agke-A vvakl DLDH_HAEIN : 329- 335: vhegh Va-Aevi-A gqkhy DLDH_HAEIN : 329- 335: vhegh V--AaeviA gqkhy DLDH_HAEIN : 375- 381: glnye V--AkfpwA asgra DLDH_HALVO : 22- 27: gpggy V--Aair-A aqngi DLDH_HALVO : 22- 28: gpggy Va-Aira-A qngid DLDH_HALVO : 22- 28: gpggy V--AairaA qngid DLDH_HALVO : 335- 341: skegi Va-Aehv-A gepva DLDH_HALVO : 335- 341: skegi V--AaehvA gepva DLDH_HALVO : 340- 346: vaaeh V--AgepvA fdsqa DLDH_HALVO : 345- 351: vagep V--AfdsqA vpaav DLDH_HALVO : 457- 464: tlaea VmeAaen-A lgqai DLDH_HUMAN : 55- 60: gpggy V--Aaik-A aqlgf DLDH_HUMAN : 55- 61: gpggy Va-Aika-A qlgfk DLDH_HUMAN : 55- 61: gpggy V--AaikaA qlgfk DLDH_HUMAN : 356- 363: yaigd Vv-AgpmlA hkaed DLDH_HUMAN : 357- 363: aigdv V--AgpmlA hkaed DLDH_PEA : 51- 56: gpggy V--Aaik-A aqlgf DLDH_PEA : 51- 57: gpggy Va-Aika-A qlgfk DLDH_PEA : 51- 57: gpggy V--AaikaA qlgfk DLDH_PIG : 55- 60: gpggy V--Aaik-A aqlgf DLDH_PIG : 55- 61: gpggy Va-Aika-A qlgfk DLDH_PIG : 55- 61: gpggy V--AaikaA qlgfk DLDH_PIG : 356- 363: yaigd Vv-AgpmlA hkaed DLDH_PIG : 357- 363: aigdv V--AgpmlA hkaed DLDH_PSEFL : 17- 22: gpggy V--Aair-A aqlgl DLDH_PSEFL : 17- 23: gpggy Va-Aira-A qlglk DLDH_PSEFL : 17- 23: gpggy V--AairaA qlglk DLDH_PSEFL : 198- 204: lelgs Vw-Arlg-A evtvl DLDH_PSEFL : 334- 341: aseeg VmvAeri-A ghkaq DLDH_PSEFL : 336- 341: eegvm V--Aeri-A ghkaq DLDH_TRYBB : 25- 30: gpggy V--Aaik-A aqlgl DLDH_TRYBB : 25- 31: gpggy Va-Aika-A qlglk DLDH_TRYBB : 25- 31: gpggy V--AaikaA qlglk DLDH_TRYBB : 212- 219: sdvtv VefAprc-A ptlds DLDH_TRYBB : 226- 233: tldsd VtdAlvg-A lkrng DLDH_TRYBB : 264- 271: altle VeqAggq-A etlhc DLDH_TRYBB : 317- 322: hfetn V--Agvy-A igdvv DLDH_TRYBB : 342- 349: aedeg VacAeil-A grpgh DLDH_YEAST : 40- 45: gpagy V--Aaik-A aqlgf DLDH_YEAST : 40- 46: gpagy Va-Aika-A qlgfn DLDH_YEAST : 40- 46: gpagy V--AaikaA qlgfn DLDH_YEAST : 105- 111: dikin V--AnfqkA kddav DLDH_YEAST : 471- 477: asaed V--ArvchA hptls GSHR_ARATH : 100- 106: agsgg Vr-Asrf-A tsfga GSHR_ARATH : 370- 377: lenvg VkmAkng-A ievde GSHR_ARATH : 513- 520: gfgva Vk-AgltkA dfdat GSHR_CAEEL : 46- 51: dlgan V--Alid-A veptp GSHR_CAEEL : 208- 213: vgggy V--Alec-A gflsa GSHR_ECOLI : 170- 175: alper V--Avvg-A gyiav GSHR_ECOLI : 172- 179: perva VvgAgyi-A velag GSHR_ECOLI : 173- 179: ervav Vg-Agyi-A velag GSHR_ECOLI : 421- 427: lqgfa V--AlkmgA tkkdf GSHR_ECOLI : 436- 442: dfdnt V--AihptA aeefv GSHR_HAEIN : 177- 184: pkraa VigAgyi-A velsg GSHR_HAEIN : 427- 433: iqgfa V--AikmgA tkadf GSHR_HUMAN : 193- 199: grsvi Vg-Agyi-A vemag GSHR_HUMAN : 200- 208: agyia VemAgilsA lgskt GSHR_HUMAN : 449- 455: lqgfa V--AvkmgA tkadf GSHR_PEA : 86- 92: agsgg Vr-Asrf-A snfga GSHR_PEA : 293- 298: eirdf V--Aenm-A lrgie GSHR_PEA : 311- 316: teesp V--Aitk-A adgsl GSHR_PEA : 311- 317: teesp V--AitkaA dgsls GSHR_PSEAE : 17- 23: agsgg Vr-Aarf-A agfga GSHR_PSEAE : 17- 24: agsgg VraArfa-A gfgar GSHR_PSEAE : 17- 24: agsgg Vr-AarfaA gfgar GSHR_PSEAE : 312- 319: vqltp ValAegm-A varrl GSHR_PSEAE : 418- 424: lqgia V--AmkagA tkqaf GSHR_SPISP : 34- 40: tepli Vd-Allc-A tgrtt GSHR_YEAST : 20- 27: ggsgg VasArra-A sygak GSHR_YEAST : 20- 26: ggsgg V--AsarrA asyga GSHR_YEAST : 150- 156: anhil V--AtggkA ifpen GSHR_YEAST : 438- 444: lqgfg V--AikmgA tkadf MERA_BACSR : 51- 59: pddvk VedAknaiA danyh MERA_BACSR : 101- 106: eehia V--Alen-A gakgi MERA_BACSR : 568- 575: aktlk VlgAhvv-A enagd MERA_BACSR : 581- 588: enagd ViyAatl-A vkfgl MERA_PSEAE : 280- 286: vigss Vv-Alel-A qafar MERA_PSEAE : 281- 286: igssv V--Alel-A qafar MERA_PSEAE : 316- 322: aigea Vt-Aafr-A egiev MERA_PSEAE : 413- 421: pqfvy VaaAagtrA ainmt MERA_PSEAE : 501- 508: hrlig Vq-AvapeA geliq MERA_SERMA : 28- 36: ekvpg VqsAivsyA kgaaq MERA_SERMA : 33- 40: vqsai VsyAkga-A qlald MERA_SERMA : 280- 286: vigss Vv-Alel-A qafar MERA_SERMA : 281- 286: igssv V--Alel-A qafar MERA_SERMA : 316- 322: sigea Vt-Aafr-A egikv MERA_SHIFL : 28- 36: ekvpg VqsAdvsyA kgsak MERA_SHIFL : 33- 40: vqsad VsyAkgs-A klaie MERA_SHIFL : 279- 285: vigss Vv-Alel-A qafar MERA_SHIFL : 280- 285: igssv V--Alel-A qafar MERA_SHIFL : 362- 367: adkll V--Atgr-A pntrk MERA_SHIFL : 416- 424: pqfvy VaaAagtrA ainmt MERA_SHIFL : 504- 511: grlig Vq-AvapeA geliq MERA_STAAU : 22- 29: gceeh VteAleq-A gakdv MERA_STAAU : 497- 504: enagd ViyAatl-A vqfgl MERA_STRLI : 139- 147: ggtat VeaAhyliA tgsap MERA_STRLI : 424- 431: egagd VitAaty-A itagl MERA_THIFE : 266- 272: vigss Vv-Alel-A qafar MERA_THIFE : 267- 272: igssv V--Alel-A qafar MERA_THIFE : 345- 350: adkll V--Atgr-A pntrr MERA_THIFE : 399- 407: pqfvy VaaAagtrA ainmm TYTR_CRIFA : 301- 308: ldkag VevAkng-A ikvda TYTR_CRIFA : 303- 308: kagve V--Akng-A ikvda TYTR_CRIFA : 337- 343: vmltp V--AinegA afvdt TYTR_CRIFA : 349- 356: afvdt Vf-AnkprA tdhtk TYTR_LEIDO : 336- 342: vmltp V--AinegA cvlle TYTR_TRYBB : 201- 209: ggfis VefAgifnA ykppg TYTR_TRYBB : 337- 343: lmltp V--AinegA alvdt TYTR_TRYCO : 201- 209: ggfis VefAgifnA ykpvg TYTR_TRYCO : 337- 343: imltp V--AinegA svvdt TYTR_TRYCR : 202- 210: ggfis VefAgifnA ykpkd TYTR_TRYCR : 337- 342: vmltp V--Aine-A aalvd TYTR_TRYCR : 337- 343: vmltp V--AineaA alvdt S 19: 11.0102 109( 37) V-x(1,3)-L-x(3,4)-G Occurences: 109(37) DLD1_PSEPU : 103- 111: rlttg VaalLkkh-G vkvvh DLD1_PSEPU : 103- 111: rlttg Vaa-LlkkhG vkvvh DLD1_PSEPU : 219- 227: eltap VaesLkkl-G ialhl DLD2_PSEPU : 179- 187: lefqa VpkrLgvi-G agvig DLD3_PSEPU : 173- 181: lslpq VpkhLvvi-G agvig DLD3_PSEPU : 248- 257: asadg VslvLepaaG gtaes DLDH_ACHLA : 99- 107: qltng VaflLkkn-G vdvyn DLDH_ACHLA : 99- 107: qltng Vaf-LlkknG vdvyn DLDH_AZOVI : 106- 114: nltgg Vas-LikanG vtlfe DLDH_AZOVI : 115- 122: ikang Vt--LfeghG kllag DLDH_AZOVI : 180- 188: ldfqn VpgkLgvi-G agvig DLDH_AZOVI : 293- 299: aadsg Vt--Lder-G fiyvd DLDH_BACST : 175- 183: lnlge VpksLvvi-G ggyig DLDH_BACST : 175- 184: lnlge VpksLvvigG gyigi DLDH_BACST : 202- 209: nfgtk Vti-Lega-G eilsg DLDH_BACSU : 223- 231: qmssl VtrrLkkk-G nveih DLDH_ECOLI : 111- 120: grkvk VvngLgkftG antle DLDH_ECOLI : 112- 120: rkvkv Vng-LgkftG antle DLDH_ECOLI : 173- 181: lelke VperLlvm-G ggiig DLDH_ECOLI : 173- 182: lelke VperLlvmgG giigl DLDH_HAEIN : 174- 182: lklke VpkkLlim-G ggiig DLDH_HAEIN : 174- 183: lklke VpkkLlimgG giigl DLDH_HALVO : 101- 109: qltgg Vek-LckanG vnlve DLDH_HALVO : 177- 185: leadt VperLvvv-G ggyig DLDH_HALVO : 177- 186: leadt VperLvvvgG gyigm DLDH_HUMAN : 7- 15: qswsr VycsLakr-G hfnri DLDH_HUMAN : 242- 249: advta Vef-Lghv-G gvgid DLDH_HUMAN : 242- 250: advta Vef-LghvgG vgidm DLDH_HUMAN : 308- 314: vitcd Vl--Lvci-G rrpft DLDH_PEA : 111- 120: vkvsn VeidLaammG qkdka DLDH_PEA : 301- 307: iiead Vv--Lvsa-G rtpft DLDH_PEA : 367- 375: dgvac Vey-LagkvG hvdyd DLDH_PIG : 7- 15: qswsr VyctLakr-G hfnri DLDH_PIG : 242- 249: advta Vel-Lghv-G gigid DLDH_PIG : 242- 249: advta Ve--LlghvG gigid DLDH_PIG : 242- 250: advta Vel-LghvgG igidm DLDH_PIG : 308- 314: vitcd Vl--Lvci-G rrpft DLDH_PSEFL : 179- 187: lefqa VpkkLgvi-G agvig DLDH_PSEFL : 292- 298: aadsg Vt--Lder-G fiyvd DLDH_TRYBB : 169- 175: pfdek Vv--Lsst-G alalq DLDH_TRYBB : 231- 238: vtdal Vga-Lkrn-G edevp DLDH_TRYBB : 299- 305: leknn Vs--Lner-G fvkig DLDH_YEAST : 299- 305: nleae Vl--Lvav-G rrpyi DLDH_YEAST : 365- 373: egiaa Vem-LktghG hvnyn GSHR_ARATH : 201- 208: lskan Vk--LiegrG kvidp GSHR_ARATH : 406- 412: inltp Va--Lmeg-G alakt GSHR_CAEEL : 208- 214: vgggy Va--Leca-G flsaf GSHR_CAEEL : 243- 251: dcvhf VmehLktt-G vkvke GSHR_ECOLI : 254- 262: grset Vdc-LiwaiG repan GSHR_HAEIN : 220- 227: ivetl Vev-Laqd-G iqlht GSHR_HAEIN : 408- 415: gkdek Vvg-Lhgi-G fgvde GSHR_HAEIN : 409- 415: kdekv Vg--Lhgi-G fgvde GSHR_HUMAN : 282- 290: tmipd VdclLwai-G rvpnt GSHR_HUMAN : 282- 290: tmipd Vdc-LlwaiG rvpnt GSHR_PEA : 187- 194: lknag Vk--LiegrG kivda GSHR_PEA : 477- 485: saetn VvlgLhmc-G edaae GSHR_PEA : 478- 485: aetnv Vlg-Lhmc-G edaae GSHR_PSEAE : 48- 56: vnvgc VpkkLlvy-G ahfse GSHR_PSEAE : 209- 218: gfdrs VrehLrdelG kkgld GSHR_PSEAE : 276- 282: lenta Vk--Ltdk-G fiavd GSHR_PSEAE : 342- 349: lipta Vfs-Lpni-G tvglt GSHR_SPISP : 19- 26: virgc Vpk-Ltlt-G ddtep GSHR_SPISP : 34- 42: tepli VdalLcat-G rttqs GSHR_SPISP : 34- 42: tepli Vda-LlcatG rttqs GSHR_YEAST : 270- 278: ksidd Vde-LiwtiG rkshl GSHR_YEAST : 419- 426: gpnek Vvg-Lhiv-G dssae GSHR_YEAST : 420- 426: pnekv Vg--Lhiv-G dssae MERA_BACSR : 20- 28: gceqh VavaLenm-G akaie MERA_BACSR : 22- 28: eqhva Va--Lenm-G akaie MERA_BACSR : 101- 107: eehia Va--Lena-G akgie MERA_BACSR : 160- 166: ekrtd Vs--Lnde-G nydyd MERA_BACSR : 265- 272: rneky Vn--LiddyG felik MERA_BACSR : 333- 341: lelkk VpnrLtvi-G sgyig MERA_BACSR : 502- 509: glnqk Vn--LevvpG vtfts MERA_BACSR : 623- 631: tfdkd Vsk-LsccaG MERA_PSEAE : 18- 27: scaah VkeaLekvpG vqsal MERA_PSEAE : 76- 84: ladnr Vgl-LdkvrG wmaaa MERA_PSEAE : 124- 130: eqgaq Vt--Lier-G tiggt MERA_PSEAE : 221- 227: dqslt Vr--Lneg-G ervvm MERA_PSEAE : 553- 561: tfnkd Vkq-LsccaG MERA_SERMA : 18- 27: scaah VkeaLekvpG vqsai MERA_SERMA : 124- 130: eqgaq Vt--Lier-G tiggt MERA_SERMA : 221- 227: drdls Vs--Lneg-G ervvm MERA_SERMA : 452- 460: tftkd Vkq-LsccaG MERA_SHIFL : 18- 27: scavh VkdaLekvpG vqsad MERA_SHIFL : 123- 129: eqgar Vt--Lier-G tiggt MERA_SHIFL : 220- 226: nrnli Vq--Lndg-G ervva MERA_SHIFL : 380- 386: ldatg Vt--Ltpq-G aivid MERA_SHIFL : 556- 564: tfnkd Vkq-LsccaG MERA_STAAU : 22- 30: gceeh VteaLeqa-G akdvs MERA_STAAU : 249- 257: lelke VpqrLavi-G sgyia MERA_STAAU : 539- 547: tfdkd Vsk-LsccaG MERA_STRLI : 129- 135: gpmle Va--Lndg-G tatve MERA_STRLI : 400- 407: dtrgl Vk--LiaerG tgkll MERA_STRLI : 466- 474: tftsd Vak-LsccaG MERA_THIFE : 23- 32: gcaah VrkaLegvpG vreaq MERA_THIFE : 205- 213: kdsrs VvvhLndg-G ervvm MERA_THIFE : 206- 213: dsrsv Vvh-Lndg-G ervvm MERA_THIFE : 207- 213: srsvv Vh--Lndg-G ervvm MERA_THIFE : 537- 545: tftrd Vkq-LsccaG TYTR_CRIFA : 33- 41: kkrva Vid-LqkhhG pphya TYTR_CRIFA : 58- 66: vnvgc VpkkLmvt-G anymd TYTR_CRIFA : 217- 223: arggq Vd--Layr-G dmilr TYTR_LEIDO : 8- 15: raydl Vv--LgagsG gleag TYTR_LEIDO : 58- 66: vnvgc VpkkLmvt-G aqymd TYTR_LEIDO : 217- 223: pcggy Vd--Lcyr-G dlilr TYTR_LEIDO : 234- 243: gfdte VrksLtkqlG angir TYTR_LEIDO : 344- 351: negac Vl--LetvfG gkpra TYTR_TRYBB : 58- 66: vnvgc VpkkLmvt-G aqymd TYTR_TRYBB : 238- 246: tiree VtkqLtan-G ieimt TYTR_TRYBB : 258- 264: enpak Vs--Lntd-G skhvt TYTR_TRYBB : 299- 307: lqlgn VgvkLtpk-G gvqvd TYTR_TRYBB : 299- 308: lqlgn VgvkLtpkgG vqvde TYTR_TRYBB : 301- 307: lgnvg Vk--Ltpk-G gvqvd TYTR_TRYBB : 301- 308: lgnvg Vk--LtpkgG vqvde TYTR_TRYBB : 427- 433: gtvlg Vh--Llgd-G apeii TYTR_TRYCO : 58- 66: vnvgc VpkkLmvt-G aqymd TYTR_TRYCO : 299- 307: lqlqt VgvnLtdk-G aiqvd TYTR_TRYCO : 301- 307: lqtvg Vn--Ltdk-G aiqvd TYTR_TRYCR : 59- 67: vnvgc VpkkLmvt-G aqyme TYTR_TRYCR : 218- 224: pkdgq Vt--Lcyr-G emilr TYTR_TRYCR : 259- 265: enpak Ve--Lnad-G sksvt T 20: 11.0102 135( 37) V-x(1,3)-L-x(2,3)-G Occurences: 135(37) DLD1_PSEPU : 96- 102: wkdgi Vdr-Ltt-G vaall DLD1_PSEPU : 103- 111: rlttg VaalLkkhG vkvvh DLD1_PSEPU : 219- 227: eltap VaesLkklG ialhl DLD2_PSEPU : 98- 104: rkagi Vkn-Ltg-G vatlf DLD2_PSEPU : 146- 151: ieaen Vi--Las-G srpid DLD2_PSEPU : 179- 187: lefqa VpkrLgviG agvig DLD2_PSEPU : 190- 196: vigag Vig-Lel-G svwar DLD3_PSEPU : 92- 98: qkdes Vtg-Ltk-G ieylf DLD3_PSEPU : 173- 181: lslpq VpkhLvviG agvig DLD3_PSEPU : 184- 190: vigag Vig-Lel-G svwrr DLD3_PSEPU : 342- 349: gkphe VnynLip-G viytr DLDH_ACHLA : 91- 98: srkdg VvkqLtn-G vafll DLDH_ACHLA : 92- 98: rkdgv Vkq-Ltn-G vafll DLDH_ACHLA : 99- 107: qltng VaflLkknG vdvyn DLDH_ACHLA : 323- 330: egita VqhiLki-G hakmn DLDH_AZOVI : 99- 105: rkdqi Vrn-Ltg-G vasli DLDH_AZOVI : 115- 120: ikang Vt--Lfe-G hgkll DLDH_AZOVI : 147- 152: ldten Vi--Las-G skpve DLDH_AZOVI : 180- 188: ldfqn VpgkLgviG agvig DLDH_AZOVI : 191- 197: vigag Vig-Lel-G svwar DLDH_AZOVI : 293- 299: aadsg Vt--LderG fiyvd DLDH_BACST : 46- 51: gnlgg Vc--Lnv-G cipsk DLDH_BACST : 95- 102: ewkas VvkkLtg-G vegll DLDH_BACST : 96- 102: wkasv Vkk-Ltg-G vegll DLDH_BACST : 103- 109: kltgg Veg-Llk-G nkvei DLDH_BACST : 175- 183: lnlge VpksLvviG ggyig DLDH_BACST : 202- 209: nfgtk Vti-LegaG eilsg DLDH_BACST : 235- 242: kgvev VtnaLak-G aeere DLDH_BACSU : 46- 51: atlgg Vc--Lnv-G cipsk DLDH_BACSU : 95- 102: ewkas VvnkLtg-G vagll DLDH_BACSU : 96- 102: wkasv Vnk-Ltg-G vagll DLDH_BACSU : 103- 109: kltgg Vag-Llk-G nkvdv DLDH_BACSU : 203- 208: fgtel Vi--Leg-G deilp DLDH_BACSU : 223- 231: qmssl VtrrLkkkG nveih DLDH_ECOLI : 8- 14: eiktq Vvv-Lga-G pagys DLDH_ECOLI : 9- 14: iktqv Vv--Lga-G pagys DLDH_ECOLI : 43- 48: ntlgg Vc--Lnv-G cipsk DLDH_ECOLI : 92- 99: twkek VinqLtg-G lagma DLDH_ECOLI : 173- 181: lelke VperLlvmG ggiig DLDH_HAEIN : 8- 14: eiktq Vvv-Lga-G pagys DLDH_HAEIN : 9- 14: iktqv Vv--Lga-G pagys DLDH_HAEIN : 43- 48: stlgg Vc--Lnv-G cipsk DLDH_HAEIN : 92- 99: agkea VvakLtg-G lagma DLDH_HAEIN : 93- 99: gkeav Vak-Ltg-G lagma DLDH_HAEIN : 174- 182: lklke VpkkLlimG ggiig DLDH_HALVO : 93- 100: dwksg VvdqLtg-G veklc DLDH_HALVO : 94- 100: wksgv Vdq-Ltg-G veklc DLDH_HALVO : 110- 115: ckang Vn--Lve-G tarfk DLDH_HALVO : 177- 185: leadt VperLvvvG ggyig DLDH_HUMAN : 7- 15: qswsr VycsLakrG hfnri DLDH_HUMAN : 131- 137: qksta Vka-Ltg-G iahlf DLDH_HUMAN : 242- 249: advta Vef-LghvG gvgid DLDH_HUMAN : 308- 314: vitcd Vl--LvciG rrpft DLDH_PEA : 126- 132: qkdka Vsn-Ltr-G ieglf DLDH_PEA : 301- 307: iiead Vv--LvsaG rtpft DLDH_PIG : 7- 15: qswsr VyctLakrG hfnri DLDH_PIG : 131- 137: qksna Vka-Ltg-G iahlf DLDH_PIG : 242- 249: advta Vel-LghvG gigid DLDH_PIG : 308- 314: vitcd Vl--LvciG rrpft DLDH_PSEFL : 98- 104: rkani Vkn-Ltg-G iatlf DLDH_PSEFL : 179- 187: lefqa VpkkLgviG agvig DLDH_PSEFL : 190- 196: vigag Vig-Lel-G svwar DLDH_PSEFL : 292- 298: aadsg Vt--LderG fiyvd DLDH_TRYBB : 101- 107: qkeks Vng-Lts-G veyll DLDH_TRYBB : 169- 175: pfdek Vv--LsstG alalq DLDH_TRYBB : 193- 199: viggg Vig-Lel-G svwar DLDH_TRYBB : 231- 238: vtdal Vga-LkrnG edevp DLDH_TRYBB : 299- 305: leknn Vs--LnerG fvkig DLDH_YEAST : 116- 122: akdda Vkq-Ltg-G iellf DLDH_YEAST : 299- 305: nleae Vl--LvavG rrpyi DLDH_YEAST : 365- 371: egiaa Vem-Lkt-G hghvn GSHR_ARATH : 201- 206: lskan Vk--Lie-G rgkvi GSHR_ARATH : 406- 411: inltp Va--Lme-G galak GSHR_ARATH : 406- 412: inltp Va--LmegG alakt GSHR_CAEEL : 208- 214: vgggy Va--LecaG flsaf GSHR_CAEEL : 243- 251: dcvhf VmehLkttG vkvke GSHR_ECOLI : 421- 426: lqgfa Va--Lkm-G atkkd GSHR_HAEIN : 125- 130: ahtie Vt--Lad-G tkeqv GSHR_HAEIN : 220- 227: ivetl Vev-LaqdG iqlht GSHR_HAEIN : 408- 415: gkdek Vvg-LhgiG fgvde GSHR_HAEIN : 409- 415: kdekv Vg--LhgiG fgvde GSHR_HUMAN : 282- 290: tmipd VdclLwaiG rvpnt GSHR_PEA : 187- 192: lknag Vk--Lie-G rgkiv GSHR_PEA : 392- 397: vnltp Va--Lme-G valak GSHR_PEA : 477- 485: saetn VvlgLhmcG edaae GSHR_PEA : 478- 485: aetnv Vlg-LhmcG edaae GSHR_PSEAE : 48- 56: vnvgc VpkkLlvyG ahfse GSHR_PSEAE : 107- 112: lvnsg Vt--Lle-G harll GSHR_PSEAE : 276- 282: lenta Vk--LtdkG fiavd GSHR_PSEAE : 312- 317: vqltp Va--Lae-G mavar GSHR_PSEAE : 342- 349: lipta Vfs-LpniG tvglt GSHR_SPISP : 19- 26: virgc Vpk-LtltG ddtep GSHR_SPISP : 34- 42: tepli VdalLcatG rttqs GSHR_YEAST : 419- 426: gpnek Vvg-LhivG dssae GSHR_YEAST : 420- 426: pnekv Vg--LhivG dssae MERA_BACSR : 20- 28: gceqh VavaLenmG akaie MERA_BACSR : 22- 28: eqhva Va--LenmG akaie MERA_BACSR : 101- 107: eehia Va--LenaG akgie MERA_BACSR : 160- 166: ekrtd Vs--LndeG nydyd MERA_BACSR : 333- 341: lelkk VpnrLtviG sgyig MERA_BACSR : 589- 596: aatla VkfgLtv-G dlret MERA_PSEAE : 124- 130: eqgaq Vt--LierG tiggt MERA_PSEAE : 221- 226: dqslt Vr--Lne-G gervv MERA_PSEAE : 221- 227: dqslt Vr--LnegG ervvm MERA_SERMA : 124- 130: eqgaq Vt--LierG tiggt MERA_SERMA : 221- 226: drdls Vs--Lne-G gervv MERA_SERMA : 221- 227: drdls Vs--LnegG ervvm MERA_SHIFL : 123- 129: eqgar Vt--LierG tiggt MERA_SHIFL : 220- 225: nrnli Vq--Lnd-G gervv MERA_SHIFL : 220- 226: nrnli Vq--LndgG ervva MERA_SHIFL : 380- 386: ldatg Vt--LtpqG aivid MERA_STAAU : 22- 30: gceeh VteaLeqaG akdvs MERA_STAAU : 249- 257: lelke VpqrLaviG sgyia MERA_STRLI : 129- 134: gpmle Va--Lnd-G gtatv MERA_STRLI : 129- 135: gpmle Va--LndgG tatve MERA_THIFE : 205- 212: kdsrs VvvhLnd-G gervv MERA_THIFE : 205- 213: kdsrs VvvhLndgG ervvm MERA_THIFE : 206- 212: dsrsv Vvh-Lnd-G gervv MERA_THIFE : 206- 213: dsrsv Vvh-LndgG ervvm MERA_THIFE : 207- 212: srsvv Vh--Lnd-G gervv MERA_THIFE : 207- 213: srsvv Vh--LndgG ervvm MERA_THIFE : 282- 288: rlgsh Vti-Lar-G tlflr TYTR_CRIFA : 58- 66: vnvgc VpkkLmvtG anymd TYTR_CRIFA : 217- 223: arggq Vd--LayrG dmilr TYTR_CRIFA : 280- 286: eadyd Vvm-Lai-G rvprs TYTR_CRIFA : 281- 286: adydv Vm--Lai-G rvprs TYTR_CRIFA : 441- 448: eiiqs VaicLkm-G akisd TYTR_LEIDO : 8- 13: raydl Vv--Lga-G sggle TYTR_LEIDO : 58- 66: vnvgc VpkkLmvtG aqymd TYTR_LEIDO : 217- 223: pcggy Vd--LcyrG dlilr TYTR_LEIDO : 281- 286: edydq Vm--Lai-G vprsq TYTR_TRYBB : 58- 66: vnvgc VpkkLmvtG aqymd TYTR_TRYBB : 238- 246: tiree VtkqLtanG ieimt TYTR_TRYBB : 258- 264: enpak Vs--LntdG skhvt TYTR_TRYBB : 299- 307: lqlgn VgvkLtpkG gvqvd TYTR_TRYBB : 301- 307: lgnvg Vk--LtpkG gvqvd TYTR_TRYBB : 427- 433: gtvlg Vhl-Lgd-G apeii TYTR_TRYBB : 427- 433: gtvlg Vh--LlgdG apeii TYTR_TRYCO : 58- 66: vnvgc VpkkLmvtG aqymd TYTR_TRYCO : 299- 307: lqlqt VgvnLtdkG aiqvd TYTR_TRYCO : 301- 307: lqtvg Vn--LtdkG aiqvd TYTR_TRYCR : 59- 67: vnvgc VpkkLmvtG aqyme TYTR_TRYCR : 218- 224: pkdgq Vt--LcyrG emilr TYTR_TRYCR : 259- 265: enpak Ve--LnadG sksvt Number of patterns evaluated by Pratt:882 Total running time: 5 seconds