------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file PTS_EIIA_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PTS_EIIA_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LACY_LACDE 627 LACY_STRTR 634 PTAA_ECOLI 648 PTAA_KLEPN 651 PTBA_BACSU 609 PTBA_ECOLI 625 PTBA_ERWCH 631 PTGA_BACST 324 PTGA_BACSU 699 PTGA_ECOLI 168 PTGA_HAEIN 165 PTGA_MYCCA 154 PTGA_SALTY 168 PTSA_PEDPE 651 PTSA_STRMU 664 RAFP_PEDPE 641 YZFA_BACSU 117 Pratt run started at Thu Feb 6 20:56:19 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 17( 17) G-x(5)-H-x-G-x(2)-T-x(4)-G-x(2)-F 2: 25.0203 17( 17) D-x(2)-F-x(5)-G-x-G-x-A-x(2)-P 3: 20.8503 17( 17) H-x-G-x(2)-T-x(4)-G-x(2)-F 4: 20.8503 17( 17) F-x(5)-G-x-G-x-A-x(2)-P 5: 16.6802 17( 17) G-x-G-x-A-x(2)-P 6: 15.6802 18( 17) V-x-L-x(0,1)-G-x(2,3)-F 7: 15.6802 17( 17) T-x(2)-L-x(1,2)-G-x(1,2)-F 8: 15.6802 23( 17) L-x(3,4)-G-x(3)-V-x(2,3)-G 9: 15.6802 24( 17) L-x(2,4)-G-x(3)-V-x(3)-G 10: 15.1802 17( 17) G-x(1,3)-D-x(0,1)-T-x(4)-G 11: 12.5102 21( 17) D-T-V 12: 12.5102 19( 17) G-x-A-x(2)-P 13: 12.0102 25( 17) G-x(1,2)-V-x(2)-G 14: 12.0102 44( 17) V-x(2)-G-x(2,3)-V 15: 12.0102 26( 17) G-x-G-x(1,2)-A 16: 12.0102 22( 17) T-V-x(2,3)-G 17: 12.0102 19( 17) L-x(1,2)-H-x-G 18: 12.0102 31( 17) G-x(2)-I-x(4,5)-G 19: 11.5102 26( 17) I-x(0,1)-F-x(0,1)-T 20: 11.5102 39( 17) V-x(2)-G-x(3,5)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 76.4694 17( 17) G-x(2)-[ILV]-[FLV]-[ILV]-H-[FILMV]-G-[IL]-[DG]-T-[AV]-x-[LM]-x-G-x(2)-F-x(3)-[AIV]-x(2)-[DG]-[ADQST]-x-[IV]-x(2)-G-[DEQ]-x-[ILV]-[GILV]-x-[FMV]-x(4)-[ILV] B 2: 64.3258 17( 17) H-[FILMV]-G-[IL]-[DG]-T-[AV]-x-[LM]-x-G-x(2)-F-x(3)-[AIV]-x(2)-[DG]-[ADQST]-x-[IV]-x(2)-G-[DEQ]-x-[ILV]-[GILV]-x-[FMV]-x(4)-[ILV] C 3: 50.0288 17( 17) D-x(2)-F-x-[ADEGQS]-x(2)-[LMV]-G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] D 4: 45.8588 17( 17) F-x-[ADEGQS]-x(2)-[LMV]-G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] E 5: 37.1960 17( 17) G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] F 6: 36.7749 17( 17) G-[DEK]-G-x-A-[GILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] G 7: 30.3947 17( 17) G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] H 8: 23.2342 18( 17) L-x(1,2)-H-x-G-[FIL]-[DGS]-x-[ASV]-x(3)-[GI] I 9: 21.5601 17( 17) G-x(1,2)-V-x(2)-G-[DEQ]-x-[ILV]-[AGILV]-x-[FLMV] J 10: 18.5350 17( 17) D-T-V-x-[LMV]-x-[GV] K 11: 18.2792 17( 17) T-[AGV]-x-L-x(1,2)-G-x(1,2)-F L 12: 17.9194 22( 17) L-x(3,4)-G-[AILV]-x(2)-V-x(2,3)-G M 13: 17.9127 20( 17) L-x(2,4)-G-x-[ADEG]-x-V-x(3)-G N 14: 15.6802 18( 17) V-x-L-x(0,1)-G-x(2,3)-F O 15: 15.1802 17( 17) G-x(1,3)-D-x(0,1)-T-x(4)-G P 16: 12.0102 44( 17) V-x(2)-G-x(2,3)-V Q 17: 12.0102 22( 17) T-V-x(2,3)-G R 18: 12.0102 19( 17) L-x(1,2)-H-x-G S 19: 12.0102 31( 17) G-x(2)-I-x(4,5)-G T 20: 11.5102 26( 17) I-x(0,1)-F-x(0,1)-T Best patterns with alignements: fitness hits(seqs) Pattern A 1: 76.4694 17( 17) G-x(2)-[ILV]-[FLV]-[ILV]-H-[FILMV]-G-[IL]-[DG]-T-[AV]-x-[LM]-x-G-x(2)-F-x(3)-[AIV]-x(2)-[DG]-[ADQST]-x-[IV]-x(2)-G-[DEQ]-x-[ILV]-[GILV]-x-[FMV]-x(4)-[ILV] Occurences: 17(17) LACY_LACDE : 539- 582: leneh GvlVLIHLGLGTAkLnGtgFvsyVeeGSqVeaGQqILeFwdpaI kqakl LACY_STRTR : 546- 589: iesed GviVLIHVGIGTVkLnGegFisyVeqGDrVevGQkLLeFwspiI ekngl PTAA_ECOLI : 563- 606: letek GaeIVVHMGIDTVaLeGkgFkrlVeeGAqVsaGQpILeMdldyL nanar PTAA_KLEPN : 565- 608: letnn GaeIVVHMGIDTVaLeGkgFkrlVeeGTdVkaGEpILeMdldfL nanar PTBA_BACSU : 526- 569: itsdq GaeILIHIGLDTVkLeGqwFtahIkeGDkVapGDpLVsFdleqI kaagy PTBA_ECOLI : 541- 584: iesdd GveILIHVGIDTVkLdGkfFsahVnvGDkVntGDrLIsFdipaI reagf PTBA_ERWCH : 547- 590: lasrg GaeVLIHVGIDTVrLdGryFtphVrvGDvVrqGDlLLeFdgpaI eaagy PTGA_BACST : 240- 283: iqsag GheILIHVGIDTVkLnGqgFealVkeGDeVkkGQpILrVdldyV kqnap PTGA_BACSU : 614- 657: lqsdg GreILIHFGIDTVsLkGegFtsfVseGDrVepGQkLLeVdldaV kpnvp PTGA_ECOLI : 84- 127: iesds GveLFVHFGIDTVeLkGegFkriAeeGQrVkvGDtVIeFdlplL eekak PTGA_HAEIN : 81- 124: meske GveLFVHFGIDTVeLkGegFtriAqeGQsVkrGDtVIeFdlalL eskak PTGA_MYCCA : 72- 115: iqtks GveILLHIGLDTVsLdGngFesfVtqDQeVnaGDkLVtVdlksV akkvp PTGA_SALTY : 84- 127: iesds GieLFVHFGIDTVeLkGegFkriAeeGQrVkvGDpVIeFdlplL eekak PTSA_PEDPE : 556- 599: iktta GaeILIHLGLDTVnLnGehFttnVqkGDtVhqGDlLGtFdiaaL kaany PTSA_STRMU : 579- 622: iksdn GaeILIHIGIDTVsMeGkgFeqkVqaDQkIkkGDvLGtFdsdkI aeagl RAFP_PEDPE : 553- 596: lvgdn GivLLIHIGLGTVkLrGtgFisyVeeGQhVqqGDeLLeFwdptI kqagl YZFA_BACSU : 47- 90: fmsag GteILIHVGIDTVkLnGegFeahVtsGQaVkqGElLLtFdlnyI kqhaa B 2: 64.3258 17( 17) H-[FILMV]-G-[IL]-[DG]-T-[AV]-x-[LM]-x-G-x(2)-F-x(3)-[AIV]-x(2)-[DG]-[ADQST]-x-[IV]-x(2)-G-[DEQ]-x-[ILV]-[GILV]-x-[FMV]-x(4)-[ILV] Occurences: 17(17) LACY_LACDE : 545- 582: vlvli HLGLGTAkLnGtgFvsyVeeGSqVeaGQqILeFwdpaI kqakl LACY_STRTR : 552- 589: vivli HVGIGTVkLnGegFisyVeqGDrVevGQkLLeFwspiI ekngl PTAA_ECOLI : 569- 606: aeivv HMGIDTVaLeGkgFkrlVeeGAqVsaGQpILeMdldyL nanar PTAA_KLEPN : 571- 608: aeivv HMGIDTVaLeGkgFkrlVeeGTdVkaGEpILeMdldfL nanar PTBA_BACSU : 532- 569: aeili HIGLDTVkLeGqwFtahIkeGDkVapGDpLVsFdleqI kaagy PTBA_ECOLI : 547- 584: veili HVGIDTVkLdGkfFsahVnvGDkVntGDrLIsFdipaI reagf PTBA_ERWCH : 553- 590: aevli HVGIDTVrLdGryFtphVrvGDvVrqGDlLLeFdgpaI eaagy PTGA_BACST : 246- 283: heili HVGIDTVkLnGqgFealVkeGDeVkkGQpILrVdldyV kqnap PTGA_BACSU : 620- 657: reili HFGIDTVsLkGegFtsfVseGDrVepGQkLLeVdldaV kpnvp PTGA_ECOLI : 90- 127: velfv HFGIDTVeLkGegFkriAeeGQrVkvGDtVIeFdlplL eekak PTGA_HAEIN : 87- 124: velfv HFGIDTVeLkGegFtriAqeGQsVkrGDtVIeFdlalL eskak PTGA_MYCCA : 78- 115: veill HIGLDTVsLdGngFesfVtqDQeVnaGDkLVtVdlksV akkvp PTGA_SALTY : 90- 127: ielfv HFGIDTVeLkGegFkriAeeGQrVkvGDpVIeFdlplL eekak PTSA_PEDPE : 562- 599: aeili HLGLDTVnLnGehFttnVqkGDtVhqGDlLGtFdiaaL kaany PTSA_STRMU : 585- 622: aeili HIGIDTVsMeGkgFeqkVqaDQkIkkGDvLGtFdsdkI aeagl RAFP_PEDPE : 559- 596: ivlli HIGLGTVkLrGtgFisyVeeGQhVqqGDeLLeFwdptI kqagl YZFA_BACSU : 53- 90: teili HVGIDTVkLnGegFeahVtsGQaVkqGElLLtFdlnyI kqhaa C 3: 50.0288 17( 17) D-x(2)-F-x-[ADEGQS]-x(2)-[LMV]-G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] Occurences: 17(17) LACY_LACDE : 493- 522: ldmvd DpvFaDkkLGDGfALvPadgkVyAPfaGtV rqlak LACY_STRTR : 500- 529: lssvn DehFaSgsMGKGfAIkPtdgaVfAPisGtI rqilp PTAA_ECOLI : 517- 546: ldqvp DeaFaSkaVGDGvAVkPtdkiVvSPaaGtI vkifn PTAA_KLEPN : 519- 548: leqvp DeaFaSkaVGDGiAVkPtdniVvAPaaGtV vkifn PTBA_BACSU : 480- 509: lsevk DgvFsAgvMGKGfAIePeegeVvSPvrGsV ttifk PTBA_ECOLI : 495- 524: lihva DttFaSglLGKGiAIlPsvgeVrSPvaGrI aslfa PTBA_ERWCH : 501- 530: leqva DrtFaSgvMGKGiAIrPtqgrLyAPvdGtV aslfk PTGA_BACST : 194- 223: laevp DqvFsQkmMGDGfAVmPtdgtVvSPvdGkI invfp PTGA_BACSU : 568- 597: itdvp DqvFsGkmMGDGfAIlPsegiVvSPvrGkI lnvfp PTGA_ECOLI : 38- 67: iedvp DvvFaEkiVGDGiAIkPtgnkMvAPvdGtI gkife PTGA_HAEIN : 35- 64: iedvp DvvFsEkiVGDGvAVrPignkIvAPvdGvI gkife PTGA_MYCCA : 26- 55: ldeve DevFkErmLGDGfAInPksndFhAPvsGkL vtafp PTGA_SALTY : 38- 67: iedvp DvvFaEkiVGDGiAIkPtgnkMvAPvdGtI gkife PTSA_PEDPE : 510- 539: lkqvn DqvFsAeiMGKGaAIvPssdqVvAPadGvI tvtyd PTSA_STRMU : 533- 562: ltsvn DpvFsSeaMGKGiAIkPsgntVyAPvdGtV qiafd RAFP_PEDPE : 507- 536: laqvn DptFaAgtLGDGfAIkPsdgrIlAPfdAtV rqvft YZFA_BACSU : 1- 30: DqvFsEkmMGEGfAIiPsegkVvAPadGeI vsifp D 4: 45.8588 17( 17) F-x-[ADEGQS]-x(2)-[LMV]-G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] Occurences: 17(17) LACY_LACDE : 496- 522: vddpv FaDkkLGDGfALvPadgkVyAPfaGtV rqlak LACY_STRTR : 503- 529: vndeh FaSgsMGKGfAIkPtdgaVfAPisGtI rqilp PTAA_ECOLI : 520- 546: vpdea FaSkaVGDGvAVkPtdkiVvSPaaGtI vkifn PTAA_KLEPN : 522- 548: vpdea FaSkaVGDGiAVkPtdniVvAPaaGtV vkifn PTBA_BACSU : 483- 509: vkdgv FsAgvMGKGfAIePeegeVvSPvrGsV ttifk PTBA_ECOLI : 498- 524: vadtt FaSglLGKGiAIlPsvgeVrSPvaGrI aslfa PTBA_ERWCH : 504- 530: vadrt FaSgvMGKGiAIrPtqgrLyAPvdGtV aslfk PTGA_BACST : 197- 223: vpdqv FsQkmMGDGfAVmPtdgtVvSPvdGkI invfp PTGA_BACSU : 571- 597: vpdqv FsGkmMGDGfAIlPsegiVvSPvrGkI lnvfp PTGA_ECOLI : 41- 67: vpdvv FaEkiVGDGiAIkPtgnkMvAPvdGtI gkife PTGA_HAEIN : 38- 64: vpdvv FsEkiVGDGvAVrPignkIvAPvdGvI gkife PTGA_MYCCA : 29- 55: vedev FkErmLGDGfAInPksndFhAPvsGkL vtafp PTGA_SALTY : 41- 67: vpdvv FaEkiVGDGiAIkPtgnkMvAPvdGtI gkife PTSA_PEDPE : 513- 539: vndqv FsAeiMGKGaAIvPssdqVvAPadGvI tvtyd PTSA_STRMU : 536- 562: vndpv FsSeaMGKGiAIkPsgntVyAPvdGtV qiafd RAFP_PEDPE : 510- 536: vndpt FaAgtLGDGfAIkPsdgrIlAPfdAtV rqvft YZFA_BACSU : 4- 30: dqv FsEkmMGEGfAIiPsegkVvAPadGeI vsifp E 5: 37.1960 17( 17) G-[DEK]-G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] Occurences: 17(17) LACY_LACDE : 502- 522: adkkl GDGfALvPadgkVyAPfaGtV rqlak LACY_STRTR : 509- 529: asgsm GKGfAIkPtdgaVfAPisGtI rqilp PTAA_ECOLI : 526- 546: askav GDGvAVkPtdkiVvSPaaGtI vkifn PTAA_KLEPN : 528- 548: askav GDGiAVkPtdniVvAPaaGtV vkifn PTBA_BACSU : 489- 509: sagvm GKGfAIePeegeVvSPvrGsV ttifk PTBA_ECOLI : 504- 524: asgll GKGiAIlPsvgeVrSPvaGrI aslfa PTBA_ERWCH : 510- 530: asgvm GKGiAIrPtqgrLyAPvdGtV aslfk PTGA_BACST : 203- 223: sqkmm GDGfAVmPtdgtVvSPvdGkI invfp PTGA_BACSU : 577- 597: sgkmm GDGfAIlPsegiVvSPvrGkI lnvfp PTGA_ECOLI : 47- 67: aekiv GDGiAIkPtgnkMvAPvdGtI gkife PTGA_HAEIN : 44- 64: sekiv GDGvAVrPignkIvAPvdGvI gkife PTGA_MYCCA : 35- 55: kerml GDGfAInPksndFhAPvsGkL vtafp PTGA_SALTY : 47- 67: aekiv GDGiAIkPtgnkMvAPvdGtI gkife PTSA_PEDPE : 519- 539: saeim GKGaAIvPssdqVvAPadGvI tvtyd PTSA_STRMU : 542- 562: sseam GKGiAIkPsgntVyAPvdGtV qiafd RAFP_PEDPE : 516- 536: aagtl GDGfAIkPsdgrIlAPfdAtV rqvft YZFA_BACSU : 10- 30: sekmm GEGfAIiPsegkVvAPadGeI vsifp F 6: 36.7749 17( 17) G-[DEK]-G-x-A-[GILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] Occurences: 17(17) LACY_LACDE : 502- 522: adkkl GDGfALvPadgkVyAPfaGtV rqlak LACY_STRTR : 509- 529: asgsm GKGfAIkPtdgaVfAPisGtI rqilp PTAA_ECOLI : 526- 546: askav GDGvAVkPtdkiVvSPaaGtI vkifn PTAA_KLEPN : 528- 548: askav GDGiAVkPtdniVvAPaaGtV vkifn PTBA_BACSU : 489- 509: sagvm GKGfAIePeegeVvSPvrGsV ttifk PTBA_ECOLI : 504- 524: asgll GKGiAIlPsvgeVrSPvaGrI aslfa PTBA_ERWCH : 510- 530: asgvm GKGiAIrPtqgrLyAPvdGtV aslfk PTGA_BACST : 203- 223: sqkmm GDGfAVmPtdgtVvSPvdGkI invfp PTGA_BACSU : 577- 597: sgkmm GDGfAIlPsegiVvSPvrGkI lnvfp PTGA_ECOLI : 47- 67: aekiv GDGiAIkPtgnkMvAPvdGtI gkife PTGA_HAEIN : 44- 64: sekiv GDGvAVrPignkIvAPvdGvI gkife PTGA_MYCCA : 35- 55: kerml GDGfAInPksndFhAPvsGkL vtafp PTGA_SALTY : 47- 67: aekiv GDGiAIkPtgnkMvAPvdGtI gkife PTSA_PEDPE : 519- 539: saeim GKGaAIvPssdqVvAPadGvI tvtyd PTSA_STRMU : 542- 562: sseam GKGiAIkPsgntVyAPvdGtV qiafd RAFP_PEDPE : 516- 536: aagtl GDGfAIkPsdgrIlAPfdAtV rqvft YZFA_BACSU : 10- 30: sekmm GEGfAIiPsegkVvAPadGeI vsifp G 7: 30.3947 17( 17) G-x-A-[ILV]-x-P-x(4)-[FILMV]-x-[AS]-P-x(2)-[AG]-x-[ILV] Occurences: 17(17) LACY_LACDE : 504- 522: kklgd GfALvPadgkVyAPfaGtV rqlak LACY_STRTR : 511- 529: gsmgk GfAIkPtdgaVfAPisGtI rqilp PTAA_ECOLI : 528- 546: kavgd GvAVkPtdkiVvSPaaGtI vkifn PTAA_KLEPN : 530- 548: kavgd GiAVkPtdniVvAPaaGtV vkifn PTBA_BACSU : 491- 509: gvmgk GfAIePeegeVvSPvrGsV ttifk PTBA_ECOLI : 506- 524: gllgk GiAIlPsvgeVrSPvaGrI aslfa PTBA_ERWCH : 512- 530: gvmgk GiAIrPtqgrLyAPvdGtV aslfk PTGA_BACST : 205- 223: kmmgd GfAVmPtdgtVvSPvdGkI invfp PTGA_BACSU : 579- 597: kmmgd GfAIlPsegiVvSPvrGkI lnvfp PTGA_ECOLI : 49- 67: kivgd GiAIkPtgnkMvAPvdGtI gkife PTGA_HAEIN : 46- 64: kivgd GvAVrPignkIvAPvdGvI gkife PTGA_MYCCA : 37- 55: rmlgd GfAInPksndFhAPvsGkL vtafp PTGA_SALTY : 49- 67: kivgd GiAIkPtgnkMvAPvdGtI gkife PTSA_PEDPE : 521- 539: eimgk GaAIvPssdqVvAPadGvI tvtyd PTSA_STRMU : 544- 562: eamgk GiAIkPsgntVyAPvdGtV qiafd RAFP_PEDPE : 518- 536: gtlgd GfAIkPsdgrIlAPfdAtV rqvft YZFA_BACSU : 12- 30: kmmge GfAIiPsegkVvAPadGeI vsifp H 8: 23.2342 18( 17) L-x(1,2)-H-x-G-[FIL]-[DGS]-x-[ASV]-x(3)-[GI] Occurences: 18(17) LACY_LACDE : 543- 555: hgvlv Li-HlGLGtAklnG tgfvs LACY_STRTR : 550- 562: dgviv Li-HvGIGtVklnG egfis PTAA_ECOLI : 309- 322: fvatl LgiHaGFSfSagaI dyalm PTAA_KLEPN : 309- 322: fiata LgiHaGFSfSagaI dyvlm PTBA_BACSU : 530- 542: qgaei Li-HiGLDtVkleG qwfta PTBA_ECOLI : 545- 557: dgvei Li-HvGIDtVkldG kffsa PTBA_ERWCH : 551- 563: ggaev Li-HvGIDtVrldG ryftp PTGA_BACST : 244- 256: gghei Li-HvGIDtVklnG qgfea PTGA_BACSU : 618- 630: ggrei Li-HfGIDtVslkG egfts PTGA_ECOLI : 87- 100: dsgve LfvHfGIDtVelkG egfkr PTGA_HAEIN : 84- 97: kegve LfvHfGIDtVelkG egftr PTGA_MYCCA : 76- 88: sgvei Ll-HiGLDtVsldG ngfes PTGA_SALTY : 87- 100: dsgie LfvHfGIDtVelkG egfkr PTSA_PEDPE : 560- 572: agaei Li-HlGLDtVnlnG ehftt PTSA_STRMU : 583- 595: ngaei Li-HiGIDtVsmeG kgfeq RAFP_PEDPE : 556- 569: dngiv LliHiGLGtVklrG tgfis RAFP_PEDPE : 557- 569: ngivl Li-HiGLGtVklrG tgfis YZFA_BACSU : 51- 63: ggtei Li-HvGIDtVklnG egfea I 9: 21.5601 17( 17) G-x(1,2)-V-x(2)-G-[DEQ]-x-[ILV]-[AGILV]-x-[FLMV] Occurences: 17(17) LACY_LACDE : 565- 577: syvee GsqVeaGQqILeF wdpai LACY_STRTR : 572- 584: syveq GdrVevGQkLLeF wspii PTAA_ECOLI : 589- 601: rlvee GaqVsaGQpILeM dldyl PTAA_KLEPN : 591- 603: rlvee GtdVkaGEpILeM dldfl PTBA_BACSU : 552- 564: ahike GdkVapGDpLVsF dleqi PTBA_ECOLI : 567- 579: ahvnv GdkVntGDrLIsF dipai PTBA_ERWCH : 573- 585: phvrv GdvVrqGDlLLeF dgpai PTGA_BACST : 266- 278: alvke GdeVkkGQpILrV dldyv PTGA_BACSU : 640- 652: sfvse GdrVepGQkLLeV dldav PTGA_ECOLI : 110- 122: riaee GqrVkvGDtVIeF dlpll PTGA_HAEIN : 107- 119: riaqe GqsVkrGDtVIeF dlall PTGA_MYCCA : 142- 153: eivkm Ge-VkqGDvVAiL k PTGA_SALTY : 110- 122: riaee GqrVkvGDpVIeF dlpll PTSA_PEDPE : 582- 594: tnvqk GdtVhqGDlLGtF diaal PTSA_STRMU : 651- 662: tlass Gt-VavGDsLLeV kk RAFP_PEDPE : 579- 591: syvee GqhVqqGDeLLeF wdpti YZFA_BACSU : 73- 85: ahvts GqaVkqGElLLtF dlnyi J 10: 18.5350 17( 17) D-T-V-x-[LMV]-x-[GV] Occurences: 17(17) LACY_LACDE : 589- 595: qakld DTViVtV inset LACY_STRTR : 596- 602: kngld DTVlVtV tnsek PTAA_ECOLI : 573- 579: vhmgi DTVaLeG kgfkr PTAA_KLEPN : 575- 581: vhmgi DTVaLeG kgfkr PTBA_BACSU : 536- 542: ihigl DTVkLeG qwfta PTBA_ECOLI : 551- 557: ihvgi DTVkLdG kffsa PTBA_ERWCH : 557- 563: ihvgi DTVrLdG ryftp PTGA_BACST : 250- 256: ihvgi DTVkLnG qgfea PTGA_BACSU : 624- 630: ihfgi DTVsLkG egfts PTGA_ECOLI : 94- 100: vhfgi DTVeLkG egfkr PTGA_HAEIN : 91- 97: vhfgi DTVeLkG egftr PTGA_MYCCA : 82- 88: lhigl DTVsLdG ngfes PTGA_SALTY : 94- 100: vhfgi DTVeLkG egfkr PTSA_PEDPE : 566- 572: ihlgl DTVnLnG ehftt PTSA_STRMU : 589- 595: ihigi DTVsMeG kgfeq RAFP_PEDPE : 603- 609: qagld DTViMtV tnste YZFA_BACSU : 57- 63: ihvgi DTVkLnG egfea K 11: 18.2792 17( 17) T-[AGV]-x-L-x(1,2)-G-x(1,2)-F Occurences: 17(17) LACY_LACDE : 550- 558: hlglg TAkLn-GtgF vsyve LACY_STRTR : 557- 565: hvgig TVkLn-GegF isyve PTAA_ECOLI : 574- 582: hmgid TVaLe-GkgF krlve PTAA_KLEPN : 576- 584: hmgid TVaLe-GkgF krlve PTBA_BACSU : 537- 545: higld TVkLe-GqwF tahik PTBA_ECOLI : 552- 559: hvgid TVkLd-Gk-F fsahv PTBA_ECOLI : 552- 560: hvgid TVkLd-GkfF sahvn PTBA_ERWCH : 558- 566: hvgid TVrLd-GryF tphvr PTGA_BACST : 251- 259: hvgid TVkLn-GqgF ealvk PTGA_BACSU : 625- 633: hfgid TVsLk-GegF tsfvs PTGA_ECOLI : 95- 103: hfgid TVeLk-GegF kriae PTGA_HAEIN : 92- 100: hfgid TVeLk-GegF triaq PTGA_MYCCA : 83- 91: higld TVsLd-GngF esfvt PTGA_SALTY : 95- 103: hfgid TVeLk-GegF kriae PTSA_PEDPE : 567- 575: hlgld TVnLn-GehF ttnvq PTSA_STRMU : 310- 318: wlydt TGfLgmGv-F galys RAFP_PEDPE : 564- 572: higlg TVkLr-GtgF isyve YZFA_BACSU : 58- 66: hvgid TVkLn-GegF eahvt L 12: 17.9194 22( 17) L-x(3,4)-G-[AILV]-x(2)-V-x(2,3)-G Occurences: 22(17) LACY_LACDE : 318- 329: ciavm Llgi-GVfsVas-G slals LACY_STRTR : 550- 562: dgviv Lihv-GIgtVklnG egfis PTAA_ECOLI : 558- 571: nhafc LetekGAeiVvhmG idtva PTAA_KLEPN : 560- 573: nhafc LetnnGAeiVvhmG idtva PTBA_BACSU : 530- 542: qgaei Lihi-GLdtVkleG qwfta PTBA_ECOLI : 43- 56: aqaev LkktpGIimVvesG gqfqv PTBA_ECOLI : 545- 557: dgvei Lihv-GIdtVkldG kffsa PTBA_ERWCH : 45- 58: anada LknnpGIimVvesG gqfqv PTBA_ERWCH : 551- 563: ggaev Lihv-GIdtVrldG ryftp PTGA_BACST : 119- 131: vdkdr Lkal-GAagVlevG nnvqa PTGA_BACST : 244- 256: gghei Lihv-GIdtVklnG qgfea PTGA_BACSU : 480- 492: vdkdr Lkql-GAsgVlevG nniqa PTGA_BACSU : 618- 630: ggrei Lihf-GIdtVslkG egfts PTGA_ECOLI : 87- 100: dsgve LfvhfGIdtVelkG egfkr PTGA_HAEIN : 84- 97: kegve LfvhfGIdtVelkG egftr PTGA_MYCCA : 76- 88: sgvei Llhi-GLdtVsldG ngfes PTGA_SALTY : 87- 100: dsgie LfvhfGIdtVelkG egfkr PTSA_PEDPE : 560- 572: agaei Lihl-GLdtVnlnG ehftt PTSA_STRMU : 583- 595: ngaei Lihi-GIdtVsmeG kgfeq RAFP_PEDPE : 556- 569: dngiv LlihiGLgtVklrG tgfis RAFP_PEDPE : 557- 569: ngivl Lihi-GLgtVklrG tgfis YZFA_BACSU : 51- 63: ggtei Lihv-GIdtVklnG egfea M 13: 17.9127 20( 17) L-x(2,4)-G-x-[ADEG]-x-V-x(3)-G Occurences: 20(17) LACY_LACDE : 501- 512: fadkk Lgd--GfAlVpadG kvyap LACY_STRTR : 550- 562: dgviv Lihv-GiGtVklnG egfis PTAA_ECOLI : 558- 571: nhafc LetekGaEiVvhmG idtva PTAA_KLEPN : 560- 573: nhafc LetnnGaEiVvhmG idtva PTBA_BACSU : 530- 542: qgaei Lihi-GlDtVkleG qwfta PTBA_ECOLI : 545- 557: dgvei Lihv-GiDtVkldG kffsa PTBA_ERWCH : 551- 563: ggaev Lihv-GiDtVrldG ryftp PTGA_BACST : 119- 131: vdkdr Lkal-GaAgVlevG nnvqa PTGA_BACST : 244- 256: gghei Lihv-GiDtVklnG qgfea PTGA_BACSU : 618- 630: ggrei Lihf-GiDtVslkG egfts PTGA_ECOLI : 87- 100: dsgve LfvhfGiDtVelkG egfkr PTGA_HAEIN : 84- 97: kegve LfvhfGiDtVelkG egftr PTGA_MYCCA : 76- 88: sgvei Llhi-GlDtVsldG ngfes PTGA_MYCCA : 77- 88: gveil Lhi--GlDtVsldG ngfes PTGA_SALTY : 87- 100: dsgie LfvhfGiDtVelkG egfkr PTSA_PEDPE : 560- 572: agaei Lihl-GlDtVnlnG ehftt PTSA_STRMU : 583- 595: ngaei Lihi-GiDtVsmeG kgfeq RAFP_PEDPE : 556- 569: dngiv LlihiGlGtVklrG tgfis RAFP_PEDPE : 557- 569: ngivl Lihi-GlGtVklrG tgfis YZFA_BACSU : 51- 63: ggtei Lihv-GiDtVklnG egfea N 14: 15.6802 18( 17) V-x-L-x(0,1)-G-x(2,3)-F Occurences: 18(17) LACY_LACDE : 316- 324: yacia VmLlGigvF svasg LACY_STRTR : 323- 331: ygcia VmLgGigiF siagt LACY_STRTR : 558- 565: vgigt VkLnGeg-F isyve PTAA_ECOLI : 575- 582: mgidt VaLeGkg-F krlve PTAA_KLEPN : 577- 584: mgidt VaLeGkg-F krlve PTBA_BACSU : 538- 545: igldt VkLeGqw-F tahik PTBA_ECOLI : 553- 560: vgidt VkLdGkf-F sahvn PTBA_ERWCH : 559- 566: vgidt VrLdGry-F tphvr PTGA_BACST : 252- 259: vgidt VkLnGqg-F ealvk PTGA_BACSU : 626- 633: fgidt VsLkGeg-F tsfvs PTGA_ECOLI : 96- 103: fgidt VeLkGeg-F kriae PTGA_HAEIN : 93- 100: fgidt VeLkGeg-F triaq PTGA_MYCCA : 84- 91: igldt VsLdGng-F esfvt PTGA_SALTY : 96- 103: fgidt VeLkGeg-F kriae PTSA_PEDPE : 568- 575: lgldt VnLnGeh-F ttnvq PTSA_STRMU : 435- 442: lqvva VsL-GsagF lgfls RAFP_PEDPE : 565- 572: iglgt VkLrGtg-F isyve YZFA_BACSU : 59- 66: vgidt VkLnGeg-F eahvt O 15: 15.1802 17( 17) G-x(1,3)-D-x(0,1)-T-x(4)-G Occurences: 17(17) LACY_LACDE : 68- 79: ldpli GnaiDrTesrwG kfkpw LACY_STRTR : 75- 86: idpli GnmiDnTntkyG kfkpw PTAA_ECOLI : 571- 579: ivvhm Gi--D-TvaleG kgfkr PTAA_KLEPN : 573- 581: ivvhm Gi--D-TvaleG kgfkr PTBA_BACSU : 534- 542: ilihi Gl--D-TvkleG qwfta PTBA_ECOLI : 549- 557: ilihv Gi--D-TvkldG kffsa PTBA_ERWCH : 555- 563: vlihv Gi--D-TvrldG ryftp PTGA_BACST : 248- 256: ilihv Gi--D-TvklnG qgfea PTGA_BACSU : 622- 630: ilihf Gi--D-TvslkG egfts PTGA_ECOLI : 92- 100: lfvhf Gi--D-TvelkG egfkr PTGA_HAEIN : 89- 97: lfvhf Gi--D-TvelkG egftr PTGA_MYCCA : 80- 88: illhi Gl--D-TvsldG ngfes PTGA_SALTY : 92- 100: lfvhf Gi--D-TvelkG egfkr PTSA_PEDPE : 564- 572: ilihl Gl--D-TvnlnG ehftt PTSA_STRMU : 587- 595: ilihi Gi--D-TvsmeG kgfeq RAFP_PEDPE : 77- 88: idpfi GnaiDrTknspG hfrpw YZFA_BACSU : 55- 63: ilihv Gi--D-TvklnG egfea P 16: 12.0102 44( 17) V-x(2)-G-x(2,3)-V Occurences: 44(17) LACY_LACDE : 211- 218: ltsit VglGtheV ksalr LACY_LACDE : 562- 568: gfvsy VeeGsq-V eagqq LACY_STRTR : 218- 225: itsia VgiGtreV eskir LACY_STRTR : 569- 575: gfisy VeqGdr-V evgqk PTAA_ECOLI : 525- 531: faska VgdGva-V kptdk PTAA_ECOLI : 568- 575: gaeiv VhmGidtV alegk PTAA_ECOLI : 586- 592: gfkrl VeeGaq-V sagqp PTAA_KLEPN : 527- 533: faska VgdGia-V kptdn PTAA_KLEPN : 570- 577: gaeiv VhmGidtV alegk PTAA_KLEPN : 588- 594: gfkrl VeeGtd-V kagep PTBA_BACSU : 555- 562: kegdk VapGdplV sfdle PTBA_ECOLI : 61- 67: ggqfq VviGnh-V advfl PTBA_ECOLI : 176- 182: pftam VigGal-V hplil PTBA_ECOLI : 564- 570: ffsah VnvGdk-V ntgdr PTBA_ERWCH : 63- 69: ggqfq VvvGnq-V advyq PTBA_ERWCH : 570- 576: yftph VrvGdv-V rqgdl PTGA_BACST : 263- 269: gfeal VkeGde-V kkgqp PTGA_BACST : 313- 320: nkqgp VarGedaV vtir PTGA_BACSU : 146- 152: tlatg VfgGii-V gvlaa PTGA_BACSU : 396- 402: wlvip VglGla-V iyyfg PTGA_BACSU : 637- 643: gftsf VseGdr-V epgqk PTGA_ECOLI : 89- 96: gvelf VhfGidtV elkge PTGA_ECOLI : 113- 119: eegqr VkvGdt-V iefdl PTGA_ECOLI : 156- 163: klsgs VtvGetpV irikk PTGA_HAEIN : 43- 49: fseki VgdGva-V rpign PTGA_HAEIN : 86- 93: gvelf VhfGidtV elkge PTGA_HAEIN : 110- 116: qegqs VkrGdt-V iefdl PTGA_HAEIN : 153- 159: kksge VvaGes-V vlalk PTGA_HAEIN : 153- 160: kksge VvaGesvV lalkk PTGA_MYCCA : 101- 108: tqdqe VnaGdklV tvdlk PTGA_MYCCA : 144- 150: vkmge VkqGdv-V ailk PTGA_SALTY : 89- 96: gielf VhfGidtV elkge PTGA_SALTY : 113- 119: eegqr VkvGdp-V iefdl PTGA_SALTY : 156- 163: klsgs VtvGetpV irikk PTSA_PEDPE : 78- 85: ydali VktGlkeV tpddi PTSA_PEDPE : 426- 433: fhvls VamGpasV igfis PTSA_PEDPE : 579- 585: hfttn VqkGdt-V hqgdl PTSA_PEDPE : 629- 636: lkvtn VqaGeqlV altap PTSA_STRMU : 62- 69: dgqyq ViiGpgdV nfvyd RAFP_PEDPE : 94- 100: hfrpw VvvGgt-V ssiil RAFP_PEDPE : 219- 226: isawg VglGtreV dsdir RAFP_PEDPE : 318- 324: fsrkg VfaGcl-V fmlgg RAFP_PEDPE : 576- 582: gfisy VeeGqh-V qqgde RAFP_PEDPE : 622- 628: mmdwl VkpGqa-V katdn YZFA_BACSU : 70- 76: gfeah VtsGqa-V kqgel Q 17: 12.0102 22( 17) T-V-x(2,3)-G Occurences: 22(17) LACY_LACDE : 210- 214: iltsi TVgl-G thevk LACY_STRTR : 557- 562: hvgig TVklnG egfis PTAA_ECOLI : 210- 214: tnaag TVfh-G dinrf PTAA_ECOLI : 574- 579: hmgid TValeG kgfkr PTAA_KLEPN : 210- 214: tnaag TVfh-G dinrf PTAA_KLEPN : 576- 581: hmgid TValeG kgfkr PTBA_BACSU : 258- 263: pltli TVgplG ailge PTBA_BACSU : 537- 542: higld TVkleG qwfta PTBA_ECOLI : 552- 557: hvgid TVkldG kffsa PTBA_ERWCH : 558- 563: hvgid TVrldG ryftp PTGA_BACST : 251- 256: hvgid TVklnG qgfea PTGA_BACSU : 625- 630: hfgid TVslkG egfts PTGA_ECOLI : 95- 100: hfgid TVelkG egfkr PTGA_HAEIN : 92- 97: hfgid TVelkG egftr PTGA_MYCCA : 83- 88: higld TVsldG ngfes PTGA_SALTY : 95- 100: hfgid TVelkG egfkr PTSA_PEDPE : 567- 572: hlgld TVnlnG ehftt PTSA_PEDPE : 584- 588: vqkgd TVhq-G dllgt PTSA_STRMU : 590- 595: higid TVsmeG kgfeq PTSA_STRMU : 652- 656: lassg TVav-G dslle RAFP_PEDPE : 564- 569: higlg TVklrG tgfis YZFA_BACSU : 58- 63: hvgid TVklnG egfea R 18: 12.0102 19( 17) L-x(1,2)-H-x-G Occurences: 19(17) LACY_LACDE : 543- 547: hgvlv Li-HlG lgtak LACY_STRTR : 550- 554: dgviv Li-HvG igtvk PTAA_ECOLI : 309- 314: fvatl LgiHaG fsfsa PTAA_KLEPN : 309- 314: fiata LgiHaG fsfsa PTBA_BACSU : 277- 282: sgvny LfdHaG lvami PTBA_BACSU : 530- 534: qgaei Li-HiG ldtvk PTBA_ECOLI : 545- 549: dgvei Li-HvG idtvk PTBA_ERWCH : 551- 555: ggaev Li-HvG idtvr PTGA_BACST : 244- 248: gghei Li-HvG idtvk PTGA_BACSU : 618- 622: ggrei Li-HfG idtvs PTGA_ECOLI : 87- 92: dsgve LfvHfG idtve PTGA_HAEIN : 84- 89: kegve LfvHfG idtve PTGA_MYCCA : 76- 80: sgvei Ll-HiG ldtvs PTGA_SALTY : 87- 92: dsgie LfvHfG idtve PTSA_PEDPE : 560- 564: agaei Li-HlG ldtvn PTSA_STRMU : 583- 587: ngaei Li-HiG idtvs RAFP_PEDPE : 556- 561: dngiv LliHiG lgtvk RAFP_PEDPE : 557- 561: ngivl Li-HiG lgtvk YZFA_BACSU : 51- 55: ggtei Li-HvG idtvk S 19: 12.0102 31( 17) G-x(2)-I-x(4,5)-G Occurences: 31(17) LACY_LACDE : 160- 169: tfarv GstIganlvG vvitp LACY_STRTR : 167- 176: tfari GstIganivG vaimp LACY_STRTR : 327- 335: avmlg GigIfsia-G tslpi LACY_STRTR : 511- 519: gsmgk GfaIkptd-G avfap PTAA_ECOLI : 563- 571: letek GaeIvvhm-G idtva PTAA_KLEPN : 565- 573: letnn GaeIvvhm-G idtva PTBA_BACSU : 491- 499: gvmgk GfaIepee-G evvsp PTBA_BACSU : 526- 534: itsdq GaeIlihi-G ldtvk PTBA_ECOLI : 506- 514: gllgk GiaIlpsv-G evrsp PTBA_ECOLI : 541- 549: iesdd GveIlihv-G idtvk PTBA_ERWCH : 512- 520: gvmgk GiaIrptq-G rlyap PTGA_BACST : 13- 22: gmtfs GgvIdfllfG vlpnr PTGA_BACST : 240- 248: iqsag GheIlihv-G idtvk PTGA_BACSU : 78- 86: llfav GvaIglan-G dgvag PTGA_BACSU : 373- 382: gmtfs GglIdyflfG ilpnr PTGA_BACSU : 492- 500: gvlev GnnIqaif-G prsdg PTGA_BACSU : 579- 587: kmmgd GfaIlpse-G ivvsp PTGA_BACSU : 614- 622: lqsdg GreIlihf-G idtvs PTGA_ECOLI : 47- 56: aekiv GdgIaikptG nkmva PTGA_HAEIN : 53- 62: avrpi GnkIvapvdG vigki PTGA_MYCCA : 72- 80: iqtks GveIllhi-G ldtvs PTGA_SALTY : 47- 56: aekiv GdgIaikptG nkmva PTSA_PEDPE : 556- 564: iktta GaeIlihl-G ldtvn PTSA_STRMU : 542- 551: sseam GkgIaikpsG ntvya PTSA_STRMU : 579- 587: iksdn GaeIlihi-G idtvs RAFP_PEDPE : 169- 178: tfarl GstIggglvG vlvmp RAFP_PEDPE : 329- 337: vfmlg GiaIftia-G snlwl RAFP_PEDPE : 395- 404: lidkf GgaIsngvvG qiaii RAFP_PEDPE : 518- 526: gtlgd GfaIkpsd-G rilap YZFA_BACSU : 12- 20: kmmge GfaIipse-G kvvap YZFA_BACSU : 47- 55: fmsag GteIlihv-G idtvk T 20: 11.5102 26( 17) I-x(0,1)-F-x(0,1)-T Occurences: 26(17) LACY_LACDE : 30- 34: lstyf IvFvT thlfn LACY_STRTR : 33- 37: lstyf ImFvT thlfn PTAA_ECOLI : 549- 552: gtivk I-FnT nhafc PTAA_KLEPN : 551- 554: gtvvk I-FnT nhafc PTBA_BACSU : 512- 515: gsvtt I-FkT khaig PTBA_ECOLI : 107- 109: yvisg I-F-T pligl PTBA_ECOLI : 412- 414: fglps I-F-T fmqti PTBA_ECOLI : 424- 427: ipstg IdF-T vwasv PTBA_ERWCH : 110- 112: diiss I-F-T pfvgv PTGA_BACST : 295- 297: ivtpv I-F-T nlqag PTGA_BACSU : 668- 671: slmtp IvF-T nlaeg PTGA_ECOLI : 70- 73: gtigk I-FeT nhafs PTGA_HAEIN : 67- 70: gvigk I-FeT nhafs PTGA_MYCCA : 126- 129: siksp IiF-T nnggk PTGA_MYCCA : 127- 129: ikspi I-F-T nnggk PTGA_SALTY : 70- 73: gtigk I-FeT nhafs PTSA_PEDPE : 364- 368: aatla IfFaT ksqkq PTSA_STRMU : 355- 358: ghgdf I-FvT asman PTSA_STRMU : 373- 377: aatfa IyFlT kdkkm PTSA_STRMU : 564- 568: dgtvq IaFdT ghayg RAFP_PEDPE : 35- 39: lsgyl IiFiT shlfd RAFP_PEDPE : 36- 39: sgyli I-FiT shlfd RAFP_PEDPE : 332- 334: lggia I-F-T iagsn RAFP_PEDPE : 452- 455: ifskq I-FlT eekha YZFA_BACSU : 33- 36: geivs I-FpT khaig YZFA_BACSU : 102- 104: aitpv I-F-T ntsee Number of patterns evaluated by Pratt:2094 Total running time: 4 seconds