------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file PTR2_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PTR2_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CHL1_ARATH 590 DTPT_LACLA 463 PET1_HUMAN 708 PET1_RABIT 707 PET2_RABIT 729 PT2A_ARATH 610 PT2B_ARATH 585 PTR2_CANAL 623 PTR2_YEAST 601 YHIP_ECOLI 489 YJDL_ECOLI 485 Pratt run started at Thu Feb 6 20:55:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 11( 11) A-D-x(2,3)-G-x(2,3)-T 2: 15.6802 12( 11) G-x(4,5)-D-x(3)-G-x(4,5)-I 3: 15.1802 11( 11) F-x(3)-I-x(2,4)-G-x(1,2)-L 4: 15.1802 13( 11) F-x(2,3)-I-x(2,4)-G-x-L 5: 15.1802 11( 11) D-x(3)-G-x(2,3)-T-x(0,2)-I 6: 14.6802 18( 11) I-x(2,4)-G-x(1,3)-G-x(2)-K 7: 12.0102 14( 11) I-x(4)-L-x(1,2)-L 8: 12.0102 18( 11) I-x(2)-G-x(1,2)-L 9: 12.0102 14( 11) F-x(0,1)-S-x(3)-A 10: 12.0102 19( 11) G-x(1,2)-L-x(5)-G 11: 12.0102 16( 11) A-x(3,4)-L-x(4)-G 12: 12.0102 25( 11) A-x(2,3)-L-x(3)-V 13: 12.0102 19( 11) L-x(2,3)-A-x(3)-A 14: 12.0102 20( 11) A-x(3,4)-L-x(2)-A 15: 12.0102 19( 11) S-x-L-x(3,4)-L 16: 12.0102 21( 11) L-x(4,5)-G-x(3)-A 17: 12.0102 17( 11) L-x(5)-G-x(3,4)-A 18: 12.0102 22( 11) L-I-x(2,3)-L 19: 12.0102 20( 11) L-x(1,2)-A-x(2)-L 20: 12.0102 14( 11) L-x(1,2)-T-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 17.8703 11( 11) A-D-x(2,3)-G-x(2,3)-T-x(4)-[AGST] B 2: 17.0890 11( 11) D-x(3)-G-x(2,3)-T-x(0,2)-I-x(4)-[AGILV] C 3: 15.6802 12( 11) G-x(4,5)-D-x(3)-G-x(4,5)-I D 4: 15.1802 11( 11) F-x(3)-I-x(2,4)-G-x(1,2)-L E 5: 15.1802 13( 11) F-x(2,3)-I-x(2,4)-G-x-L F 6: 14.6802 18( 11) I-x(2,4)-G-x(1,3)-G-x(2)-K G 7: 14.2460 13( 11) A-x(3,4)-L-x(2)-A-x(4)-[ILPV] H 8: 13.9337 16( 11) L-x(2,3)-A-x(3)-A-[AGILP] I 9: 13.9189 14( 11) I-x-[AGILV]-G-x(1,2)-L J 10: 12.0102 14( 11) I-x(4)-L-x(1,2)-L K 11: 12.0102 14( 11) F-x(0,1)-S-x(3)-A L 12: 12.0102 19( 11) G-x(1,2)-L-x(5)-G M 13: 12.0102 16( 11) A-x(3,4)-L-x(4)-G N 14: 12.0102 25( 11) A-x(2,3)-L-x(3)-V O 15: 12.0102 19( 11) S-x-L-x(3,4)-L P 16: 12.0102 21( 11) L-x(4,5)-G-x(3)-A Q 17: 12.0102 17( 11) L-x(5)-G-x(3,4)-A R 18: 12.0102 22( 11) L-I-x(2,3)-L S 19: 12.0102 20( 11) L-x(1,2)-A-x(2)-L T 20: 12.0102 14( 11) L-x(1,2)-T-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 17.8703 11( 11) A-D-x(2,3)-G-x(2,3)-T-x(4)-[AGST] Occurences: 11(11) CHL1_ARATH : 92- 106: lggfi ADtflGrylTiaifA aiqat DTPT_LACLA : 49- 63: vggwv ADrllGasrTiflgG ilitl PET1_HUMAN : 74- 88: lgali ADswlGkfkTivslS ivyti PET1_RABIT : 74- 88: lgali ADawlGkfkTivwlS ivyti PET2_RABIT : 104- 118: lgaai ADswlGkfkTiiylS lvnvl PT2A_ARATH : 151- 165: gaali ADqflGrynTivcsA viyfi PT2B_ARATH : 106- 120: igavl ADaywGrywTiacfS giyfi PTR2_CANAL : 390- 404: iifnl ADsglGsveTsligA mkldg PTR2_YEAST : 148- 162: fggyv ADtfwGkynTiccgT aiyia YHIP_ECOLI : 167- 180: lapvi ADrf-GysvTynlcG aglii YJDL_ECOLI : 68- 81: lggwl ADrllGnr-TaviaG allmt B 2: 17.0890 11( 11) D-x(3)-G-x(2,3)-T-x(0,2)-I-x(4)-[AGILV] Occurences: 11(11) CHL1_ARATH : 93- 107: ggfia DtflGrylT--IaifaA iqatg DTPT_LACLA : 50- 64: ggwva DrllGasrT--IflggI litlg PET1_HUMAN : 75- 89: galia DswlGkfkT--IvslsI vytig PET1_RABIT : 75- 89: galia DawlGkfkT--IvwlsI vytig PET2_RABIT : 105- 119: gaaia DswlGkfkT--IiylsL vnvlg PET2_RABIT : 105- 120: gaaia DswlGkfkTi-IylslV nvlgh PT2A_ARATH : 152- 166: aalia DqflGrynT--IvcsaV iyfig PT2B_ARATH : 107- 121: gavla DaywGrywT--IacfsG iyfig PTR2_CANAL : 391- 407: ifnla DsglGsveTslIgamkL dgvpn PTR2_YEAST : 149- 163: ggyva DtfwGkynT--IccgtA iyiag YHIP_ECOLI : 75- 89: ggyvg DhllGtkrT--IvlgaL vxaig YJDL_ECOLI : 69- 84: ggwla DrllGnr-TavIagalL mtlgh C 3: 15.6802 12( 11) G-x(4,5)-D-x(3)-G-x(4,5)-I Occurences: 12(11) CHL1_ARATH : 88- 102: mlcll Ggfia-DtflGrylt-I aifaa DTPT_LACLA : 45- 59: lstiv Ggwva-DrllGasrt-I flggi PET1_HUMAN : 70- 84: ltpil Galia-DswlGkfkt-I vslsi PET1_RABIT : 70- 84: ltpil Galia-DawlGkfkt-I vwlsi PET2_RABIT : 100- 114: ftpil Gaaia-DswlGkfkt-I iylsl PET2_RABIT : 100- 115: ftpil Gaaia-DswlGkfktiI ylslv PT2A_ARATH : 146- 161: yvtpv GaaliaDqflGrynt-I vcsav PT2B_ARATH : 102- 116: ltpli Gavla-DaywGrywt-I acfsg PTR2_CANAL : 150- 164: vfpli Ggylg-DstiGrwka-I qwgvf PTR2_YEAST : 8- 23: nhpsq GsddaqDekqGdfpv-I eeekt PTR2_YEAST : 144- 158: vtpvf Ggyva-DtfwGkynt-I ccgta YHIP_ECOLI : 70- 84: glisi Ggyvg-DhllGtkrt-I vlgal YJDL_ECOLI : 64- 79: vtpil Ggwla-DrllGnrtavI agall D 4: 15.1802 11( 11) F-x(3)-I-x(2,4)-G-x(1,2)-L Occurences: 11(11) CHL1_ARATH : 193- 202: yffnr FffcInv--Gs-L lavtv CHL1_ARATH : 193- 203: yffnr FffcInv--GslL avtvl DTPT_LACLA : 122- 131: tgfni FvvgInm--Gs-L iapli PET1_HUMAN : 166- 175: rffsi FylaIna--Gs-L lstii PET1_HUMAN : 166- 176: rffsi FylaIna--GslL stiit PET1_RABIT : 166- 175: rffsi FylaIna--Gs-L lstii PET1_RABIT : 166- 176: rffsi FylaIna--GslL stiit PET2_RABIT : 187- 196: ryfsg FylaIna--Gs-L istfi PT2A_ARATH : 250- 259: raymi FywtInv--Gs-L svlat PT2B_ARATH : 204- 213: sffnw FyfsIni--Ga-L vsssl PTR2_CANAL : 254- 264: ritnv FylaIni--GafL qiats PTR2_YEAST : 247- 256: nvfmf FyfmInv--Gs-L slmat YHIP_ECOLI : 148- 157: gaftl FymsIni--Gs-L ialsl YJDL_ECOLI : 116- 127: cgygl FksnIscllGe-L ydend E 5: 15.1802 13( 11) F-x(2,3)-I-x(2,4)-G-x-L Occurences: 13(11) CHL1_ARATH : 193- 202: yffnr FffcInv--GsL lavtv CHL1_ARATH : 194- 202: ffnrf Ffc-Inv--GsL lavtv DTPT_LACLA : 87- 96: lfval Fli-Ilgt-GmL kpnis DTPT_LACLA : 122- 131: tgfni FvvgInm--GsL iapli PET1_HUMAN : 166- 175: rffsi FylaIna--GsL lstii PET1_RABIT : 166- 175: rffsi FylaIna--GsL lstii PET2_RABIT : 187- 196: ryfsg FylaIna--GsL istfi PT2A_ARATH : 250- 259: raymi FywtInv--GsL svlat PT2B_ARATH : 204- 213: sffnw FyfsIni--GaL vsssl PTR2_CANAL : 561- 570: nlhwv Fla-Igla-GfL caivm PTR2_YEAST : 247- 256: nvfmf FyfmInv--GsL slmat YHIP_ECOLI : 148- 157: gaftl FymsIni--GsL ialsl YJDL_ECOLI : 116- 127: cgygl FksnIscllGeL ydend F 6: 14.6802 18( 11) I-x(2,4)-G-x(1,3)-G-x(2)-K Occurences: 18(11) CHL1_ARATH : 283- 295: ydvdd IiaaeGsmkGkqK lphte CHL1_ARATH : 284- 295: dvddi Iaae-GsmkGkqK lphte DTPT_LACLA : 89- 97: valfl Iil--Gt--GmlK pnisn PET1_HUMAN : 132- 140: iglal Ial--Gt--GgiK pcvsa PET1_HUMAN : 214- 224: maval IvfvlGs--GmyK kfkpq PET1_RABIT : 132- 140: iglll Ial--Gt--GgiK pcvsa PET1_RABIT : 214- 224: mavsl IvfiiGs--GmyK kfkpq PET2_RABIT : 153- 161: vglcl Ial--Gt--GgiK pcvaa PT2A_ARATH : 198- 208: fvvsl IiiglGt--GgiK snvsp PT2A_ARATH : 198- 208: fvvsl Iii--GlgtGgiK snvsp PT2A_ARATH : 199- 208: vvsli Iigl-Gt--GgiK snvsp PT2A_ARATH : 200- 208: vslii Igl--Gt--GgiK snvsp PT2B_ARATH : 167- 175: gglyl Ial--Gt--GgiK pcvss PTR2_CANAL : 202- 212: cviai ItlsaGs--GlmK pnllp PTR2_YEAST : 194- 205: gfiaa Iili-GiatGmiK anlsv PTR2_YEAST : 195- 205: fiaai Ili--GiatGmiK anlsv YHIP_ECOLI : 115- 123: ialgt Iav--Gn--GlfK anpas YJDL_ECOLI : 108- 117: ylala Iiic-Gy--GlfK snisc YJDL_ECOLI : 109- 117: lalai Iic--Gy--GlfK snisc G 7: 14.2460 13( 11) A-x(3,4)-L-x(2)-A-x(4)-[ILPV] Occurences: 13(11) CHL1_ARATH : 357- 370: fwtvh AqlttLsvAqsetL drsig DTPT_LACLA : 18- 30: ttadn Aglg-LpkAqamaI vsiyg PET1_HUMAN : 620- 632: ksvlq Agwl-LtvAvgniI vliva PET1_HUMAN : 647- 659: fskqw Aeyi-LfaAlllvV cvifa PET1_RABIT : 619- 631: ksvlq Agwl-LtvAvgniI vliva PET1_RABIT : 646- 658: inkqw Aeyi-LfaAlllvV cvifa PET2_RABIT : 647- 659: ksvlq Aawl-LtvAigniI vlvva PT2A_ARATH : 492- 505: fseif AsitgLefAftkaP psmks PT2B_ARATH : 511- 523: rslcs Alal-LtnAlgnyL sslil PTR2_CANAL : 539- 552: flvms AfsaaLslAitpaL kdpnl PTR2_YEAST : 483- 496: fseif AsitgLeyAyskaP asmks YHIP_ECOLI : 116- 129: algti AvgngLfkAnpasL lskcy YJDL_ECOLI : 346- 358: vwlkf Afgl-LlmAcgfmL lafda H 8: 13.9337 16( 11) L-x(2,3)-A-x(3)-A-[AGILP] Occurences: 16(11) CHL1_ARATH : 100- 108: flgry Lti-AifaAI qatgv DTPT_LACLA : 22- 30: naglg Lpk-AqamAI vsiyg DTPT_LACLA : 371- 379: alwlv Lmf-AvqmAG ellvs PET1_HUMAN : 367- 376: avgmv LasmAfvvAA ivqve PET1_RABIT : 367- 376: tigmf LasmAfvaAA ilqve PET2_RABIT : 386- 395: avgmv LaclAfaaAA tveik PET2_RABIT : 612- 621: siawq LpqyAlvtAG evmfs PT2A_ARATH : 497- 505: asitg Lef-AftkAP psmks PT2B_ARATH : 130- 139: igmsa LtlsAsvpAL kpaec PTR2_CANAL : 535- 544: vyalf LvmsAfsaAL slait PTR2_CANAL : 544- 552: afsaa Lsl-AitpAL kdpnl PTR2_YEAST : 488- 496: asitg Ley-AyskAP asmks PTR2_YEAST : 508- 517: imsif LltnAfgsAI gcals PTR2_YEAST : 509- 517: msifl Ltn-AfgsAI gcals YHIP_ECOLI : 399- 407: lfisa Lgl-AmiaAL vpqhl YJDL_ECOLI : 359- 368: cgfml LafdArhaAA dgqas I 9: 13.9189 14( 11) I-x-[AGILV]-G-x(1,2)-L Occurences: 14(11) CHL1_ARATH : 197- 202: rfffc InVGs-L lavtv CHL1_ARATH : 197- 203: rfffc InVGslL avtvl DTPT_LACLA : 59- 65: gasrt IfLGgiL itlgh DTPT_LACLA : 442- 448: tgiig IiVGiiL liikk PET1_HUMAN : 170- 175: ifyla InAGs-L lstii PET1_HUMAN : 170- 176: ifyla InAGslL stiit PET1_RABIT : 170- 175: ifyla InAGs-L lstii PET1_RABIT : 170- 176: ifyla InAGslL stiit PET2_RABIT : 191- 196: gfyla InAGs-L istfi PT2A_ARATH : 254- 259: ifywt InVGs-L svlat PT2B_ARATH : 208- 213: wfyfs InIGa-L vsssl PTR2_CANAL : 258- 264: vfyla InIGafL qiats PTR2_YEAST : 251- 256: ffyfm InVGs-L slmat YHIP_ECOLI : 84- 89: gtkrt IvLGa-L vxaig YHIP_ECOLI : 115- 121: ialgt IaVGngL fkanp YHIP_ECOLI : 152- 157: lfyms InIGs-L ialsl YJDL_ECOLI : 62- 67: vyvtp IlGGw-L adrll J 10: 12.0102 14( 11) I-x(4)-L-x(1,2)-L Occurences: 14(11) CHL1_ARATH : 144- 151: eqasg IqltvLy-L alylt DTPT_LACLA : 4- 12: mra IlvyyLyaL ttadn DTPT_LACLA : 334- 341: rqpst IvkfgLg-L mltga DTPT_LACLA : 451- 458: iilli IkkpiLk-L mgdvr PET1_HUMAN : 339- 347: vimvp IfdavLypL iakcg PET1_HUMAN : 650- 657: qwaey IlfaaLl-L vvcvi PET1_RABIT : 649- 656: qwaey IlfaaLl-L vvcvi PET2_RABIT : 414- 421: pgsqe IllqvLn-L addev PT2A_ARATH : 254- 262: ifywt InvgsLsvL attsl PT2B_ARATH : 125- 132: sgiyf IgmsaLt-L sasvp PTR2_CANAL : 429- 437: iilip IleygLypL lnkfk PTR2_YEAST : 251- 258: ffyfm InvgsLs-L matte YHIP_ECOLI : 152- 160: lfyms InigsLiaL slapv YJDL_ECOLI : 79- 87: nrtav IagalLmtL ghvvl K 11: 12.0102 14( 11) F-x(0,1)-S-x(3)-A Occurences: 14(11) CHL1_ARATH : 302- 308: phteq FrSldkA airdq CHL1_ARATH : 429- 435: glglf FgSmamA vaalv DTPT_LACLA : 399- 405: lapva FqSqmmA mwfla PET1_HUMAN : 605- 610: vtgle F-SysqA psnmk PET1_HUMAN : 642- 647: agagq F-SkqwA eyilf PET1_RABIT : 604- 609: itgle F-SysqA psnmk PET2_RABIT : 632- 637: vtgle F-SysqA pssmk PT2A_ARATH : 487- 492: yvlia F-SeifA sitgl PT2B_ARATH : 360- 365: asgii F-SavyA qmstm PTR2_CANAL : 180- 186: hlffi FaSipqA ienan PTR2_YEAST : 478- 483: yvlis F-SeifA sitgl YHIP_ECOLI : 47- 52: vkqlg F-SqeqA fvtfg YJDL_ECOLI : 100- 105: dtnst F-SlylA laiii YJDL_ECOLI : 139- 144: rrdgg F-SllyA agnig L 12: 12.0102 19( 11) G-x(1,2)-L-x(5)-G Occurences: 19(11) CHL1_ARATH : 52- 61: ttlgi GvnLvtyltG tmhlg CHL1_ARATH : 501- 510: kgmst GllLstlalG fffss DTPT_LACLA : 379- 387: avqma Ge-LlvspvG lsvst PET1_HUMAN : 128- 137: vlsli GlaLialgtG gikpc PET1_HUMAN : 621- 629: svlqa Gw-LltvavG niivl PET1_RABIT : 128- 137: avcmi GllLialgtG gikpc PET1_RABIT : 620- 628: svlqa Gw-LltvavG niivl PET2_RABIT : 149- 158: vlslv GlcLialgtG gikpc PT2A_ARATH : 120- 128: kdatp Ga-LnlgetG adgls PT2B_ARATH : 102- 111: ltpli GavLadaywG rywti PT2B_ARATH : 162- 170: yamff Gg-LylialG tggik PT2B_ARATH : 163- 172: amffg GlyLialgtG gikpc PTR2_CANAL : 150- 159: vfpli GgyLgdstiG rwkai PTR2_CANAL : 151- 159: fplig Gy-LgdstiG rwkai PTR2_YEAST : 117- 125: ndspk Gv-LslnsqG atgls YHIP_ECOLI : 359- 367: fmcsl Gf-LtaaxaG mwfad YHIP_ECOLI : 392- 400: lfqsl Ge-LfisalG lamia YJDL_ECOLI : 64- 73: vtpil GgwLadrllG nrtav YJDL_ECOLI : 65- 73: tpilg Gw-LadrllG nrtav M 13: 12.0102 16( 11) A-x(3,4)-L-x(4)-G Occurences: 16(11) CHL1_ARATH : 365- 375: ttlsv AqsetLdrsiG sfeip DTPT_LACLA : 36- 45: vsiyg Alvy-LstivG gwvad DTPT_LACLA : 378- 387: favqm Agel-LvspvG lsvst PET1_HUMAN : 61- 70: yhtfv Alcy-LtpilG aliad PET1_HUMAN : 342- 352: vpifd AvlypLiakcG fnfts PET1_HUMAN : 620- 629: ksvlq Agwl-LtvavG niivl PET1_RABIT : 61- 70: yhtfv Alcy-LtpilG aliad PET1_RABIT : 342- 352: vpimd AvvypLiakcG lnfts PET1_RABIT : 619- 628: ksvlq Agwl-LtvavG niivl PET2_RABIT : 647- 656: ksvlq Aawl-LtvaiG niivl PT2A_ARATH : 263- 272: slsvl Atts-LestkG fvyay PT2B_ARATH : 511- 520: rslcs Alal-LtnalG nylss PTR2_CANAL : 200- 209: glcvi Aiit-LsagsG lmkpn PTR2_YEAST : 260- 269: slslm Atte-LeyhkG fwaay YHIP_ECOLI : 61- 71: fgafa AlvygLisigG yvgdh YJDL_ECOLI : 346- 355: vwlkf Afgl-LlmacG fmlla N 14: 12.0102 25( 11) A-x(2,3)-L-x(3)-V Occurences: 25(11) CHL1_ARATH : 227- 234: gicaf Aiv-LalsV flagt CHL1_ARATH : 347- 355: mlpiw AtciLfwtV haqlt CHL1_ARATH : 553- 561: vavlv AlnfLiflV fskwy DTPT_LACLA : 36- 44: vsiyg AlvyLstiV ggwva DTPT_LACLA : 378- 386: favqm AgelLvspV glsvs PET1_HUMAN : 196- 204: ihskq AcypLafgV paalm PET1_HUMAN : 210- 217: paalm Ava-LivfV lgsgm PET1_HUMAN : 620- 628: ksvlq AgwlLtvaV gniiv PET1_HUMAN : 653- 661: eyilf AallLvvcV ifaim PET1_HUMAN : 654- 661: yilfa All-LvvcV ifaim PET1_RABIT : 619- 627: ksvlq AgwlLtvaV gniiv PET1_RABIT : 652- 660: eyilf AallLvvcV ifaim PET1_RABIT : 653- 660: yilfa All-LvvcV ifaim PET2_RABIT : 132- 140: iksls AfpiLggkV vhtvl PT2A_ARATH : 276- 283: kgfvy Ayl-LplcV fvipl PT2A_ARATH : 333- 341: klnhl AlllLeryV kdqwd PT2B_ARATH : 129- 136: figms Alt-LsasV palkp PTR2_CANAL : 190- 198: qaien AnagLglcV iaiit PTR2_CANAL : 464- 472: sfsqi AgfvLqkqV yeqsp PTR2_CANAL : 567- 574: laigl Agf-LcaiV mlaqf PTR2_YEAST : 438- 445: famtw Aav-LqsfV ykagp YHIP_ECOLI : 426- 434: fltqx AaflLggyV atfta YHIP_ECOLI : 427- 434: ltqxa Afl-LggyV atfta YJDL_ECOLI : 317- 324: svnai Avm-LagvV lawla YJDL_ECOLI : 420- 427: atgav Anw-LagvV aqqtt O 15: 12.0102 19( 11) S-x-L-x(3,4)-L Occurences: 19(11) CHL1_ARATH : 201- 208: cinvg SlLavtvL vyvqd DTPT_LACLA : 80- 86: tpfgl SsLfva-L fliil DTPT_LACLA : 347- 353: mltga SyLimt-L pglln DTPT_LACLA : 365- 371: tsgra SaLwlv-L mfavq PET1_HUMAN : 616- 623: psnmk SvLqagwL ltvav PET1_RABIT : 615- 622: psnmk SvLqagwL ltvav PET2_RABIT : 643- 650: pssmk SvLqaawL ltvai PT2A_ARATH : 212- 219: iksnv SpLmaeqL pkipp PT2A_ARATH : 260- 267: nvgsl SvLattsL estkg PT2A_ARATH : 317- 324: lvkcs SlLlktnL iskkl PT2B_ARATH : 524- 530: lgnyl SsLilt-L vtyft PTR2_CANAL : 133- 139: glqaa SaLtnl-L tflay PTR2_CANAL : 208- 215: tlsag SgLmkpnL lplvl PTR2_YEAST : 209- 216: ikanl SvLiadqL pkrkp YHIP_ECOLI : 101- 107: fmtgm SlLkpd-L ifial YHIP_ECOLI : 212- 218: rpmsf SkLlyv-L lgsvv YHIP_ECOLI : 212- 219: rpmsf SkLlyvlL gsvvm YJDL_ECOLI : 121- 127: fksni ScLlge-L ydend YJDL_ECOLI : 213- 219: alpvw SwLvvm-L clapv YJDL_ECOLI : 337- 343: esrgn StLrvw-L kfafg P 16: 12.0102 21( 11) L-x(4,5)-G-x(3)-A Occurences: 21(11) CHL1_ARATH : 155- 165: ylaly LtalgtGgvkA svsgf DTPT_LACLA : 40- 49: galvy Lstiv-GgwvA drllg DTPT_LACLA : 356- 366: mtlpg LlngtsGrasA lwlvl DTPT_LACLA : 357- 366: tlpgl Lngts-GrasA lwlvl PET1_HUMAN : 65- 74: valcy Ltpil-GaliA dswlg PET1_HUMAN : 358- 368: fnfts LkkmavGmvlA smafv PET1_RABIT : 65- 74: valcy Ltpil-GaliA dawlg PET1_RABIT : 358- 368: lnfts LkkmtiGmflA smafv PET2_RABIT : 377- 387: infts LrkmavGmvlA clafa PT2A_ARATH : 267- 276: latts Lestk-GfvyA yllpl PT2A_ARATH : 431- 440: pfkpi Lritl-GfmfA tasmi PT2B_ARATH : 38- 47: ngnpp Lkekt-GnwkA cpfil PT2B_ARATH : 97- 106: qgtcy Ltpli-GavlA daywg PTR2_CANAL : 153- 163: liggy LgdstiGrwkA iqwgv PTR2_CANAL : 562- 572: lhwvf LaiglaGflcA ivmla PTR2_YEAST : 2- 12: m LnhpsqGsddA qdekq PTR2_YEAST : 196- 206: iaaii LigiatGmikA nlsvl PTR2_YEAST : 264- 273: matte Leyhk-GfwaA yllpf YHIP_ECOLI : 361- 371: cslgf LtaaxaGmwfA dxqgl YJDL_ECOLI : 67- 77: ilggw LadrllGnrtA viaga YJDL_ECOLI : 230- 240: fftll LendwsGyllA ivcli Q 17: 12.0102 17( 11) L-x(5)-G-x(3,4)-A Occurences: 17(11) CHL1_ARATH : 155- 165: ylaly LtalgtGgvk-A svsgf DTPT_LACLA : 353- 364: ylimt LpgllnGtsgrA salwl DTPT_LACLA : 356- 366: mtlpg LlngtsGras-A lwlvl PET1_HUMAN : 358- 368: fnfts LkkmavGmvl-A smafv PET1_RABIT : 358- 368: lnfts LkkmtiGmfl-A smafv PET2_RABIT : 377- 387: infts LrkmavGmvl-A clafa PT2A_ARATH : 539- 550: avnpk LtwmytGiavtA fiagi PT2B_ARATH : 387- 398: igsfq LppaalGtfdtA sviiw PTR2_CANAL : 153- 163: liggy LgdstiGrwk-A iqwgv PTR2_CANAL : 562- 572: lhwvf LaiglaGflc-A ivmla PTR2_YEAST : 2- 12: m LnhpsqGsdd-A qdekq PTR2_YEAST : 196- 206: iaaii LigiatGmik-A nlsvl YHIP_ECOLI : 361- 371: cslgf LtaaxaGmwf-A dxqgl YHIP_ECOLI : 394- 405: qslge LfisalGlamiA alvpq YJDL_ECOLI : 67- 77: ilggw LadrllGnrt-A viaga YJDL_ECOLI : 230- 240: fftll LendwsGyll-A ivcli YJDL_ECOLI : 349- 360: kfafg LllmacGfmllA fdarh R 18: 12.0102 22( 11) L-I-x(2,3)-L Occurences: 22(11) CHL1_ARATH : 465- 470: lgfyl LIpqyL ivgig DTPT_LACLA : 131- 135: inmgs LIap-L ivgtv DTPT_LACLA : 199- 203: tltiv LIva-L igffl DTPT_LACLA : 203- 208: vliva LIgffL iyqas DTPT_LACLA : 349- 353: tgasy LImt-L pglln PET1_HUMAN : 126- 131: hvvls LIglaL ialgt PET1_HUMAN : 213- 218: lmava LIvfvL gsgmy PET1_RABIT : 332- 336: tvnti LIii-L vpimd PET2_RABIT : 353- 358: npllv LIfipL fdlvi PT2A_ARATH : 197- 202: gfvvs LIiigL gtggi PT2A_ARATH : 324- 329: llktn LIskkL nhlal PT2B_ARATH : 11- 16: eearp LIeegL ilqev PT2B_ARATH : 69- 73: giagn LIty-L ttklh PT2B_ARATH : 100- 105: cyltp LIgavL adayw PT2B_ARATH : 526- 530: nylss LIlt-L vtyft PTR2_CANAL : 148- 153: ayvfp LIggyL gdsti PTR2_CANAL : 426- 430: ltiii LIpi-L eygly PTR2_YEAST : 211- 216: anlsv LIadqL pkrkp YHIP_ECOLI : 107- 112: llkpd LIfiaL gtiav YHIP_ECOLI : 157- 162: inigs LIalsL apvia YHIP_ECOLI : 183- 187: lcgag LIia-L lvyia YHIP_ECOLI : 183- 188: lcgag LIialL vyiac YJDL_ECOLI : 31- 35: gmral LIly-L thqlg S 19: 12.0102 20( 11) L-x(1,2)-A-x(2)-L Occurences: 20(11) CHL1_ARATH : 149- 155: iqltv LylAlyL talgt DTPT_LACLA : 82- 88: fglss LfvAlfL iilgt DTPT_LACLA : 343- 349: glglm LtgAsyL imtlp PET1_HUMAN : 208- 213: gvpaa Lm-AvaL ivfvl PET1_HUMAN : 618- 623: nmksv Lq-AgwL ltvav PET1_HUMAN : 651- 656: waeyi Lf-AalL lvvcv PET1_HUMAN : 651- 657: waeyi LfaAllL vvcvi PET1_RABIT : 208- 213: gipai Lm-AvsL ivfii PET1_RABIT : 617- 622: nmksv Lq-AgwL ltvav PET1_RABIT : 650- 655: waeyi Lf-AalL lvvcv PET1_RABIT : 650- 656: waeyi LfaAllL vvcvi PET2_RABIT : 645- 650: smksv Lq-AawL ltvai PET2_RABIT : 645- 651: smksv LqaAwlL tvaig PT2A_ARATH : 214- 219: snvsp Lm-AeqL pkipp PT2B_ARATH : 453- 459: veiir LhmAndL glves PT2B_ARATH : 508- 514: damrs LcsAlaL ltnal PTR2_CANAL : 129- 135: algkg LqaAsaL tnllt PTR2_CANAL : 401- 407: svets LigAmkL dgvpn PTR2_CANAL : 529- 535: palks LvyAlfL vmsaf PTR2_YEAST : 211- 216: anlsv Li-AdqL pkrkp YHIP_ECOLI : 141- 147: pkdpr LdgAftL fymsi YHIP_ECOLI : 157- 162: inigs Li-AlsL apvia YJDL_ECOLI : 343- 349: tlrvw LkfAfgL llmac T 20: 12.0102 14( 11) L-x(1,2)-T-G Occurences: 14(11) CHL1_ARATH : 158- 161: lylta Lg-TG gvkas CHL1_ARATH : 478- 482: gigea LiyTG qldff DTPT_LACLA : 91- 94: lflii Lg-TG mlkpn DTPT_LACLA : 341- 345: kfglg LmlTG asyli PET1_HUMAN : 134- 137: lalia Lg-TG gikpc PET1_RABIT : 134- 137: lllia Lg-TG gikpc PET2_RABIT : 155- 158: lclia Lg-TG gikpc PT2A_ARATH : 124- 128: pgaln LgeTG adgls PT2A_ARATH : 202- 205: liiig Lg-TG giksn PT2B_ARATH : 169- 172: lylia Lg-TG gikpc PTR2_CANAL : 233- 236: dmvkv Lp-TG esiil PTR2_YEAST : 533- 536: pkftw Lf-TG lavac YHIP_ECOLI : 260- 264: rqafk LdkTG rnkmf YJDL_ECOLI : 414- 417: tgiym La-TG avanw Number of patterns evaluated by Pratt:16248 Total running time: 18 seconds