------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file PTPS_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PTPS_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PTPS_HUMAN 145 PTPS_RAT 144 PTPS_SALSA 103 Pratt run started at Thu Feb 6 20:55:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 98.0812 3( 3) N-V-A-V-Y-I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 2: 94.4112 5( 3) V-x(4,5)-N-V-x-V-x(0,2)-Y-I-x(2)-N-x(4)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 3: 94.4112 3( 3) V-M-N-x(4)-K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V-x(0,1)-V 4: 94.4112 3( 3) T-x(1,2)-V-M-N-x(4)-K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V 5: 93.9112 3( 3) V-A-V-Y-I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 6: 93.9112 3( 3) P-x(2,4)-V-M-N-x(4)-K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V 7: 90.7411 4( 3) V-x(0,2)-A-V-Y-I-x(2)-N-x(4)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 8: 90.7411 4( 3) N-V-x-V-x(0,2)-Y-I-x(2)-N-x(4)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 9: 90.7411 4( 3) N-x(1,3)-A-V-Y-I-x(2)-N-x(4)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 10: 90.2411 3( 3) M-N-x(4)-K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V-x(0,1)-V 11: 89.7411 3( 3) A-V-Y-I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 12: 86.5711 4( 3) V-x-V-x(0,2)-Y-I-x(2)-N-x(4)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 13: 85.5711 3( 3) V-Y-I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 14: 82.4010 3( 3) N-x(4)-K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V 15: 81.9010 3( 3) K-x(3)-E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V-x(0,1)-V 16: 81.4010 3( 3) Y-I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 17: 77.7310 3( 3) E-E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V-x(0,1)-V 18: 77.2310 3( 3) I-x(2)-N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E 19: 73.5609 3( 3) E-x-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-x-V-x(0,1)-V 20: 73.0609 3( 3) N-x(1,3)-Q-x(0,2)-L-P-x(3)-L-Y-x-V-K-x(2)-E-T-D-x-N-I-V-V-Y-x-G-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 138.5401 3( 3) T-x(1,2)-V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV]-x-[DEQ] B 2: 136.1626 3( 3) V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL] C 3: 135.4465 3( 3) P-x(2,4)-V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV] D 4: 135.1631 3( 3) M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ] E 5: 130.9750 3( 3) K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V F 6: 129.5791 5( 3) V-x(4,5)-N-V-[AN]-V-x(0,2)-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E G 7: 127.8101 3( 3) N-V-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E H 8: 126.6580 3( 3) N-x(4)-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV]-x-[DEQ]-x-[LP]-[AQ] I 9: 123.1650 3( 3) N-V-A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E J 10: 123.0865 3( 3) E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V-x-[AIV] K 11: 122.6400 4( 3) V-x(0,2)-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E L 12: 122.6400 4( 3) N-x(1,3)-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E M 13: 122.1051 3( 3) E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V-x-[AIV]-x(3)-[DV] N 14: 118.9950 3( 3) V-A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E O 15: 118.4700 4( 3) V-x-V-x(0,2)-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E P 16: 114.8249 3( 3) A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Q 17: 110.6549 3( 3) V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E R 18: 106.4848 3( 3) Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E S 19: 102.3148 3( 3) I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E T 20: 94.9741 3( 3) N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 138.5401 3( 3) T-x(1,2)-V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV]-x-[DEQ] Occurences: 3(3) PTPS_HUMAN : 67- 116: eidpa TgmVMNlADlKKYmEEAImqPLDHKNLDmDVPYFADVVSTTenvAVyIwD nlqkv PTPS_RAT : 66- 115: eidpv TgmVMNlTDlKEYmEEAImkPLDHKNLDlDVPYFADVVSTTenvAVyIwE nlqrl PTPS_SALSA : 33- 79: rlhsp Tl-VMNxTNxKEHxEEVI--PLDHKNLDkDVPYFANVNVAVyixDNmVkQ lpanl B 2: 136.1626 3( 3) V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL] Occurences: 3(3) PTPS_HUMAN : 70- 118: patgm VMNlADlKKYmEEAImqPLDHKNLDmDVPYFADV-VSTtenVAVyiwdNL qkvlp PTPS_RAT : 69- 117: pvtgm VMNlTDlKEYmEEAImkPLDHKNLDlDVPYFADV-VSTtenVAVyiweNL qrllp PTPS_SALSA : 35- 82: hsptl VMNxTNxKEHxEEVI--PLDHKNLDkDVPYFANVnVAVyixDNMvkqlPA nllye C 3: 135.4465 3( 3) P-x(2,4)-V-M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV] Occurences: 3(3) PTPS_HUMAN : 65- 114: hgeid PatgmVMNlADlKKYmEEAImqPLDHKNLDmDVPYFADVVSTTenvAVyI wdnlq PTPS_RAT : 64- 113: hgeid PvtgmVMNlTDlKEYmEEAImkPLDHKNLDlDVPYFADVVSTTenvAVyI wenlq PTPS_SALSA : 32- 77: hrlhs Ptl--VMNxTNxKEHxEEVI--PLDHKNLDkDVPYFANVNVAVyixDNmV kqlpa D 4: 135.1631 3( 3) M-N-x-[AT]-[DN]-x-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ] Occurences: 3(3) PTPS_HUMAN : 71- 119: atgmv MNlADlKKYmEEAImqPLDHKNLDmDVPYFADV-VSTtenVAVyiwdNLQ kvlpv PTPS_RAT : 70- 118: vtgmv MNlTDlKEYmEEAImkPLDHKNLDlDVPYFADV-VSTtenVAVyiweNLQ rllpv PTPS_SALSA : 36- 83: sptlv MNxTNxKEHxEEVI--PLDHKNLDkDVPYFANVnVAVyixDNMvkqlPAN llyev E 5: 130.9750 3( 3) K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V Occurences: 3(3) PTPS_HUMAN : 77- 124: nladl KKYmEEAImqPLDHKNLDmDVPYFADV-VSTtenVAVyiwdNLQkVlPV gvlyk PTPS_RAT : 76- 123: nltdl KEYmEEAImkPLDHKNLDlDVPYFADV-VSTtenVAVyiweNLQrLlPV galyk PTPS_SALSA : 42- 88: nxtnx KEHxEEVI--PLDHKNLDkDVPYFANVnVAVyixDNMvkqlPANlLyEV kihet F 6: 129.5791 5( 3) V-x(4,5)-N-V-[AN]-V-x(0,2)-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 5(3) PTPS_HUMAN : 103- 145: pyfad VvstteNVAV--YIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_HUMAN : 104- 145: yfadv Vstte-NVAV--YIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 102- 144: pyfad VvstteNVAV--YIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_RAT : 103- 144: yfadv Vstte-NVAV--YIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 60- 103: nldkd Vpyfa-NVNVavYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE G 7: 127.8101 3( 3) N-V-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 109- 145: vstte NVAVYIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 108- 144: vstte NVAVYIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 67- 103: yfanv NVAVYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE H 8: 126.6580 3( 3) N-x(4)-K-[EK]-[HY]-x-E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-[NV]-[SV]-[AT]-[TV]-x(3)-[AD]-[NV]-x-[IV]-x-[DEQ]-x-[LP]-[AQ] Occurences: 3(3) PTPS_HUMAN : 72- 119: tgmvm NladlKKYmEEAImqPLDHKNLDmDVPYFADVVSTTenvAVyIwDnLQ kvlpv PTPS_RAT : 71- 118: tgmvm NltdlKEYmEEAImkPLDHKNLDlDVPYFADVVSTTenvAVyIwEnLQ rllpv PTPS_SALSA : 37- 82: ptlvm NxtnxKEHxEEVI--PLDHKNLDkDVPYFANVNVAVyixDNmVkQlPA nllye I 9: 123.1650 3( 3) N-V-A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 109- 145: vstte NVAVYIwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 108- 144: vstte NVAVYIwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 67- 103: yfanv NVAVYIxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE J 10: 123.0865 3( 3) E-E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V-x-[AIV] Occurences: 3(3) PTPS_HUMAN : 81- 126: lkkym EEAImqPLDHKNLDmDVPYFADV-VSTtenVAVyiwdNLQkVlPVgV lykvk PTPS_RAT : 80- 125: lkeym EEAImkPLDHKNLDlDVPYFADV-VSTtenVAVyiweNLQrLlPVgA lykvk PTPS_SALSA : 46- 90: xkehx EEVI--PLDHKNLDkDVPYFANVnVAVyixDNMvkqlPANlLyEVkI hetdk K 11: 122.6400 4( 3) V-x(0,2)-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 4(3) PTPS_HUMAN : 110- 145: stten V--AVYIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 109- 144: stten V--AVYIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 66- 103: pyfan VnvAVYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE PTPS_SALSA : 68- 103: fanvn V--AVYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE L 12: 122.6400 4( 3) N-x(1,3)-A-V-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 4(3) PTPS_HUMAN : 109- 145: vstte Nv--AVYIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 108- 144: vstte Nv--AVYIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 65- 103: vpyfa NvnvAVYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE PTPS_SALSA : 67- 103: yfanv Nv--AVYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE M 13: 122.1051 3( 3) E-[AV]-I-x(0,2)-P-L-D-H-K-N-L-D-x-D-V-P-Y-F-A-[DN]-V-x(0,1)-V-[AS]-[TV]-x(3)-[DV]-[AN]-[MV]-x(4)-[NP]-[AL]-[NQ]-x-[LV]-x-[EP]-V-x-[AIV]-x(3)-[DV] Occurences: 3(3) PTPS_HUMAN : 82- 130: kkyme EAImqPLDHKNLDmDVPYFADV-VSTtenVAVyiwdNLQkVlPVgVlykV kvyet PTPS_RAT : 81- 129: keyme EAImkPLDHKNLDlDVPYFADV-VSTtenVAVyiweNLQrLlPVgAlykV kvyet PTPS_SALSA : 47- 94: kehxe EVI--PLDHKNLDkDVPYFANVnVAVyixDNMvkqlPANlLyEVkIhetD knivv N 14: 118.9950 3( 3) V-A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 110- 145: stten VAVYIwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 109- 144: stten VAVYIwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 68- 103: fanvn VAVYIxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE O 15: 118.4700 4( 3) V-x-V-x(0,2)-Y-I-x-[DE]-N-[LM]-x-[KR]-x-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 4(3) PTPS_HUMAN : 110- 145: stten VaV--YIwDNLqKvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 109- 144: stten VaV--YIwENLqRlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 66- 103: pyfan VnVavYIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE PTPS_SALSA : 68- 103: fanvn VaV--YIxDNMvKqLPANLLYEVKIHETDkNIVVYRGE P 16: 114.8249 3( 3) A-V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 111- 145: ttenv AVYIwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 110- 144: ttenv AVYIwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 69- 103: anvnv AVYIxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE Q 17: 110.6549 3( 3) V-Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 112- 145: tenva VYIwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 111- 144: tenva VYIwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 70- 103: nvnva VYIxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE R 18: 106.4848 3( 3) Y-I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 113- 145: envav YIwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 112- 144: envav YIwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 71- 103: vnvav YIxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE S 19: 102.3148 3( 3) I-x-[DE]-N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 114- 145: nvavy IwDNl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 113- 144: nvavy IwENl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 72- 103: nvavy IxDNmvkQ--LPANLLYEVKIHETDkNIVVYRGE T 20: 94.9741 3( 3) N-x(1,3)-Q-x(0,2)-L-P-[AV]-[GN]-[ALV]-L-Y-[EK]-V-K-[IV]-[HY]-E-T-D-x-N-I-V-V-Y-[KR]-G-E Occurences: 3(3) PTPS_HUMAN : 117- 145: vyiwd Nl--QkvLPVGVLYKVKVYETDnNIVVYKGE PTPS_RAT : 116- 144: vyiwe Nl--QrlLPVGALYKVKVYETDnNIVVYKGE PTPS_SALSA : 75- 103: vyixd NmvkQ--LPANLLYEVKIHETDkNIVVYRGE Number of patterns evaluated by Pratt:4729 Total running time: 1 seconds