------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file PTN_MK_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PTN_MK_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MK_CHICK 142 MK_HUMAN 143 MK_MOUSE 140 PTN_BOVIN 168 PTN_CHICK 136 PTN_HUMAN 168 PTN_RAT 168 Pratt run started at Thu Feb 6 20:55:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 112.5914 7( 7) C-x(2)-P-C-N-W-K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C 2: 111.5914 7( 7) P-C-N-W-K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V 3: 107.4213 7( 7) C-N-W-K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V 4: 103.2513 7( 7) N-W-K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V 5: 102.2513 7( 7) K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C 6: 102.2513 7( 7) K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P 7: 102.2513 7( 7) W-K-K-x-F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K 8: 98.0812 7( 7) F-G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C 9: 93.9112 7( 7) G-A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C 10: 89.7411 7( 7) K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 11: 89.7411 7( 7) C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K 12: 89.7411 7( 7) A-x-C-K-Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C 13: 85.5711 7( 7) Y-x-F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 14: 81.4010 7( 7) F-x(2)-W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 15: 77.2310 7( 7) W-G-x-C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 16: 68.8909 7( 7) C-x(3)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 17: 68.8909 7( 7) G-x(5)-T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 18: 64.7208 7( 7) T-x(2)-K-x-R-x-G-x-L-K-x-A-x(2)-N-A-x-C-x(3,5)-V-x(1,3)-K-P-C-x(4)-K-x-K 19: 61.5508 11( 7) K-x(3,4)-S-x-C-x(2)-W-x-W-x(2)-C-x-P-x(3)-D-C-G-x-G-x-R-E-G-x(2,3)-G 20: 61.5508 8( 7) K-x(4,5)-S-x-C-x(2)-W-x-W-x(2)-C-x-P-x(3)-D-C-G-x-G-x-R-E-G-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 163.4626 7( 7) C-[KR]-[IV]-P-C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-[EQ]-[EK]-[TV] B 2: 146.4244 7( 7) P-C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V C 3: 145.4298 7( 7) C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-[ST] D 4: 141.2597 7( 7) N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-[ST] E 5: 137.0843 7( 7) K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C F 6: 137.0843 7( 7) K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P G 7: 137.0843 7( 7) W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K H 8: 136.1147 7( 7) F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] I 9: 131.9446 7( 7) G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] J 10: 128.7442 7( 7) K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K K 11: 127.7746 7( 7) A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] L 12: 127.2230 7( 7) K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K M 13: 124.6040 7( 7) C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K N 14: 123.0530 7( 7) Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K O 15: 121.5079 7( 7) F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT] P 16: 114.7169 7( 7) W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK] Q 17: 110.5468 7( 7) G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK] R 18: 107.9168 7( 7) C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK]-x(2)-K S 19: 105.3548 7( 7) T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK]-x(2)-K-x-K-[DK] T 20: 104.7234 7( 7) K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 163.4626 7( 7) C-[KR]-[IV]-P-C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-[EQ]-[EK]-[TV] Occurences: 7(7) MK_CHICK : 69- 118: srklk CKIPCNWKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECEEV vyvsk MK_HUMAN : 70- 119: tqrir CRVPCNWKKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCQET irvtk MK_MOUSE : 67- 116: tqrvh CKVPCNWKKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCQET irvtk PTN_BOVIN : 85- 134: mktqr CKIPCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCQKT vtisk PTN_CHICK : 53- 102: tktqk CKIPCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCQKT vtisk PTN_HUMAN : 85- 134: mktqr CKIPCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECQKT vtisk PTN_RAT : 85- 134: mktqr CKIPCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCQKT vtisk B 2: 146.4244 7( 7) P-C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V Occurences: 7(7) MK_CHICK : 72- 119: lkcki PCNWKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--V yvskp MK_CHICK : 72- 121: lkcki PCNWKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyV skpct MK_HUMAN : 73- 122: ircrv PCNWKKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirV tkpct MK_MOUSE : 70- 119: vhckv PCNWKKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirV tkpct PTN_BOVIN : 88- 135: qrcki PCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--V tiskp PTN_CHICK : 56- 103: qkcki PCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--V tiskp PTN_HUMAN : 88- 135: qrcki PCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--V tiskp PTN_RAT : 88- 135: qrcki PCNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--V tiskp C 3: 145.4298 7( 7) C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-[ST] Occurences: 7(7) MK_CHICK : 73- 122: kckip CNWKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVS kpcta MK_HUMAN : 74- 123: rcrvp CNWKKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVT kpctp MK_MOUSE : 71- 120: hckvp CNWKKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVT kpcts PTN_BOVIN : 89- 136: rckip CNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VT iskpc PTN_CHICK : 57- 104: kckip CNWKKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VT iskpc PTN_HUMAN : 89- 136: rckip CNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VT iskpc PTN_RAT : 89- 136: rckip CNWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VT iskpc D 4: 141.2597 7( 7) N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-[ST] Occurences: 7(7) MK_CHICK : 74- 122: ckipc NWKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVS kpcta MK_HUMAN : 75- 123: crvpc NWKKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVT kpctp MK_MOUSE : 72- 120: ckvpc NWKKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVT kpcts PTN_BOVIN : 90- 136: ckipc NWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VT iskpc PTN_CHICK : 58- 104: ckipc NWKKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VT iskpc PTN_HUMAN : 90- 136: ckipc NWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VT iskpc PTN_RAT : 90- 136: ckipc NWKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VT iskpc E 5: 137.0843 7( 7) K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C Occurences: 7(7) MK_CHICK : 77- 125: pcnwk KkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPC takmk MK_CHICK : 77- 125: pcnwk KkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPC takmk MK_HUMAN : 78- 126: pcnwk KeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPC tpktk MK_MOUSE : 75- 123: pcnwk KeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPC tsktk PTN_BOVIN : 93- 141: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPC gkltk PTN_CHICK : 61- 109: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPC gkltk PTN_HUMAN : 93- 141: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPC gkltk PTN_RAT : 93- 141: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPC gkltk F 6: 137.0843 7( 7) K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P Occurences: 7(7) MK_CHICK : 76- 124: ipcnw KKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KP ctakm MK_CHICK : 76- 124: ipcnw KKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKP ctakm MK_HUMAN : 77- 125: vpcnw KKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KP ctpkt MK_MOUSE : 74- 122: vpcnw KKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KP ctskt PTN_BOVIN : 92- 140: ipcnw KKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKP cgklt PTN_CHICK : 60- 108: ipcnw KKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKP cgklt PTN_HUMAN : 92- 140: ipcnw KKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKP cgklt PTN_RAT : 92- 140: ipcnw KKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKP cgklt G 7: 137.0843 7( 7) W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K Occurences: 7(7) MK_CHICK : 75- 123: kipcn WKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--K pctak MK_CHICK : 75- 123: kipcn WKKkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsK pctak MK_HUMAN : 76- 124: rvpcn WKKeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--K pctpk MK_MOUSE : 73- 121: kvpcn WKKeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--K pctsk PTN_BOVIN : 91- 139: kipcn WKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl PTN_CHICK : 59- 107: kipcn WKKqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisK pcgkl PTN_HUMAN : 91- 139: kipcn WKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisK pcgkl PTN_RAT : 91- 139: kipcn WKKqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl H 8: 136.1147 7( 7) F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] Occurences: 7(7) MK_CHICK : 79- 126: nwkkk FGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCT akmka MK_CHICK : 79- 126: nwkkk FGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCT akmka MK_HUMAN : 80- 127: nwkke FGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCT pktka MK_MOUSE : 77- 124: nwkke FGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCT sktks PTN_BOVIN : 95- 142: nwkkq FGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltks PTN_CHICK : 63- 110: nwkkq FGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCG kltkp PTN_HUMAN : 95- 142: nwkkq FGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCG kltkp PTN_RAT : 95- 142: nwkkq FGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltkp I 9: 131.9446 7( 7) G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] Occurences: 7(7) MK_CHICK : 80- 126: wkkkf GADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCT akmka MK_CHICK : 80- 126: wkkkf GADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCT akmka MK_HUMAN : 81- 127: wkkef GADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCT pktka MK_MOUSE : 78- 124: wkkef GADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCT sktks PTN_BOVIN : 96- 142: wkkqf GAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltks PTN_CHICK : 64- 110: wkkqf GAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCG kltkp PTN_HUMAN : 96- 142: wkkqf GAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCG kltkp PTN_RAT : 96- 142: wkkqf GAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltkp J 10: 128.7442 7( 7) K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K Occurences: 7(7) MK_CHICK : 77- 123: pcnwk KkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--K pctak MK_CHICK : 77- 123: pcnwk KkFGADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsK pctak MK_HUMAN : 78- 124: pcnwk KeFGADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--K pctpk MK_MOUSE : 75- 121: pcnwk KeFGADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--K pctsk PTN_BOVIN : 93- 139: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl PTN_CHICK : 61- 107: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisK pcgkl PTN_HUMAN : 93- 139: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisK pcgkl PTN_RAT : 93- 139: pcnwk KqFGAECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl K 11: 127.7746 7( 7) A-[DE]-C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT] Occurences: 7(7) MK_CHICK : 81- 126: kkkfg ADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCT akmka MK_CHICK : 81- 126: kkkfg ADCKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCT akmka MK_HUMAN : 82- 127: kkefg ADCKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCT pktka MK_MOUSE : 79- 124: kkefg ADCKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCT sktks PTN_BOVIN : 97- 142: kkqfg AECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltks PTN_CHICK : 65- 110: kkqfg AECKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCG kltkp PTN_HUMAN : 97- 142: kkqfg AECKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCG kltkp PTN_RAT : 97- 142: kkqfg AECKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCG kltkp L 12: 127.2230 7( 7) K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K Occurences: 7(7) MK_CHICK : 84- 132: fgadc KYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAK akakk MK_CHICK : 84- 132: fgadc KYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAK akakk MK_HUMAN : 85- 133: fgadc KYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAK akakk MK_MOUSE : 82- 130: fgadc KYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSK tkakk PTN_BOVIN : 100- 148: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSK pqaes PTN_CHICK : 68- 116: fgaec KYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPK pqzex PTN_HUMAN : 100- 148: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPK pqaes PTN_RAT : 100- 148: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPK pqaes M 13: 124.6040 7( 7) C-K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K Occurences: 7(7) MK_CHICK : 83- 130: kfgad CKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmK akaka MK_CHICK : 83- 130: kfgad CKYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmK akaka MK_HUMAN : 84- 131: efgad CKYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktK akaka MK_MOUSE : 81- 128: efgad CKYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktK sktka PTN_BOVIN : 99- 146: qfgae CKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltK skpqa PTN_CHICK : 67- 114: qfgae CKYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltK pkpqz PTN_HUMAN : 99- 146: qfgae CKYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltK pkpqa PTN_RAT : 99- 146: qfgae CKYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltK pkpqa N 14: 123.0530 7( 7) Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K Occurences: 7(7) MK_CHICK : 85- 132: gadck YkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAK akakk MK_CHICK : 85- 132: gadck YkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAK akakk MK_HUMAN : 86- 133: gadck YkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAK akakk MK_MOUSE : 83- 130: gadck YkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSK tkakk PTN_BOVIN : 101- 148: gaeck YqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSK pqaes PTN_CHICK : 69- 116: gaeck YqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPK pqzex PTN_HUMAN : 101- 148: gaeck YqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPK pqaes PTN_RAT : 101- 148: gaeck YqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPK pqaes O 15: 121.5079 7( 7) F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT] Occurences: 7(7) MK_CHICK : 87- 133: dckyk FESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAKA kakkg MK_CHICK : 87- 133: dckyk FESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAKA kakkg MK_HUMAN : 88- 134: dckyk FENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAKA kakkg MK_MOUSE : 85- 131: dckyk FESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSKT kakkg PTN_BOVIN : 103- 149: eckyq FQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSKP qaesk PTN_CHICK : 71- 117: eckyq FQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPKP qzexk PTN_HUMAN : 103- 149: eckyq FQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPKP qaesk PTN_RAT : 103- 149: eckyq FQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPKP qaesk P 16: 114.7169 7( 7) W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK] Occurences: 7(7) MK_CHICK : 90- 136: ykfes WGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAKAkaK kgkgk MK_CHICK : 90- 136: ykfes WGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAKAkaK kgkgk MK_HUMAN : 91- 137: ykfen WGACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAKAkaK kgkgk MK_MOUSE : 88- 134: ykfes WGACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSKTkaK kgkgk PTN_BOVIN : 106- 152: yqfqa WGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSKPqaE skkkk PTN_CHICK : 74- 120: yqfqa WGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPKPqzE xkkkk PTN_HUMAN : 106- 152: yqfqa WGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPKPqaE skkkk PTN_RAT : 106- 152: yqfqa WGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPKPqaE skkkk Q 17: 110.5468 7( 7) G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK] Occurences: 7(7) MK_CHICK : 91- 136: kfesw GGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAKAkaK kgkgk MK_CHICK : 91- 136: kfesw GGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAKAkaK kgkgk MK_HUMAN : 92- 137: kfenw GACDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAKAkaK kgkgk MK_MOUSE : 89- 134: kfesw GACDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSKTkaK kgkgk PTN_BOVIN : 107- 152: qfqaw GECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSKPqaE skkkk PTN_CHICK : 75- 120: qfqaw GECDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPKPqzE xkkkk PTN_HUMAN : 107- 152: qfqaw GECDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPKPqaE skkkk PTN_RAT : 107- 152: qfqaw GECDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPKPqaE skkkk R 18: 107.9168 7( 7) C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK]-x(2)-K Occurences: 7(7) MK_CHICK : 93- 139: eswgg CSAkTGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAKAkaKkgK gkd MK_CHICK : 93- 139: eswgg CSAkTGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAKAkaKkgK gkd MK_HUMAN : 94- 140: enwga CDGgTGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAKAkaKkgK gkd MK_MOUSE : 91- 137: eswga CDGsTGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSKTkaKkgK gkd PTN_BOVIN : 109- 155: qawge CDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSKPqaEskK kkkeg PTN_CHICK : 77- 123: qawge CDLnTAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPKPqzExkK kkkeg PTN_HUMAN : 109- 155: qawge CDLnTAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPKPqaEskK kkkeg PTN_RAT : 109- 155: qawge CDLnTAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPKPqaEskK kkkeg S 19: 105.3548 7( 7) T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K-P-C-[GT]-x(3)-K-[APS]-K-[APT]-x(2)-[EK]-x(2)-K-x-K-[DK] Occurences: 7(7) MK_CHICK : 97- 142: gcsak TGvKTRSGiLKKAlYNAECeevvyVs--KPCTakmKAKAkaKkgKgKD MK_CHICK : 97- 142: gcsak TGvKTRSGiLKKAlYNAECeev--VyvsKPCTakmKAKAkaKkgKgKD MK_HUMAN : 98- 143: acdgg TGtKVRQGtLKKArYNAQCqetirVt--KPCTpktKAKAkaKkgKgKD MK_MOUSE : 95- 140: acdgs TGtKARQGtLKKArYNAQCqetirVt--KPCTsktKSKTkaKkgKgKD PTN_BOVIN : 113- 158: ecdln TAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKSKPqaEskKkKK egkkq PTN_CHICK : 81- 126: ecdln TAlKTRTGnLKRAlHNADCqkt--VtisKPCGkltKPKPqzExkKkKK egkkq PTN_HUMAN : 113- 158: ecdln TAlKTRTGsLKRAlHNAECqkt--VtisKPCGkltKPKPqaEskKkKK egkkq PTN_RAT : 113- 158: ecdln TAlKTRTGsLKRAlHNADCqkt--VtisKPCGkltKPKPqaEskKkKK egkkq T 20: 104.7234 7( 7) K-Y-x-F-[EQ]-[ANS]-W-G-[AEG]-C-[DS]-[AGL]-x-T-[AG]-x-K-[ATV]-R-[QST]-G-x-L-K-[KR]-A-x-[HY]-N-A-[DEQ]-C-x(3,5)-V-x(1,3)-K Occurences: 7(7) MK_CHICK : 84- 123: fgadc KYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeevvyVs--K pctak MK_CHICK : 84- 123: fgadc KYkFESWGGCSAkTGvKTRSGiLKKAlYNAECeev--VyvsK pctak MK_HUMAN : 85- 124: fgadc KYkFENWGACDGgTGtKVRQGtLKKArYNAQCqetirVt--K pctpk MK_MOUSE : 82- 121: fgadc KYkFESWGACDGsTGtKARQGtLKKArYNAQCqetirVt--K pctsk PTN_BOVIN : 100- 139: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl PTN_CHICK : 68- 107: fgaec KYqFQAWGECDLnTAlKTRTGnLKRAlHNADCqkt--VtisK pcgkl PTN_HUMAN : 100- 139: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNAECqkt--VtisK pcgkl PTN_RAT : 100- 139: fgaec KYqFQAWGECDLnTAlKTRTGsLKRAlHNADCqkt--VtisK pcgkl Number of patterns evaluated by Pratt:8232 Total running time: 1 seconds