------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file PROK_SULFATE_BIND_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PROK_SULFATE_BIND_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYSP_ECOLI 338 CYSP_SALTY 338 SUBI_ECOLI 329 SUBI_SALTY 311 SUBI_SYNP7 350 SUBI_SYNY3 352 Pratt run started at Thu Feb 6 20:51:12 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 45.3706 6( 6) I-x(2,3)-N-P-K-x-S-G-x-A-R-x(3)-L-x(2)-W-G 2: 40.7005 6( 6) N-P-K-x(0,1)-S-x(0,1)-G-x-A-R-x(3)-L-x(2)-W-G 3: 36.5305 6( 6) P-K-x(0,1)-S-x(0,1)-G-x-A-R-x(3)-L-x(2)-W-G 4: 36.0305 6( 6) D-x(1,3)-R-x(2)-T-x(2)-F-x(2,3)-G-x(3)-V-L-x(3)-E-x-E 5: 33.3604 6( 6) K-x-S-G-x-A-R-x(3)-L-x(2)-W-G 6: 32.8604 6( 6) R-x(2)-T-x(2)-F-x(2,3)-G-x(3)-V-L-x(3)-E-x-E 7: 31.8604 10( 6) P-x(2,4)-S-x(0,1)-G-x-A-R-x(3)-L-x(2)-W-G 8: 28.6904 6( 6) T-x(2)-F-x(2,3)-G-x(3)-V-L-x(3)-E-x-E 9: 28.1904 8( 6) S-x(0,1)-G-x(0,1)-A-R-x(3)-L-x(2)-W-G 10: 27.6904 8( 6) S-x(0,2)-G-x(0,1)-A-R-x(3)-L-x(2)-W-G 11: 25.0203 6( 6) G-x-A-R-x(3)-L-x(2)-W-G 12: 24.5203 10( 6) G-x(0,1)-A-R-x(3)-L-x(2)-W-G 13: 23.5203 7( 6) V-x(5)-N-x(4)-G-x(1,3)-A-x(4)-L-x(1,2)-W 14: 23.0203 6( 6) K-x(2,4)-T-x(3)-V-x(3)-Q-x(5)-G-x(2,4)-A 15: 20.8503 6( 6) T-x(5)-A-x(4)-L-x(2)-P-x(2)-Q 16: 20.8503 6( 6) G-x(3)-V-L-x(3)-E-x-E 17: 20.8503 6( 6) A-R-x(3)-L-x(2)-W-G 18: 20.3503 6( 6) S-G-G-x(5)-L-x(2,3)-G 19: 20.3503 6( 6) I-x(2)-N-x(0,1)-P-x(5)-A-R 20: 19.8503 11( 6) G-x(1,3)-V-L-x(3)-E-x-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 92.6072 6( 6) R-[EG]-[AS]-T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV] B 2: 90.3913 6( 6) D-x(1,3)-R-[EG]-[AS]-T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS] C 3: 88.2316 6( 6) I-x(2,3)-N-P-K-[ST]-S-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] D 4: 87.2242 6( 6) T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV] E 5: 80.3861 6( 6) N-P-K-x(0,1)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] F 6: 76.2242 6( 6) G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV]-x(2)-[DNV] G 7: 76.2214 6( 6) K-[ST]-S-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] H 8: 76.2161 6( 6) P-K-x(0,1)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] I 9: 75.2007 6( 6) T-[EKR]-x-[AV]-x-[DEK]-A-[FY]-[LV]-x-[FWY]-L-[FY]-[ST]-P-[EQ]-[AG]-Q-[AEQT]-x(2)-[AT]-[DEHK]-x(2)-[FY]-R-[PV]-x(3)-[DE]-[GIV] J 10: 71.5460 10( 6) P-x(2,4)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] K 11: 68.8801 11( 6) G-x(1,3)-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV]-x(2)-[DNV] L 12: 64.7059 6( 6) G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] M 13: 64.6029 8( 6) S-x(0,1)-G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] N 14: 64.1029 8( 6) S-x(0,2)-G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] O 15: 60.9328 10( 6) G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] P 16: 59.1176 6( 6) V-x(2)-[IV]-[DT]-x-N-[PV]-x-[AST]-[NS]-G-x(1,3)-A-x(2)-[AN]-[FY]-L-x(1,2)-W-[GL]-x-[ASV]-x(3)-[GNQ]-[GNT]-x(2)-[EQT] Q 17: 57.2628 6( 6) A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] R 18: 33.0176 6( 6) K-x(2,4)-T-x-[DNQ]-[DENQ]-V-x(3)-Q-x(3)-[DGS]-x-G-x(2,4)-A-[DTV] S 19: 31.4233 6( 6) I-x(2)-N-x(0,1)-P-x(2)-[AS]-x-[DGN]-A-R-x-[NST]-x(2)-[AGV] T 20: 31.0904 2( 2) V-x(2)-[IV]-[DT]-x-N-[PV]-x-[AST]-[NS]-G-x(1,3)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 92.6072 6( 6) R-[EG]-[AS]-T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV] Occurences: 6(6) CYSP_ECOLI : 199- 248: fdtgg RGATTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPV awvdk CYSP_SALTY : 199- 248: fdtgg RGATTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPV awvdk SUBI_ECOLI : 193- 242: ldsga RGSTNTFverGiGDVLIAWENEAllAanelGkdkFeIVtpseSilAepTV svvdk SUBI_SALTY : 175- 224: ldsga RGSTNTFverGiGDVLIAWENEAllAtnelGkdkFeIVtpseSilAepTV svvdk SUBI_SYNP7 : 212- 260: lakda RESTDVFtk-GqADVLLNYENELilAqqkgEkvdYaIPpvniNiqGpvAV vdtyt SUBI_SYNY3 : 213- 262: lpkda RESTDVFykqGqGNVLLNYENEVllAkqkgEnqpYiIPqdfnVsiSgpVA vvdtt B 2: 90.3913 6( 6) D-x(1,3)-R-[EG]-[AS]-T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS] Occurences: 6(6) CYSP_ECOLI : 195- 244: nvevf DtggRGATTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilA efpva CYSP_SALTY : 195- 244: nvevf DtggRGATTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilA efpva SUBI_ECOLI : 189- 238: neevl DsgaRGSTNTFverGiGDVLIAWENEAllAanelGkdkFeIVtpseSilA eptvs SUBI_SALTY : 171- 220: nvevl DsgaRGSTNTFverGiGDVLIAWENEAllAtnelGkdkFeIVtpseSilA eptvs SUBI_SYNP7 : 210- 256: pilak Da--RESTDVFtk-GqADVLLNYENELilAqqkgEkvdYaIPpvniNiqG pvavv SUBI_SYNY3 : 211- 258: pvlpk Da--RESTDVFykqGqGNVLLNYENEVllAkqkgEnqpYiIPqdfnVsiS gpvav C 3: 88.2316 6( 6) I-x(2,3)-N-P-K-[ST]-S-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 148- 181: sdvkl Ifp-NPKTSGNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 148- 181: fdlkl Ifp-NPKTSGNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 142- 175: pgvsv Itp-NPKSSGGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 124- 157: pgvsv Itp-NPKSSGGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 161- 195: kpgvr IvtaNPKTSGGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 163- 196: pevkv Ita-NPKTSGGARWNFLGIWGsVtktGGTEeQafD fagkv D 4: 87.2242 6( 6) T-[DNT]-[TV]-F-x(2,3)-G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV] Occurences: 6(6) CYSP_ECOLI : 202- 251: ggrga TTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwV dknvq CYSP_SALTY : 202- 251: ggrga TTTFaerGlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwV dknvq SUBI_ECOLI : 196- 245: gargs TNTFverGiGDVLIAWENEAllAanelGkdkFeIVtpseSilAepTVSvV dkvve SUBI_SALTY : 178- 227: gargs TNTFverGiGDVLIAWENEAllAtnelGkdkFeIVtpseSilAepTVSvV dkvve SUBI_SYNP7 : 215- 263: dares TDVFtk-GqADVLLNYENELilAqqkgEkvdYaIPpvniNiqGpvAVVdT ytdkh SUBI_SYNY3 : 216- 265: dares TDVFykqGqGNVLLNYENEVllAkqkgEnqpYiIPqdfnVsiSgpVAVvD ttvdk E 5: 80.3861 6( 6) N-P-K-x(0,1)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 151- 181: klifp NPKtS-GNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 151- 181: klifp NPKtS-GNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 145- 175: svitp NPKsS-GGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 145- 175: svitp NPK-SsGGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 127- 157: svitp NPKsS-GGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 127- 157: svitp NPK-SsGGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 165- 195: rivta NPKtS-GGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 166- 196: kvita NPKtS-GGARWNFLGIWGsVtktGGTEeQafD fagkv F 6: 76.2242 6( 6) G-x-[AG]-[DN]-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV]-x(2)-[DNV] Occurences: 6(6) CYSP_ECOLI : 209- 254: tfaer GlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang CYSP_SALTY : 209- 254: tfaer GlGDVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang SUBI_ECOLI : 203- 248: tfver GiGDVLIAWENEAllAanelGkdkFeIVtpseSilAepTVSvVdkV vekkg SUBI_SALTY : 185- 230: tfver GiGDVLIAWENEAllAtnelGkdkFeIVtpseSilAepTVSvVdkV vekkd SUBI_SYNP7 : 221- 266: dvftk GqADVLLNYENELilAqqkgEkvdYaIPpvniNiqGpvAVVdTytD khgtr SUBI_SYNY3 : 223- 268: vfykq GqGNVLLNYENEVllAkqkgEnqpYiIPqdfnVsiSgpVAVvDttV dkkgt G 7: 76.2214 6( 6) K-[ST]-S-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 153- 181: ifpnp KTSGNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 153- 181: ifpnp KTSGNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 147- 175: itpnp KSSGGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 129- 157: itpnp KSSGGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 167- 195: vtanp KTSGGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 168- 196: itanp KTSGGARWNFLGIWGsVtktGGTEeQafD fagkv H 8: 76.2161 6( 6) P-K-x(0,1)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 152- 181: lifpn PKtS-GNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 152- 181: lifpn PKtS-GNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 146- 175: vitpn PKsS-GGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 146- 175: vitpn PK-SsGGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 128- 157: vitpn PKsS-GGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 128- 157: vitpn PK-SsGGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 166- 195: ivtan PKtS-GGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 167- 196: vitan PKtS-GGARWNFLGIWGsVtktGGTEeQafD fagkv I 9: 75.2007 6( 6) T-[EKR]-x-[AV]-x-[DEK]-A-[FY]-[LV]-x-[FWY]-L-[FY]-[ST]-P-[EQ]-[AG]-Q-[AEQT]-x(2)-[AT]-[DEHK]-x(2)-[FY]-R-[PV]-x(3)-[DE]-[GIV] Occurences: 6(6) CYSP_ECOLI : 260- 292: vqang TEkAaKAYLnWLYSPQAQTiiTDyyYRVnnpEV mdklk CYSP_SALTY : 260- 292: vqang TEkAaKAYLnWLYSPQAQTiiTHyyYRVnnpEI mgkqa SUBI_ECOLI : 254- 286: vekkg TKeVaEAYLkYLYSPEGQEiaAKnyYRPrdaEV akkye SUBI_SALTY : 236- 268: vekkd TKaVaEAYLkYLYSPEGQEiaAKnfYRPrdaDV akkyd SUBI_SYNP7 : 270- 302: tdkhg TRkVsEAFVqFLFTPEAQAefAKvgFRPalpEG vdpql SUBI_SYNY3 : 273- 305: vdkkg TReVrDAFVqYLFTPEAQQifAEtgFRPvneEV lakfa J 10: 71.5460 10( 6) P-x(2,4)-S-x(0,1)-G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 10(6) CYSP_ECOLI : 150- 181: vklif PnpktS-GNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_ECOLI : 152- 181: lifpn Pkt--S-GNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 150- 181: lklif PnpktS-GNARYTYLAAWGaAdnaDGGDkAktE qfmtq CYSP_SALTY : 152- 181: lifpn Pkt--S-GNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 144- 175: vsvit PnpksS-GGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 144- 175: vsvit Pnpk-SsGGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 146- 175: vitpn Pks--S-GGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 126- 157: vsvit PnpksS-GGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 126- 157: vsvit Pnpk-SsGGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 128- 157: vitpn Pks--S-GGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 166- 195: ivtan Pkt--S-GGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 167- 196: vitan Pkt--S-GGARWNFLGIWGsVtktGGTEeQafD fagkv K 11: 68.8801 11( 6) G-x(1,3)-V-L-[IL]-[ANS]-[FWY]-E-[NS]-E-[ALV]-x(2)-[AI]-x(4)-[EG]-x(3)-[FY]-x-[IV]-[PV]-x(4)-[NSV]-x(2)-[AGS]-x(2)-[APTV]-[AV]-[ASV]-x-[DTV]-x(2)-[DNV] Occurences: 11(6) CYSP_ECOLI : 209- 254: tfaer GlgdVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang CYSP_ECOLI : 211- 254: aergl Gd--VLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang CYSP_SALTY : 209- 254: tfaer GlgdVLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang CYSP_SALTY : 211- 254: aergl Gd--VLISFESEVnnIrkqyEaqgFeVVipktNilAefPVAwVdkN vqang SUBI_ECOLI : 203- 248: tfver GigdVLIAWENEAllAanelGkdkFeIVtpseSilAepTVSvVdkV vekkg SUBI_ECOLI : 205- 248: vergi Gd--VLIAWENEAllAanelGkdkFeIVtpseSilAepTVSvVdkV vekkg SUBI_SALTY : 185- 230: tfver GigdVLIAWENEAllAtnelGkdkFeIVtpseSilAepTVSvVdkV vekkd SUBI_SALTY : 187- 230: vergi Gd--VLIAWENEAllAtnelGkdkFeIVtpseSilAepTVSvVdkV vekkd SUBI_SYNP7 : 221- 266: dvftk GqadVLLNYENELilAqqkgEkvdYaIPpvniNiqGpvAVVdTytD khgtr SUBI_SYNY3 : 223- 268: vfykq GqgnVLLNYENEVllAkqkgEnqpYiIPqdfnVsiSgpVAVvDttV dkkgt SUBI_SYNY3 : 225- 268: ykqgq Gn--VLLNYENEVllAkqkgEnqpYiIPqdfnVsiSgpVAVvDttV dkkgt L 12: 64.7059 6( 6) G-[GN]-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 156- 181: npkts GNARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 156- 181: npkts GNARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 150- 175: npkss GGARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 132- 157: npkss GGARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 170- 195: npkts GGARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 171- 196: npkts GGARWNFLGIWGsVtktGGTEeQafD fagkv M 13: 64.6029 8( 6) S-x(0,1)-G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 8(6) CYSP_ECOLI : 155- 181: pnpkt S-GnARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 155- 181: pnpkt S-GnARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 148- 175: tpnpk SsGgARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 149- 175: pnpks SgG-ARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 149- 175: pnpks S-GgARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 130- 157: tpnpk SsGgARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 131- 157: pnpks SgG-ARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 131- 157: pnpks S-GgARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 169- 195: anpkt SgG-ARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNP7 : 169- 195: anpkt S-GgARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 170- 196: anpkt SgG-ARWNFLGIWGsVtktGGTEeQafD fagkv SUBI_SYNY3 : 170- 196: anpkt S-GgARWNFLGIWGsVtktGGTEeQafD fagkv N 14: 64.1029 8( 6) S-x(0,2)-G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 8(6) CYSP_ECOLI : 155- 181: pnpkt S--GnARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 155- 181: pnpkt S--GnARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 148- 175: tpnpk SsgG-ARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 148- 175: tpnpk Ss-GgARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 149- 175: pnpks Sg-G-ARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 149- 175: pnpks S--GgARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 130- 157: tpnpk SsgG-ARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 130- 157: tpnpk Ss-GgARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 131- 157: pnpks Sg-G-ARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 131- 157: pnpks S--GgARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 169- 195: anpkt Sg-G-ARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNP7 : 169- 195: anpkt S--GgARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 170- 196: anpkt Sg-G-ARWNFLGIWGsVtktGGTEeQafD fagkv SUBI_SYNY3 : 170- 196: anpkt S--GgARWNFLGIWGsVtktGGTEeQafD fagkv O 15: 60.9328 10( 6) G-x(0,1)-A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 10(6) CYSP_ECOLI : 156- 181: npkts GnARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 156- 181: npkts GnARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 150- 175: npkss GgARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_ECOLI : 151- 175: pkssg G-ARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 132- 157: npkss GgARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SALTY : 133- 157: pkssg G-ARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 170- 195: npkts GgARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNP7 : 171- 195: pktsg G-ARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 171- 196: npkts GgARWNFLGIWGsVtktGGTEeQafD fagkv SUBI_SYNY3 : 172- 196: pktsg G-ARWNFLGIWGsVtktGGTEeQafD fagkv P 16: 59.1176 6( 6) V-x(2)-[IV]-[DT]-x-N-[PV]-x-[AST]-[NS]-G-x(1,3)-A-x(2)-[AN]-[FY]-L-x(1,2)-W-[GL]-x-[ASV]-x(3)-[GNQ]-[GNT]-x(2)-[EQT] Occurences: 6(6) CYSP_ECOLI : 248- 281: laefp VawVDkNVqANGtekAakAYLn-WLySpqaQTiiT dyyyr CYSP_SALTY : 248- 281: laefp VawVDkNVqANGtekAakAYLn-WLySpqaQTiiT hyyyr SUBI_ECOLI : 139- 171: likpg VsvITpNPkSSGg--ArwNYLaaWGyAlhhNNndQ akaqd SUBI_SALTY : 121- 153: likpg VsvITpNPkSSGg--ArwNYLaaWGyAlhhNNndQ akaed SUBI_SYNP7 : 159- 191: ltkpg VriVTaNPkTSGg--ArwNFLgaWGsVtqtGGteE qalqf SUBI_SYNY3 : 160- 192: lanpe VkvITaNPkTSGg--ArwNFLgiWGsVtktGGteE qafdf Q 17: 57.2628 6( 6) A-R-[WY]-[NT]-[FY]-L-[AG]-[AI]-W-G-x-[AV]-x(3)-[DGN]-[GN]-[GNT]-[DE]-x-[AGQ]-x(2)-[DEQ] Occurences: 6(6) CYSP_ECOLI : 158- 181: ktsgn ARYTYLAAWGaAdkaDGGDkGktE qfmtq CYSP_SALTY : 158- 181: ktsgn ARYTYLAAWGaAdnaDGGDkAktE qfmtq SUBI_ECOLI : 152- 175: kssgg ARWNYLAAWGyAlhhNNNDqAkaQ dfvra SUBI_SALTY : 134- 157: kssgg ARWNYLAAWGyAlhhNNNDqAkaE dfvka SUBI_SYNP7 : 172- 195: ktsgg ARWNFLGAWGsVtqtGGTEeQalQ fttdi SUBI_SYNY3 : 173- 196: ktsgg ARWNFLGIWGsVtktGGTEeQafD fagkv R 18: 33.0176 6( 6) K-x(2,4)-T-x-[DNQ]-[DENQ]-V-x(3)-Q-x(3)-[DGS]-x-G-x(2,4)-A-[DTV] Occurences: 6(6) CYSP_ECOLI : 81- 106: ilqgl KadvvTyNQVtdvQilhDkGklipAD wqsrl CYSP_SALTY : 81- 106: ilqgl KadvvTyNQVtdvQilhDkGklipAD wqsll SUBI_ECOLI : 48- 69: fsahw Kqq--TgDNVvirQshgGsGkq--AT sving SUBI_SALTY : 29- 50: fsahw Kqe--TgDNVvidQshgSqGkq--AT ssvin SUBI_SYNP7 : 68- 91: faaqw Kek--TgQEVrfnQsygGsGsqtrAV idgle SUBI_SYNY3 : 69- 92: fteew Ksk--TgQDVtfeQsygGsGsqtrAV vdgle S 19: 31.4233 6( 6) I-x(2)-N-x(0,1)-P-x(2)-[AS]-x-[DGN]-A-R-x-[NST]-x(2)-[AGV] Occurences: 6(6) CYSP_ECOLI : 148- 164: sdvkl IfpN-PktSgNARyTylA awgaa CYSP_SALTY : 148- 164: fdlkl IfpN-PktSgNARyTylA awgaa SUBI_ECOLI : 142- 158: pgvsv ItpN-PksSgGARwNylA awgya SUBI_SALTY : 124- 140: pgvsv ItpN-PksSgGARwNylA awgya SUBI_SYNP7 : 200- 217: qfttd IykNvPilAkDAReStdV ftkgq SUBI_SYNY3 : 163- 179: pevkv ItaN-PktSgGARwNflG iwgsv T 20: 31.0904 2( 2) V-x(2)-[IV]-[DT]-x-N-[PV]-x-[AST]-[NS]-G-x(1,3)-A Occurences: 2(2) CYSP_ECOLI : 248- 263: laefp VawVDkNVqANGtekA akayl CYSP_SALTY : 248- 263: laefp VawVDkNVqANGtekA akayl Number of patterns evaluated by Pratt:10661 Total running time: 5 seconds