------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file PROK_CO2_ANHYDRASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PROK_CO2_ANHYDRASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CAH1_FLALI 330 CAH2_ARATH 259 CAH2_FLALI 190 CAHC_ARATH 336 CAHC_HORVU 324 CAHC_PEA 328 CAHC_SPIOL 319 CAHC_TOBAC 321 CAHX_FLABI 331 CAHX_FLABR 330 CAHX_FLAPR 329 CYNT_ECOLI 218 CYNT_SYNP7 272 YADF_ECOLI 213 YADF_HAEIN 229 Pratt run started at Thu Feb 6 20:51:10 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 15( 15) G-x(2)-F-x(2)-R-N-x(0,1)-A-x(0,1)-N 2: 23.5203 15( 15) C-x-D-S-R-x(1,2)-P-x(1,3)-L 3: 19.8503 15( 15) F-x(2)-R-N-x(0,1)-A-x(0,1)-N 4: 19.3503 15( 15) D-S-R-x(1,2)-P-x(1,3)-L 5: 16.6802 15( 15) G-H-x(2)-C-G 6: 15.6802 15( 15) G-H-x(1,2)-C-x(0,1)-G 7: 15.6802 16( 15) I-x(1,2)-H-x(2,3)-C-G 8: 15.6802 15( 15) R-N-x(0,1)-A-x(0,1)-N 9: 15.1802 24( 15) V-x(2,4)-H-x(2,3)-C-G 10: 15.1802 15( 15) E-x(2)-V-x(3,4)-V-x(2,4)-I 11: 15.1802 17( 15) E-x(2,4)-V-x(3,4)-V-x(3)-V 12: 15.1802 16( 15) S-R-x(1,2)-P-x(1,3)-L 13: 15.1802 17( 15) S-x-S-x(0,1)-R-x(0,2)-P 14: 12.5102 15( 15) H-x(2)-C-G 15: 12.5102 15( 15) I-x(3)-G-x(4)-G 16: 12.0102 16( 15) G-x(1,2)-F-x(3)-N 17: 12.0102 22( 15) L-x(5)-V-x(0,1)-A 18: 12.0102 17( 15) V-x(4,5)-V-x(2)-I 19: 12.0102 15( 15) Y-x-V-x(4,5)-V 20: 11.5102 29( 15) L-x(4,5)-S-x(0,1)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.5167 15( 15) G-[DE]-[AL]-F-x(2)-R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] B 2: 47.3415 15( 15) G-x(1,2)-F-x(2)-R-N-[AIV]-[AG]-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] C 3: 41.0059 15( 15) F-x(2)-R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] D 4: 36.8359 15( 15) R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] E 5: 33.5401 15( 15) S-[ADS]-S-x(0,1)-R-x(0,2)-P-x(4)-[DNQT]-x(4)-[ADEG]-x(2)-[FMV]-[AIV]-x(4)-[ADN]-x(2)-[PV] F 6: 28.4912 15( 15) G-H-x(2)-C-G-[AG]-[IMV]-x-[AG]-[AIL] G 7: 26.9991 15( 15) G-H-x(1,2)-C-x(0,1)-G-[AGI]-[IMV]-x-[AG]-[AIL] H 8: 26.9541 15( 15) Y-[ADE]-V-x(4,5)-V-x(2)-[GI]-x(3)-[GST]-x(3)-[CT]-[GL] I 9: 26.6994 15( 15) C-[AS]-D-S-R-x(1,2)-P-x(1,3)-L J 10: 26.3525 15( 15) I-x-[IPV]-x-G-x(3)-[CG]-G-[AEG]-x(2)-[AGS]-[AIL] K 11: 24.3212 15( 15) H-x(2)-C-G-[AG]-[IMV]-x-[AG]-[AIL] L 12: 20.6173 16( 15) I-x(1,2)-H-x(2,3)-C-G-x(3)-[ACG]-[AGIL] M 13: 20.5523 24( 15) V-x(2,4)-H-x(2,3)-C-G-x(3)-[ACG]-[GIL] N 14: 20.3213 15( 15) E-x(2,4)-V-x(3,4)-V-[AE]-x(2)-V-[AILPV] O 15: 19.3503 15( 15) D-S-R-x(1,2)-P-x(1,3)-L P 16: 17.4042 15( 15) E-x(2)-V-x(3,4)-V-x(2,4)-I-x-[GNTV] Q 17: 15.1802 16( 15) S-R-x(1,2)-P-x(1,3)-L R 18: 12.0102 22( 15) L-x(5)-V-x(0,1)-A S 19: 12.0102 17( 15) V-x(4,5)-V-x(2)-I T 20: 12.0102 15( 15) Y-x-V-x(4,5)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.5167 15( 15) G-[DE]-[AL]-F-x(2)-R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] Occurences: 15(15) CAH1_FLALI : 177- 207: ldfqp GEAFvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAH2_ARATH : 106- 136: ldfhp GDAFvvRNiA-NmVPpfDkvkyAgVGaAieyA vlhlk CAH2_FLALI : 37- 67: ldfqp GEAFvvRNiA-NmVPpyDtikhSgAGaAieyA vlhlk CAHC_ARATH : 183- 213: ldfqp GDAFvvRNiA-NmVPpfDkvkyGgVGaAieyA vlhlk CAHC_HORVU : 181- 211: lglep GEAFtiRNiA-NmVPayCknkyAgVGsAieyA vcalk CAHC_PEA : 175- 205: ldfqp GEAFvvRNvA-NlVPpyDqakyAgTGaAieyA vlhlk CAHC_SPIOL : 166- 196: ldfqp GEAFmvRNiA-NmVPvfDkdkyAgVGaAieyA vlhlk CAHC_TOBAC : 168- 198: lnfqp GEAFvvRNiA-NmVPayDktrySgVGaAieyA vlhlk CAHX_FLABI : 178- 208: ldfqp GEAFvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLABR : 177- 207: ldfqp GEAFvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLAPR : 176- 206: ldfqp GEAFvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CYNT_ECOLI : 55- 85: tqrep GDLFviRN-AgNiVPsyGpepgGvSAsVeyaV aalrv CYNT_SYNP7 : 55- 85: tqsgm GELFviRN-AgNlIPpfGaangGeGAsIeyaI aalni YADF_ECOLI : 58- 88: tglep GELFvhRNvA-NlVIhtDlnclSvVQyAvdvL evehi YADF_HAEIN : 58- 88: tnlep GELFvhRNvA-NqVIhtDfnclSvVQyAvdvL kiehi B 2: 47.3415 15( 15) G-x(1,2)-F-x(2)-R-N-[AIV]-[AG]-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] Occurences: 15(15) CAH1_FLALI : 177- 207: ldfqp GeaFvvRNVANmVPpfDktkySgVGaAveyA vlhlk CAH2_ARATH : 106- 136: ldfhp GdaFvvRNIANmVPpfDkvkyAgVGaAieyA vlhlk CAH2_FLALI : 37- 67: ldfqp GeaFvvRNIANmVPpyDtikhSgAGaAieyA vlhlk CAHC_ARATH : 183- 213: ldfqp GdaFvvRNIANmVPpfDkvkyGgVGaAieyA vlhlk CAHC_HORVU : 181- 211: lglep GeaFtiRNIANmVPayCknkyAgVGsAieyA vcalk CAHC_PEA : 175- 205: ldfqp GeaFvvRNVANlVPpyDqakyAgTGaAieyA vlhlk CAHC_SPIOL : 166- 196: ldfqp GeaFmvRNIANmVPvfDkdkyAgVGaAieyA vlhlk CAHC_TOBAC : 168- 198: lnfqp GeaFvvRNIANmVPayDktrySgVGaAieyA vlhlk CAHX_FLABI : 178- 208: ldfqp GeaFvvRNVANmVPpfDktkySgVGaAveyA vlhlk CAHX_FLABR : 177- 207: ldfqp GeaFvvRNVANmVPpfDktkySgVGaAveyA vlhlk CAHX_FLAPR : 176- 206: ldfqp GeaFvvRNVANmVPpfDktkySgVGaAveyA vlhlk CYNT_ECOLI : 55- 85: tqrep GdlFviRNAGNiVPsyGpepgGvSAsVeyaV aalrv CYNT_SYNP7 : 55- 85: tqsgm GelFviRNAGNlIPpfGaangGeGAsIeyaI aalni YADF_ECOLI : 58- 88: tglep GelFvhRNVANlVIhtDlnclSvVQyAvdvL evehi YADF_HAEIN : 58- 88: tnlep GelFvhRNVANqVIhtDfnclSvVQyAvdvL kiehi C 3: 41.0059 15( 15) F-x(2)-R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] Occurences: 15(15) CAH1_FLALI : 180- 207: qpgea FvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAH2_ARATH : 109- 136: hpgda FvvRNiA-NmVPpfDkvkyAgVGaAieyA vlhlk CAH2_FLALI : 40- 67: qpgea FvvRNiA-NmVPpyDtikhSgAGaAieyA vlhlk CAHC_ARATH : 186- 213: qpgda FvvRNiA-NmVPpfDkvkyGgVGaAieyA vlhlk CAHC_HORVU : 184- 211: epgea FtiRNiA-NmVPayCknkyAgVGsAieyA vcalk CAHC_PEA : 178- 205: qpgea FvvRNvA-NlVPpyDqakyAgTGaAieyA vlhlk CAHC_SPIOL : 169- 196: qpgea FmvRNiA-NmVPvfDkdkyAgVGaAieyA vlhlk CAHC_TOBAC : 171- 198: qpgea FvvRNiA-NmVPayDktrySgVGaAieyA vlhlk CAHX_FLABI : 181- 208: qpgea FvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLABR : 180- 207: qpgea FvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLAPR : 179- 206: qpgea FvvRNvA-NmVPpfDktkySgVGaAveyA vlhlk CYNT_ECOLI : 58- 85: epgdl FviRN-AgNiVPsyGpepgGvSAsVeyaV aalrv CYNT_SYNP7 : 58- 85: gmgel FviRN-AgNlIPpfGaangGeGAsIeyaI aalni YADF_ECOLI : 61- 88: epgel FvhRNvA-NlVIhtDlnclSvVQyAvdvL evehi YADF_HAEIN : 61- 88: epgel FvhRNvA-NqVIhtDfnclSvVQyAvdvL kiehi D 4: 36.8359 15( 15) R-N-x(0,1)-A-x(0,1)-N-x-[IV]-[IP]-x(2)-[CDG]-x(4)-[AGS]-x-[AGSTV]-[AGQ]-x-[AIV]-x(3)-[AILV] Occurences: 15(15) CAH1_FLALI : 183- 207: eafvv RNvA-NmVPpfDktkySgVGaAveyA vlhlk CAH2_ARATH : 112- 136: dafvv RNiA-NmVPpfDkvkyAgVGaAieyA vlhlk CAH2_FLALI : 43- 67: eafvv RNiA-NmVPpyDtikhSgAGaAieyA vlhlk CAHC_ARATH : 189- 213: dafvv RNiA-NmVPpfDkvkyGgVGaAieyA vlhlk CAHC_HORVU : 187- 211: eafti RNiA-NmVPayCknkyAgVGsAieyA vcalk CAHC_PEA : 181- 205: eafvv RNvA-NlVPpyDqakyAgTGaAieyA vlhlk CAHC_SPIOL : 172- 196: eafmv RNiA-NmVPvfDkdkyAgVGaAieyA vlhlk CAHC_TOBAC : 174- 198: eafvv RNiA-NmVPayDktrySgVGaAieyA vlhlk CAHX_FLABI : 184- 208: eafvv RNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLABR : 183- 207: eafvv RNvA-NmVPpfDktkySgVGaAveyA vlhlk CAHX_FLAPR : 182- 206: eafvv RNvA-NmVPpfDktkySgVGaAveyA vlhlk CYNT_ECOLI : 61- 85: dlfvi RN-AgNiVPsyGpepgGvSAsVeyaV aalrv CYNT_SYNP7 : 61- 85: elfvi RN-AgNlIPpfGaangGeGAsIeyaI aalni YADF_ECOLI : 64- 88: elfvh RNvA-NlVIhtDlnclSvVQyAvdvL evehi YADF_HAEIN : 64- 88: elfvh RNvA-NqVIhtDfnclSvVQyAvdvL kiehi E 5: 33.5401 15( 15) S-[ADS]-S-x(0,1)-R-x(0,2)-P-x(4)-[DNQT]-x(4)-[ADEG]-x(2)-[FMV]-[AIV]-x(4)-[ADN]-x(2)-[PV] Occurences: 15(15) CAH1_FLALI : 162- 190: mvfac SDS-RvcPshvlDfqpgEafVVrnvaNmvP pfdkt CAH2_ARATH : 91- 119: mvfac SDS-RvcPshvlDfhpgDafVVrniaNmvP pfdkv CAH2_FLALI : 22- 50: lvfac SDS-RvcPshilDfqpgEafVVrniaNmvP pydti CAHC_ARATH : 168- 196: mvfac SDS-RvcPshvlDfqpgDafVVrniaNmvP pfdkv CAHC_HORVU : 100- 127: papss SASfR--PklirTtpvqAapVApalmDaaV erlkt CAHC_PEA : 160- 188: mvfac SDS-RvcPshvlDfqpgEafVVrnvaNlvP pydqa CAHC_SPIOL : 151- 179: mvfac SDS-RvcPshvlDfqpgEafMVrniaNmvP vfdkd CAHC_TOBAC : 153- 181: mvfac SDS-RvcPshvlNfqpgEafVVrniaNmvP aydkt CAHX_FLABI : 163- 191: mvfac SDS-RvcPshvlDfqpgEafVVrnvaNmvP pfdkt CAHX_FLABR : 162- 190: mvfac SDS-RvcPshvlDfqpgEafVVrnvaNmvP pfdkt CAHX_FLAPR : 161- 189: mvfac SDS-RvcPshvlDfqpgEafVVrnvaNmvP pfdkt CYNT_ECOLI : 40- 68: lfisc SDS-RlvPelvtQrepgDlfVIrnagNivP sygpe CYNT_SYNP7 : 40- 68: lfitc SDS-RidPnlitQsgmgElfVIrnagNliP pfgaa YADF_ECOLI : 43- 70: lwigc SDS-Rv-PaerlTglepGelFVhrnvAnlV ihtdl YADF_HAEIN : 43- 70: lwigc SDS-Rv-PaeklTnlepGelFVhrnvAnqV ihtdf F 6: 28.4912 15( 15) G-H-x(2)-C-G-[AG]-[IMV]-x-[AG]-[AIL] Occurences: 15(15) CAH1_FLALI : 220- 230: eifvi GHsrCGGIkGL mtfpd CAH2_ARATH : 149- 159: nivvi GHsaCGGIkGL msfpl CAH2_FLALI : 80- 90: nivvi GHscCGGIkGL msipd CAHC_ARATH : 226- 236: nivvi GHsaCGGIkGL msfpl CAHC_HORVU : 224- 234: vivvi GHsrCGGIkAL lslkd CAHC_PEA : 218- 228: nivvi GHsaCGGIkGL lsfpf CAHC_SPIOL : 209- 219: nivvi GHsaCGGIkGL msfpd CAHC_TOBAC : 211- 221: nivvi GHsaCGGIkGL mslpa CAHX_FLABI : 221- 231: eifvi GHsrCGGIkGL mtfpd CAHX_FLABR : 220- 230: eifvi GHsrCGGIkGL mtfpd CAHX_FLAPR : 219- 229: eifvi GHsrCGGIkGL mtfpd CYNT_ECOLI : 97- 107: divic GHsnCGAMtAI ascqc CYNT_SYNP7 : 97- 107: hvvvc GHshCGAMkGL lklnq YADF_ECOLI : 97- 107: hiiic GHygCGGVqAA venpe YADF_HAEIN : 97- 107: hiiic GHtnCGGIhAA madkd G 7: 26.9991 15( 15) G-H-x(1,2)-C-x(0,1)-G-[AGI]-[IMV]-x-[AG]-[AIL] Occurences: 15(15) CAH1_FLALI : 220- 230: eifvi GHsrC-GGIkGL mtfpd CAH2_ARATH : 149- 159: nivvi GHsaC-GGIkGL msfpl CAH2_FLALI : 80- 90: nivvi GHscC-GGIkGL msipd CAH2_FLALI : 80- 90: nivvi GHs-CcGGIkGL msipd CAHC_ARATH : 226- 236: nivvi GHsaC-GGIkGL msfpl CAHC_HORVU : 224- 234: vivvi GHsrC-GGIkAL lslkd CAHC_PEA : 218- 228: nivvi GHsaC-GGIkGL lsfpf CAHC_SPIOL : 209- 219: nivvi GHsaC-GGIkGL msfpd CAHC_TOBAC : 211- 221: nivvi GHsaC-GGIkGL mslpa CAHX_FLABI : 221- 231: eifvi GHsrC-GGIkGL mtfpd CAHX_FLABR : 220- 230: eifvi GHsrC-GGIkGL mtfpd CAHX_FLAPR : 219- 229: eifvi GHsrC-GGIkGL mtfpd CYNT_ECOLI : 97- 107: divic GHsnC-GAMtAI ascqc CYNT_SYNP7 : 97- 107: hvvvc GHshC-GAMkGL lklnq YADF_ECOLI : 97- 107: hiiic GHygC-GGVqAA venpe YADF_HAEIN : 97- 107: hiiic GHtnC-GGIhAA madkd H 8: 26.9541 15( 15) Y-[ADE]-V-x(4,5)-V-x(2)-[GI]-x(3)-[GST]-x(3)-[CT]-[GL] Occurences: 15(15) CAH1_FLALI : 206- 225: gaave YAVlhlk-VqeIfviGhsrCG gikgl CAH2_ARATH : 135- 154: gaaie YAVlhlk-VenIvviGhsaCG gikgl CAH2_FLALI : 66- 85: gaaie YAVlhlk-VenIvviGhscCG gikgl CAHC_ARATH : 212- 231: gaaie YAVlhlk-VenIvviGhsaCG gikgl CAHC_HORVU : 210- 229: gsaie YAVcalk-VevIvviGhsrCG gikal CAHC_PEA : 204- 223: gaaie YAVlhlk-VsnIvviGhsaCG gikgl CAHC_SPIOL : 195- 214: gaaie YAVlhlk-VenIvviGhsaCG gikgl CAHC_TOBAC : 197- 216: gaaie YAVlhlk-VenIvviGhsaCG gikgl CAHX_FLABI : 207- 226: gaave YAVlhlk-VqeIfviGhsrCG gikgl CAHX_FLABR : 206- 225: gaave YAVlhlk-VqeIfviGhsrCG gikgl CAHX_FLAPR : 205- 224: gaave YAVlhlk-VqeIfviGhsrCG gikgl CYNT_ECOLI : 83- 102: sasve YAVaalr-VsdIvicGhsnCG amtai CYNT_SYNP7 : 184- 203: ifgwi YEVesge-VlqIsrtSsddTG idecp YADF_ECOLI : 83- 102: lsvvq YAVdvle-VehIiicGhygCG gvqaa YADF_HAEIN : 181- 201: lhgwv YDVndgflVdqGvmaTsreTL eisyr I 9: 26.6994 15( 15) C-[AS]-D-S-R-x(1,2)-P-x(1,3)-L Occurences: 15(15) CAH1_FLALI : 161- 172: fmvfa CSDSRvcPshvL dfqpg CAH2_ARATH : 90- 101: ymvfa CSDSRvcPshvL dfhpg CAH2_FLALI : 21- 32: flvfa CSDSRvcPshiL dfqpg CAHC_ARATH : 167- 178: ymvfa CSDSRvcPshvL dfqpg CAHC_HORVU : 165- 176: ymvfa CADSRvcPsvtL glepg CAHC_PEA : 159- 170: fmvfa CSDSRvcPshvL dfqpg CAHC_SPIOL : 150- 161: fmvfa CSDSRvcPshvL dfqpg CAHC_TOBAC : 152- 163: fmvfa CSDSRvcPshvL nfqpg CAHX_FLABI : 162- 173: fmvfa CSDSRvcPshvL dfqpg CAHX_FLABR : 161- 172: fmvfa CSDSRvcPshvL dfqpg CAHX_FLAPR : 160- 171: fmvfa CSDSRvcPshvL dfqpg CYNT_ECOLI : 39- 48: tlfis CSDSRlvPe--L vtqre CYNT_SYNP7 : 39- 48: vlfit CSDSRidPn--L itqsg YADF_ECOLI : 42- 52: flwig CSDSRv-PaerL tglep YADF_HAEIN : 42- 52: ylwig CSDSRv-PaekL tnlep J 10: 26.3525 15( 15) I-x-[IPV]-x-G-x(3)-[CG]-G-[AEG]-x(2)-[AGS]-[AIL] Occurences: 15(15) CAH1_FLALI : 216- 230: lkvqe IfViGhsrCGGikGL mtfpd CAH2_ARATH : 145- 159: lkven IvViGhsaCGGikGL msfpl CAH2_FLALI : 76- 90: lkven IvViGhscCGGikGL msipd CAHC_ARATH : 222- 236: lkven IvViGhsaCGGikGL msfpl CAHC_HORVU : 220- 234: lkvev IvViGhsrCGGikAL lslkd CAHC_PEA : 214- 228: lkvsn IvViGhsaCGGikGL lsfpf CAHC_SPIOL : 205- 219: lkven IvViGhsaCGGikGL msfpd CAHC_TOBAC : 207- 221: lkven IvViGhsaCGGikGL mslpa CAHX_FLABI : 217- 231: lkvqe IfViGhsrCGGikGL mtfpd CAHX_FLABR : 216- 230: lkvqe IfViGhsrCGGikGL mtfpd CAHX_FLAPR : 215- 229: lkvqe IfViGhsrCGGikGL mtfpd CYNT_ECOLI : 93- 107: lrvsd IvIcGhsnCGAmtAI ascqc CYNT_SYNP7 : 67- 81: nagnl IpPfGaanGGEgaSI eyaia YADF_ECOLI : 93- 107: leveh IiIcGhygCGGvqAA venpe YADF_HAEIN : 93- 107: lkieh IiIcGhtnCGGihAA madkd K 11: 24.3212 15( 15) H-x(2)-C-G-[AG]-[IMV]-x-[AG]-[AIL] Occurences: 15(15) CAH1_FLALI : 221- 230: ifvig HsrCGGIkGL mtfpd CAH2_ARATH : 150- 159: ivvig HsaCGGIkGL msfpl CAH2_FLALI : 81- 90: ivvig HscCGGIkGL msipd CAHC_ARATH : 227- 236: ivvig HsaCGGIkGL msfpl CAHC_HORVU : 225- 234: ivvig HsrCGGIkAL lslkd CAHC_PEA : 219- 228: ivvig HsaCGGIkGL lsfpf CAHC_SPIOL : 210- 219: ivvig HsaCGGIkGL msfpd CAHC_TOBAC : 212- 221: ivvig HsaCGGIkGL mslpa CAHX_FLABI : 222- 231: ifvig HsrCGGIkGL mtfpd CAHX_FLABR : 221- 230: ifvig HsrCGGIkGL mtfpd CAHX_FLAPR : 220- 229: ifvig HsrCGGIkGL mtfpd CYNT_ECOLI : 98- 107: ivicg HsnCGAMtAI ascqc CYNT_SYNP7 : 98- 107: vvvcg HshCGAMkGL lklnq YADF_ECOLI : 98- 107: iiicg HygCGGVqAA venpe YADF_HAEIN : 98- 107: iiicg HtnCGGIhAA madkd L 12: 20.6173 16( 15) I-x(1,2)-H-x(2,3)-C-G-x(3)-[ACG]-[AGIL] Occurences: 16(15) CAH1_FLALI : 219- 230: qeifv Ig-Hsr-CGgikGL mtfpd CAH2_ARATH : 148- 159: enivv Ig-Hsa-CGgikGL msfpl CAH2_FLALI : 79- 90: enivv Ig-Hsc-CGgikGL msipd CAHC_ARATH : 225- 236: enivv Ig-Hsa-CGgikGL msfpl CAHC_HORVU : 223- 234: evivv Ig-Hsr-CGgikAL lslkd CAHC_PEA : 217- 228: snivv Ig-Hsa-CGgikGL lsfpf CAHC_SPIOL : 208- 219: enivv Ig-Hsa-CGgikGL msfpd CAHC_TOBAC : 210- 221: enivv Ig-Hsa-CGgikGL mslpa CAHX_FLABI : 220- 231: qeifv Ig-Hsr-CGgikGL mtfpd CAHX_FLABR : 219- 230: qeifv Ig-Hsr-CGgikGL mtfpd CAHX_FLAPR : 218- 229: qeifv Ig-Hsr-CGgikGL mtfpd CYNT_ECOLI : 95- 107: vsdiv IcgHsn-CGamtAI ascqc CYNT_SYNP7 : 90- 102: iaaln Ie-HvvvCGhshCG amkgl YADF_ECOLI : 95- 107: vehii IcgHyg-CGgvqAA venpe YADF_HAEIN : 90- 102: vdvlk Ie-HiiiCGhtnCG gihaa YADF_HAEIN : 95- 107: iehii IcgHtn-CGgihAA madkd M 13: 20.5523 24( 15) V-x(2,4)-H-x(2,3)-C-G-x(3)-[ACG]-[GIL] Occurences: 24(15) CAH1_FLALI : 218- 230: vqeif Vig--Hsr-CGgikGL mtfpd CAH2_ARATH : 146- 159: kveni Vvig-Hsa-CGgikGL msfpl CAH2_ARATH : 147- 159: veniv Vig--Hsa-CGgikGL msfpl CAH2_FLALI : 77- 90: kveni Vvig-Hsc-CGgikGL msipd CAH2_FLALI : 78- 90: veniv Vig--Hsc-CGgikGL msipd CAHC_ARATH : 223- 236: kveni Vvig-Hsa-CGgikGL msfpl CAHC_ARATH : 224- 236: veniv Vig--Hsa-CGgikGL msfpl CAHC_HORVU : 221- 234: kvevi Vvig-Hsr-CGgikAL lslkd CAHC_HORVU : 222- 234: veviv Vig--Hsr-CGgikAL lslkd CAHC_PEA : 215- 228: kvsni Vvig-Hsa-CGgikGL lsfpf CAHC_PEA : 216- 228: vsniv Vig--Hsa-CGgikGL lsfpf CAHC_SPIOL : 206- 219: kveni Vvig-Hsa-CGgikGL msfpd CAHC_SPIOL : 207- 219: veniv Vig--Hsa-CGgikGL msfpd CAHC_TOBAC : 208- 221: kveni Vvig-Hsa-CGgikGL mslpa CAHC_TOBAC : 209- 221: veniv Vig--Hsa-CGgikGL mslpa CAHX_FLABI : 219- 231: vqeif Vig--Hsr-CGgikGL mtfpd CAHX_FLABR : 218- 230: vqeif Vig--Hsr-CGgikGL mtfpd CAHX_FLAPR : 217- 229: vqeif Vig--Hsr-CGgikGL mtfpd CYNT_ECOLI : 94- 107: rvsdi Vicg-Hsn-CGamtAI ascqc CYNT_SYNP7 : 93- 107: lnieh VvvcgHsh-CGamkGL lklnq CYNT_SYNP7 : 94- 107: niehv Vvcg-Hsh-CGamkGL lklnq CYNT_SYNP7 : 95- 107: iehvv Vcg--Hsh-CGamkGL lklnq YADF_ECOLI : 87- 102: qyavd VleveHiiiCGhygCG gvqaa YADF_HAEIN : 87- 102: qyavd VlkieHiiiCGhtnCG gihaa N 14: 20.3213 15( 15) E-x(2,4)-V-x(3,4)-V-[AE]-x(2)-V-[AILPV] Occurences: 15(15) CAH1_FLALI : 178- 190: dfqpg Eaf--Vvrn-VAnmVP pfdkt CAH2_ARATH : 134- 147: vgaai Eya--VlhlkVEniVV ighsa CAH2_FLALI : 65- 78: agaai Eya--VlhlkVEniVV ighsc CAHC_ARATH : 211- 224: vgaai Eya--VlhlkVEniVV ighsa CAHC_HORVU : 209- 222: vgsai Eya--VcalkVEviVV ighsr CAHC_PEA : 176- 188: dfqpg Eaf--Vvrn-VAnlVP pydqa CAHC_SPIOL : 194- 207: vgaai Eya--VlhlkVEniVV ighsa CAHC_TOBAC : 196- 209: vgaai Eya--VlhlkVEniVV ighsa CAHX_FLABI : 179- 191: dfqpg Eaf--Vvrn-VAnmVP pfdkt CAHX_FLABR : 178- 190: dfqpg Eaf--Vvrn-VAnmVP pfdkt CAHX_FLAPR : 177- 189: dfqpg Eaf--Vvrn-VAnmVP pfdkt CYNT_ECOLI : 73- 86: psygp Epgg-Vsas-VEyaVA alrvs CYNT_SYNP7 : 142- 156: nysgy EtddlVeil-VAenVL tqien YADF_ECOLI : 59- 71: glepg Elf--Vhrn-VAnlVI htdln YADF_HAEIN : 59- 71: nlepg Elf--Vhrn-VAnqVI htdfn O 15: 19.3503 15( 15) D-S-R-x(1,2)-P-x(1,3)-L Occurences: 15(15) CAH1_FLALI : 163- 172: vfacs DSRvcPshvL dfqpg CAH2_ARATH : 92- 101: vfacs DSRvcPshvL dfhpg CAH2_FLALI : 23- 32: vfacs DSRvcPshiL dfqpg CAHC_ARATH : 169- 178: vfacs DSRvcPshvL dfqpg CAHC_HORVU : 167- 176: vfaca DSRvcPsvtL glepg CAHC_PEA : 161- 170: vfacs DSRvcPshvL dfqpg CAHC_SPIOL : 152- 161: vfacs DSRvcPshvL dfqpg CAHC_TOBAC : 154- 163: vfacs DSRvcPshvL nfqpg CAHX_FLABI : 164- 173: vfacs DSRvcPshvL dfqpg CAHX_FLABR : 163- 172: vfacs DSRvcPshvL dfqpg CAHX_FLAPR : 162- 171: vfacs DSRvcPshvL dfqpg CYNT_ECOLI : 41- 48: fiscs DSRlvPe--L vtqre CYNT_SYNP7 : 41- 48: fitcs DSRidPn--L itqsg YADF_ECOLI : 44- 52: wigcs DSRv-PaerL tglep YADF_HAEIN : 44- 52: wigcs DSRv-PaekL tnlep P 16: 17.4042 15( 15) E-x(2)-V-x(3,4)-V-x(2,4)-I-x-[GNTV] Occurences: 15(15) CAH1_FLALI : 205- 218: vgaav EyaVlhlkVqe--IfV ighsr CAH2_ARATH : 134- 147: vgaai EyaVlhlkVen--IvV ighsa CAH2_FLALI : 65- 78: agaai EyaVlhlkVen--IvV ighsc CAHC_ARATH : 211- 224: vgaai EyaVlhlkVen--IvV ighsa CAHC_HORVU : 209- 222: vgsai EyaVcalkVev--IvV ighsr CAHC_PEA : 203- 216: tgaai EyaVlhlkVsn--IvV ighsa CAHC_SPIOL : 194- 207: vgaai EyaVlhlkVen--IvV ighsa CAHC_TOBAC : 196- 209: vgaai EyaVlhlkVen--IvV ighsa CAHX_FLABI : 206- 219: vgaav EyaVlhlkVqe--IfV ighsr CAHX_FLABR : 205- 218: vgaav EyaVlhlkVqe--IfV ighsr CAHX_FLAPR : 204- 217: vgaav EyaVlhlkVqe--IfV ighsr CYNT_ECOLI : 82- 97: vsasv EyaVaalrVsdivIcG hsncg CYNT_SYNP7 : 148- 161: tddlv EilVaen-Vltq-IeN lktyp YADF_ECOLI : 59- 73: glepg ElfVhrn-VanlvIhT dlncl YADF_HAEIN : 59- 73: nlepg ElfVhrn-VanqvIhT dfncl Q 17: 15.1802 16( 15) S-R-x(1,2)-P-x(1,3)-L Occurences: 16(15) CAH1_FLALI : 164- 172: facsd SRvcPshvL dfqpg CAH2_ARATH : 93- 101: facsd SRvcPshvL dfhpg CAH2_FLALI : 24- 32: facsd SRvcPshiL dfqpg CAHC_ARATH : 50- 56: sssss SRsvPt--L irnep CAHC_ARATH : 170- 178: facsd SRvcPshvL dfqpg CAHC_HORVU : 168- 176: facad SRvcPsvtL glepg CAHC_PEA : 162- 170: facsd SRvcPshvL dfqpg CAHC_SPIOL : 153- 161: facsd SRvcPshvL dfqpg CAHC_TOBAC : 155- 163: facsd SRvcPshvL nfqpg CAHX_FLABI : 165- 173: facsd SRvcPshvL dfqpg CAHX_FLABR : 164- 172: facsd SRvcPshvL dfqpg CAHX_FLAPR : 163- 171: facsd SRvcPshvL dfqpg CYNT_ECOLI : 42- 48: iscsd SRlvPe--L vtqre CYNT_SYNP7 : 42- 48: itcsd SRidPn--L itqsg YADF_ECOLI : 45- 52: igcsd SRv-PaerL tglep YADF_HAEIN : 45- 52: igcsd SRv-PaekL tnlep R 18: 12.0102 22( 15) L-x(5)-V-x(0,1)-A Occurences: 22(15) CAH1_FLALI : 53- 61: atpps LirnepVfA apapi CAH1_FLALI : 252- 260: wvkvc LpakskVvA ehngt CAH2_ARATH : 181- 189: wvkic LpakskVlA esess CAH2_FLALI : 112- 120: wvklg LpakskVkA ncnnl CAHC_ARATH : 26- 33: lqkls LrtsstV-A clppa CAHC_ARATH : 56- 64: rsvpt LirnepVfA apapi CAHC_HORVU : 107- 115: sfrpk LirttpVqA apvap CAHC_PEA : 48- 56: stfps LiqdkpVfA ssspi CAHC_PEA : 250- 258: wvkig LpakakVkA qhgda CAHC_SPIOL : 44- 52: svpps LirnqpVfA apapi CAHC_SPIOL : 241- 249: wvkic LpakhkVlA ehgna CAHC_TOBAC : 43- 51: tsvps LirnepVfA aptpi CAHX_FLABI : 54- 62: atpps LirnelVfA apapi CAHX_FLABI : 253- 261: wvkvc LpakskVvA ehngt CAHX_FLABR : 53- 61: atpps LirnepVfA apapi CAHX_FLABR : 252- 260: wvkvc LpakskVvA ehngt CAHX_FLAPR : 52- 60: atpps LirnepVfA apapi CAHX_FLAPR : 251- 259: wvkvc LpakskVvA ehngt CYNT_ECOLI : 201- 209: rqfvp LaanprVcA irlrq CYNT_SYNP7 : 227- 234: rcvvp LteevaV-A ppepe YADF_ECOLI : 60- 67: lepge LfvhrnV-A nlvih YADF_HAEIN : 60- 67: lepge LfvhrnV-A nqvih S 19: 12.0102 17( 15) V-x(4,5)-V-x(2)-I Occurences: 17(15) CAH1_FLALI : 208- 216: aveya Vlhlk-VqeI fvigh CAH2_ARATH : 26- 34: ddlkd Vaaak-VkkI tadvq CAH2_ARATH : 137- 145: aieya Vlhlk-VenI vvigh CAH2_FLALI : 68- 76: aieya Vlhlk-VenI vvigh CAHC_ARATH : 103- 111: eelkt Vaaak-VeqI taalq CAHC_ARATH : 214- 222: aieya Vlhlk-VenI vvigh CAHC_HORVU : 212- 220: aieya Vcalk-VevI vvigh CAHC_PEA : 206- 214: aieya Vlhlk-VsnI vvigh CAHC_SPIOL : 197- 205: aieya Vlhlk-VenI vvigh CAHC_TOBAC : 199- 207: aieya Vlhlk-VenI vvigh CAHX_FLABI : 209- 217: aveya Vlhlk-VqeI fvigh CAHX_FLABR : 208- 216: aveya Vlhlk-VqeI fvigh CAHX_FLAPR : 207- 215: aveya Vlhlk-VqeI fvigh CYNT_ECOLI : 85- 93: sveya Vaalr-VsdI vicgh CYNT_SYNP7 : 186- 194: gwiye Vesge-VlqI srtss YADF_ECOLI : 85- 93: vvqya Vdvle-VehI iicgh YADF_HAEIN : 81- 90: nclsv VqyavdVlkI ehiii T 20: 12.0102 15( 15) Y-x-V-x(4,5)-V Occurences: 15(15) CAH1_FLALI : 206- 213: gaave YaVlhlk-V qeifv CAH2_ARATH : 135- 142: gaaie YaVlhlk-V enivv CAH2_FLALI : 66- 73: gaaie YaVlhlk-V enivv CAHC_ARATH : 212- 219: gaaie YaVlhlk-V enivv CAHC_HORVU : 210- 217: gsaie YaVcalk-V evivv CAHC_PEA : 204- 211: gaaie YaVlhlk-V snivv CAHC_SPIOL : 195- 202: gaaie YaVlhlk-V enivv CAHC_TOBAC : 197- 204: gaaie YaVlhlk-V enivv CAHX_FLABI : 207- 214: gaave YaVlhlk-V qeifv CAHX_FLABR : 206- 213: gaave YaVlhlk-V qeifv CAHX_FLAPR : 205- 212: gaave YaVlhlk-V qeifv CYNT_ECOLI : 83- 90: sasve YaVaalr-V sdivi CYNT_SYNP7 : 184- 191: ifgwi YeVesge-V lqisr YADF_ECOLI : 83- 90: lsvvq YaVdvle-V ehiii YADF_HAEIN : 181- 189: lhgwv YdVndgflV dqgvm Number of patterns evaluated by Pratt:1853 Total running time: 2 seconds