------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file PROKAR_ZN_DEPEND_PLPC PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PROKAR_ZN_DEPEND_PLPC.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PHLC_BACCE 283 PHLC_CLOBI 398 PHLC_CLOPE 398 PHLC_LISMO 289 PHLD_BACCE 283 Pratt run started at Thu Feb 6 20:51:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 5( 5) A-x(3)-L-G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 2: 44.8706 5( 5) K-x(3,4)-F-x(1,2)-L-G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(2)-N-x-T 3: 44.3706 5( 5) K-x(2,4)-F-x(1,2)-L-G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(2)-N-x-T 4: 40.7005 5( 5) L-G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 5: 36.5305 5( 5) G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 6: 36.5305 7( 5) F-x(1,2)-L-G-x(3)-H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A 7: 32.3604 5( 5) H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 8: 28.1904 5( 5) Y-x(2)-D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 9: 27.6904 8( 5) L-x(2,4)-H-Y-x(2)-D-x(3)-P-x-H-x(0,1)-A 10: 24.0203 5( 5) D-x(3)-P-x-H-x(0,1)-A-x(0,1)-N-x-T 11: 24.0203 5( 5) Y-x(2)-D-x(3)-P-Y-x(4,5)-T-x(2,3)-S 12: 24.0203 7( 5) L-x(4,5)-Y-x(2)-D-x(3)-P-x(3,4)-N-x-T 13: 19.8503 5( 5) P-x-H-x(0,1)-A-x(0,1)-N-x-T 14: 19.8503 5( 5) P-x(4)-N-F-x(3,4)-S-x(0,1)-Y 15: 19.8503 5( 5) D-x(3)-P-Y-x(4,5)-T-x(2,3)-S 16: 19.3503 5( 5) A-x(3,4)-A-x(0,2)-D-x(4)-V-x(3)-T 17: 19.3503 5( 5) H-x(2)-N-x-T-x(2,3)-S-x(1,3)-G 18: 19.3503 5( 5) A-x(0,2)-Y-x(0,1)-L-x(5)-Y-x(2)-D 19: 19.3503 5( 5) S-x(3,4)-S-H-x(2,4)-D-x-D 20: 19.3503 5( 5) D-x(2)-N-x(3,4)-D-x-S-x(3,5)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 92.5943 5( 5) K-x(3,4)-F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-[AP]-[ANS]-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] B 2: 92.0943 5( 5) K-x(2,4)-F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-[AP]-[ANS]-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] C 3: 89.9073 5( 5) A-x-[FY]-x-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] D 4: 82.5527 5( 5) L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] E 5: 78.3827 5( 5) G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] F 6: 71.8318 7( 5) F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-[ANS]-[NV]-x-[AT]-[ANV]-x-[DS]-x-[GP] G 7: 68.7304 5( 5) H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] H 8: 64.5603 5( 5) Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] I 9: 61.9517 5( 5) H-[AP]-[ANS]-N-[FV]-T-x(2,3)-S-x(1,3)-G-[FHY]-x(4)-[ET]-x(3)-[DE]-x(2)-[DEK]-x(4)-[ANV]-T-[ADES]-[DG]-x(4)-[ENRS]-x(4)-[DEN]-[AIPV]-x-[DEK] J 10: 61.0565 5( 5) A-x-[FY]-x-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N K 11: 59.7987 5( 5) L-x(4,5)-Y-x-[AGT]-D-[ILV]-[DNS]-[QT]-P-x(3,4)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] L 12: 57.5095 8( 5) L-x(2,4)-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-[ANS]-[NV]-x-[AT]-[ANV]-x-[DS]-x-[GP] M 13: 57.1899 5( 5) D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] N 14: 53.9904 5( 5) A-x(0,2)-Y-x(0,1)-L-x(2)-[ADS]-x-[FH]-Y-x-[GPT]-D-x-[DGNS]-[NQT]-[NP]-x(2)-[AIP]-[ADN]-N-x(3)-[AILV]-[DS]-x-[AP] O 15: 53.7019 5( 5) L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N P 16: 49.5318 5( 5) G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N Q 17: 44.5310 5( 5) P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] R 18: 44.0065 5( 5) Y-x-[AG]-D-x(2)-[NT]-P-Y-x(4,5)-T-x(2,3)-S-x(2)-[HY]-[DNV]-x(2)-[ENR]-[DGT]-x-[ATV] S 19: 39.8795 5( 5) H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N T 20: 36.6663 5( 5) D-x(2)-[NT]-P-Y-x(4,5)-T-x(2,3)-S-x(2)-[HY]-[DNV]-x(2)-[ENR]-[DGT]-x-[ATV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 92.5943 5( 5) K-x(3,4)-F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-[AP]-[ANS]-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 145- 188: knkdm Kqaf-Fy-LGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 141- 184: ekgnf Keat-Fl-LGqGLHYlGDLNTPyHASNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 143- 186: qrgny Kqat-Fy-LGeAMHYfGDIDTPyHPANVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 156- 201: dyreg KfdtaFykLGlAIHYyTDISQPmHANNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 145- 188: knkdm Kqaf-Fy-LGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn B 2: 92.0943 5( 5) K-x(2,4)-F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-[AP]-[ANS]-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 145- 188: knkdm Kqaf-Fy-LGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 145- 188: knkdm Kqa--FfyLGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 141- 184: ekgnf Keat-Fl-LGqGLHYlGDLNTPyHASNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 143- 186: qrgny Kqat-Fy-LGeAMHYfGDIDTPyHPANVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 156- 201: dyreg KfdtaFykLGlAIHYyTDISQPmHANNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 145- 188: knkdm Kqaf-Fy-LGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 145- 188: knkdm Kqa--FfyLGlSLHYlGDVNQPmHAANFTNLSyPqgfHskyeNfvD tikdn C 3: 89.9073 5( 5) A-x-[FY]-x-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 147- 188: kdmkq AfFyLGlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 147- 188: kdmkq AfFyLGlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 143- 184: gnfke AtFlLGqGLHYlGDLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 145- 186: gnykq AtFyLGeAMHYfGDIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 160- 201: gkfdt AfYkLGlAIHYyTDISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 147- 188: kdmkq AfFyLGlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 147- 188: kdmkq AfFyLGlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn D 4: 82.5527 5( 5) L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 151- 188: qaffy LGlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 151- 188: qaffy LGlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 147- 184: eatfl LGqGLHYlGDLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 149- 186: qatfy LGeAMHYfGDIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 164- 201: tafyk LGlAIHYyTDISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 151- 188: qaffy LGlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 151- 188: qaffy LGlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn E 5: 78.3827 5( 5) G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 152- 188: affyl GlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 152- 188: affyl GlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 148- 184: atfll GqGLHYlGDLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 150- 186: atfyl GeAMHYfGDIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 165- 201: afykl GlAIHYyTDISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 152- 188: affyl GlSLHYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 152- 188: affyl GlSLHYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn F 6: 71.8318 7( 5) F-x(1,2)-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-[ANS]-[NV]-x-[AT]-[ANV]-x-[DS]-x-[GP] Occurences: 7(5) PHLC_BACCE : 148- 176: dmkqa FfyLGlSLHYlGDVNQPmH-AANfTNlSyP qgfhs PHLC_BACCE : 149- 176: mkqaf Fy-LGlSLHYlGDVNQPmH-AANfTNlSyP qgfhs PHLC_CLOBI : 145- 172: fkeat Fl-LGqGLHYlGDLNTPyH-ASNvTAvDsP ghvky PHLC_CLOPE : 147- 175: ykqat Fy-LGeAMHYfGDIDTPyHpANVtAVdSaG hvkfe PHLC_LISMO : 161- 189: kfdta FykLGlAIHYyTDISQPmH-ANNfTAiSyP pgyhc PHLD_BACCE : 148- 176: dmkqa FfyLGlSLHYlGDVNQPmH-AANfTNlSyP qgfhs PHLD_BACCE : 149- 176: mkqaf Fy-LGlSLHYlGDVNQPmH-AANfTNlSyP qgfhs G 7: 68.7304 5( 5) H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 156- 188: lglsl HYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 156- 188: lglsl HYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 152- 184: lgqgl HYlGDLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 154- 186: lgeam HYfGDIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 169- 201: lglai HYyTDISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 156- 188: lglsl HYlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 156- 188: lglsl HYlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn H 8: 64.5603 5( 5) Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 157- 188: glslh YlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 157- 188: glslh YlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 153- 184: gqglh YlGDLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 155- 186: geamh YfGDIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 170- 201: glaih YyTDISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 157- 188: glslh YlGDVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 157- 188: glslh YlGDVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn I 9: 61.9517 5( 5) H-[AP]-[ANS]-N-[FV]-T-x(2,3)-S-x(1,3)-G-[FHY]-x(4)-[ET]-x(3)-[DE]-x(2)-[DEK]-x(4)-[ANV]-T-[ADES]-[DG]-x(4)-[ENRS]-x(4)-[DEN]-[AIPV]-x-[DEK] Occurences: 5(5) PHLC_BACCE : 166- 212: vnqpm HAANFTnl-SypqGFhskyEnfvDtiKdnykVTDGngywNwkgtNPeE wihga PHLC_CLOBI : 162- 207: lntpy HASNVTavdSp--GHvkyeTfveErkDnyalNTSGndttSgvykEAmE npsfn PHLC_CLOPE : 164- 209: idtpy HPANVTavdSa--GHvkfeTfaeErkEqykiNTAGcktnEafytDIlK nkdfn PHLC_LISMO : 179- 225: isqpm HANNFTai-SyppGYhcayEnyvDtiKhnyqATEDmvakRfcsdDVkD wlyen PHLD_BACCE : 166- 212: vnqpm HAANFTnl-SypqGFhskyEnfvDtiKdnykVTDGngywNwkgtNPeD wihga J 10: 61.0565 5( 5) A-x-[FY]-x-L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N Occurences: 5(5) PHLC_BACCE : 147- 169: kdmkq AfFyLGlSLHYlGDVNQPmHaA-N ftnls PHLC_BACCE : 147- 169: kdmkq AfFyLGlSLHYlGDVNQPmH-AaN ftnls PHLC_CLOBI : 143- 165: gnfke AtFlLGqGLHYlGDLNTPyH-AsN vtavd PHLC_CLOPE : 145- 167: gnykq AtFyLGeAMHYfGDIDTPyHpA-N vtavd PHLC_LISMO : 160- 182: gkfdt AfYkLGlAIHYyTDISQPmH-AnN ftais PHLD_BACCE : 147- 169: kdmkq AfFyLGlSLHYlGDVNQPmHaA-N ftnls PHLD_BACCE : 147- 169: kdmkq AfFyLGlSLHYlGDVNQPmH-AaN ftnls K 11: 59.7987 5( 5) L-x(4,5)-Y-x-[AGT]-D-[ILV]-[DNS]-[QT]-P-x(3,4)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 151- 188: qaffy LglslhYlGDVNQPmhaaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 147- 184: eatfl LgqglhYlGDLNTPyhasNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 149- 186: qatfy LgeamhYfGDIDTPyhpaNVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 164- 201: tafyk LglaihYyTDISQPmhanNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 151- 188: qaffy LglslhYlGDVNQPmhaaNFTNLSyPqgfHskyeNfvD tikdn L 12: 57.5095 8( 5) L-x(2,4)-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-[ANS]-[NV]-x-[AT]-[ANV]-x-[DS]-x-[GP] Occurences: 8(5) PHLC_BACCE : 151- 176: qaffy LglslHYlGDVNQPmH-AANfTNlSyP qgfhs PHLC_BACCE : 153- 176: ffylg Lsl--HYlGDVNQPmH-AANfTNlSyP qgfhs PHLC_CLOBI : 147- 172: eatfl LgqglHYlGDLNTPyH-ASNvTAvDsP ghvky PHLC_CLOPE : 149- 175: qatfy LgeamHYfGDIDTPyHpANVtAVdSaG hvkfe PHLC_LISMO : 164- 189: tafyk LglaiHYyTDISQPmH-ANNfTAiSyP pgyhc PHLC_LISMO : 166- 189: fyklg Lai--HYyTDISQPmH-ANNfTAiSyP pgyhc PHLD_BACCE : 151- 176: qaffy LglslHYlGDVNQPmH-AANfTNlSyP qgfhs PHLD_BACCE : 153- 176: ffylg Lsl--HYlGDVNQPmH-AANfTNlSyP qgfhs M 13: 57.1899 5( 5) D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 160- 188: lhylg DVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 160- 188: lhylg DVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 156- 184: lhylg DLNTPyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 158- 186: mhyfg DIDTPyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 173- 201: ihyyt DISQPmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 160- 188: lhylg DVNQPmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 160- 188: lhylg DVNQPmH-AaNFTNLSyPqgfHskyeNfvD tikdn N 14: 53.9904 5( 5) A-x(0,2)-Y-x(0,1)-L-x(2)-[ADS]-x-[FH]-Y-x-[GPT]-D-x-[DGNS]-[NQT]-[NP]-x(2)-[AIP]-[ADN]-N-x(3)-[AILV]-[DS]-x-[AP] Occurences: 5(5) PHLC_BACCE : 147- 176: kdmkq AffY-LglSlHYlGDvNQPmhAANftnLSyP qgfhs PHLC_CLOBI : 87- 115: dydpn A--YdLyqDhFYdPDtGNNftIDNswyASyP iydts PHLC_CLOPE : 145- 174: gnykq AtfY-LgeAmHYfGDiDTPyhPANvtaVDsA ghvkf PHLC_LISMO : 160- 189: gkfdt Af-YkLglAiHYyTDiSQPmhANNftaISyP pgyhc PHLD_BACCE : 147- 176: kdmkq AffY-LglSlHYlGDvNQPmhAANftnLSyP qgfhs O 15: 53.7019 5( 5) L-G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N Occurences: 5(5) PHLC_BACCE : 151- 169: qaffy LGlSLHYlGDVNQPmHaA-N ftnls PHLC_BACCE : 151- 169: qaffy LGlSLHYlGDVNQPmH-AaN ftnls PHLC_CLOBI : 147- 165: eatfl LGqGLHYlGDLNTPyH-AsN vtavd PHLC_CLOPE : 149- 167: qatfy LGeAMHYfGDIDTPyHpA-N vtavd PHLC_LISMO : 164- 182: tafyk LGlAIHYyTDISQPmH-AnN ftais PHLD_BACCE : 151- 169: qaffy LGlSLHYlGDVNQPmHaA-N ftnls PHLD_BACCE : 151- 169: qaffy LGlSLHYlGDVNQPmH-AaN ftnls P 16: 49.5318 5( 5) G-x-[AGS]-[ILM]-H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N Occurences: 5(5) PHLC_BACCE : 152- 169: affyl GlSLHYlGDVNQPmHaA-N ftnls PHLC_BACCE : 152- 169: affyl GlSLHYlGDVNQPmH-AaN ftnls PHLC_CLOBI : 148- 165: atfll GqGLHYlGDLNTPyH-AsN vtavd PHLC_CLOPE : 150- 167: atfyl GeAMHYfGDIDTPyHpA-N vtavd PHLC_LISMO : 165- 182: afykl GlAIHYyTDISQPmH-AnN ftais PHLD_BACCE : 152- 169: affyl GlSLHYlGDVNQPmHaA-N ftnls PHLD_BACCE : 152- 169: affyl GlSLHYlGDVNQPmH-AaN ftnls Q 17: 44.5310 5( 5) P-x-H-x(0,1)-A-x(0,1)-N-[FV]-T-[AN]-[ILV]-[DS]-x-[AP]-x(3)-[HK]-x(4)-[ANV]-x(2)-[DR] Occurences: 5(5) PHLC_BACCE : 164- 188: gdvnq PmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLC_BACCE : 164- 188: gdvnq PmH-AaNFTNLSyPqgfHskyeNfvD tikdn PHLC_CLOBI : 160- 184: gdlnt PyH-AsNVTAVDsPghvKyetfVeeR kdnya PHLC_CLOPE : 162- 186: gdidt PyHpA-NVTAVDsAghvKfetfAeeR keqyk PHLC_LISMO : 177- 201: tdisq PmH-AnNFTAISyPpgyHcayeNyvD tikhn PHLD_BACCE : 164- 188: gdvnq PmHaA-NFTNLSyPqgfHskyeNfvD tikdn PHLD_BACCE : 164- 188: gdvnq PmH-AaNFTNLSyPqgfHskyeNfvD tikdn R 18: 44.0065 5( 5) Y-x-[AG]-D-x(2)-[NT]-P-Y-x(4,5)-T-x(2,3)-S-x(2)-[HY]-[DNV]-x(2)-[ENR]-[DGT]-x-[ATV] Occurences: 5(5) PHLC_BACCE : 90- 116: lengi YaADyeNPYydns-Tfa-ShfYDpdNGkT yipfa PHLC_CLOBI : 153- 181: gqglh YlGDlnTPYhasnvTavdSpgHVkyETfV eerkd PHLC_CLOPE : 155- 183: geamh YfGDidTPYhpanvTavdSagHVkfETfA eerke PHLC_LISMO : 103- 129: iaqgi YdADhkNPYydts-Tfl-ShfYNpdRDnT ylpgf PHLD_BACCE : 90- 116: lengi YaADyeNPYydns-Tfa-ShfYDpdNGkT yipya S 19: 39.8795 5( 5) H-Y-x-[GT]-D-[ILV]-[DNS]-[QT]-P-x-H-x(0,1)-A-x(0,1)-N Occurences: 5(5) PHLC_BACCE : 156- 169: lglsl HYlGDVNQPmHaA-N ftnls PHLC_BACCE : 156- 169: lglsl HYlGDVNQPmH-AaN ftnls PHLC_CLOBI : 152- 165: lgqgl HYlGDLNTPyH-AsN vtavd PHLC_CLOPE : 154- 167: lgeam HYfGDIDTPyHpA-N vtavd PHLC_LISMO : 169- 182: lglai HYyTDISQPmH-AnN ftais PHLD_BACCE : 156- 169: lglsl HYlGDVNQPmHaA-N ftnls PHLD_BACCE : 156- 169: lglsl HYlGDVNQPmH-AaN ftnls T 20: 36.6663 5( 5) D-x(2)-[NT]-P-Y-x(4,5)-T-x(2,3)-S-x(2)-[HY]-[DNV]-x(2)-[ENR]-[DGT]-x-[ATV] Occurences: 5(5) PHLC_BACCE : 93- 116: giyaa DyeNPYydns-Tfa-ShfYDpdNGkT yipfa PHLC_CLOBI : 156- 181: lhylg DlnTPYhasnvTavdSpgHVkyETfV eerkd PHLC_CLOPE : 158- 183: mhyfg DidTPYhpanvTavdSagHVkfETfA eerke PHLC_LISMO : 106- 129: giyda DhkNPYydts-Tfl-ShfYNpdRDnT ylpgf PHLD_BACCE : 93- 116: giyaa DyeNPYydns-Tfa-ShfYDpdNGkT yipya Number of patterns evaluated by Pratt:8143 Total running time: 3 seconds