------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file PPTA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PPTA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BET4_YEAST 290 PFTA_BOVIN 340 PFTA_RAT 377 RAM2_YEAST 316 Pratt run started at Thu Feb 6 20:50:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 4( 4) E-L-x(5)-L-x(1,2)-E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(5)-N 2: 31.3604 4( 4) D-x(2,4)-E-x(2,4)-Y-x(4)-I-x(5)-N-x-S-A-W 3: 29.1904 4( 4) T-x-E-x(5)-P-x(5)-W-N-Y-x(3)-I 4: 28.1904 4( 4) D-x(2,3)-E-x(2,3)-Y-x(4)-I-x(5)-N-x(3)-W-x(2)-R 5: 28.1904 4( 4) D-x(2,3)-E-x(1,2)-Y-x(4)-I-x(5)-N-x(3)-W-x(2)-R 6: 28.1904 5( 4) L-x(0,1)-E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(5)-N 7: 28.1904 6( 4) L-x(1,2)-E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(5)-N 8: 28.1904 4( 4) L-x(2,3)-D-x(1,2)-K-x-Y-x(2)-W-x(2)-R-x-W 9: 27.6904 4( 4) D-x(1,3)-E-x(2,3)-Y-x(4)-I-x(5)-N-x(3)-W-x(2)-R 10: 27.6904 4( 4) L-x-E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(2,4)-V 11: 27.6904 5( 4) L-x(1,2)-D-x(1,3)-K-x-Y-x(2)-W-x(2)-R-x-W 12: 27.6904 5( 4) L-x(1,3)-D-x(1,2)-K-x-Y-x(2)-W-x(2)-R-x-W 13: 25.0203 4( 4) Y-x(4)-I-x(5)-N-x-S-A-W 14: 25.0203 4( 4) D-x(2)-N-Y-H-x-W-x(2)-R 15: 24.5203 4( 4) E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(5)-N 16: 23.5203 4( 4) Y-x(4)-I-x(3)-P-x(0,2)-K-N-x(3,4)-H 17: 23.5203 4( 4) E-x(0,1)-D-x(2)-N-x(3)-W-x(2)-R-x(2,4)-V 18: 23.5203 4( 4) P-K-x-Y-x(0,2)-W-x(5)-L-x(2,3)-L 19: 23.0203 4( 4) K-x(3,5)-E-x(3)-I-x(1,3)-I-x(5)-N-x(3)-W 20: 23.0203 4( 4) Y-x(2,4)-W-x-H-R-x(1,3)-W-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 97.3473 4( 4) L-x(2,3)-D-x(1,2)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] B 2: 96.8473 5( 4) L-x(1,2)-D-x(1,3)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] C 3: 96.8473 5( 4) L-x(1,3)-D-x(1,2)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] D 4: 87.7055 4( 4) E-L-[AQ]-x-[AV]-[DNS]-x-L-x(1,2)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I E 5: 85.0091 5( 4) L-x(0,1)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N-x-S F 6: 80.8390 6( 4) L-x(1,2)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N G 7: 80.1629 4( 4) D-[AS]-[KR]-N-Y-H-[AGV]-W-x-[HY]-R-x(2)-[CV]-x(3)-[FI]-x(3)-[DQT]-x-[EK]-x(4)-[DES]-[DEQ]-[FL]-x(2)-[ET]-[DT]-[IV]-x(2)-N-[NS]-[ANV]-x-[NST] H 8: 78.6736 4( 4) E-x(0,1)-D-x(2)-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N-x-S I 9: 53.6209 4( 4) L-x-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x(2,4)-V-x-[AGNS]-x-[DET]-[STV]-[GI]-x(3)-[ERS]-[AL]-x(2)-E J 10: 51.8817 4( 4) T-x-E-[ILM]-[IL]-[DEK]-x-[ANV]-P-x(3)-[AST]-[AI]-W-N-Y-x(2)-[DGN]-I-[ILV] K 11: 49.4508 4( 4) E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x(2,4)-V-x-[AGNS]-x-[DET]-[STV]-[GI]-x(3)-[ERS]-[AL]-x(2)-E L 12: 46.1652 4( 4) D-x(2,3)-E-x(2,3)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R M 13: 46.1652 4( 4) D-x(2,3)-E-x(1,2)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R N 14: 45.6652 4( 4) D-x(1,3)-E-x(2,3)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R O 15: 43.7941 4( 4) P-K-[NV]-Y-x(0,2)-W-x-[HWY]-[NR]-x(2)-L-x(2,3)-L-[HKR]-x(2)-[PS]-[QST]-x(4)-[ILV] P 16: 40.3605 4( 4) D-x(2,4)-E-x(2,4)-Y-[AT]-x(3)-I-x(2)-[DNV]-[IP]-x-N-x-S-A-W Q 17: 37.2674 4( 4) K-x(3,5)-E-x-[NQT]-x-I-x(1,3)-I-[ENQ]-x(2)-[IP]-x-N-x-[QS]-[APV]-W R 18: 34.5952 4( 4) Y-x(3)-[AIL]-I-[DEK]-x-[DQ]-P-x(0,2)-K-N-x(3,4)-H-x(2)-[ENR] S 19: 34.0204 4( 4) Y-[AT]-x(3)-I-x(2)-[DNV]-[IP]-x-N-x-S-A-W T 20: 28.3085 4( 4) Y-x(2,4)-W-[NQT]-H-R-x(1,3)-W-V-x(2)-[EHK] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 97.3473 4( 4) L-x(2,3)-D-x(1,2)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] Occurences: 4(4) BET4_YEAST : 58- 106: vfvmm Llk-DypKVYWIWNHRlWVlkhYptsSpKVwqTElAVvNKLlEQDArNyH gwhyr PFTA_BOVIN : 154- 201: fiadi Ltq-Da-KNYHAWQHRqWViqeFklwDnELqyVDqLLkEDVrNNSVwNqR yfvis PFTA_RAT : 193- 240: fiadi Lnq-Da-KNYHAWQHRqWViqeFrlwDnELqyVDqLLkEDVrNNSVwNqR hfvis RAM2_YEAST : 135- 184: lpilk LmidDdsKNYHVWSYRkWCclfFsdfQhELayASdLIeTDIyNNSAwThR mfywv B 2: 96.8473 5( 4) L-x(1,2)-D-x(1,3)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] Occurences: 5(4) BET4_YEAST : 58- 106: vfvmm LlkDyp-KVYWIWNHRlWVlkhYptsSpKVwqTElAVvNKLlEQDArNyH gwhyr BET4_YEAST : 59- 106: fvmml Lk-Dyp-KVYWIWNHRlWVlkhYptsSpKVwqTElAVvNKLlEQDArNyH gwhyr PFTA_BOVIN : 154- 201: fiadi LtqDa--KNYHAWQHRqWViqeFklwDnELqyVDqLLkEDVrNNSVwNqR yfvis PFTA_RAT : 193- 240: fiadi LnqDa--KNYHAWQHRqWViqeFrlwDnELqyVDqLLkEDVrNNSVwNqR hfvis RAM2_YEAST : 135- 184: lpilk LmiDddsKNYHVWSYRkWCclfFsdfQhELayASdLIeTDIyNNSAwThR mfywv C 3: 96.8473 5( 4) L-x(1,3)-D-x(1,2)-K-[NV]-Y-[HW]-[AIV]-W-[NQS]-[HY]-R-x-W-[CV]-x(3)-[FY]-x(3)-[DQS]-x-[EK]-[LV]-x(2)-[ATV]-[DES]-x-[AL]-[ILV]-x-[ENT]-[DK]-[ILV]-x-[EN]-[NQ]-[DS]-[AV]-x-[NT]-x-[HR] Occurences: 5(4) BET4_YEAST : 58- 106: vfvmm Llk-DypKVYWIWNHRlWVlkhYptsSpKVwqTElAVvNKLlEQDArNyH gwhyr BET4_YEAST : 59- 106: fvmml Lk--DypKVYWIWNHRlWVlkhYptsSpKVwqTElAVvNKLlEQDArNyH gwhyr PFTA_BOVIN : 154- 201: fiadi Ltq-Da-KNYHAWQHRqWViqeFklwDnELqyVDqLLkEDVrNNSVwNqR yfvis PFTA_RAT : 193- 240: fiadi Lnq-Da-KNYHAWQHRqWViqeFrlwDnELqyVDqLLkEDVrNNSVwNqR hfvis RAM2_YEAST : 135- 184: lpilk LmidDdsKNYHVWSYRkWCclfFsdfQhELayASdLIeTDIyNNSAwThR mfywv D 4: 87.7055 4( 4) E-L-[AQ]-x-[AV]-[DNS]-x-L-x(1,2)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I Occurences: 4(4) BET4_YEAST : 90- 138: kvwqt ELAvVNkLl-EqDArNyhGWhyRrIvvGNieSitNKSldkEEFEYttikI nnnis PFTA_BOVIN : 180- 228: klwdn ELQyVDqLlkE-DVrNnsVWnqRyFviSNttGynDRAileREVQYtlemI klvph PFTA_RAT : 219- 267: rlwdn ELQyVDqLlkE-DVrNnsVWnqRhFviSNttGysDRAvleREVQYtlemI klvph RAM2_YEAST : 163- 211: sdfqh ELAyASdLi-EtDIyNnsAWthRmFywVNakDviSKVelaDELQFimdkI qlvpq E 5: 85.0091 5( 4) L-x(0,1)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N-x-S Occurences: 5(4) BET4_YEAST : 97- 146: avvnk LlEqDArNyhGWhyRrIvvGNieSitNKSldkEEFEYttikInnNIsNyS awhqr BET4_YEAST : 98- 146: vvnkl L-EqDArNyhGWhyRrIvvGNieSitNKSldkEEFEYttikInnNIsNyS awhqr PFTA_BOVIN : 188- 236: yvdql LkE-DVrNnsVWnqRyFviSNttGynDRAileREVQYtlemIklVPhNeS awnyl PFTA_RAT : 227- 275: yvdql LkE-DVrNnsVWnqRhFviSNttGysDRAvleREVQYtlemIklVPhNeS awnyl RAM2_YEAST : 170- 219: ayasd LiEtDIyNnsAWthRmFywVNakDviSKVelaDELQFimdkIqlVPqNiS pwtyl F 6: 80.8390 6( 4) L-x(1,2)-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N Occurences: 6(4) BET4_YEAST : 97- 144: avvnk Ll-EqDArNyhGWhyRrIvvGNieSitNKSldkEEFEYttikInnNIsN ysawh PFTA_BOVIN : 187- 234: qyvdq LlkE-DVrNnsVWnqRyFviSNttGynDRAileREVQYtlemIklVPhN esawn PFTA_BOVIN : 188- 234: yvdql Lk-E-DVrNnsVWnqRyFviSNttGynDRAileREVQYtlemIklVPhN esawn PFTA_RAT : 226- 273: qyvdq LlkE-DVrNnsVWnqRhFviSNttGysDRAvleREVQYtlemIklVPhN esawn PFTA_RAT : 227- 273: yvdql Lk-E-DVrNnsVWnqRhFviSNttGysDRAvleREVQYtlemIklVPhN esawn RAM2_YEAST : 170- 217: ayasd Li-EtDIyNnsAWthRmFywVNakDviSKVelaDELQFimdkIqlVPqN ispwt G 7: 80.1629 4( 4) D-[AS]-[KR]-N-Y-H-[AGV]-W-x-[HY]-R-x(2)-[CV]-x(3)-[FI]-x(3)-[DQT]-x-[EK]-x(4)-[DES]-[DEQ]-[FL]-x(2)-[ET]-[DT]-[IV]-x(2)-N-[NS]-[ANV]-x-[NST] Occurences: 4(4) BET4_YEAST : 101- 143: klleq DARNYHGWhYRriVvgnIesiTnKsldkEEFeyTTIkiNNNiS nysaw PFTA_BOVIN : 157- 199: diltq DAKNYHAWqHRqwViqeFklwDnElqyvDQLlkEDVrnNSVwN qryfv PFTA_RAT : 196- 238: dilnq DAKNYHAWqHRqwViqeFrlwDnElqyvDQLlkEDVrnNSVwN qrhfv RAM2_YEAST : 140- 182: lmidd DSKNYHVWsYRkwCclfFsdfQhElayaSDLieTDIynNSAwT hrmfy H 8: 78.6736 4( 4) E-x(0,1)-D-x(2)-N-x(2)-[AGV]-W-x(2)-R-x-[FI]-x(2)-[GSV]-N-x(2)-[DGS]-x(2)-[DNS]-[KR]-[ASV]-x(3)-[DER]-E-[FLV]-[EQ]-[FY]-x(4)-I-x(2)-[NV]-[IP]-x-N-x-S Occurences: 4(4) BET4_YEAST : 99- 146: vnkll EqDarNyhGWhyRrIvvGNieSitNKSldkEEFEYttikInnNIsNyS awhqr PFTA_BOVIN : 190- 236: dqllk E-DvrNnsVWnqRyFviSNttGynDRAileREVQYtlemIklVPhNeS awnyl PFTA_RAT : 229- 275: dqllk E-DvrNnsVWnqRhFviSNttGysDRAvleREVQYtlemIklVPhNeS awnyl RAM2_YEAST : 172- 219: asdli EtDiyNnsAWthRmFywVNakDviSKVelaDELQFimdkIqlVPqNiS pwtyl I 9: 53.6209 4( 4) L-x-E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x(2,4)-V-x-[AGNS]-x-[DET]-[STV]-[GI]-x(3)-[ERS]-[AL]-x(2)-E Occurences: 4(4) BET4_YEAST : 97- 129: avvnk LlEqDArNyhGWhyRriv-VgNiESItnkSLdkE efeyt PFTA_BOVIN : 188- 218: yvdql LkE-DVrNnsVWnqRyf--ViSnTTGyndRAilE revqy PFTA_RAT : 227- 257: yvdql LkE-DVrNnsVWnqRhf--ViSnTTGysdRAvlE revqy RAM2_YEAST : 170- 203: ayasd LiEtDIyNnsAWthRmfywVnAkDVIskvELadE lqfim J 10: 51.8817 4( 4) T-x-E-[ILM]-[IL]-[DEK]-x-[ANV]-P-x(3)-[AST]-[AI]-W-N-Y-x(2)-[DGN]-I-[ILV] Occurences: 4(4) BET4_YEAST : 15- 36: ealkk TsELLEkNPefnAIWNYrrDII aslas PFTA_BOVIN : 224- 245: revqy TlEMIKlVPhneSAWNYlkGIL qdrgl PFTA_RAT : 263- 284: revqy TlEMIKlVPhneSAWNYlkGIL qdrgl RAM2_YEAST : 55- 76: ralql TaEIIDvAPafyTIWNYrfNIV rhmms K 11: 49.4508 4( 4) E-x(0,1)-D-[AIV]-x-N-x(2)-[AGV]-W-x(2)-R-x(2,4)-V-x-[AGNS]-x-[DET]-[STV]-[GI]-x(3)-[ERS]-[AL]-x(2)-E Occurences: 4(4) BET4_YEAST : 99- 129: vnkll EqDArNyhGWhyRriv-VgNiESItnkSLdkE efeyt PFTA_BOVIN : 190- 218: dqllk E-DVrNnsVWnqRyf--ViSnTTGyndRAilE revqy PFTA_RAT : 229- 257: dqllk E-DVrNnsVWnqRhf--ViSnTTGysdRAvlE revqy RAM2_YEAST : 172- 203: asdli EtDIyNnsAWthRmfywVnAkDVIskvELadE lqfim L 12: 46.1652 4( 4) D-x(2,3)-E-x(2,3)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R Occurences: 4(4) BET4_YEAST : 127- 151: tnksl Dke-Efe-YttikINNNIsNySAWhqR vqiis PFTA_BOVIN : 108- 133: kslqk DlheEmn-YisaiIEEQPkNyQVWhhR rvlve PFTA_BOVIN : 108- 133: kslqk Dlh-EemnYisaiIEEQPkNyQVWhhR rvlve PFTA_RAT : 147- 172: rslqk DlqeEmn-YiiaiIEEQPkNyQVWhhR rvlve PFTA_RAT : 147- 172: rslqk Dlq-EemnYiiaiIEEQPkNyQVWhhR rvlve RAM2_YEAST : 159- 184: clffs DfqhEla-YasdlIETDIyNnSAWthR mfywv M 13: 46.1652 4( 4) D-x(2,3)-E-x(1,2)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R Occurences: 4(4) BET4_YEAST : 127- 151: tnksl Dke-EfeYttikINNNIsNySAWhqR vqiis PFTA_BOVIN : 108- 133: kslqk DlheEmnYisaiIEEQPkNyQVWhhR rvlve PFTA_RAT : 147- 172: rslqk DlqeEmnYiiaiIEEQPkNyQVWhhR rvlve RAM2_YEAST : 159- 184: clffs DfqhElaYasdlIETDIyNnSAWthR mfywv N 14: 45.6652 4( 4) D-x(1,3)-E-x(2,3)-Y-x(4)-I-[EN]-[ENT]-[DNQ]-[IP]-x-N-x-[QS]-[AV]-W-x(2)-R Occurences: 4(4) BET4_YEAST : 127- 151: tnksl Dke-Efe-YttikINNNIsNySAWhqR vqiis BET4_YEAST : 127- 151: tnksl Dk--EefeYttikINNNIsNySAWhqR vqiis PFTA_BOVIN : 108- 133: kslqk DlheEmn-YisaiIEEQPkNyQVWhhR rvlve PFTA_BOVIN : 108- 133: kslqk Dlh-EemnYisaiIEEQPkNyQVWhhR rvlve PFTA_RAT : 147- 172: rslqk DlqeEmn-YiiaiIEEQPkNyQVWhhR rvlve PFTA_RAT : 147- 172: rslqk Dlq-EemnYiiaiIEEQPkNyQVWhhR rvlve RAM2_YEAST : 159- 184: clffs DfqhEla-YasdlIETDIyNnSAWthR mfywv O 15: 43.7941 4( 4) P-K-[NV]-Y-x(0,2)-W-x-[HWY]-[NR]-x(2)-L-x(2,3)-L-[HKR]-x(2)-[PS]-[QST]-x(4)-[ILV] Occurences: 4(4) BET4_YEAST : 63- 86: llkdy PKVY--WiWNhrLwv-LKhyPTsspkV wqtel PFTA_BOVIN : 124- 150: iieeq PKNYqvWhHRrvLvewLRdpSQelefI adilt PFTA_RAT : 163- 189: iieeq PKNYqvWhHRrvLvewLKdpSQelefI adiln RAM2_YEAST : 105- 130: vtlnn PKNYqiWsYRqsLlk-LHpsPSfkreL pilkl P 16: 40.3605 4( 4) D-x(2,4)-E-x(2,4)-Y-[AT]-x(3)-I-x(2)-[DNV]-[IP]-x-N-x-S-A-W Occurences: 4(4) BET4_YEAST : 127- 148: tnksl Dke--Efe--YTtikInnNIsNySAW hqrvq PFTA_BOVIN : 213- 238: ttgyn DrailErevqYTlemIklVPhNeSAW nylkg PFTA_RAT : 252- 277: ttgys DravlErevqYTlemIklVPhNeSAW nylkg RAM2_YEAST : 159- 181: clffs Dfqh-Ela--YAsdlIetDIyNnSAW thrmf Q 17: 37.2674 4( 4) K-x(3,5)-E-x-[NQT]-x-I-x(1,3)-I-[ENQ]-x(2)-[IP]-x-N-x-[QS]-[APV]-W Occurences: 4(4) BET4_YEAST : 128- 148: nksld Keef--EyTtIk--INnnIsNySAW hqrvq PFTA_BOVIN : 107- 130: lkslq Kdlhe-EmNyIsaiIEeqPkNyQVW hhrrv PFTA_RAT : 146- 169: lrslq Kdlqe-EmNyIiaiIEeqPkNyQVW hhrrv RAM2_YEAST : 197- 221: kdvis KveladElQfImdkIQlvPqNiSPW tylrg R 18: 34.5952 4( 4) Y-x(3)-[AIL]-I-[DEK]-x-[DQ]-P-x(0,2)-K-N-x(3,4)-H-x(2)-[ENR] Occurences: 4(4) BET4_YEAST : 267- 287: rsseq YlvqLIDaDPlrKNryl-HllE qhk PFTA_BOVIN : 115- 134: heemn YisaIIEeQP--KNyqvwHhrR vlvew PFTA_RAT : 154- 173: qeemn YiiaIIEeQP--KNyqvwHhrR vlvew RAM2_YEAST : 293- 313: navka YsllAIKyDPirKNlwh-HkiN nln S 19: 34.0204 4( 4) Y-[AT]-x(3)-I-x(2)-[DNV]-[IP]-x-N-x-S-A-W Occurences: 4(4) BET4_YEAST : 133- 148: keefe YTtikInnNIsNySAW hqrvq PFTA_BOVIN : 223- 238: erevq YTlemIklVPhNeSAW nylkg PFTA_RAT : 262- 277: erevq YTlemIklVPhNeSAW nylkg RAM2_YEAST : 166- 181: qhela YAsdlIetDIyNnSAW thrmf T 20: 28.3085 4( 4) Y-x(2,4)-W-[NQT]-H-R-x(1,3)-W-V-x(2)-[EHK] Occurences: 4(4) BET4_YEAST : 66- 78: dypkv Ywi--WNHRl--WVlkH yptss PFTA_BOVIN : 161- 173: qdakn Yha--WQHRq--WViqE fklwd PFTA_RAT : 200- 212: qdakn Yha--WQHRq--WViqE frlwd RAM2_YEAST : 176- 192: ietdi YnnsaWTHRmfyWVnaK dvisk Number of patterns evaluated by Pratt:11708 Total running time: 4 seconds