------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file PPIC_PPIASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PPIC_PPIASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYPC_ECOLI 92 ESS1_YEAST 190 NIFM_AZOCH 293 NIFM_AZOVI 292 NIFM_KLEPN 266 PRSA_BACSU 292 PRTM_LACLA 299 PRTM_LACLC 299 PRTM_LACPA 299 SURA_ECOLI 430 SURA_HAEIN 313 YA04_HAEIN 594 YACD_BACSU 297 YP13_DICDI 91 Pratt run started at Thu Feb 6 20:50:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 33( 14) A-x(0,2)-A-x(2,3)-L 2: 8.3401 45( 14) L-A 3: 8.3401 49( 14) L-x(3)-L 4: 8.3401 24( 14) A-x-D 5: 8.3401 40( 14) E-x(2)-A 6: 8.3401 53( 14) A-x(3)-L 7: 8.3401 36( 14) A-x-A 8: 8.3401 25( 14) G-D 9: 7.8401 41( 14) E-x(0,1)-Q 10: 7.8401 61( 14) L-x(1,2)-E 11: 7.8401 55( 14) Q-x(4,5)-A 12: 7.8401 48( 14) R-x(3,4)-L 13: 7.8401 79( 14) L-x(3,4)-L 14: 7.8401 63( 14) E-x(1,2)-L 15: 7.8401 60( 14) E-x(0,1)-L 16: 7.8401 48( 14) E-x(3,4)-Q 17: 7.8401 42( 14) E-x(2,3)-L 18: 7.8401 54( 14) V-x(3,4)-L 19: 7.8401 44( 14) D-x(3,4)-Q 20: 7.8401 35( 14) V-x(0,1)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.6657 28( 14) A-x(0,2)-A-x(2,3)-L-x(3)-[ADEGQS] B 2: 10.2554 22( 14) E-x(2)-A-x-[DEGQS] C 3: 10.2527 32( 14) A-x(3)-L-x(3)-[ADEQS] D 4: 10.1057 23( 14) D-x(3,4)-Q-x(3)-[DGNQ] E 5: 10.0210 22( 14) Q-x(4,5)-A-x(3)-[AGLV] F 6: 9.9789 33( 14) L-x(3)-L-x-[ADEQST] G 7: 9.7888 26( 14) E-x(3,4)-Q-x(3)-[ADGNQ] H 8: 9.4893 24( 14) E-x(0,1)-Q-[AGILPV] I 9: 9.2609 49( 14) L-x(3,4)-L-[ADENQST] J 10: 9.0786 38( 14) E-x(0,1)-L-x(2)-[ADEGNQST] K 11: 8.3401 45( 14) L-A L 12: 8.3401 24( 14) A-x-D M 13: 8.3401 36( 14) A-x-A N 14: 8.3401 25( 14) G-D O 15: 7.8401 61( 14) L-x(1,2)-E P 16: 7.8401 48( 14) R-x(3,4)-L Q 17: 7.8401 63( 14) E-x(1,2)-L R 18: 7.8401 42( 14) E-x(2,3)-L S 19: 7.8401 54( 14) V-x(3,4)-L T 20: 7.8401 35( 14) V-x(0,1)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.6657 28( 14) A-x(0,2)-A-x(2,3)-L-x(3)-[ADEGQS] Occurences: 28(14) CYPC_ECOLI : 4- 14: akt Aa-AlhiLvkeE klald CYPC_ECOLI : 5- 14: akta A--AlhiLvkeE klald ESS1_YEAST : 164- 172: psfed A--Afq-LkvgE vsdiv NIFM_AZOCH : 88- 98: ealqq AldAqg-LervG mraml NIFM_AZOCH : 101- 111: rvgmr AmlAre-LkvqA vldci NIFM_AZOVI : 88- 98: ealqq AldAqa-LdaaG mraml NIFM_AZOVI : 101- 111: aagmr AmlAre-LrveA vldcv NIFM_KLEPN : 65- 75: lenia AslAiw-LdegD fappe NIFM_KLEPN : 200- 210: alfsl AenAls-LpiaS elgwh PRSA_BACSU : 8- 19: kiaia AitAtsiLalsA cssgd PRSA_BACSU : 198- 206: etfsk A--Afk-LktgE vsdpv PRTM_LACLA : 12- 22: lkvll AstAta-LlllS gcqsn PRTM_LACLA : 12- 23: lkvll AstAtalLllsG cqsnq PRTM_LACLA : 15- 25: llast At-AlllLsgcQ snqtd PRTM_LACLA : 209- 217: atfkd A--Ayk-LkngD ytqtp PRTM_LACLC : 12- 22: lkvll AstAta-LlllS gcqsn PRTM_LACLC : 12- 23: lkvll AstAtalLllsG cqsnq PRTM_LACLC : 15- 25: llast At-AlllLsgcQ snqtd PRTM_LACLC : 209- 217: atfkd A--Ayk-LkngD ytqtp PRTM_LACPA : 12- 22: lkvll AstAta-LlllS gcqsn PRTM_LACPA : 12- 23: lkvll AstAtalLllsG cqsnq PRTM_LACPA : 15- 25: llast At-AlllLsgcQ snqad PRTM_LACPA : 209- 217: atfkd A--Ayk-LkngD ytqtp SURA_ECOLI : 53- 64: svkln AaqArqqLpddA tlrhq SURA_ECOLI : 54- 64: vklna Aq-ArqqLpddA tlrhq SURA_HAEIN : 92- 101: ivedt A--ArngLtygQ fldal YA04_HAEIN : 254- 265: aneqd AkvAyeeLqkgA nfadv YA04_HAEIN : 271- 280: nfadv Ak-Aks-LdkiS gengg YA04_HAEIN : 302- 310: kafed A--Aaa-LqvgQ ysqpi YACD_BACSU : 20- 29: lvcci Av-Ayt-LtksQ agass YP13_DICDI : 23- 33: yvqpf Ae-AvtkLkkgQ lvdkp B 2: 10.2554 22( 14) E-x(2)-A-x-[DEGQS] Occurences: 22(14) CYPC_ECOLI : 14- 19: ilvke EklAlD lleqi ESS1_YEAST : 131- 136: ktnsf EalAkE rsdcs ESS1_YEAST : 162- 167: mqpsf EdaAfQ lkvge NIFM_AZOCH : 182- 187: lrgkp ErfAeQ aakhs NIFM_AZOCH : 288- 293: qnatl EnlAhG NIFM_AZOVI : 4- 9: mas ErlAdG dsryy NIFM_AZOVI : 181- 186: lrgkp ErfAeQ amkhs NIFM_AZOVI : 287- 292: qnatl EnlAhG NIFM_KLEPN : 61- 66: paall EniAaS laiwl PRSA_BACSU : 164- 169: kgekf EdlAkE ystds PRTM_LACLA : 157- 162: iltsd EdtAkQ visdl PRTM_LACLC : 157- 162: iltsd EdtAkQ visdl PRTM_LACPA : 157- 162: iltsd EdtAkQ visdl SURA_ECOLI : 158- 163: lpqev EslAqQ vgnqn SURA_ECOLI : 310- 315: arvkl EqiAaD iksgk SURA_HAEIN : 144- 149: dvtre EvvAlG qkmld SURA_HAEIN : 232- 237: gyafp EtyApQ faqtv YA04_HAEIN : 328- 333: ivlvq ErkAqS lenvk YA04_HAEIN : 358- 363: ryfsl EkqAsD kafed YACD_BACSU : 167- 172: ivvkd EeeArE vlkel YACD_BACSU : 184- 189: ggssf EavAaE rstdr YP13_DICDI : 57- 62: dtrpv EfpAmD qvrpq C 3: 10.2527 32( 14) A-x(3)-L-x(3)-[ADEQS] Occurences: 32(14) CYPC_ECOLI : 6- 14: aktaa AlhiLvkeE klald ESS1_YEAST : 164- 172: psfed AafqLkvgE vsdiv NIFM_AZOCH : 26- 34: eqfgc ApgeLseeQ lqqae NIFM_AZOVI : 2- 10: m AserLadgD sryyl NIFM_AZOVI : 26- 34: eqfgc ApgeLsedQ lqqad NIFM_KLEPN : 89- 97: ivrhh ArleLafaD iarqa NIFM_KLEPN : 195- 203: pqlet AlfsLaenA lslpi NIFM_KLEPN : 237- 245: qales ArdyLwqqS qqrhq PRSA_BACSU : 11- 19: iaait AtsiLalsA cssgd PRSA_BACSU : 198- 206: etfsk AafkLktgE vsdpv PRTM_LACLA : 17- 25: astat AlllLsgcQ snqtd PRTM_LACLA : 124- 132: flsev AlkkLkkvS esqlk PRTM_LACLA : 209- 217: atfkd AaykLkngD ytqtp PRTM_LACLC : 17- 25: astat AlllLsgcQ snqtd PRTM_LACLC : 124- 132: flsev AlkkLkkvS esqlk PRTM_LACLC : 209- 217: atfkd AaykLkngD ytqtp PRTM_LACPA : 17- 25: astat AlllLsgcQ snqad PRTM_LACPA : 124- 132: flsev AlkkLkkvS esqlk PRTM_LACPA : 209- 217: atfkd AaykLkngD ytqtp SURA_ECOLI : 56- 64: lnaaq ArqqLpddA tlrhq SURA_ECOLI : 289- 297: vtevh ArhiLlkpS pimtd SURA_ECOLI : 305- 313: mtdeq ArvkLeqiA adiks SURA_ECOLI : 358- 366: pafrd AltrLnkgQ msapv SURA_HAEIN : 93- 101: vedta ArngLtygQ fldal SURA_HAEIN : 282- 290: aytqk AyerLvntQ lqdat YA04_HAEIN : 131- 139: asilr AslpLeqiQ ngvan YA04_HAEIN : 257- 265: qdakv AyeeLqkgA nfadv YA04_HAEIN : 302- 310: kafed AaaaLqvgQ ysqpi YA04_HAEIN : 461- 469: lkrqk AenaLngkA qqavk YA04_HAEIN : 554- 562: elsqf AmqlLrshQ selqv YACD_BACSU : 268- 276: irrqi AmdqLgdkA tvktl YP13_DICDI : 25- 33: qpfae AvtkLkkgQ lvdkp D 4: 10.1057 23( 14) D-x(3,4)-Q-x(3)-[DGNQ] Occurences: 23(14) CYPC_ECOLI : 19- 27: eklal Dlle-QiknG adfgk ESS1_YEAST : 163- 171: qpsfe Daaf-QlkvG evsdi NIFM_AZOCH : 216- 225: lypel DaclfQmaqG qlspv NIFM_AZOVI : 215- 224: lypel DaclfQmarG elspv NIFM_KLEPN : 239- 247: lesar Dylw-QqsqQ rhqrq PRSA_BACSU : 247- 256: eqkln DnaavQeavQ kvmkk PRTM_LACLA : 87- 96: vnday DsykqQygeN fdafl PRTM_LACLA : 158- 166: ltsde Dtak-QvisD laagk PRTM_LACLC : 87- 96: vnday DsykqQygeN fdafl PRTM_LACLC : 158- 166: ltsde Dtak-QvisD laagk PRTM_LACPA : 87- 96: vnday DsykqQygeN fdafl PRTM_LACPA : 158- 166: ltsde Dtak-QvisD laagk SURA_ECOLI : 93- 102: gvkis DeqldQaiaN iakqn SURA_HAEIN : 64- 73: idkii DdilvQkavQ esgvk SURA_HAEIN : 65- 73: dkiid Dilv-QkavQ esgvk SURA_HAEIN : 154- 163: gqkml DeaksQgtaQ kvtgk YA04_HAEIN : 107- 116: vkgkf DnavyQrilQ qnhlt YA04_HAEIN : 175- 184: tlsla DemakQsvsD deikt YA04_HAEIN : 224- 233: nlqvt DveiaQyyqD nkaqf YA04_HAEIN : 233- 241: aqyyq Dnka-QfmtQ hlahi YACD_BACSU : 257- 266: rtfsf DevkdQirrQ iamdq YACD_BACSU : 261- 270: fdevk DqirrQiamD qlgdk YP13_DICDI : 36- 44: kgqlv Dkpv-QtqfG whviq E 5: 10.0210 22( 14) Q-x(4,5)-A-x(3)-[AGLV] Occurences: 22(14) CYPC_ECOLI : 54- 64: lgefr QgqmvpAfdkV vfscp ESS1_YEAST : 158- 168: grgem QpsfedAafqL kvgev NIFM_AZOCH : 138- 147: fnhae Qfkvp-ArhkA rhilv NIFM_AZOVI : 87- 97: pealq QaldaqAldaA gmram NIFM_AZOVI : 92- 101: qalda Qalda-AgmrA mlare NIFM_AZOVI : 138- 147: fnhae Qfkvp-AqhkA hilvt NIFM_KLEPN : 231- 241: apmep QqalesArdyL wqqsq NIFM_KLEPN : 232- 241: pmepq Qales-ArdyL wqqsq PRSA_BACSU : 256- 266: vqeav QkvmkkAdieV kdkdl PRTM_LACLA : 28- 38: gcqsn QtdqtvAtysG gkvte PRTM_LACLC : 28- 38: gcqsn QtdqtvAtysG gkvte PRTM_LACPA : 28- 38: gcqsn QadqkvAtysG gkvte SURA_ECOLI : 113- 123: nmtld QmrtrlAydgL nynty SURA_ECOLI : 155- 165: itilp QeveslAqqvG nqnda SURA_ECOLI : 332- 341: akefs Qdpgs-AnqgG dlgwa SURA_HAEIN : 150- 160: vvalg QkmldeAksqG taqkv YA04_HAEIN : 10- 20: aifla QmipmpAkvnG evisq YA04_HAEIN : 34- 44: lnryn QefeirAqreG eafva YA04_HAEIN : 252- 261: qfane Qdakv-AyeeL qkgan YA04_HAEIN : 571- 581: qvqli QglrerAkieV ndsfi YACD_BACSU : 262- 272: devkd QirrqiAmdqL gdkat YP13_DICDI : 20- 29: atnyv Qpfae-AvtkL kkgql F 6: 9.9789 33( 14) L-x(3)-L-x-[ADEQST] Occurences: 33(14) CYPC_ECOLI : 16- 22: vkeek LaldLlE qikng ESS1_YEAST : 69- 75: tnkdq LhkhLrD hpvrv ESS1_YEAST : 117- 123: delkt LitrLdD dsktn NIFM_AZOCH : 85- 91: esaea LqqaLdA qgler NIFM_AZOCH : 211- 217: vvpgt LypeLdA clfqm NIFM_AZOCH : 215- 221: tlype LdacLfQ maqgq NIFM_AZOCH : 227- 233: maqgq LspvLeS pigfh NIFM_AZOCH : 277- 283: yqrkw LeslLqQ natle NIFM_AZOVI : 85- 91: espea LqqaLdA qalda NIFM_AZOVI : 210- 216: vvpgt LypeLdA clfqm NIFM_AZOVI : 214- 220: tlype LdacLfQ marge NIFM_AZOVI : 226- 232: marge LspvLeS pigfh NIFM_AZOVI : 276- 282: yqrkw LvclLqQ natle NIFM_KLEPN : 67- 73: niaas LaiwLdE gdfap NIFM_KLEPN : 188- 194: isrgl LypqLeT alfsl NIFM_KLEPN : 192- 198: llypq LetaLfS laena PRSA_BACSU : 241- 247: lksev LeqkLnD naavq PRTM_LACLA : 7- 13: kkkmr LkvlLaS tatal PRTM_LACLA : 285- 291: ikdkd LadaLdS ykkla PRTM_LACLC : 7- 13: kkkmr LkvlLaS tatal PRTM_LACLC : 46- 52: vtess LykeLkQ spttk PRTM_LACLC : 285- 291: ikdkd LadaLdS ykkla PRTM_LACPA : 7- 13: kkkmr LkvlLaS tatal PRTM_LACPA : 285- 291: ikdkd LadaLdS ykkpa SURA_ECOLI : 379- 385: sfgwh LielLdT rnvdk SURA_HAEIN : 8- 14: mkkfv LrsfLlA tlgcv SURA_HAEIN : 179- 185: hillk LnplLnD aqakk YA04_HAEIN : 4- 10: mec LaifLaQ mipmp YA04_HAEIN : 565- 571: shqse LqvqLiQ glrer YA04_HAEIN : 569- 575: elqvq LiqgLrE rakie YACD_BACSU : 124- 130: iryni LledLlT rdidi YACD_BACSU : 245- 251: yaiiq LkekLkA rtfsf YP13_DICDI : 68- 74: qvrpq LeemLrQ qtlan G 7: 9.7888 26( 14) E-x(3,4)-Q-x(3)-[ADGNQ] Occurences: 26(14) CYPC_ECOLI : 51- 60: ggdlg EfrqgQmvpA fdkvv ESS1_YEAST : 162- 171: mqpsf EdaafQlkvG evsdi NIFM_AZOCH : 29- 38: gcapg ElseeQlqqA eriig NIFM_AZOCH : 83- 91: ryesa Ealq-QaldA qgler NIFM_AZOCH : 106- 114: amlar Elkv-QavlD cicag NIFM_AZOVI : 29- 38: gcapg ElsedQlqqA driig NIFM_AZOVI : 83- 91: ryesp Ealq-QaldA qalda NIFM_KLEPN : 141- 149: vdndr Eavh-QrilG lyrqi PRSA_BACSU : 80- 88: dnklk Eykt-QlgdQ ytale PRSA_BACSU : 239- 247: kelks Evle-QklnD naavq PRTM_LACLA : 157- 166: iltsd EdtakQvisD laagk PRTM_LACLC : 157- 166: iltsd EdtakQvisD laagk PRTM_LACPA : 157- 166: iltsd EdtakQvisD laagk SURA_ECOLI : 94- 102: vkisd Eqld-QaiaN iakqn SURA_ECOLI : 158- 166: lpqev Esla-QqvgN qndas SURA_ECOLI : 158- 167: lpqev EslaqQvgnQ ndast SURA_HAEIN : 155- 163: qkmld Eaks-QgtaQ kvtgk YA04_HAEIN : 21- 30: akvng EvisqQdflN rynqe YA04_HAEIN : 158- 166: vknsa Evff-QkrlA rlatl YA04_HAEIN : 176- 184: lslad Emak-QsvsD deikt YA04_HAEIN : 328- 336: ivlvq Erka-QsleN vkaqi YA04_HAEIN : 547- 556: qgsls EkelsQfamQ llrsh YA04_HAEIN : 564- 572: rshqs Elqv-QliqG lrera YACD_BACSU : 114- 122: httek Ewkd-QiryN illed YACD_BACSU : 258- 266: tfsfd Evkd-QirrQ iamdq YP13_DICDI : 69- 78: vrpql EemlrQqtlA nyqkq YP13_DICDI : 70- 78: rpqle Emlr-QqtlA nyqkq YP13_DICDI : 70- 79: rpqle EmlrqQtlaN yqkql H 8: 9.4893 24( 14) E-x(0,1)-Q-[AGILPV] Occurences: 24(14) CYPC_ECOLI : 22- 24: aldll E-QI kngad ESS1_YEAST : 156- 159: wfgrg EmQP sfeda NIFM_AZOCH : 32- 35: pgels EeQL qqaer NIFM_AZOCH : 33- 35: gelse E-QL qqaer NIFM_AZOCH : 186- 188: perfa E-QA akhse NIFM_AZOVI : 32- 35: pgels EdQL qqadr NIFM_AZOVI : 185- 187: perfa E-QA mkhse NIFM_KLEPN : 33- 35: dtpaf E-QA wqrqc PRSA_BACSU : 103- 105: kdylk E-QV kyell PRTM_LACLA : 133- 136: lkkvs EsQL kaawk PRTM_LACLC : 133- 136: lkkvs EsQL kaawk PRTM_LACPA : 133- 136: lkkvs EsQL kavwk SURA_ECOLI : 94- 96: vkisd E-QL dqaia SURA_ECOLI : 196- 199: qvnea EsQA raivd SURA_ECOLI : 303- 305: pimtd E-QA rvkle SURA_ECOLI : 310- 312: arvkl E-QI aadik SURA_HAEIN : 42- 45: gipvl EsQV ranmg YA04_HAEIN : 136- 138: aslpl E-QI qngva YA04_HAEIN : 202- 204: sfvqp E-QV kvqyi YA04_HAEIN : 358- 361: ryfsl EkQA sdkaf YA04_HAEIN : 541- 543: alnkv E-QG slsek YA04_HAEIN : 564- 567: rshqs ElQV qliqg YACD_BACSU : 75- 77: nvrvv E-QL akknk YP13_DICDI : 86- 88: qkqlr E-QA kiq I 9: 9.2609 49( 14) L-x(3,4)-L-[ADENQST] Occurences: 49(14) CYPC_ECOLI : 16- 22: vkeek LaldlLE qikng ESS1_YEAST : 117- 122: delkt Litr-LD ddskt NIFM_AZOCH : 30- 36: capge LseeqLQ qaeri NIFM_AZOCH : 85- 90: esaea Lqqa-LD aqgle NIFM_AZOCH : 89- 95: alqqa LdaqgLE rvgmr NIFM_AZOCH : 211- 216: vvpgt Lype-LD aclfq NIFM_AZOCH : 227- 232: maqgq Lspv-LE spigf NIFM_AZOCH : 260- 265: eilpr Lrdr-LQ lrqrk NIFM_AZOCH : 277- 282: yqrkw Lesl-LQ qnatl NIFM_AZOVI : 30- 36: capge LsedqLQ qadri NIFM_AZOVI : 85- 90: espea Lqqa-LD aqald NIFM_AZOVI : 89- 95: alqqa LdaqaLD aagmr NIFM_AZOVI : 210- 215: vvpgt Lype-LD aclfq NIFM_AZOVI : 226- 231: marge Lspv-LE spigf NIFM_AZOVI : 259- 264: eilpr Lrdr-LQ lrqrk NIFM_AZOVI : 276- 281: yqrkw Lvcl-LQ qnatl NIFM_KLEPN : 67- 72: niaas Laiw-LD egdfa NIFM_KLEPN : 187- 193: wisrg LlypqLE talfs NIFM_KLEPN : 188- 193: isrgl Lypq-LE talfs NIFM_KLEPN : 199- 205: talfs LaenaLS lpias PRSA_BACSU : 236- 242: dmkke LksevLE qklnd PRSA_BACSU : 241- 246: lksev Leqk-LN dnaav PRTM_LACLA : 7- 12: kkkmr Lkvl-LA stata PRTM_LACLA : 64- 70: mlanm LiyraLN haygk PRTM_LACLA : 115- 121: sfkes LrtnfLS evalk PRTM_LACLA : 197- 203: kisfe LnnktLD atfkd PRTM_LACLA : 285- 290: ikdkd Lada-LD sykkl PRTM_LACLC : 7- 12: kkkmr Lkvl-LA stata PRTM_LACLC : 64- 70: mlanm LiyraLN haygk PRTM_LACLC : 115- 121: sfkes LrtnfLS evalk PRTM_LACLC : 197- 203: kisfe LnnktLD atfkd PRTM_LACLC : 285- 290: ikdkd Lada-LD sykkl PRTM_LACPA : 7- 12: kkkmr Lkvl-LA stata PRTM_LACPA : 64- 70: mlanm LiyraLN haygk PRTM_LACPA : 115- 121: sfkes LrtnfLS evalk PRTM_LACPA : 285- 290: ikdkd Lada-LD sykkp SURA_ECOLI : 118- 124: qmrtr LaydgLN yntyr SURA_ECOLI : 379- 384: sfgwh Liel-LD trnvd SURA_HAEIN : 8- 14: mkkfv LrsflLA tlgcv SURA_HAEIN : 148- 154: eevva LgqkmLD eaksq SURA_HAEIN : 179- 184: hillk Lnpl-LN daqak SURA_HAEIN : 286- 292: kayer LvntqLQ datnd YA04_HAEIN : 4- 9: mec Laif-LA qmipm YA04_HAEIN : 115- 121: vyqri LqqnhLT sdgya YA04_HAEIN : 168- 174: krlar LatlsLA demak YA04_HAEIN : 545- 551: veqgs LsekeLS qfamq YACD_BACSU : 124- 130: iryni LledlLT rdidi YACD_BACSU : 125- 130: rynil Ledl-LT rdidi YP13_DICDI : 72- 78: qleem LrqqtLA nyqkq J 10: 9.0786 38( 14) E-x(0,1)-L-x(2)-[ADEGNQST] Occurences: 38(14) CYPC_ECOLI : 14- 19: ilvke EkLalD lleqi ESS1_YEAST : 131- 136: ktnsf EaLakE rsdcs NIFM_AZOCH : 29- 33: gcapg E-LseE qlqqa NIFM_AZOCH : 33- 38: gelse EqLqqA eriig NIFM_AZOCH : 83- 88: ryesa EaLqqA ldaqg NIFM_AZOCH : 106- 110: amlar E-LkvQ avldc NIFM_AZOCH : 278- 283: qrkwl EsLlqQ natle NIFM_AZOCH : 288- 293: qnatl EnLahG NIFM_AZOVI : 4- 9: mas ErLadG dsryy NIFM_AZOVI : 29- 33: gcapg E-LseD qlqqa NIFM_AZOVI : 83- 88: ryesp EaLqqA ldaqa NIFM_AZOVI : 106- 110: amlar E-LrvE avldc NIFM_AZOVI : 287- 292: qnatl EnLahG NIFM_KLEPN : 92- 96: hharl E-LafA diarq PRSA_BACSU : 40- 44: dvtkg E-LytN mkkta PRSA_BACSU : 108- 112: eqvky E-LltQ kaakd PRSA_BACSU : 164- 169: kgekf EdLakE ystds PRSA_BACSU : 235- 239: ddmkk E-LksE vleqk PRTM_LACLA : 49- 53: ssfyk E-LkqS pttkt PRTM_LACLA : 113- 118: rssfk EsLrtN flsev PRTM_LACLC : 49- 53: sslyk E-LkqS pttkt PRTM_LACLC : 113- 118: rssfk EsLrtN flsev PRTM_LACPA : 49- 53: snfyk E-LkqS pttkt PRTM_LACPA : 113- 118: rssfk EsLrtN flsev SURA_ECOLI : 72- 77: rhqim ErLimD qiilq SURA_ECOLI : 94- 99: vkisd EqLdqA iania SURA_ECOLI : 158- 163: lpqev EsLaqQ vgnqn SURA_ECOLI : 173- 177: ndast E-LnlS hilip SURA_ECOLI : 381- 385: gwhli E-LldT rnvdk SURA_HAEIN : 284- 289: tqkay ErLvnT qlqda YA04_HAEIN : 72- 76: lmidq E-LlrQ yvkel YA04_HAEIN : 80- 84: rqyvk E-LklG vsdem YA04_HAEIN : 259- 264: akvay EeLqkG anfad YA04_HAEIN : 260- 264: kvaye E-LqkG anfad YA04_HAEIN : 294- 298: wvnen E-LpkA fedaa YA04_HAEIN : 564- 568: rshqs E-LqvQ liqgl YACD_BACSU : 176- 180: revlk E-LkgG ssfea YP13_DICDI : 70- 75: rpqle EmLrqQ tlany K 11: 8.3401 45( 14) L-A Occurences: 45(14) CYPC_ECOLI : 16- 17: vkeek LA ldlle CYPC_ECOLI : 33- 34: adfgk LA kkhsi ESS1_YEAST : 133- 134: nsfea LA kersd NIFM_AZOCH : 103- 104: gmram LA relkv NIFM_AZOCH : 290- 291: atlen LA hg NIFM_AZOVI : 6- 7: maser LA dgdsr NIFM_AZOVI : 103- 104: gmram LA relrv NIFM_AZOVI : 289- 290: atlen LA hg NIFM_KLEPN : 12- 13: farqr LA rsrwn NIFM_KLEPN : 67- 68: niaas LA iwlde NIFM_KLEPN : 93- 94: harle LA fadia NIFM_KLEPN : 164- 165: dafap LA qrhsh NIFM_KLEPN : 199- 200: talfs LA enals PRSA_BACSU : 15- 16: tatsi LA lsacs PRSA_BACSU : 166- 167: ekfed LA keyst PRTM_LACLA : 11- 12: rlkvl LA stata PRTM_LACLA : 60- 61: ttktm LA nmliy PRTM_LACLA : 167- 168: qvisd LA agkdf PRTM_LACLA : 176- 177: kdfam LA ktdsi PRTM_LACLA : 285- 286: ikdkd LA dalds PRTM_LACLA : 295- 296: dsykk LA ttn PRTM_LACLC : 11- 12: rlkvl LA stata PRTM_LACLC : 60- 61: ttktm LA nmliy PRTM_LACLC : 167- 168: qvisd LA agkdf PRTM_LACLC : 176- 177: kdfam LA ktdsi PRTM_LACLC : 285- 286: ikdkd LA dalds PRTM_LACLC : 295- 296: dsykk LA ttn PRTM_LACPA : 11- 12: rlkvl LA stata PRTM_LACPA : 60- 61: ttktm LA nmliy PRTM_LACPA : 167- 168: qvisd LA agkdf PRTM_LACPA : 176- 177: kdfat LA ktdsi PRTM_LACPA : 285- 286: ikdkd LA dalds SURA_ECOLI : 118- 119: qmrtr LA ydgln SURA_ECOLI : 160- 161: qeves LA qqvgn SURA_ECOLI : 217- 218: fgfgk LA iahsa SURA_HAEIN : 13- 14: lrsfl LA tlgcv SURA_HAEIN : 192- 193: qakkq LA kirsd YA04_HAEIN : 4- 5: mec LA iflaq YA04_HAEIN : 8- 9: claif LA qmipm YA04_HAEIN : 165- 166: ffqkr LA rlatl YA04_HAEIN : 168- 169: krlar LA tlsla YA04_HAEIN : 173- 174: latls LA demak YA04_HAEIN : 243- 244: fmtqh LA hiqfa YACD_BACSU : 77- 78: rvveq LA kknkl YP13_DICDI : 77- 78: lrqqt LA nyqkq L 12: 8.3401 24( 14) A-x-D Occurences: 24(14) CYPC_ECOLI : 17- 19: keekl AlD lleqi CYPC_ECOLI : 60- 62: gqmvp AfD kvvfs ESS1_YEAST : 110- 112: iskqd AtD elktl NIFM_AZOCH : 88- 90: ealqq AlD aqgle NIFM_AZOVI : 88- 90: ealqq AlD aqald NIFM_AZOVI : 93- 95: aldaq AlD aagmr NIFM_KLEPN : 23- 25: nrdpa AlD padtp NIFM_KLEPN : 237- 239: qales ArD ylwqq PRSA_BACSU : 33- 35: iaktd AgD vtkge PRSA_BACSU : 115- 117: ltqka AkD nikvt PRTM_LACLA : 85- 87: ktvnd AyD sykqq PRTM_LACLA : 288- 290: kdlad AlD sykkl PRTM_LACLC : 85- 87: ktvnd AyD sykqq PRTM_LACLC : 288- 290: kdlad AlD sykkl PRTM_LACPA : 85- 87: ktvnd AyD sykqq PRTM_LACPA : 288- 290: kdlad AlD sykkp SURA_ECOLI : 119- 121: mrtrl AyD glnyn SURA_ECOLI : 313- 315: kleqi AaD iksgk SURA_HAEIN : 58- 60: gdrqs AiD kiidd SURA_HAEIN : 105- 107: gqfld AlD yqgis YA04_HAEIN : 361- 363: slekq AsD kafed YACD_BACSU : 209- 211: gfvte AsD nipsa YACD_BACSU : 268- 270: irrqi AmD qlgdk YP13_DICDI : 60- 62: pvefp AmD qvrpq M 13: 8.3401 36( 14) A-x-A Occurences: 36(14) CYPC_ECOLI : 4- 6: akt AaA lhilv ESS1_YEAST : 132- 134: tnsfe AlA kersd NIFM_AZOCH : 82- 84: nryes AeA lqqal NIFM_AZOVI : 71- 73: sqlee AwA hiasr NIFM_AZOVI : 91- 93: qqald AqA ldaag NIFM_KLEPN : 94- 96: arlel AfA diarq NIFM_KLEPN : 160- 162: nasrd AfA plaqr PRSA_BACSU : 5- 7: mkki AiA aitat PRSA_BACSU : 49- 51: nmkkt AgA svltq PRTM_LACLA : 15- 17: llast AtA lllls PRTM_LACLA : 286- 288: kdkdl AdA ldsyk PRTM_LACLC : 15- 17: llast AtA lllls PRTM_LACLC : 286- 288: kdkdl AdA ldsyk PRTM_LACPA : 15- 17: llast AtA lllls PRTM_LACPA : 286- 288: kdkdl AdA ldsyk SURA_ECOLI : 54- 56: vklna AqA rqqlp SURA_ECOLI : 99- 101: eqldq AiA niakq SURA_ECOLI : 199- 201: eaesq ArA ivdqa SURA_ECOLI : 218- 220: gfgkl AiA hsadq SURA_ECOLI : 246- 248: lpgif AqA lstak SURA_ECOLI : 324- 326: gkttf AaA akefs SURA_ECOLI : 325- 327: kttfa AaA kefsq SURA_ECOLI : 421- 423: mqeqr AsA yvkil SURA_HAEIN : 25- 27: aftsm AqA eervv SURA_HAEIN : 186- 188: pllnd AqA kkqla SURA_HAEIN : 207- 209: gkttf AdA alkys SURA_HAEIN : 275- 277: dgdlt AeA ytqka YA04_HAEIN : 271- 273: nfadv AkA ksldk YA04_HAEIN : 302- 304: kafed AaA alqvg YA04_HAEIN : 303- 305: afeda AaA lqvgq YA04_HAEIN : 376- 378: slnta AqA agvkv YACD_BACSU : 20- 22: lvcci AvA ytltk YACD_BACSU : 30- 32: ltksq AgA sssge YACD_BACSU : 185- 187: gssfe AvA aerst YP13_DICDI : 13- 15: gdlgw ApA tnyvq YP13_DICDI : 23- 25: yvqpf AeA vtklk N 14: 8.3401 25( 14) G-D Occurences: 25(14) CYPC_ECOLI : 47- 48: sgkrg GD lgefr ESS1_YEAST : 147- 148: sykrg GD lgwfg NIFM_AZOCH : 7- 8: sfehp GD gdsry NIFM_AZOCH : 9- 10: ehpgd GD sryyl NIFM_AZOVI : 9- 10: erlad GD sryyl NIFM_KLEPN : 53- 54: arvpe GD ipaal NIFM_KLEPN : 74- 75: iwlde GD fappe PRSA_BACSU : 23- 24: sacss GD kevia PRSA_BACSU : 34- 35: aktda GD vtkge PRSA_BACSU : 86- 87: yktql GD qytal PRSA_BACSU : 180- 181: saskg GD lgwfa PRTM_LACLA : 216- 217: yklkn GD ytqtp PRTM_LACLC : 216- 217: yklkn GD ytqtp PRTM_LACPA : 216- 217: yklkn GD ytqtp SURA_ECOLI : 255- 256: stakk GD ivgpi SURA_ECOLI : 341- 342: sanqg GD lgwat SURA_HAEIN : 53- 54: nmgkk GD rqsai SURA_HAEIN : 271- 272: tgvrd GD ltaea YA04_HAEIN : 285- 286: sgeng GD lgwvn YA04_HAEIN : 425- 426: epinv GD yhtii YA04_HAEIN : 530- 531: vhnsn GD vvvva YACD_BACSU : 201- 202: tspyg GD lgfvt YACD_BACSU : 273- 274: amdql GD katvk YP13_DICDI : 1- 2: GD prqrg YP13_DICDI : 8- 9: prqrg GD lgwap O 15: 7.8401 61( 14) L-x(1,2)-E Occurences: 61(14) CYPC_ECOLI : 10- 13: aalhi LvkE eklal CYPC_ECOLI : 20- 22: klald Ll-E qikng CYPC_ECOLI : 49- 51: krggd Lg-E frqgq ESS1_YEAST : 133- 136: nsfea LakE rsdcs NIFM_AZOCH : 30- 32: capge Ls-E eqlqq NIFM_AZOCH : 30- 33: capge LseE qlqqa NIFM_AZOCH : 103- 106: gmram LarE lkvqa NIFM_AZOCH : 120- 122: cicag Lp-E isdtd NIFM_AZOCH : 202- 205: amqgg LlgE vvpgt NIFM_AZOCH : 203- 205: mqggl Lg-E vvpgt NIFM_AZOCH : 211- 214: vvpgt LypE ldacl NIFM_AZOCH : 240- 243: igfhv LfcE svsta NIFM_AZOCH : 251- 254: starq LtlE eilpr NIFM_AZOCH : 253- 255: arqlt Le-E ilprl NIFM_AZOVI : 30- 32: capge Ls-E dqlqq NIFM_AZOVI : 68- 70: ippsq Le-E awahi NIFM_AZOVI : 103- 106: gmram LarE lrvea NIFM_AZOVI : 107- 110: mlare LrvE avldc NIFM_AZOVI : 120- 122: cvcag Lp-E isdtd NIFM_AZOVI : 201- 204: amqgg LlgE vvpgt NIFM_AZOVI : 202- 204: mqggl Lg-E vvpgt NIFM_AZOVI : 210- 213: vvpgt LypE ldacl NIFM_AZOVI : 239- 242: igfhv LycE svspa NIFM_AZOVI : 250- 253: sparq LtlE eilpr NIFM_AZOVI : 252- 254: arqlt Le-E ilprl NIFM_KLEPN : 59- 61: dipaa Ll-E niaas NIFM_KLEPN : 71- 73: slaiw Ld-E gdfap NIFM_KLEPN : 175- 177: hcpsa Le-E grlgw NIFM_KLEPN : 199- 201: talfs La-E nalsl NIFM_KLEPN : 217- 220: lgwhl LwcE airpa PRSA_BACSU : 57- 60: svltq LvqE kvldk PRSA_BACSU : 78- 80: eidnk Lk-E yktql PRSA_BACSU : 101- 103: ygkdy Lk-E qvkye PRSA_BACSU : 166- 169: ekfed LakE ystds PRSA_BACSU : 236- 239: dmkke LksE vleqk PRTM_LACLA : 120- 122: lrtnf Ls-E valkk PRTM_LACLC : 46- 49: vtess LykE lkqsp PRTM_LACLC : 120- 122: lrtnf Ls-E valkk PRTM_LACPA : 120- 122: lrtnf Ls-E valkk SURA_ECOLI : 153- 156: rriti LpqE vesla SURA_ECOLI : 183- 185: hilip Lp-E nptsd SURA_ECOLI : 275- 278: lkvnd LrgE sknis SURA_ECOLI : 379- 381: sfgwh Li-E lldtr SURA_HAEIN : 153- 155: lgqkm Ld-E aksqg SURA_HAEIN : 273- 276: vrdgd LtaE aytqk YA04_HAEIN : 133- 136: ilras LplE qiqng YA04_HAEIN : 173- 176: latls LadE makqs YA04_HAEIN : 325- 328: nyhiv LvqE rkaqs YA04_HAEIN : 349- 351: lvrks Lm-E sryfs YA04_HAEIN : 445- 447: egvks Le-E akidi YA04_HAEIN : 476- 478: qavkk Ls-E npesk YA04_HAEIN : 497- 499: eqtft Ls-E nkdpi YA04_HAEIN : 545- 547: veqgs Ls-E kelsq YA04_HAEIN : 573- 575: qliqg Lr-E rakie YACD_BACSU : 53- 55: treew Lk-E medqy YACD_BACSU : 124- 126: iryni Ll-E dlltr YACD_BACSU : 174- 176: earev Lk-E lkggs YACD_BACSU : 224- 226: eeakt Lk-E dewsq YACD_BACSU : 245- 247: yaiiq Lk-E klkar YACD_BACSU : 281- 284: atvkt LwkE advsw YP13_DICDI : 68- 70: qvrpq Le-E mlrqq YP13_DICDI : 84- 86: nyqkq Lr-E qakiq P 16: 7.8401 48( 14) R-x(3,4)-L Occurences: 48(14) CYPC_ECOLI : 45- 49: cpsgk Rggd-L gefrq ESS1_YEAST : 79- 83: rdhpv Rvrc-L hilik ESS1_YEAST : 81- 86: hpvrv RclhiL ikhkd ESS1_YEAST : 145- 149: cssyk Rggd-L gwfgr NIFM_AZOCH : 12- 16: gdgds Ryyl-L kiahe NIFM_AZOCH : 169- 174: eaart RieaiL krlrg NIFM_AZOCH : 249- 253: svsta Rqlt-L eeilp NIFM_AZOCH : 259- 264: eeilp RlrdrL qlrqr NIFM_AZOCH : 261- 266: ilprl RdrlqL rqrka NIFM_AZOVI : 12- 16: adgds Ryyl-L kvahe NIFM_AZOVI : 108- 113: larel RveavL dcvca NIFM_AZOVI : 168- 173: eaart RietiL krlrg NIFM_AZOVI : 248- 252: svspa Rqlt-L eeilp NIFM_AZOVI : 258- 263: eeilp RlrdrL qlrqr NIFM_AZOVI : 260- 265: ilprl RdrlqL rqrka NIFM_KLEPN : 19- 24: rsrwn RdpaaL dpadt NIFM_KLEPN : 86- 91: raaiv RhharL elafa NIFM_KLEPN : 123- 128: qtqfm RpeqrL trhll NIFM_KLEPN : 127- 132: mrpeq RltrhL lltvd NIFM_KLEPN : 130- 134: eqrlt Rhll-L tvdnd NIFM_KLEPN : 146- 150: eavhq Rilg-L yrqin NIFM_KLEPN : 260- 264: eqmis Rqpg-L cg PRSA_BACSU : 138- 143: lkgki RashiL vadkk PRTM_LACLA : 6- 10: mkkkm Rlkv-L lasta PRTM_LACLA : 6- 11: mkkkm RlkvlL astat PRTM_LACLA : 116- 120: fkesl Rtnf-L seval PRTM_LACLC : 6- 10: mkkkm Rlkv-L lasta PRTM_LACLC : 6- 11: mkkkm RlkvlL astat PRTM_LACLC : 116- 120: fkesl Rtnf-L seval PRTM_LACPA : 6- 10: mkkkm Rlkv-L lasta PRTM_LACPA : 6- 11: mkkkm RlkvlL astat PRTM_LACPA : 116- 120: fkesl Rtnf-L seval SURA_ECOLI : 148- 153: nnevr RritiL pqeve SURA_ECOLI : 149- 153: nevrr Riti-L pqeve SURA_ECOLI : 237- 241: qmgwg Riqe-L pgifa SURA_ECOLI : 290- 294: tevha Rhil-L kpspi SURA_ECOLI : 398- 403: aaqkd RayrmL mnrkf SURA_HAEIN : 9- 13: kkfvl Rsfl-L atlgc SURA_HAEIN : 173- 177: keyev Rhil-L klnpl SURA_HAEIN : 269- 273: evtgv Rdgd-L taeay YA04_HAEIN : 130- 135: yasil RaslpL eqiqn YA04_HAEIN : 164- 168: vffqk Rlar-L atlsl YA04_HAEIN : 167- 171: qkrla Rlat-L slade YA04_HAEIN : 329- 334: vlvqe RkaqsL envka YA04_HAEIN : 353- 357: slmes Ryfs-L ekqas YACD_BACSU : 49- 53: gksvt Reew-L kemed YACD_BACSU : 72- 77: dminv RvveqL akknk YACD_BACSU : 92- 96: ksevd Refl-L ikavn YACD_BACSU : 120- 124: wkdqi Ryni-L ledll YACD_BACSU : 120- 125: wkdqi RynilL edllt YP13_DICDI : 6- 10: gdprq Rggd-L gwapa YP13_DICDI : 73- 77: leeml Rqqt-L anyqk Q 17: 7.8401 63( 14) E-x(1,2)-L Occurences: 63(14) CYPC_ECOLI : 13- 16: hilvk EekL aldll CYPC_ECOLI : 14- 16: ilvke Ek-L aldll ESS1_YEAST : 131- 133: ktnsf Ea-L akers NIFM_AZOCH : 32- 35: pgels EeqL qqaer NIFM_AZOCH : 33- 35: gelse Eq-L qqaer NIFM_AZOCH : 83- 85: ryesa Ea-L qqald NIFM_AZOCH : 171- 174: artri EaiL krlrg NIFM_AZOCH : 254- 257: rqltl EeiL prlrd NIFM_AZOCH : 255- 257: qltle Ei-L prlrd NIFM_AZOCH : 278- 280: qrkwl Es-L lqqna NIFM_AZOCH : 278- 281: qrkwl EslL qqnat NIFM_AZOCH : 288- 290: qnatl En-L ahg NIFM_AZOVI : 4- 6: mas Er-L adgds NIFM_AZOVI : 32- 35: pgels EdqL qqadr NIFM_AZOVI : 83- 85: ryesp Ea-L qqald NIFM_AZOVI : 110- 113: relrv EavL dcvca NIFM_AZOVI : 170- 173: artri EtiL krlrg NIFM_AZOVI : 253- 256: rqltl EeiL prlrd NIFM_AZOVI : 254- 256: qltle Ei-L prlrd NIFM_AZOVI : 287- 289: qnatl En-L ahg NIFM_KLEPN : 125- 128: qfmrp EqrL trhll NIFM_KLEPN : 177- 180: psale EgrL gwisr NIFM_KLEPN : 193- 196: lypql EtaL fslae NIFM_KLEPN : 201- 204: lfsla EnaL slpia PRSA_BACSU : 60- 63: tqlvq EkvL dkkyk PRSA_BACSU : 108- 110: eqvky El-L tqkaa PRSA_BACSU : 131- 133: ikeyw Eg-L kgkir PRSA_BACSU : 154- 157: taeev EkkL kkgek PRSA_BACSU : 164- 166: kgekf Ed-L akeys PRSA_BACSU : 239- 241: kelks Ev-L eqkln PRSA_BACSU : 242- 245: ksevl EqkL ndnaa PRTM_LACLA : 113- 115: rssfk Es-L rtnfl PRTM_LACLA : 122- 125: tnfls EvaL kklkk PRTM_LACLA : 133- 136: lkkvs EsqL kaawk PRTM_LACLC : 43- 46: ggkvt EssL ykelk PRTM_LACLC : 113- 115: rssfk Es-L rtnfl PRTM_LACLC : 122- 125: tnfls EvaL kklkk PRTM_LACLC : 133- 136: lkkvs EsqL kaawk PRTM_LACPA : 113- 115: rssfk Es-L rtnfl PRTM_LACPA : 122- 125: tnfls EvaL kklkk PRTM_LACPA : 133- 136: lkkvs EsqL kavwk SURA_ECOLI : 72- 74: rhqim Er-L imdqi SURA_ECOLI : 94- 96: vkisd Eq-L dqaia SURA_ECOLI : 158- 160: lpqev Es-L aqqvg SURA_ECOLI : 173- 176: ndast ElnL shili SURA_ECOLI : 381- 383: gwhli El-L dtrnv SURA_HAEIN : 284- 286: tqkay Er-L vntql YA04_HAEIN : 2- 4: m Ec-L aifla YA04_HAEIN : 72- 74: lmidq El-L rqyvk YA04_HAEIN : 80- 83: rqyvk ElkL gvsde YA04_HAEIN : 259- 261: akvay Ee-L qkgan YA04_HAEIN : 292- 295: lgwvn EneL pkafe YA04_HAEIN : 453- 456: akidi EtfL krqka YA04_HAEIN : 462- 465: krqka EnaL ngkaq YA04_HAEIN : 547- 550: qgsls EkeL sqfam YACD_BACSU : 50- 53: ksvtr EewL kemed YACD_BACSU : 51- 53: svtre Ew-L kemed YACD_BACSU : 75- 77: nvrvv Eq-L akknk YACD_BACSU : 93- 95: sevdr Ef-L likav YACD_BACSU : 93- 96: sevdr EflL ikavn YACD_BACSU : 126- 128: ynill Ed-L ltrdi YACD_BACSU : 126- 129: ynill EdlL trdid YACD_BACSU : 172- 174: eeear Ev-L kelkg YACD_BACSU : 247- 249: iiqlk Ek-L kartf YP13_DICDI : 69- 72: vrpql EemL rqqtl YP13_DICDI : 70- 72: rpqle Em-L rqqtl R 18: 7.8401 42( 14) E-x(2,3)-L Occurences: 42(14) CYPC_ECOLI : 13- 16: hilvk Eek-L aldll CYPC_ECOLI : 14- 18: ilvke EklaL dlleq ESS1_YEAST : 113- 117: qdatd ElktL itrld NIFM_AZOCH : 32- 35: pgels Eeq-L qqaer NIFM_AZOCH : 49- 53: rqkhi EdavL rcpda NIFM_AZOCH : 171- 174: artri Eai-L krlrg NIFM_AZOCH : 254- 257: rqltl Eei-L prlrd NIFM_AZOCH : 278- 281: qrkwl Esl-L qqnat NIFM_AZOVI : 32- 35: pgels Edq-L qqadr NIFM_AZOVI : 49- 53: rqrhi EdavL rspda NIFM_AZOVI : 110- 113: relrv Eav-L dcvca NIFM_AZOVI : 170- 173: artri Eti-L krlrg NIFM_AZOVI : 253- 256: rqltl Eei-L prlrd NIFM_KLEPN : 125- 128: qfmrp Eqr-L trhll NIFM_KLEPN : 176- 180: cpsal EegrL gwisr NIFM_KLEPN : 177- 180: psale Egr-L gwisr NIFM_KLEPN : 193- 196: lypql Eta-L fslae NIFM_KLEPN : 201- 204: lfsla Ena-L slpia PRSA_BACSU : 60- 63: tqlvq Ekv-L dkkyk PRSA_BACSU : 154- 157: taeev Ekk-L kkgek PRSA_BACSU : 242- 245: ksevl Eqk-L ndnaa PRTM_LACLA : 122- 125: tnfls Eva-L kklkk PRTM_LACLA : 133- 136: lkkvs Esq-L kaawk PRTM_LACLC : 43- 46: ggkvt Ess-L ykelk PRTM_LACLC : 122- 125: tnfls Eva-L kklkk PRTM_LACLC : 133- 136: lkkvs Esq-L kaawk PRTM_LACPA : 122- 125: tnfls Eva-L kklkk PRTM_LACPA : 133- 136: lkkvs Esq-L kavwk SURA_ECOLI : 156- 160: tilpq EvesL aqqvg SURA_ECOLI : 173- 176: ndast Eln-L shili SURA_HAEIN : 144- 148: dvtre EvvaL gqkml YA04_HAEIN : 80- 83: rqyvk Elk-L gvsde YA04_HAEIN : 292- 295: lgwvn Ene-L pkafe YA04_HAEIN : 453- 456: akidi Etf-L krqka YA04_HAEIN : 462- 465: krqka Ena-L ngkaq YA04_HAEIN : 541- 545: alnkv EqgsL sekel YA04_HAEIN : 547- 550: qgsls Eke-L sqfam YACD_BACSU : 50- 53: ksvtr Eew-L kemed YACD_BACSU : 93- 96: sevdr Efl-L ikavn YACD_BACSU : 126- 129: ynill Edl-L trdid YACD_BACSU : 220- 224: sayie EaktL kedew YP13_DICDI : 69- 72: vrpql Eem-L rqqtl S 19: 7.8401 54( 14) V-x(3,4)-L Occurences: 54(14) CYPC_ECOLI : 11- 16: alhil VkeekL aldll ESS1_YEAST : 78- 83: lrdhp VrvrcL hilik NIFM_AZOCH : 109- 113: arelk Vqav-L dcica NIFM_AZOCH : 206- 211: gllge VvpgtL ypeld NIFM_AZOCH : 207- 211: llgev Vpgt-L ypeld NIFM_AZOVI : 109- 113: arelr Veav-L dcvca NIFM_AZOVI : 116- 120: avldc Vcag-L peisd NIFM_AZOVI : 205- 210: gllge VvpgtL ypeld NIFM_AZOVI : 206- 210: llgev Vpgt-L ypeld NIFM_KLEPN : 110- 115: pdlst VqawyL rhqtq NIFM_KLEPN : 143- 148: ndrea VhqriL glyrq PRSA_BACSU : 36- 41: tdagd VtkgeL ytnmk PRSA_BACSU : 53- 57: tagas Vltq-L vqekv PRSA_BACSU : 58- 63: vltql VqekvL dkkyk PRSA_BACSU : 105- 109: ylkeq Vkye-L ltqka PRSA_BACSU : 105- 110: ylkeq VkyelL tqkaa PRSA_BACSU : 153- 157: ktaee Vekk-L kkgek PRSA_BACSU : 240- 245: elkse VleqkL ndnaa PRSA_BACSU : 266- 271: kadie VkdkdL kdtfn PRTM_LACLA : 123- 128: nflse ValkkL kkvse PRTM_LACLA : 131- 136: kklkk VsesqL kaawk PRTM_LACLA : 149- 153: qpkvt Vqhi-L tsded PRTM_LACLA : 163- 167: dtakq Visd-L aagkd PRTM_LACLA : 268- 273: simqr VisqvL knqhv PRTM_LACLC : 41- 46: ysggk VtessL ykelk PRTM_LACLC : 123- 128: nflse ValkkL kkvse PRTM_LACLC : 131- 136: kklkk VsesqL kaawk PRTM_LACLC : 149- 153: qpkvt Vqhi-L tsded PRTM_LACLC : 163- 167: dtakq Visd-L aagkd PRTM_LACLC : 268- 273: simqr VisqvL knqhv PRTM_LACPA : 123- 128: nflse ValkkL kkvse PRTM_LACPA : 131- 136: kklkk VsesqL kavwk PRTM_LACPA : 149- 153: qpkvt Vqhi-L tsded PRTM_LACPA : 163- 167: dtakq Visd-L aagkd PRTM_LACPA : 268- 273: simqr VisqvL knqhv SURA_ECOLI : 265- 270: pirsg VgfhiL kvndl SURA_HAEIN : 7- 12: kmkkf VlrsfL latlg SURA_HAEIN : 172- 176: gkeye Vrhi-L lklnp SURA_HAEIN : 172- 177: gkeye VrhilL klnpl SURA_HAEIN : 268- 273: levtg VrdgdL taeay SURA_HAEIN : 287- 291: ayerl Vntq-L qdatn YA04_HAEIN : 78- 83: llrqy VkelkL gvsde YA04_HAEIN : 110- 115: kfdna VyqriL qqnhl YA04_HAEIN : 206- 211: peqvk VqyidL sadni YA04_HAEIN : 256- 261: eqdak VayeeL qkgan YA04_HAEIN : 290- 295: gdlgw VneneL pkafe YA04_HAEIN : 345- 349: qiadl Vrks-L mesry YA04_HAEIN : 394- 398: fsrqn Vpag-L nfpnv YA04_HAEIN : 532- 537: nsngd VvvvaL nkveq YA04_HAEIN : 533- 537: sngdv Vvva-L nkveq YA04_HAEIN : 540- 545: valnk VeqgsL sekel YACD_BACSU : 21- 25: vccia Vayt-L tksqa YACD_BACSU : 73- 77: minvr Vveq-L akknk YACD_BACSU : 90- 95: iskse VdrefL likav YACD_BACSU : 173- 177: eeare Vlke-L kggss YP13_DICDI : 64- 68: pamdq Vrpq-L eemlr T 20: 7.8401 35( 14) V-x(0,1)-E Occurences: 35(14) CYPC_ECOLI : 11- 13: alhil VkE eklal CYPC_ECOLI : 70- 72: vfscp VlE ptgpl ESS1_YEAST : 170- 172: afqlk VgE vsdiv ESS1_YEAST : 177- 178: evsdi V-E sgsgv NIFM_AZOCH : 230- 232: gqlsp VlE spigf NIFM_AZOVI : 109- 110: arelr V-E avldc NIFM_AZOVI : 229- 231: gelsp VlE spigf NIFM_KLEPN : 50- 52: tivar VpE gdipa PRSA_BACSU : 58- 60: vltql VqE kvldk PRSA_BACSU : 153- 154: ktaee V-E kklkk PRSA_BACSU : 240- 242: elkse VlE qklnd PRSA_BACSU : 251- 253: ndnaa VqE avqkv PRTM_LACLA : 41- 43: ysggk VtE ssfyk PRTM_LACLA : 131- 133: kklkk VsE sqlka PRTM_LACLC : 41- 43: ysggk VtE sslyk PRTM_LACLC : 131- 133: kklkk VsE sqlka PRTM_LACPA : 41- 43: ysggk VtE snfyk PRTM_LACPA : 131- 133: kklkk VsE sqlka SURA_ECOLI : 37- 39: vnngv VlE sdvdg SURA_ECOLI : 157- 158: ilpqe V-E slaqq SURA_ECOLI : 192- 194: ptsdq VnE aesqa SURA_ECOLI : 284- 286: sknis VtE vharh SURA_HAEIN : 40- 42: vdgip VlE sqvra SURA_HAEIN : 72- 74: lvqka VqE sgvki SURA_HAEIN : 88- 89: eidhi V-E dtaar YA04_HAEIN : 78- 80: llrqy VkE lklgv YA04_HAEIN : 225- 226: lqvtd V-E iaqyy YA04_HAEIN : 290- 292: gdlgw VnE nelpk YA04_HAEIN : 326- 328: yhivl VqE rkaqs YA04_HAEIN : 383- 385: aagvk VqE sdyfs YA04_HAEIN : 540- 541: valnk V-E qgsls YACD_BACSU : 73- 75: minvr VvE qlakk YACD_BACSU : 74- 75: invrv V-E qlakk YACD_BACSU : 206- 208: gdlgf VtE asdni YP13_DICDI : 56- 57: ddtrp V-E fpamd Number of patterns evaluated by Pratt:164 Total running time: 0 seconds