------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file PP2C PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PP2C.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: KAPP_ARATH 582 P2C1_SCHPO 347 P2C2_SCHPO 370 P2C3_SCHPO 414 P2CA_HUMAN 382 P2CA_RABIT 382 P2CA_RAT 382 P2CB_MOUSE 390 P2CB_RAT 390 P2C_LEICH 406 P2C_YEAST 281 PDP_BOVIN 538 YBF6_YEAST 468 YBX5_YEAST 393 YER9_YEAST 464 Pratt run started at Thu Feb 6 20:50:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.3503 15( 15) R-x(2)-G-x(1,2)-L-x(1,3)-R-x(3)-D 2: 16.1802 16( 15) D-x(0,1)-F-x(5)-D-G 3: 16.1802 16( 15) D-x(3,4)-L-x(2)-D-G 4: 15.6802 15( 15) L-A-x(0,2)-R-x(3)-D 5: 15.6802 15( 15) G-x-L-x(3)-R-x(3,5)-D 6: 15.6802 21( 15) D-x(4,5)-A-x(1,2)-D-G 7: 15.1802 17( 15) R-x(1,2)-G-x(3,5)-R-x(3)-D 8: 15.1802 17( 15) N-x(1,3)-S-x(2)-V-x(3,4)-G 9: 14.6802 16( 15) G-x(3,5)-R-x(3)-D-x(1,3)-K 10: 14.6802 32( 15) D-x(1,3)-F-x(3,5)-D-G 11: 12.5102 16( 15) L-x(2)-D-G 12: 12.5102 17( 15) F-x(5)-D-G 13: 12.5102 16( 15) N-x-G-D 14: 12.5102 15( 15) D-G-H 15: 12.0102 20( 15) D-x(3,4)-L-x(2)-D 16: 12.0102 16( 15) D-G-x(1,2)-D 17: 12.0102 31( 15) A-x(1,2)-D-G 18: 12.0102 20( 15) R-V-x(4,5)-A 19: 12.0102 28( 15) G-x-L-x(3,4)-R 20: 12.0102 18( 15) S-x(2)-V-x(4,5)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.6855 15( 15) F-x-[ILV]-[IL]-[AC]-[CST]-D-G-[ILV]-[FW]-[DE] B 2: 31.1130 15( 15) R-[ILV]-x-G-x(1,2)-L-x(1,3)-R-x-[FIL]-[GS]-D-x(3)-[DK] C 3: 27.4525 15( 15) D-x(0,1)-F-[AGILV]-[GILV]-x(2)-[CDST]-D-G-[FILV]-x-[ADE] D 4: 24.2811 15( 15) R-x(1,2)-G-x(3,5)-R-x-[FIL]-[GS]-D-x(3)-[DK] E 5: 24.2435 15( 15) D-G-H-[AGV]-[GN]-x(2)-[ACV]-[AS] F 6: 23.9437 23( 15) D-x(1,3)-F-x(3,5)-D-G-[ILV]-[FW]-[DE] G 7: 20.7586 15( 15) N-x-G-D-[AS]-x(2)-[ILMV]-[AIL] H 8: 19.4982 16( 15) D-x(3,4)-L-[AC]-x-D-G I 9: 18.3420 15( 15) D-x(4,5)-A-x(1,2)-D-G-[ILV] J 10: 18.1886 15( 15) A-x(1,2)-D-G-[ILV]-x(4)-[ADGNST]-[DENPS] K 11: 17.8420 15( 15) R-[ILV]-x-G-x(1,2)-L-x(1,3)-R L 12: 16.6055 17( 15) D-x(3,4)-L-x-[ACDST]-D-[DGN] M 13: 15.8281 16( 15) L-[AC]-x-D-G N 14: 15.6802 15( 15) L-A-x(0,2)-R-x(3)-D O 15: 15.6802 15( 15) G-x-L-x(3)-R-x(3,5)-D P 16: 15.1802 17( 15) N-x(1,3)-S-x(2)-V-x(3,4)-G Q 17: 14.6802 16( 15) G-x(3,5)-R-x(3)-D-x(1,3)-K R 18: 14.6609 20( 15) G-x-L-x(3,4)-R-[ANV] S 19: 13.4232 16( 15) D-G-x(1,2)-D-x(2)-[ADGNSTV] T 20: 12.5102 16( 15) N-x-G-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.6855 15( 15) F-x-[ILV]-[IL]-[AC]-[CST]-D-G-[ILV]-[FW]-[DE] Occurences: 15(15) KAPP_ARATH : 516- 526: sskdv FaVLASDGLWD vvspk P2C1_SCHPO : 269- 279: nghde FfIIACDGLWD vvsdq P2C2_SCHPO : 227- 237: dpdde FlILACDGIWD ckssq P2C3_SCHPO : 224- 234: tddde FvVLACDGIWD cktsq P2CA_HUMAN : 233- 243: eeddq FiILACDGIWD vmgne P2CA_RABIT : 233- 243: eeddq FiILACDGIWD vmgne P2CA_RAT : 233- 243: eeddq FiILACDGIWD vmgne P2CB_MOUSE : 237- 247: aeede FvVLACDGIWD vmsne P2CB_RAT : 237- 247: aeede FvVLACDGIWD vmsne P2C_LEICH : 215- 225: fdsnd FvLLCCDGVFE gnfpn P2C_YEAST : 227- 237: tsedk FlILACDGLWD viddq PDP_BOVIN : 412- 422: rpqdk FlVLATDGLWE tmhrq YBF6_YEAST : 228- 238: ydede FvILACDGIWD cltsq YBX5_YEAST : 304- 314: yskde FlVLACDGIWD iynnk YER9_YEAST : 228- 238: ydrde FvILACDGIWD cltsq B 2: 31.1130 15( 15) R-[ILV]-x-G-x(1,2)-L-x(1,3)-R-x-[FIL]-[GS]-D-x(3)-[DK] Occurences: 15(15) KAPP_ARATH : 474- 490: rdget RLfGinLa--RmLGDkfpK qqdsr P2C1_SCHPO : 231- 248: lmvqn RInGv-LavtRaLGDtylK elvsa P2C2_SCHPO : 181- 198: fidfg RVnGs-LalsRaIGDfeyK kdssl P2C3_SCHPO : 179- 196: fvdfg RVnGn-LalsRaIGDfefK nsnle P2CA_HUMAN : 186- 203: svmiq RVnGs-LavsRaLGDfdyK cvhgk P2CA_RABIT : 186- 203: svmiq RVnGs-LavsRaLGDfdyK cvhgk P2CA_RAT : 186- 203: svmiq RVnGs-LavsRaLGDfdyK cvhgk P2CB_MOUSE : 191- 208: svmiq RVnGs-LavsRaLGDydyK cvdgk P2CB_RAT : 191- 208: svmiq RVnGs-LavsRaLGDydyK cvdgk P2C_LEICH : 169- 186: rvenn RVdGs-LavsRaFGDreyK lgsgs P2C_YEAST : 190- 207: limks RVnGm-LavtRsLGDkffD slvvg PDP_BOVIN : 342- 359: vvkqd RLlGl-LmpfRaFGDvkfK wsidl YBF6_YEAST : 181- 198: fvemd RVnGn-LalsRaIGDfefK sntkl YBX5_YEAST : 239- 256: tvslg RVgGv-LalsRaFSDfqfK rgvty YER9_YEAST : 181- 198: fvemd RVnGn-LalsRaIGDfefK snpkl C 3: 27.4525 15( 15) D-x(0,1)-F-[AGILV]-[GILV]-x(2)-[CDST]-D-G-[FILV]-x-[ADE] Occurences: 15(15) KAPP_ARATH : 514- 526: dqssk DvFAVlaSDGLwD vvspk P2C1_SCHPO : 95- 106: hicly D-FGGnqDDGFvA vydgh P2C2_SCHPO : 225- 237: nidpd DeFLIlaCDGIwD ckssq P2C3_SCHPO : 222- 234: eitdd DeFVVlaCDGIwD cktsq P2CA_HUMAN : 231- 243: rseed DqFIIlaCDGIwD vmgne P2CA_RABIT : 231- 243: rseed DqFIIlaCDGIwD vmgne P2CA_RAT : 231- 243: rseed DqFIIlaCDGIwD vmgne P2CB_MOUSE : 235- 247: vraee DeFVVlaCDGIwD vmsne P2CB_RAT : 235- 247: lraee DeFVVlaCDGIwD vmsne P2C_LEICH : 214- 225: tfdsn D-FVLlcCDGVfE gnfpn P2C_YEAST : 225- 237: eitse DkFLIlaCDGLwD viddq PDP_BOVIN : 410- 422: rlrpq DkFLVlaTDGLwE tmhrq YBF6_YEAST : 226- 238: lnyde DeFVIlaCDGIwD cltsq YBX5_YEAST : 302- 314: idysk DeFLVlaCDGIwD iynnk YER9_YEAST : 226- 238: ldydr DeFVIlaCDGIwD cltsq D 4: 24.2811 15( 15) R-x(1,2)-G-x(3,5)-R-x-[FIL]-[GS]-D-x(3)-[DK] Occurences: 15(15) KAPP_ARATH : 474- 490: rdget RlfGinla-RmLGDkfpK qqdsr P2C1_SCHPO : 231- 248: lmvqn RinGvlavtRaLGDtylK elvsa P2C2_SCHPO : 181- 198: fidfg RvnGslalsRaIGDfeyK kdssl P2C3_SCHPO : 179- 196: fvdfg RvnGnlalsRaIGDfefK nsnle P2CA_HUMAN : 186- 203: svmiq RvnGslavsRaLGDfdyK cvhgk P2CA_RABIT : 186- 203: svmiq RvnGslavsRaLGDfdyK cvhgk P2CA_RAT : 186- 203: svmiq RvnGslavsRaLGDfdyK cvhgk P2CB_MOUSE : 191- 208: svmiq RvnGslavsRaLGDydyK cvdgk P2CB_RAT : 191- 208: svmiq RvnGslavsRaLGDydyK cvdgk P2C_LEICH : 169- 186: rvenn RvdGslavsRaFGDreyK lgsgs P2C_YEAST : 190- 207: limks RvnGmlavtRsLGDkffD slvvg PDP_BOVIN : 342- 359: vvkqd RllGllmpfRaFGDvkfK wsidl YBF6_YEAST : 181- 198: fvemd RvnGnlalsRaIGDfefK sntkl YBX5_YEAST : 239- 256: tvslg RvgGvlalsRaFSDfqfK rgvty YER9_YEAST : 181- 198: fvemd RvnGnlalsRaIGDfefK snpkl E 5: 24.2435 15( 15) D-G-H-[AGV]-[GN]-x(2)-[ACV]-[AS] Occurences: 15(15) KAPP_ARATH : 347- 355: lfcvc DGHGGsgAA qsaik P2C1_SCHPO : 109- 117: fvavy DGHAGiqAS dycqk P2C2_SCHPO : 63- 71: ffgvf DGHGGdrVA kycrq P2C3_SCHPO : 62- 70: ffavy DGHGGdkVA kwcgs P2CA_HUMAN : 60- 68: ffavy DGHAGsqVA kycce P2CA_RABIT : 60- 68: ffavy DGHAGsqVA kycce P2CA_RAT : 60- 68: ffavy DGHAGsqVA kycce P2CB_MOUSE : 60- 68: ffavy DGHAGsrVA nycst P2CB_RAT : 60- 68: ffavy DGHAGsrVA nycst P2C_LEICH : 55- 63: ffgvf DGHVNdqCS qyler P2C_YEAST : 58- 66: yfavf DGHAGiqAS kwcgk PDP_BOVIN : 144- 152: llgvf DGHAGcaCS qavse YBF6_YEAST : 62- 70: fygif DGHGGssVA efcgs YBX5_YEAST : 83- 91: vfavf DGHGGddCS kflsg YER9_YEAST : 62- 70: fygif DGHGGakVA eycgn F 6: 23.9437 23( 15) D-x(1,3)-F-x(3,5)-D-G-[ILV]-[FW]-[DE] Occurences: 23(15) KAPP_ARATH : 514- 526: dqssk Dv--FavlasDGLWD vvspk P2C1_SCHPO : 267- 279: iwngh Def-Fiiac-DGLWD vvsdq P2C1_SCHPO : 267- 279: iwngh De--FfiiacDGLWD vvsdq P2C2_SCHPO : 224- 237: hnidp Dde-FlilacDGIWD ckssq P2C2_SCHPO : 225- 237: nidpd De--FlilacDGIWD ckssq P2C3_SCHPO : 220- 234: vheit DddeFvvlacDGIWD cktsq P2C3_SCHPO : 221- 234: heitd Dde-FvvlacDGIWD cktsq P2C3_SCHPO : 222- 234: eitdd De--FvvlacDGIWD cktsq P2CA_HUMAN : 230- 243: ersee Ddq-FiilacDGIWD vmgne P2CA_HUMAN : 231- 243: rseed Dq--FiilacDGIWD vmgne P2CA_RABIT : 230- 243: ersee Ddq-FiilacDGIWD vmgne P2CA_RABIT : 231- 243: rseed Dq--FiilacDGIWD vmgne P2CA_RAT : 230- 243: ersee Ddq-FiilacDGIWD vmgne P2CA_RAT : 231- 243: rseed Dq--FiilacDGIWD vmgne P2CB_MOUSE : 235- 247: vraee De--FvvlacDGIWD vmsne P2CB_RAT : 235- 247: lraee De--FvvlacDGIWD vmsne P2C_LEICH : 211- 225: kdftf DsndFvllccDGVFE gnfpn P2C_YEAST : 225- 237: eitse Dk--FlilacDGLWD viddq PDP_BOVIN : 410- 422: rlrpq Dk--FlvlatDGLWE tmhrq YBF6_YEAST : 224- 238: hnlny DedeFvilacDGIWD cltsq YBF6_YEAST : 226- 238: lnyde De--FvilacDGIWD cltsq YBX5_YEAST : 302- 314: idysk De--FlvlacDGIWD iynnk YER9_YEAST : 224- 238: hsldy DrdeFvilacDGIWD cltsq YER9_YEAST : 226- 238: ldydr De--FvilacDGIWD cltsq G 7: 20.7586 15( 15) N-x-G-D-[AS]-x(2)-[ILMV]-[AIL] Occurences: 15(15) KAPP_ARATH : 429- 437: faqca NlGDSacVI hlggr P2C1_SCHPO : 188- 196: vlyta NaGDAriVL crdgk P2C2_SCHPO : 138- 146: viyca NaGDSrtVL grkgt P2C3_SCHPO : 136- 144: klyca NaGDSrtVL gskgi P2CA_HUMAN : 143- 151: htyfi NcGDSrgLL crnrk P2CA_RABIT : 143- 151: htyfi NcGDSrgLL crnrk P2CA_RAT : 143- 151: htyfi NcGDSrgLL crnrk P2CB_MOUSE : 148- 156: hmyfi NcGDSraVL crngq P2CB_RAT : 148- 156: hiyfi NcGDSraVL crngq P2C_LEICH : 126- 134: hlqvg NvGDSrvVA cidgv P2C_YEAST : 147- 155: klyta NvGDSriVL frngn PDP_BOVIN : 288- 296: dlhva NtGDSraML gvqee YBF6_YEAST : 138- 146: llica NsGDSrtVL stggn YBX5_YEAST : 195- 203: slyva NcGDSrcIL ssksn YER9_YEAST : 138- 146: llvcg NaGDSrtVL atdgn H 8: 19.4982 16( 15) D-x(3,4)-L-[AC]-x-D-G Occurences: 16(15) KAPP_ARATH : 514- 523: dqssk DvfavLAsDG lwdvv P2C1_SCHPO : 191- 200: tanag DarivLCrDG kairl P2C2_SCHPO : 225- 234: nidpd DefliLAcDG iwdck P2C3_SCHPO : 222- 231: eitdd DefvvLAcDG iwdck P2CA_HUMAN : 231- 240: rseed DqfiiLAcDG iwdvm P2CA_RABIT : 231- 240: rseed DqfiiLAcDG iwdvm P2CA_RAT : 231- 240: rseed DqfiiLAcDG iwdvm P2CB_MOUSE : 235- 244: vraee DefvvLAcDG iwdvm P2CB_RAT : 235- 244: lraee DefvvLAcDG iwdvm P2C_LEICH : 214- 222: tfdsn Dfvl-LCcDG vfegn P2C_YEAST : 225- 234: eitse DkfliLAcDG lwdvi PDP_BOVIN : 410- 419: rlrpq DkflvLAtDG lwetm YBF6_YEAST : 226- 235: lnyde DefviLAcDG iwdcl YBX5_YEAST : 302- 311: idysk DeflvLAcDG iwdiy YER9_YEAST : 141- 150: cgnag DsrtvLAtDG nakal YER9_YEAST : 226- 235: ldydr DefviLAcDG iwdcl I 9: 18.3420 15( 15) D-x(4,5)-A-x(1,2)-D-G-[ILV] Occurences: 15(15) KAPP_ARATH : 514- 524: dqssk DvfavlAs-DGL wdvvs P2C1_SCHPO : 267- 277: iwngh DeffiiAc-DGL wdvvs P2C2_SCHPO : 225- 235: nidpd DeflilAc-DGI wdcks P2C3_SCHPO : 222- 232: eitdd DefvvlAc-DGI wdckt P2CA_HUMAN : 231- 241: rseed DqfiilAc-DGI wdvmg P2CA_RABIT : 231- 241: rseed DqfiilAc-DGI wdvmg P2CA_RAT : 231- 241: rseed DqfiilAc-DGI wdvmg P2CB_MOUSE : 235- 245: vraee DefvvlAc-DGI wdvms P2CB_RAT : 235- 245: lraee DefvvlAc-DGI wdvms P2C_LEICH : 129- 139: vgnvg Dsrvv-AciDGV cvplt P2C_YEAST : 225- 235: eitse DkflilAc-DGL wdvid PDP_BOVIN : 410- 420: rlrpq DkflvlAt-DGL wetmh YBF6_YEAST : 226- 236: lnyde DefvilAc-DGI wdclt YBX5_YEAST : 302- 312: idysk DeflvlAc-DGI wdiyn YER9_YEAST : 226- 236: ldydr DefvilAc-DGI wdclt J 10: 18.1886 15( 15) A-x(1,2)-D-G-[ILV]-x(4)-[ADGNST]-[DENPS] Occurences: 15(15) KAPP_ARATH : 520- 530: vfavl As-DGLwdvvSP kkavq P2C1_SCHPO : 273- 283: effii Ac-DGLwdvvSD qeavd P2C2_SCHPO : 231- 241: eflil Ac-DGIwdckSS qqvve P2C3_SCHPO : 228- 238: efvvl Ac-DGIwdckTS qqvie P2CA_HUMAN : 237- 247: qfiil Ac-DGIwdvmGN eelcd P2CA_RABIT : 237- 247: qfiil Ac-DGIwdvmGN eelcd P2CA_RAT : 237- 247: qfiil Ac-DGIwdvmGN eelcd P2CB_MOUSE : 241- 251: efvvl Ac-DGIwdvmSN eelce P2CB_RAT : 241- 251: efvvl Ac-DGIwdvmSN eelce P2C_LEICH : 134- 145: dsrvv AciDGVcvplTE dhkpn P2C_YEAST : 231- 241: kflil Ac-DGLwdviDD qdace PDP_BOVIN : 277- 288: atacv AhvDGVdlhvAN tgdsr YBF6_YEAST : 232- 242: efvil Ac-DGIwdclTS qecvd YBX5_YEAST : 308- 318: eflvl Ac-DGIwdiyNN kqlih YER9_YEAST : 232- 242: efvil Ac-DGIwdclTS qdcvd K 11: 17.8420 15( 15) R-[ILV]-x-G-x(1,2)-L-x(1,3)-R Occurences: 15(15) KAPP_ARATH : 474- 482: rdget RLfGinLa--R mlgdk P2C1_SCHPO : 231- 240: lmvqn RInGv-LavtR algdt P2C2_SCHPO : 181- 190: fidfg RVnGs-LalsR aigdf P2C3_SCHPO : 179- 188: fvdfg RVnGn-LalsR aigdf P2CA_HUMAN : 186- 195: svmiq RVnGs-LavsR algdf P2CA_RABIT : 186- 195: svmiq RVnGs-LavsR algdf P2CA_RAT : 186- 195: svmiq RVnGs-LavsR algdf P2CB_MOUSE : 191- 200: svmiq RVnGs-LavsR algdy P2CB_RAT : 191- 200: svmiq RVnGs-LavsR algdy P2C_LEICH : 169- 178: rvenn RVdGs-LavsR afgdr P2C_YEAST : 190- 199: limks RVnGm-LavtR slgdk PDP_BOVIN : 342- 351: vvkqd RLlGl-LmpfR afgdv YBF6_YEAST : 181- 190: fvemd RVnGn-LalsR aigdf YBX5_YEAST : 239- 248: tvslg RVgGv-LalsR afsdf YER9_YEAST : 181- 190: fvemd RVnGn-LalsR aigdf L 12: 16.6055 17( 15) D-x(3,4)-L-x-[ACDST]-D-[DGN] Occurences: 17(15) KAPP_ARATH : 52- 61: tfkvg DlqrpLiSDD gnliq KAPP_ARATH : 514- 523: dqssk DvfavLaSDG lwdvv P2C1_SCHPO : 331- 339: npgdl Ddsg-LtADN dsysn P2C2_SCHPO : 225- 234: nidpd DefliLaCDG iwdck P2C3_SCHPO : 222- 231: eitdd DefvvLaCDG iwdck P2CA_HUMAN : 231- 240: rseed DqfiiLaCDG iwdvm P2CA_RABIT : 231- 240: rseed DqfiiLaCDG iwdvm P2CA_RAT : 231- 240: rseed DqfiiLaCDG iwdvm P2CB_MOUSE : 235- 244: vraee DefvvLaCDG iwdvm P2CB_RAT : 235- 244: lraee DefvvLaCDG iwdvm P2C_LEICH : 214- 222: tfdsn Dfvl-LcCDG vfegn P2C_YEAST : 225- 234: eitse DkfliLaCDG lwdvi PDP_BOVIN : 410- 419: rlrpq DkflvLaTDG lwetm YBF6_YEAST : 226- 235: lnyde DefviLaCDG iwdcl YBX5_YEAST : 302- 311: idysk DeflvLaCDG iwdiy YER9_YEAST : 141- 150: cgnag DsrtvLaTDG nakal YER9_YEAST : 226- 235: ldydr DefviLaCDG iwdcl M 13: 15.8281 16( 15) L-[AC]-x-D-G Occurences: 16(15) KAPP_ARATH : 519- 523: dvfav LAsDG lwdvv P2C1_SCHPO : 196- 200: dariv LCrDG kairl P2C2_SCHPO : 230- 234: defli LAcDG iwdck P2C3_SCHPO : 227- 231: defvv LAcDG iwdck P2CA_HUMAN : 236- 240: dqfii LAcDG iwdvm P2CA_RABIT : 236- 240: dqfii LAcDG iwdvm P2CA_RAT : 236- 240: dqfii LAcDG iwdvm P2CB_MOUSE : 240- 244: defvv LAcDG iwdvm P2CB_RAT : 240- 244: defvv LAcDG iwdvm P2C_LEICH : 218- 222: ndfvl LCcDG vfegn P2C_YEAST : 230- 234: dkfli LAcDG lwdvi PDP_BOVIN : 415- 419: dkflv LAtDG lwetm YBF6_YEAST : 231- 235: defvi LAcDG iwdcl YBX5_YEAST : 307- 311: deflv LAcDG iwdiy YER9_YEAST : 146- 150: dsrtv LAtDG nakal YER9_YEAST : 231- 235: defvi LAcDG iwdcl N 14: 15.6802 15( 15) L-A-x(0,2)-R-x(3)-D Occurences: 15(15) KAPP_ARATH : 480- 486: lfgin LA--RmlgD kfpkq P2C1_SCHPO : 236- 244: ringv LAvtRalgD tylke P2C2_SCHPO : 186- 194: rvngs LAlsRaigD feykk P2C3_SCHPO : 184- 192: rvngn LAlsRaigD fefkn P2CA_HUMAN : 191- 199: rvngs LAvsRalgD fdykc P2CA_RABIT : 191- 199: rvngs LAvsRalgD fdykc P2CA_RAT : 191- 199: rvngs LAvsRalgD fdykc P2CB_MOUSE : 196- 204: rvngs LAvsRalgD ydykc P2CB_RAT : 196- 204: rvngs LAvsRalgD ydykc P2C_LEICH : 174- 182: rvdgs LAvsRafgD reykl P2C_YEAST : 195- 203: rvngm LAvtRslgD kffds PDP_BOVIN : 510- 516: slpee LA--RmyrD ditii YBF6_YEAST : 186- 194: rvngn LAlsRaigD fefks YBX5_YEAST : 244- 252: rvggv LAlsRafsD fqfkr YER9_YEAST : 186- 194: rvngn LAlsRaigD fefks O 15: 15.6802 15( 15) G-x-L-x(3)-R-x(3,5)-D Occurences: 15(15) KAPP_ARATH : 557- 569: ekian GlLneaRamrtkD ntsii P2C1_SCHPO : 234- 244: qnrin GvLavtRalg--D tylke P2C2_SCHPO : 184- 194: fgrvn GsLalsRaig--D feykk P2C3_SCHPO : 182- 192: fgrvn GnLalsRaig--D fefkn P2CA_HUMAN : 189- 199: iqrvn GsLavsRalg--D fdykc P2CA_HUMAN : 189- 201: iqrvn GsLavsRalgdfD ykcvh P2CA_RABIT : 189- 199: iqrvn GsLavsRalg--D fdykc P2CA_RABIT : 189- 201: iqrvn GsLavsRalgdfD ykcvh P2CA_RAT : 189- 199: iqrvn GsLavsRalg--D fdykc P2CA_RAT : 189- 201: iqrvn GsLavsRalgdfD ykcvh P2CB_MOUSE : 194- 204: iqrvn GsLavsRalg--D ydykc P2CB_MOUSE : 194- 206: iqrvn GsLavsRalgdyD ykcvd P2CB_RAT : 194- 204: iqrvn GsLavsRalg--D ydykc P2CB_RAT : 194- 206: iqrvn GsLavsRalgdyD ykcvd P2C_LEICH : 172- 182: nnrvd GsLavsRafg--D reykl P2C_YEAST : 193- 203: ksrvn GmLavtRslg--D kffds PDP_BOVIN : 345- 355: qdrll GlLmpfRafg--D vkfkw YBF6_YEAST : 184- 194: mdrvn GnLalsRaig--D fefks YBX5_YEAST : 242- 252: lgrvg GvLalsRafs--D fqfkr YER9_YEAST : 184- 194: mdrvn GnLalsRaig--D fefks P 16: 15.1802 17( 15) N-x(1,3)-S-x(2)-V-x(3,4)-G Occurences: 17(15) KAPP_ARATH : 429- 440: faqca NlgdSacVihl-G gryiq KAPP_ARATH : 429- 441: faqca NlgdSacVihlgG ryiqm P2C1_SCHPO : 215- 224: kgsda Ne--SrrVtql-G glmvq P2C1_SCHPO : 215- 225: kgsda Ne--SrrVtqlgG lmvqn P2C2_SCHPO : 138- 150: viyca NagdSrtVlgrkG taepl P2C3_SCHPO : 136- 148: klyca NagdSrtVlgskG iakpl P2CA_HUMAN : 188- 198: miqrv Ng--SlaVsralG dfdyk P2CA_RABIT : 188- 198: miqrv Ng--SlaVsralG dfdyk P2CA_RAT : 188- 198: miqrv Ng--SlaVsralG dfdyk P2CB_MOUSE : 148- 160: hmyfi NcgdSraVlcrnG qvcfs P2CB_MOUSE : 193- 203: miqrv Ng--SlaVsralG dydyk P2CB_RAT : 148- 160: hiyfi NcgdSraVlcrnG qvcfs P2CB_RAT : 193- 203: miqrv Ng--SlaVsralG dydyk P2C_LEICH : 126- 138: hlqvg NvgdSrvVacidG vcvpl P2C_YEAST : 147- 159: klyta NvgdSriVlfrnG nsirl PDP_BOVIN : 92- 103: silka Ney-SfkVpefdG knvss YBF6_YEAST : 138- 149: llica NsgdSrtVlst-G gnska YBF6_YEAST : 138- 150: llica NsgdSrtVlstgG nskam YBX5_YEAST : 187- 197: vacii Nee-SlyVanc-G dsrci YER9_YEAST : 138- 150: llvcg NagdSrtVlatdG nakal Q 17: 14.6802 16( 15) G-x(3,5)-R-x(3)-D-x(1,3)-K Occurences: 16(15) KAPP_ARATH : 477- 490: etrlf Ginla-RmlgDkfpK qqdsr P2C1_SCHPO : 200- 210: vlcrd Gkai--RlsyDh--K gsdan P2C1_SCHPO : 234- 248: qnrin GvlavtRalgDtylK elvsa P2C2_SCHPO : 184- 198: fgrvn GslalsRaigDfeyK kdssl P2C3_SCHPO : 182- 196: fgrvn GnlalsRaigDfefK nsnle P2CA_HUMAN : 189- 203: iqrvn GslavsRalgDfdyK cvhgk P2CA_RABIT : 189- 203: iqrvn GslavsRalgDfdyK cvhgk P2CA_RAT : 189- 203: iqrvn GslavsRalgDfdyK cvhgk P2CB_MOUSE : 194- 208: iqrvn GslavsRalgDydyK cvdgk P2CB_RAT : 194- 208: iqrvn GslavsRalgDydyK cvdgk P2C_LEICH : 172- 186: nnrvd GslavsRafgDreyK lgsgs P2C_YEAST : 159- 169: vlfrn Gnsi--RltyDh--K asdtl PDP_BOVIN : 345- 357: qdrll GllmpfRafgDv--K fkwsi PDP_BOVIN : 345- 359: qdrll GllmpfRafgDvkfK wsidl YBF6_YEAST : 184- 198: mdrvn GnlalsRaigDfefK sntkl YBX5_YEAST : 242- 256: lgrvg GvlalsRafsDfqfK rgvty YER9_YEAST : 184- 198: mdrvn GnlalsRaigDfefK snpkl R 18: 14.6609 20( 15) G-x-L-x(3,4)-R-[ANV] Occurences: 20(15) KAPP_ARATH : 557- 564: ekian GlLnea-RA mrtkd P2C1_SCHPO : 234- 241: qnrin GvLavt-RA lgdty P2C2_SCHPO : 184- 191: fgrvn GsLals-RA igdfe P2C3_SCHPO : 182- 189: fgrvn GnLals-RA igdfe P2CA_HUMAN : 189- 196: iqrvn GsLavs-RA lgdfd P2CA_HUMAN : 349- 356: slppg GeLask-RN vieav P2CA_RABIT : 189- 196: iqrvn GsLavs-RA lgdfd P2CA_RABIT : 349- 356: slppg GeLask-RN vieav P2CA_RAT : 189- 196: iqrvn GsLavs-RA lgdfd P2CA_RAT : 349- 356: slppg GeLask-RN vieav P2CB_MOUSE : 194- 201: iqrvn GsLavs-RA lgdyd P2CB_RAT : 194- 201: iqrvn GsLavs-RA lgdyd P2CB_RAT : 354- 361: nlppg GgLagk-RN vieav P2C_LEICH : 172- 179: nnrvd GsLavs-RA fgdre P2C_YEAST : 183- 191: rveqa GgLimksRV ngmla PDP_BOVIN : 345- 352: qdrll GlLmpf-RA fgdvk PDP_BOVIN : 460- 467: lgqmh GlLter-RA kmssv YBF6_YEAST : 184- 191: mdrvn GnLals-RA igdfe YBX5_YEAST : 242- 249: lgrvg GvLals-RA fsdfq YER9_YEAST : 184- 191: mdrvn GnLals-RA igdfe S 19: 13.4232 16( 15) D-G-x(1,2)-D-x(2)-[ADGNSTV] Occurences: 16(15) KAPP_ARATH : 522- 529: avlas DGlwDvvS pkkav P2C1_SCHPO : 275- 282: fiiac DGlwDvvS dqeav P2C2_SCHPO : 233- 240: lilac DGiwDckS sqqvv P2C3_SCHPO : 230- 237: vvlac DGiwDckT sqqvi P2C3_SCHPO : 349- 355: klngs DGy-DkdA nensk P2CA_HUMAN : 239- 246: iilac DGiwDvmG neelc P2CA_RABIT : 239- 246: iilac DGiwDvmG neelc P2CA_RAT : 239- 246: iilac DGiwDvmG neelc P2CB_MOUSE : 243- 250: vvlac DGiwDvmS neelc P2CB_RAT : 243- 250: vvlac DGiwDvmS neelc P2C_LEICH : 276- 282: ivqfk DGs-DyaA ephtt P2C_YEAST : 233- 240: lilac DGlwDviD dqdac PDP_BOVIN : 280- 286: cvahv DGv-DlhV antgd YBF6_YEAST : 234- 241: vilac DGiwDclT sqecv YBX5_YEAST : 310- 317: lvlac DGiwDiyN nkqli YER9_YEAST : 234- 241: vilac DGiwDclT sqdcv T 20: 12.5102 16( 15) N-x-G-D Occurences: 16(15) KAPP_ARATH : 429- 432: faqca NlGD sacvi P2C1_SCHPO : 188- 191: vlyta NaGD arivl P2C1_SCHPO : 326- 329: vnltr NpGD lddsg P2C2_SCHPO : 138- 141: viyca NaGD srtvl P2C3_SCHPO : 136- 139: klyca NaGD srtvl P2CA_HUMAN : 143- 146: htyfi NcGD srgll P2CA_RABIT : 143- 146: htyfi NcGD srgll P2CA_RAT : 143- 146: htyfi NcGD srgll P2CB_MOUSE : 148- 151: hmyfi NcGD sravl P2CB_RAT : 148- 151: hiyfi NcGD sravl P2C_LEICH : 126- 129: hlqvg NvGD srvva P2C_YEAST : 147- 150: klyta NvGD srivl PDP_BOVIN : 288- 291: dlhva NtGD sraml YBF6_YEAST : 138- 141: llica NsGD srtvl YBX5_YEAST : 195- 198: slyva NcGD srcil YER9_YEAST : 138- 141: llvcg NaGD srtvl Number of patterns evaluated by Pratt:3933 Total running time: 5 seconds