------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file PORPHOBILINOGEN_DEAM PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PORPHOBILINOGEN_DEAM.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HEM3_BACSU 314 HEM3_CHLVI 43 HEM3_ECOLI 313 HEM3_ERWCH 89 HEM3_EUGGR 480 HEM3_HUMAN 361 HEM3_MOUSE 361 HEM3_RAT 344 HEM3_YEAST 327 HEM3_YERIN 183 HEM3_YERPE 183 Pratt run started at Thu Feb 6 20:49:46 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 11( 11) L-x(3)-G-x(3)-L-x(2)-K-x(2)-E-x(2)-L 2: 24.5203 11( 11) L-x(2,3)-G-x(3)-L-x(2)-K-x(2)-E-x(2)-L 3: 24.0203 11( 11) L-x(1,3)-G-x(3)-L-x(2)-K-x(2)-E-x(2)-L 4: 20.8503 11( 11) G-x(3)-L-x(2)-K-x(2)-E-x(2)-L 5: 16.6802 11( 11) L-x(2)-K-x(2)-E-x(2)-L 6: 15.6802 12( 11) L-x(0,1)-K-x(5)-L-x(0,1)-F 7: 15.6802 13( 11) L-x(2,3)-G-x(2,3)-G-x(3)-K 8: 15.6802 13( 11) D-x(2,3)-L-x(3)-G-x(2,3)-L 9: 15.6802 11( 11) K-x(0,1)-L-x(1,2)-K-x(5)-L 10: 15.1802 11( 11) K-x(2,3)-K-x-L-x(1,3)-E 11: 15.1802 17( 11) K-x(5)-L-x(0,2)-K-x(1,2)-E 12: 15.1802 12( 11) L-x(1,2)-K-x(5)-L-x(3,5)-D 13: 15.1802 12( 11) D-x-P-x(0,2)-L-x(2,3)-G 14: 14.6802 17( 11) L-x(3,5)-L-x(3)-G-x(2,4)-L 15: 14.6802 12( 11) D-x(0,2)-V-x(2,4)-D-x-P 16: 12.5102 11( 11) K-x-L-x(3)-E 17: 12.5102 14( 11) K-x(2)-E-x(2)-L 18: 12.5102 11( 11) L-x(4)-L-x(3)-G 19: 12.0102 12( 11) G-x(2,3)-G-x(3)-K 20: 12.0102 12( 11) K-x(5)-L-x(0,1)-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.3561 11( 11) L-x(3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] B 2: 50.8561 11( 11) L-x(2,3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] C 3: 50.3561 11( 11) L-x(1,3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] D 4: 47.1860 11( 11) G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] E 5: 37.7721 11( 11) L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] F 6: 32.9800 11( 11) K-x(0,1)-L-x(1,2)-K-[ET]-x-[EG]-x(2)-L-x(2)-[DEGNS]-x(2)-[DS]-x(2)-[GLV]-[DH] G 7: 29.0293 11( 11) L-[AL]-[ADSTV]-[AST]-[GP]-L-x-[KR]-[ILMV]-G H 8: 28.8488 13( 11) L-x(2,3)-G-x(2,3)-G-[AGLV]-[FI]-[CTV]-K-[DER]-x-[DEN] I 9: 27.2747 11( 11) D-x(2,3)-L-x(3)-G-x(2,3)-L-x-[GTV]-x-[DET]-x-[ER]-x(2)-[LP] J 10: 26.9991 11( 11) K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] K 11: 25.8075 11( 11) L-x(1,2)-K-[DE]-[IL]-E-x(2)-L-x(3,5)-D L 12: 25.1788 12( 11) G-x(2,3)-G-[AGLV]-[FI]-[CTV]-K-[DER]-x-[DEN] M 13: 23.6580 12( 11) D-x-P-x(0,2)-L-x(2,3)-G-x(2)-[GIL]-[GL]-x(3)-[DEK] N 14: 21.5740 11( 11) K-x-L-x-[ATV]-x-E-[IL]-[DE] O 15: 18.9088 11( 11) L-x(0,1)-K-x(5)-L-x(0,1)-F-x(4)-[EG] P 16: 18.4668 11( 11) K-x(2,3)-K-x-L-x(1,3)-E-[IL] Q 17: 15.2387 11( 11) K-x(5)-L-x(0,1)-F-x(4)-[EG] R 18: 15.1802 17( 11) K-x(5)-L-x(0,2)-K-x(1,2)-E S 19: 14.6802 17( 11) L-x(3,5)-L-x(3)-G-x(2,4)-L T 20: 14.6802 12( 11) D-x(0,2)-V-x(2,4)-D-x-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.3561 11( 11) L-x(3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 52- 75: ivdvt LskvGGkGLFVKEIEqaLlnEEiD mavhs HEM3_CHLVI : 20- 43: lldsp LskiGDmGLFTKDIEkhLlaGEiD HEM3_ECOLI : 53- 76: ildtp LakvGGkGLFVKELEvaLleNRaD iavhs HEM3_ERWCH : 53- 76: lldtp LakvGGkGLFVKELElaLleNRaD iavhs HEM3_EUGGR : 199- 222: ildsp LakvGGkGLFVKELEtaLleNRsD iavhs HEM3_HUMAN : 68- 91: ildta LskiGEkSLFTKELEhaLekNEvD lvvhs HEM3_MOUSE : 68- 91: ivdta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_RAT : 51- 74: ildta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_YEAST : 53- 76: iqfkp LysfGGkALWTKELEdhLyhDDpS kkldl HEM3_YERIN : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs HEM3_YERPE : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs B 2: 50.8561 11( 11) L-x(2,3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 52- 75: ivdvt LskvGGkGLFVKEIEqaLlnEEiD mavhs HEM3_CHLVI : 20- 43: lldsp LskiGDmGLFTKDIEkhLlaGEiD HEM3_ECOLI : 53- 76: ildtp LakvGGkGLFVKELEvaLleNRaD iavhs HEM3_ERWCH : 53- 76: lldtp LakvGGkGLFVKELElaLleNRaD iavhs HEM3_EUGGR : 199- 222: ildsp LakvGGkGLFVKELEtaLleNRsD iavhs HEM3_HUMAN : 68- 91: ildta LskiGEkSLFTKELEhaLekNEvD lvvhs HEM3_MOUSE : 68- 91: ivdta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_RAT : 51- 74: ildta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_YEAST : 53- 76: iqfkp LysfGGkALWTKELEdhLyhDDpS kkldl HEM3_YERIN : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs HEM3_YERPE : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs C 3: 50.3561 11( 11) L-x(1,3)-G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 52- 75: ivdvt LskvGGkGLFVKEIEqaLlnEEiD mavhs HEM3_CHLVI : 20- 43: lldsp LskiGDmGLFTKDIEkhLlaGEiD HEM3_ECOLI : 53- 76: ildtp LakvGGkGLFVKELEvaLleNRaD iavhs HEM3_ERWCH : 53- 76: lldtp LakvGGkGLFVKELElaLleNRaD iavhs HEM3_EUGGR : 199- 222: ildsp LakvGGkGLFVKELEtaLleNRsD iavhs HEM3_HUMAN : 68- 91: ildta LskiGEkSLFTKELEhaLekNEvD lvvhs HEM3_MOUSE : 68- 91: ivdta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_RAT : 51- 74: ildta LskiGEkSLFTKELEnaLekNEvD lvvhs HEM3_YEAST : 53- 76: iqfkp LysfGGkALWTKELEdhLyhDDpS kkldl HEM3_YERIN : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs HEM3_YERPE : 53- 76: ildtp LakvGGkGLFVKELElaLldGRaD iavhs D 4: 47.1860 11( 11) G-[DEG]-x-[AGS]-L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 56- 75: tlskv GGkGLFVKEIEqaLlnEEiD mavhs HEM3_CHLVI : 24- 43: plski GDmGLFTKDIEkhLlaGEiD HEM3_ECOLI : 57- 76: plakv GGkGLFVKELEvaLleNRaD iavhs HEM3_ERWCH : 57- 76: plakv GGkGLFVKELElaLleNRaD iavhs HEM3_EUGGR : 203- 222: plakv GGkGLFVKELEtaLleNRsD iavhs HEM3_HUMAN : 72- 91: alski GEkSLFTKELEhaLekNEvD lvvhs HEM3_MOUSE : 72- 91: alski GEkSLFTKELEnaLekNEvD lvvhs HEM3_RAT : 55- 74: alski GEkSLFTKELEnaLekNEvD lvvhs HEM3_YEAST : 57- 76: plysf GGkALWTKELEdhLyhDDpS kkldl HEM3_YERIN : 57- 76: plakv GGkGLFVKELElaLldGRaD iavhs HEM3_YERPE : 57- 76: plakv GGkGLFVKELElaLldGRaD iavhs E 5: 37.7721 11( 11) L-[FW]-[TV]-K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 60- 75: vggkg LFVKEIEqaLlnEEiD mavhs HEM3_CHLVI : 28- 43: igdmg LFTKDIEkhLlaGEiD HEM3_ECOLI : 61- 76: vggkg LFVKELEvaLleNRaD iavhs HEM3_ERWCH : 61- 76: vggkg LFVKELElaLleNRaD iavhs HEM3_EUGGR : 207- 222: vggkg LFVKELEtaLleNRsD iavhs HEM3_HUMAN : 76- 91: igeks LFTKELEhaLekNEvD lvvhs HEM3_MOUSE : 76- 91: igeks LFTKELEnaLekNEvD lvvhs HEM3_RAT : 59- 74: igeks LFTKELEnaLekNEvD lvvhs HEM3_YEAST : 61- 76: fggka LWTKELEdhLyhDDpS kkldl HEM3_YERIN : 61- 76: vggkg LFVKELElaLldGRaD iavhs HEM3_YERPE : 61- 76: vggkg LFVKELElaLldGRaD iavhs F 6: 32.9800 11( 11) K-x(0,1)-L-x(1,2)-K-[ET]-x-[EG]-x(2)-L-x(2)-[DEGNS]-x(2)-[DS]-x(2)-[GLV]-[DH] Occurences: 11(11) HEM3_BACSU : 58- 79: skvgg KgLfvKEiEqaLlnEeiDmaVH smkdm HEM3_CHLVI : 6- 25: mnisl K-Lv-KTtGdvLldSplSkiGD mglft HEM3_ECOLI : 59- 80: akvgg KgLfvKElEvaLleNraDiaVH smkdv HEM3_ERWCH : 59- 80: akvgg KgLfvKElElaLleNraDiaVH smkdv HEM3_EUGGR : 205- 226: akvgg KgLfvKElEtaLleNrsDiaVH stkdv HEM3_HUMAN : 74- 95: skige KsLftKElEhaLekNevDlvVH slkdl HEM3_MOUSE : 74- 95: skige KsLftKElEnaLekNevDlvVH slkdv HEM3_RAT : 57- 78: skige KsLftKElEnaLekNevDlvVH slkdv HEM3_YEAST : 59- 80: ysfgg KaLwtKElEdhLyhDdpSkkLD livhs HEM3_YERIN : 59- 80: akvgg KgLfvKElElaLldGraDiaVH smkdv HEM3_YERPE : 59- 80: akvgg KgLfvKElElaLldGraDiaVH smkdv G 7: 29.0293 11( 11) L-[AL]-[ADSTV]-[AST]-[GP]-L-x-[KR]-[ILMV]-G Occurences: 11(11) HEM3_BACSU : 168- 177: ydaii LAAAGLsRMG wkqdv HEM3_CHLVI : 15- 24: ttgdv LLDSPLsKIG dmglf HEM3_ECOLI : 169- 178: ydaii LAVAGLkRLG lesri HEM3_ERWCH : 48- 57: trgxl LLDTPLaKVG gkglf HEM3_EUGGR : 318- 327: ydaii LAAAGLkRLG fsdrv HEM3_HUMAN : 188- 197: fsaii LATAGLqRMG whnrv HEM3_MOUSE : 188- 197: fsaiv LAVAGLqRMG wqnrv HEM3_RAT : 171- 180: fsaii LAVAGLqRMG wqnrv HEM3_YEAST : 178- 187: yqcii LASAGLmRMG lenri HEM3_YERIN : 169- 178: yhaii LAVAGLnRLG lasri HEM3_YERPE : 169- 178: yqaii LAVAGLkRLG lgkpn H 8: 28.8488 13( 11) L-x(2,3)-G-x(2,3)-G-[AGLV]-[FI]-[CTV]-K-[DER]-x-[DEN] Occurences: 13(11) HEM3_BACSU : 52- 66: ivdvt LskvGgk-GLFVKEiE qalln HEM3_CHLVI : 20- 34: lldsp LskiGdm-GLFTKDiE khlla HEM3_ECOLI : 53- 67: ildtp LakvGgk-GLFVKElE valle HEM3_ERWCH : 53- 67: lldtp LakvGgk-GLFVKElE lalle HEM3_EUGGR : 199- 213: ildsp LakvGgk-GLFVKElE talle HEM3_EUGGR : 235- 249: dvpme Lpe-GlvlGVICKRhD pcdai HEM3_HUMAN : 104- 118: dlptv Lpp-GftiGAICKReN phdav HEM3_MOUSE : 104- 118: dvpti Lpp-GftiGAICKRqN pcdav HEM3_RAT : 87- 101: dvpti Lpp-GftiGAICKReN pcdav HEM3_YEAST : 92- 107: kdmpt LlpeGfelGGITKRvD ptdcl HEM3_YEAST : 93- 107: dmptl Lpe-GfelGGITKRvD ptdcl HEM3_YERIN : 53- 67: ildtp LakvGgk-GLFVKElE lalld HEM3_YERPE : 53- 67: ildtp LakvGgk-GLFVKElE lalld I 9: 27.2747 11( 11) D-x(2,3)-L-x(3)-G-x(2,3)-L-x-[GTV]-x-[DET]-x-[ER]-x(2)-[LP] Occurences: 11(11) HEM3_BACSU : 49- 69: gdriv Dvt-LskvGgkgLfVkEiEqaL lneei HEM3_CHLVI : 17- 37: gdvll Dsp-LskiGdmgLfTkDiEkhL lagei HEM3_ECOLI : 50- 70: gdvil Dtp-LakvGgkgLfVkElEvaL lenra HEM3_ERWCH : 50- 70: gxlll Dtp-LakvGgkgLfVkElElaL lenra HEM3_EUGGR : 196- 216: gdkil Dsp-LakvGgkgLfVkElEtaL lenrs HEM3_HUMAN : 65- 85: gdkil Dta-LskiGeksLfTkElEhaL eknev HEM3_MOUSE : 65- 85: gdkiv Dta-LskiGeksLfTkElEnaL eknev HEM3_RAT : 48- 68: gdkil Dta-LskiGeksLfTkElEnaL eknev HEM3_YEAST : 88- 108: vhslk DmptLlpeGfe-LgGiTkRvdP tdclv HEM3_YERIN : 50- 70: gdiil Dtp-LakvGgkgLfVkElElaL ldgra HEM3_YERPE : 50- 70: gdiil Dtp-LakvGgkgLfVkElElaL ldgra J 10: 26.9991 11( 11) K-[DE]-[IL]-E-x(2)-L-x(2)-[DEGN]-[DER]-x-[DS] Occurences: 11(11) HEM3_BACSU : 63- 75: kglfv KEIEqaLlnEEiD mavhs HEM3_CHLVI : 31- 43: mglft KDIEkhLlaGEiD HEM3_ECOLI : 64- 76: kglfv KELEvaLleNRaD iavhs HEM3_ERWCH : 64- 76: kglfv KELElaLleNRaD iavhs HEM3_EUGGR : 210- 222: kglfv KELEtaLleNRsD iavhs HEM3_HUMAN : 79- 91: kslft KELEhaLekNEvD lvvhs HEM3_MOUSE : 79- 91: kslft KELEnaLekNEvD lvvhs HEM3_RAT : 62- 74: kslft KELEnaLekNEvD lvvhs HEM3_YEAST : 64- 76: kalwt KELEdhLyhDDpS kkldl HEM3_YERIN : 64- 76: kglfv KELElaLldGRaD iavhs HEM3_YERPE : 64- 76: kglfv KELElaLldGRaD iavhs K 11: 25.8075 11( 11) L-x(1,2)-K-[DE]-[IL]-E-x(2)-L-x(3,5)-D Occurences: 11(11) HEM3_BACSU : 60- 75: vggkg LfvKEIEqaLlneeiD mavhs HEM3_CHLVI : 28- 43: igdmg LftKDIEkhLlageiD HEM3_ECOLI : 61- 76: vggkg LfvKELEvaLlenraD iavhs HEM3_ERWCH : 61- 76: vggkg LfvKELElaLlenraD iavhs HEM3_EUGGR : 207- 222: vggkg LfvKELEtaLlenrsD iavhs HEM3_HUMAN : 76- 91: igeks LftKELEhaLeknevD lvvhs HEM3_MOUSE : 76- 91: igeks LftKELEnaLeknevD lvvhs HEM3_RAT : 59- 74: igeks LftKELEnaLeknevD lvvhs HEM3_YEAST : 61- 74: fggka LwtKELEdhLyhd--D pskkl HEM3_YERIN : 61- 76: vggkg LfvKELElaLldgraD iavhs HEM3_YERPE : 61- 76: vggkg LfvKELElaLldgraD iavhs L 12: 25.1788 12( 11) G-x(2,3)-G-[AGLV]-[FI]-[CTV]-K-[DER]-x-[DEN] Occurences: 12(11) HEM3_BACSU : 56- 66: tlskv Ggk-GLFVKEiE qalln HEM3_CHLVI : 24- 34: plski Gdm-GLFTKDiE khlla HEM3_ECOLI : 57- 67: plakv Ggk-GLFVKElE valle HEM3_ERWCH : 57- 67: plakv Ggk-GLFVKElE lalle HEM3_EUGGR : 203- 213: plakv Ggk-GLFVKElE talle HEM3_EUGGR : 238- 249: melpe GlvlGVICKRhD pcdai HEM3_HUMAN : 107- 118: tvlpp GftiGAICKReN phdav HEM3_MOUSE : 107- 118: tilpp GftiGAICKRqN pcdav HEM3_RAT : 90- 101: tilpp GftiGAICKReN pcdav HEM3_YEAST : 96- 107: tllpe GfelGGITKRvD ptdcl HEM3_YERIN : 57- 67: plakv Ggk-GLFVKElE lalld HEM3_YERPE : 57- 67: plakv Ggk-GLFVKElE lalld M 13: 23.6580 12( 11) D-x-P-x(0,2)-L-x(2,3)-G-x(2)-[GIL]-[GL]-x(3)-[DEK] Occurences: 12(11) HEM3_BACSU : 83- 99: vhsmk DmPavLpe-GlvIGcipE redpr HEM3_CHLVI : 17- 32: gdvll DsP--LskiGdmGLftkD iekhl HEM3_ECOLI : 50- 65: gdvil DtP--LakvGgkGLfvkE leval HEM3_ERWCH : 50- 65: gxlll DtP--LakvGgkGLfvkE lelal HEM3_EUGGR : 196- 211: gdkil DsP--LakvGgkGLfvkE letal HEM3_EUGGR : 230- 246: vhstk DvPmeLpe-GlvLGvicK rhdpc HEM3_HUMAN : 99- 115: vhslk DlPtvLpp-GftIGaicK renph HEM3_MOUSE : 99- 115: vhslk DvPtiLpp-GftIGaicK rqnpc HEM3_RAT : 82- 98: vhslk DvPtiLpp-GftIGaicK renpc HEM3_YEAST : 88- 104: vhslk DmPtlLpe-GfeLGgitK rvdpt HEM3_YEAST : 88- 104: vhslk DmPt-LlpeGfeLGgitK rvdpt HEM3_YERIN : 50- 65: gdiil DtP--LakvGgkGLfvkE lelal HEM3_YERPE : 50- 65: gdiil DtP--LakvGgkGLfvkE lelal N 14: 21.5740 11( 11) K-x-L-x-[ATV]-x-E-[IL]-[DE] Occurences: 11(11) HEM3_BACSU : 58- 66: skvgg KgLfVkEIE qalln HEM3_CHLVI : 35- 43: tkdie KhLlAgEID HEM3_ECOLI : 59- 67: akvgg KgLfVkELE valle HEM3_ERWCH : 59- 67: akvgg KgLfVkELE lalle HEM3_EUGGR : 205- 213: akvgg KgLfVkELE talle HEM3_HUMAN : 74- 82: skige KsLfTkELE halek HEM3_MOUSE : 74- 82: skige KsLfTkELE nalek HEM3_RAT : 57- 65: skige KsLfTkELE nalek HEM3_YEAST : 59- 67: ysfgg KaLwTkELE dhlyh HEM3_YERIN : 59- 67: akvgg KgLfVkELE lalld HEM3_YERPE : 59- 67: akvgg KgLfVkELE lalld O 15: 18.9088 11( 11) L-x(0,1)-K-x(5)-L-x(0,1)-F-x(4)-[EG] Occurences: 11(11) HEM3_BACSU : 52- 66: ivdvt LsKvggkgL-FvkeiE qalln HEM3_CHLVI : 20- 34: lldsp LsKigdmgL-FtkdiE khlla HEM3_ECOLI : 53- 67: ildtp LaKvggkgL-FvkelE valle HEM3_ERWCH : 53- 67: lldtp LaKvggkgL-FvkelE lalle HEM3_EUGGR : 199- 213: ildsp LaKvggkgL-FvkelE talle HEM3_HUMAN : 68- 82: ildta LsKigeksL-FtkelE halek HEM3_MOUSE : 68- 82: ivdta LsKigeksL-FtkelE nalek HEM3_RAT : 51- 65: ildta LsKigeksL-FtkelE nalek HEM3_YEAST : 143- 157: rrsaq L-KrkyphLkFesvrG niqtr HEM3_YERIN : 53- 67: ildtp LaKvggkgL-FvkelE lalld HEM3_YERPE : 53- 67: ildtp LaKvggkgL-FvkelE lalld P 16: 18.4668 11( 11) K-x(2,3)-K-x-L-x(1,3)-E-[IL] Occurences: 11(11) HEM3_BACSU : 54- 65: dvtls KvggKgLfvkEI eqall HEM3_CHLVI : 31- 42: mglft KdieKhLlagEI d HEM3_ECOLI : 55- 66: dtpla KvggKgLfvkEL evall HEM3_ERWCH : 55- 66: dtpla KvggKgLfvkEL elall HEM3_EUGGR : 201- 212: dspla KvggKgLfvkEL etall HEM3_HUMAN : 70- 81: dtals KigeKsLftkEL ehale HEM3_MOUSE : 70- 81: dtals KigeKsLftkEL enale HEM3_RAT : 53- 64: dtals KigeKsLftkEL enale HEM3_YEAST : 220- 228: rkgdt Kmm-KiLd--EI cdlna HEM3_YERIN : 55- 66: dtpla KvggKgLfvkEL elall HEM3_YERPE : 55- 66: dtpla KvggKgLfvkEL elall Q 17: 15.2387 11( 11) K-x(5)-L-x(0,1)-F-x(4)-[EG] Occurences: 11(11) HEM3_BACSU : 54- 66: dvtls KvggkgL-FvkeiE qalln HEM3_CHLVI : 22- 34: dspls KigdmgL-FtkdiE khlla HEM3_ECOLI : 55- 67: dtpla KvggkgL-FvkelE valle HEM3_ERWCH : 55- 67: dtpla KvggkgL-FvkelE lalle HEM3_EUGGR : 201- 213: dspla KvggkgL-FvkelE talle HEM3_HUMAN : 70- 82: dtals KigeksL-FtkelE halek HEM3_MOUSE : 70- 82: dtals KigeksL-FtkelE nalek HEM3_RAT : 53- 65: dtals KigeksL-FtkelE nalek HEM3_YEAST : 144- 157: rsaql KrkyphLkFesvrG niqtr HEM3_YERIN : 55- 67: dtpla KvggkgL-FvkelE lalld HEM3_YERPE : 55- 67: dtpla KvggkgL-FvkelE lalld R 18: 15.1802 17( 11) K-x(5)-L-x(0,2)-K-x(1,2)-E Occurences: 17(11) HEM3_BACSU : 54- 66: dvtls KvggkgLfvKeiE qalln HEM3_CHLVI : 22- 34: dspls KigdmgLftKdiE khlla HEM3_ECOLI : 55- 67: dtpla KvggkgLfvKelE valle HEM3_ERWCH : 55- 67: dtpla KvggkgLfvKelE lalle HEM3_EUGGR : 201- 213: dspla KvggkgLfvKelE talle HEM3_HUMAN : 62- 73: sttgd KildtaLs-KigE kslft HEM3_HUMAN : 70- 82: dtals KigeksLftKelE halek HEM3_HUMAN : 79- 89: kslft KelehaLe-Kn-E vdlvv HEM3_MOUSE : 62- 73: sttgd KivdtaLs-KigE kslft HEM3_MOUSE : 70- 82: dtals KigeksLftKelE nalek HEM3_MOUSE : 79- 89: kslft KelenaLe-Kn-E vdlvv HEM3_RAT : 45- 56: sttgd KildtaLs-KigE kslft HEM3_RAT : 53- 65: dtals KigeksLftKelE nalek HEM3_RAT : 62- 72: kslft KelenaLe-Kn-E vdlvv HEM3_YEAST : 144- 153: rsaql KrkyphL--Kf-E svrgn HEM3_YERIN : 55- 67: dtpla KvggkgLfvKelE lalld HEM3_YERPE : 55- 67: dtpla KvggkgLfvKelE lalld S 19: 14.6802 17( 11) L-x(3,5)-L-x(3)-G-x(2,4)-L Occurences: 17(11) HEM3_BACSU : 187- 201: vvtef LepercLpavGqga-L aiecr HEM3_CHLVI : 15- 28: ttgdv Lldsp-LskiGdmg-L ftkdi HEM3_CHLVI : 16- 28: tgdvl Ldsp--LskiGdmg-L ftkdi HEM3_ECOLI : 49- 61: rgdvi Ldtp--LakvGgkg-L fvkel HEM3_ECOLI : 290- 303: qmgis Laee--LlnnGareiL aevyn HEM3_ERWCH : 47- 61: vtrgx LlldtpLakvGgkg-L fvkel HEM3_ERWCH : 48- 61: trgxl Lldtp-LakvGgkg-L fvkel HEM3_ERWCH : 49- 61: rgxll Ldtp--LakvGgkg-L fvkel HEM3_EUGGR : 195- 207: rgdki Ldsp--LakvGgkg-L fvkel HEM3_HUMAN : 64- 76: tgdki Ldta--LskiGeks-L ftkel HEM3_HUMAN : 338- 351: nlgis Lanl--LlskGakniL dvarq HEM3_MOUSE : 338- 351: nlgis Lasl--LlnkGakniL dvarq HEM3_RAT : 47- 59: tgdki Ldta--LskiGeks-L ftkel HEM3_RAT : 321- 334: nlgis Lasl--LlnkGakniL dvarq HEM3_YEAST : 86- 99: livhs LkdmptLlpeGfe--L ggitk HEM3_YERIN : 49- 61: rgdii Ldtp--LakvGgkg-L fvkel HEM3_YERPE : 49- 61: rgdii Ldtp--LakvGgkg-L fvkel T 20: 14.6802 12( 11) D-x(0,2)-V-x(2,4)-D-x-P Occurences: 12(11) HEM3_BACSU : 75- 85: lneei DmaVhsmkDmP avlpe HEM3_CHLVI : 13- 19: vkttg D--Vll--DsP lskig HEM3_ECOLI : 46- 52: mvtrg D--Vil--DtP lakvg HEM3_ECOLI : 76- 86: lenra DiaVhsmkDvP vefpq HEM3_ERWCH : 76- 86: lenra DiaVhsmkDvP vef HEM3_EUGGR : 222- 232: lenrs DiaVhstkDvP melpe HEM3_HUMAN : 91- 101: eknev DlvVhslkDlP tvlpp HEM3_MOUSE : 91- 101: eknev DlvVhslkDvP tilpp HEM3_RAT : 74- 84: eknev DlvVhslkDvP tilpp HEM3_YEAST : 80- 90: pskkl DliVhslkDmP tllpe HEM3_YERIN : 76- 86: ldgra DiaVhsmkDvP vafpe HEM3_YERPE : 76- 86: ldgra DiaVhsmkDvP iafpe Number of patterns evaluated by Pratt:700 Total running time: 1 seconds