------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file PMI_I_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PMI_I_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MANA_BACSU 316 MANA_CAEEL 411 MANA_CANAL 440 MANA_ECOLI 391 MANA_EMENI 461 MANA_HUMAN 422 MANA_SALTY 391 MANA_YEAST 428 Pratt run started at Thu Feb 6 20:49:27 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 8( 8) H-A-x(3)-G-x(3,4)-E-x(4)-S-D-x(3)-R 2: 24.5203 8( 8) A-x(3)-G-x(3,4)-E-x(4)-S-D-x(3)-R 3: 23.5203 8( 8) Y-x(1,3)-D-x-N-x(2)-P-x(0,1)-E-x(3)-A 4: 23.0203 8( 8) Y-x-D-x(3,5)-E-x(5)-T-x(1,3)-F-x(5)-F 5: 20.3503 8( 8) S-x(3,4)-R-x-G-x-T-x-K 6: 20.3503 8( 8) D-x-N-x(2)-P-x(0,1)-E-x(3)-A 7: 20.3503 8( 8) G-x(3,4)-E-x(4)-S-D-x(3)-R 8: 19.8503 8( 8) T-x(0,1)-P-x(0,1)-K-x(2)-D-x(3)-L 9: 19.3503 8( 8) D-x-N-x(1,3)-E-x(3)-A-x(3,4)-F 10: 19.3503 8( 8) Y-x(1,2)-D-x-N-x(1,3)-E-x(3)-A 11: 19.3503 8( 8) G-x(3)-E-x(2,3)-A-x(3)-N-x(1,3)-A 12: 19.3503 8( 8) N-x(2,3)-A-x(0,2)-T-x(4)-D-x(3)-L 13: 19.3503 9( 8) L-x(2,4)-L-x(2)-G-x(0,1)-A-x(2)-L 14: 18.8503 12( 8) D-x(3,5)-E-x(5)-T-x(1,3)-F-x(5)-F 15: 18.8503 8( 8) A-x(3)-N-x(1,3)-A-x(0,2)-T-x(4)-D 16: 16.6802 8( 8) R-x-G-x-T-x-K 17: 16.6802 8( 8) E-x(4)-S-D-x(3)-R 18: 16.6802 8( 8) S-I-x(2)-H-P 19: 16.1802 8( 8) F-x(0,1)-L-x(4)-P-x(5)-G 20: 16.1802 8( 8) P-x(0,1)-K-x(2)-D-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 78.5940 9( 8) L-x(2,4)-L-x(2)-G-x(0,1)-A-x-[FV]-L-x-[APT]-x(4)-[AD]-x(4)-[DV]-x(3)-[CDV]-x-[AL]-[ACDNS]-S-[DN]-[GN]-[STV]-[ILPV]-R-[AE]-[GL]-x(2)-[AP]-K-x(2)-[DN]-[AIV] B 2: 63.8297 8( 8) H-A-x(3)-G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] C 3: 59.6596 8( 8) A-x(3)-G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] D 4: 55.4896 8( 8) G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] E 5: 51.8195 8( 8) E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] F 6: 51.3123 8( 8) Y-x(1,2)-D-x-N-x(1,3)-E-x(2)-[FIM]-A-x-[DT]-[DEP]-x(2)-[AGL]-[FILM]-[CNS]-[AGS]-[FV]-x-[EPQ]-x-[ADEQS]-[DEGQ]-[IL] G 7: 47.7938 8( 8) Y-x(1,3)-D-[ADPS]-N-x(2)-P-x(0,1)-E-[ILM]-x-[FI]-A-x-[AT]-x(3)-[AGL]-x-[CNSV]-[AGP]-[FH]-x-[DEPQ] H 8: 44.6237 8( 8) D-[ADPS]-N-x(2)-P-x(0,1)-E-[ILM]-x-[FI]-A-x-[AT]-x(3)-[AGL]-x-[CNSV]-[AGP]-[FH]-x-[DEPQ] I 9: 40.3043 8( 8) D-x-N-x(1,3)-E-x(2)-[FIM]-A-x(3,4)-F-x-[AGIL]-x-[CNS]-[AGV]-[FI]-[EKR]-x(2)-[ADEGQS]-x-[IL] J 10: 39.1881 8( 8) S-x(3,4)-R-x-G-[FIL]-T-[IP]-K-x(2)-[DV]-x(2)-[ENST]-x(2)-[AES]-x(3)-[FWY]-[DEST] K 11: 37.3467 8( 8) G-[DSV]-x(2)-E-x(2,3)-A-x-[AS]-[DV]-N-x(1,3)-A-[GT]-[FLV]-[PT] L 12: 36.2841 8( 8) A-x-[AS]-[DV]-N-x(1,3)-A-x(0,2)-T-[PV]-x-[FHY]-x-D-[GIV]-x(4)-[AES] M 13: 35.5180 8( 8) R-x-G-[FIL]-T-[IP]-K-x(2)-[DV]-x(2)-[ENST]-x(2)-[AES]-x(3)-[FWY]-[DEST] N 14: 30.0299 8( 8) N-x(2,3)-A-x(0,2)-T-x-[KR]-x(2)-D-x(3)-L-[CDTV]-[AES]-x-[GLV] O 15: 28.8522 8( 8) Y-x-D-x(3,5)-E-x(3)-[AG]-[ILV]-T-x(1,3)-F-x(5)-F P 16: 27.7620 8( 8) S-I-x-[AIV]-H-P-[DNT]-[DK]-x(2)-[AGS] Q 17: 27.5186 8( 8) T-x(0,1)-P-x(0,1)-K-x(2)-D-x(3)-L-[CPTV]-[AES]-x-[LMV] R 18: 25.2856 8( 8) F-x(0,1)-L-x-[AP]-x(2)-P-x(3)-[IL]-x-G-[DTV] S 19: 24.6822 12( 8) D-x(3,5)-E-x(3)-[AG]-[ILV]-T-x(1,3)-F-x(5)-F T 20: 23.8485 8( 8) P-x(0,1)-K-x(2)-D-x(3)-L-[CPTV]-[AES]-x-[LMV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 78.5940 9( 8) L-x(2,4)-L-x(2)-G-x(0,1)-A-x-[FV]-L-x-[APT]-x(4)-[AD]-x(4)-[DV]-x(3)-[CDV]-x-[AL]-[ACDNS]-S-[DN]-[GN]-[STV]-[ILPV]-R-[AE]-[GL]-x(2)-[AP]-K-x(2)-[DN]-[AIV] Occurences: 9(8) MANA_BACSU : 172- 217: vpsgt Lha--LckG-AlVLeTqqnsDatyrVydyDrLDSNGSPRELhfAKavNA atvph MANA_CAEEL : 235- 283: fapif LnyfkLqpGeAtFLePnmphAylkgDcveCmADSDNTIRAGltPKyiDV eslve MANA_CANAL : 265- 313: cgcll LnhvgLnkGeAmFLqAkdphAyisgDiieCmAASDNVVRAGftPKfkDV knlve MANA_ECOLI : 236- 284: fspll LnvvkLnpGeAmFLfAetphAylqgValeVmANSDNVLRAGltPKyiDI pelva MANA_EMENI : 272- 320: fvfff LnfvrLepGeAmFLkAddihAyisgDiieCmASSDNVVRAGftPKfkDV dtlte MANA_HUMAN : 256- 304: faiyf LnlltLkpGeAmFLeAnvphAylkgDcveCmACSDNTVRAGltPKfiDV ptlce MANA_HUMAN : 258- 304: iyfln Llt--LkpGeAmFLeAnvphAylkgDcveCmACSDNTVRAGltPKfiDV ptlce MANA_SALTY : 236- 284: fspll LnvvkLnpGeAmFLfAetphAylqgValeVmANSDNVLRAGltPKyiDI pelva MANA_YEAST : 261- 309: cgcll LnhcrLnaGeAiFLrAkdphAyisgDimeCmAASDNVVRAGftPKfkDV knlvs B 2: 63.8297 8( 8) H-A-x(3)-G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] Occurences: 8(8) MANA_BACSU : 173- 208: psgtl HAlckGalvlETqQNSDATyRVydyDRldSngSPrE lhfak MANA_CAEEL : 254- 288: epnmp HAylkGdcv-ECmADSDNTiRAgltPKyiDveSLvE mlnyd MANA_CANAL : 284- 318: qakdp HAyisGdii-ECmAASDNVvRAgftPKfkDvkNLvE mltys MANA_ECOLI : 255- 289: faetp HAylqGval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_EMENI : 291- 325: kaddi HAyisGdii-ECmASSDNVvRAgftPKfkDvdTLtE mltys MANA_HUMAN : 275- 309: eanvp HAylkGdcv-ECmACSDNTvRAgltPKfiDvpTLcE mlsyt MANA_SALTY : 255- 289: faetp HAylqGval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_YEAST : 280- 314: rakdp HAyisGdim-ECmAASDNVvRAgftPKfkDvkNLvS mltyt C 3: 59.6596 8( 8) A-x(3)-G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] Occurences: 8(8) MANA_BACSU : 174- 208: sgtlh AlckGalvlETqQNSDATyRVydyDRldSngSPrE lhfak MANA_CAEEL : 255- 288: pnmph AylkGdcv-ECmADSDNTiRAgltPKyiDveSLvE mlnyd MANA_CANAL : 285- 318: akdph AyisGdii-ECmAASDNVvRAgftPKfkDvkNLvE mltys MANA_ECOLI : 256- 289: aetph AylqGval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_EMENI : 292- 325: addih AyisGdii-ECmASSDNVvRAgftPKfkDvdTLtE mltys MANA_HUMAN : 276- 309: anvph AylkGdcv-ECmACSDNTvRAgltPKfiDvpTLcE mlsyt MANA_SALTY : 256- 289: aetph AylqGval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_YEAST : 281- 314: akdph AyisGdim-ECmAASDNVvRAgftPKfkDvkNLvS mltyt D 4: 55.4896 8( 8) G-x(3,4)-E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] Occurences: 8(8) MANA_BACSU : 178- 208: halck GalvlETqQNSDATyRVydyDRldSngSPrE lhfak MANA_CAEEL : 259- 288: haylk Gdcv-ECmADSDNTiRAgltPKyiDveSLvE mlnyd MANA_CANAL : 289- 318: hayis Gdii-ECmAASDNVvRAgftPKfkDvkNLvE mltys MANA_ECOLI : 260- 289: haylq Gval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_EMENI : 296- 325: hayis Gdii-ECmASSDNVvRAgftPKfkDvdTLtE mltys MANA_HUMAN : 280- 309: haylk Gdcv-ECmACSDNTvRAgltPKfiDvpTLcE mlsyt MANA_SALTY : 260- 289: haylq Gval-EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_YEAST : 285- 314: hayis Gdim-ECmAASDNVvRAgftPKfkDvkNLvS mltyt E 5: 51.8195 8( 8) E-[CTV]-x-[AQ]-[ACDNS]-S-D-[AN]-[TV]-x-R-[AV]-x(3)-[DP]-[KR]-x(2)-[DS]-x(2)-[ENST]-[LP]-x-[AES] Occurences: 8(8) MANA_BACSU : 183- 208: galvl ETqQNSDATyRVydyDRldSngSPrE lhfak MANA_CAEEL : 263- 288: kgdcv ECmADSDNTiRAgltPKyiDveSLvE mlnyd MANA_CANAL : 293- 318: sgdii ECmAASDNVvRAgftPKfkDvkNLvE mltys MANA_ECOLI : 264- 289: qgval EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_EMENI : 300- 325: sgdii ECmASSDNVvRAgftPKfkDvdTLtE mltys MANA_HUMAN : 284- 309: kgdcv ECmACSDNTvRAgltPKfiDvpTLcE mlsyt MANA_SALTY : 264- 289: qgval EVmANSDNVlRAgltPKyiDipELvA nvkfe MANA_YEAST : 289- 314: sgdim ECmAASDNVvRAgftPKfkDvkNLvS mltyt F 6: 51.3123 8( 8) Y-x(1,2)-D-x-N-x(1,3)-E-x(2)-[FIM]-A-x-[DT]-[DEP]-x(2)-[AGL]-[FILM]-[CNS]-[AGS]-[FV]-x-[EPQ]-x-[ADEQS]-[DEGQ]-[IL] Occurences: 8(8) MANA_BACSU : 251- 278: eyfsv YkwDiNg--EaeMAqDEsfLICSViEgSGL lkyed MANA_CAEEL : 118- 146: tdpkn Yp-DdNhkpEiaIAlTEfeLLSGFrQhSQI mysei MANA_CANAL : 129- 157: adpkn Yp-DdNhkpEmaIAvTDfeGFCGFkPlDQL aktla MANA_ECOLI : 126- 154: aaern Yk-DpNhkpElvFAlTPflAMNAFrEfSEI vsllq MANA_EMENI : 126- 154: rdprn Yp-DdNhkpEmtIAiTPfeGLCGFrPlAEI vhflk MANA_HUMAN : 128- 156: qapqh Yp-DaNhkpEmaIAlTPfqGLCGFrPvEEI vtflk MANA_SALTY : 126- 154: aaern Yk-DpNhkpElvFAlTPflAMNAFrEfSDI vsllq MANA_YEAST : 127- 155: qdpkn Yp-DdNhkpEmaIAvTDfeGFCGFkPlQEI adelk G 7: 47.7938 8( 8) Y-x(1,3)-D-[ADPS]-N-x(2)-P-x(0,1)-E-[ILM]-x-[FI]-A-x-[AT]-x(3)-[AGL]-x-[CNSV]-[AGP]-[FH]-x-[DEPQ] Occurences: 8(8) MANA_BACSU : 197- 224: yrvyd YdrlDSNgsPrELhFAkAvnaAtVPHvD gyide MANA_CAEEL : 118- 142: tdpkn Yp--DDNhkP-EIaIAlTefeLlSGFrQ hsqim MANA_CANAL : 129- 153: adpkn Yp--DDNhkP-EMaIAvTdfeGfCGFkP ldqla MANA_ECOLI : 126- 150: aaern Yk--DPNhkP-ELvFAlTpflAmNAFrE fseiv MANA_EMENI : 126- 150: rdprn Yp--DDNhkP-EMtIAiTpfeGlCGFrP laeiv MANA_HUMAN : 128- 152: qapqh Yp--DANhkP-EMaIAlTpfqGlCGFrP veeiv MANA_SALTY : 126- 150: aaern Yk--DPNhkP-ELvFAlTpflAmNAFrE fsdiv MANA_YEAST : 127- 151: qdpkn Yp--DDNhkP-EMaIAvTdfeGfCGFkP lqeia H 8: 44.6237 8( 8) D-[ADPS]-N-x(2)-P-x(0,1)-E-[ILM]-x-[FI]-A-x-[AT]-x(3)-[AGL]-x-[CNSV]-[AGP]-[FH]-x-[DEPQ] Occurences: 8(8) MANA_BACSU : 201- 224: dydrl DSNgsPrELhFAkAvnaAtVPHvD gyide MANA_CAEEL : 120- 142: pknyp DDNhkP-EIaIAlTefeLlSGFrQ hsqim MANA_CANAL : 131- 153: pknyp DDNhkP-EMaIAvTdfeGfCGFkP ldqla MANA_ECOLI : 128- 150: ernyk DPNhkP-ELvFAlTpflAmNAFrE fseiv MANA_EMENI : 128- 150: prnyp DDNhkP-EMtIAiTpfeGlCGFrP laeiv MANA_HUMAN : 130- 152: pqhyp DANhkP-EMaIAlTpfqGlCGFrP veeiv MANA_SALTY : 128- 150: ernyk DPNhkP-ELvFAlTpflAmNAFrE fsdiv MANA_YEAST : 129- 151: pknyp DDNhkP-EMaIAvTdfeGfCGFkP lqeia I 9: 40.3043 8( 8) D-x-N-x(1,3)-E-x(2)-[FIM]-A-x(3,4)-F-x-[AGIL]-x-[CNS]-[AGV]-[FI]-[EKR]-x(2)-[ADEGQS]-x-[IL] Occurences: 8(8) MANA_BACSU : 254- 279: svykw DiNg--EaeMAqdesFlIcSVIEgsGlL kyedk MANA_CAEEL : 120- 146: pknyp DdNhkpEiaIAlte-FeLlSGFRqhSqI mysei MANA_CANAL : 131- 157: pknyp DdNhkpEmaIAvtd-FeGfCGFKplDqL aktla MANA_ECOLI : 128- 154: ernyk DpNhkpElvFAltp-FlAmNAFRefSeI vsllq MANA_EMENI : 128- 154: prnyp DdNhkpEmtIAitp-FeGlCGFRplAeI vhflk MANA_HUMAN : 130- 156: pqhyp DaNhkpEmaIAltp-FqGlCGFRpvEeI vtflk MANA_SALTY : 128- 154: ernyk DpNhkpElvFAltp-FlAmNAFRefSdI vsllq MANA_YEAST : 129- 155: pknyp DdNhkpEmaIAvtd-FeGfCGFKplQeI adelk J 10: 39.1881 8( 8) S-x(3,4)-R-x-G-[FIL]-T-[IP]-K-x(2)-[DV]-x(2)-[ENST]-x(2)-[AES]-x(3)-[FWY]-[DEST] Occurences: 8(8) MANA_BACSU : 230- 254: gyide Stes-RkGITIKtfVqgEyfSvykWD ingea MANA_CAEEL : 268- 293: ecmad SdntiRaGLTPKyiDveSlvEmlnYD etllp MANA_CANAL : 298- 323: ecmaa SdnvvRaGFTPKfkDvkNlvEmltYS yesve MANA_ECOLI : 269- 294: evman SdnvlRaGLTPKyiDipElvAnvkFE akpan MANA_EMENI : 305- 330: ecmas SdnvvRaGFTPKfkDvdTltEmltYS yapid MANA_HUMAN : 289- 314: ecmac SdntvRaGLTPKfiDvpTlcEmlsYT psssk MANA_SALTY : 269- 294: evman SdnvlRaGLTPKyiDipElvAnvkFE pkpag MANA_YEAST : 294- 319: ecmaa SdnvvRaGFTPKfkDvkNlvSmltYT ydpve K 11: 37.3467 8( 8) G-[DSV]-x(2)-E-x(2,3)-A-x-[AS]-[DV]-N-x(1,3)-A-[GT]-[FLV]-[PT] Occurences: 8(8) MANA_BACSU : 204- 221: rldsn GSprElhfAkAVNa--ATVP hvdgy MANA_CAEEL : 259- 277: haylk GDcvEcm-AdSDNtirAGLT pkyid MANA_CANAL : 289- 307: hayis GDiiEcm-AaSDNvvrAGFT pkfkd MANA_ECOLI : 260- 278: haylq GValEvm-AnSDNvlrAGLT pkyid MANA_EMENI : 296- 314: hayis GDiiEcm-AsSDNvvrAGFT pkfkd MANA_HUMAN : 280- 298: haylk GDcvEcm-AcSDNtvrAGLT pkfid MANA_SALTY : 260- 278: haylq GValEvm-AnSDNvlrAGLT pkyid MANA_YEAST : 285- 303: hayis GDimEcm-AaSDNvvrAGFT pkfkd L 12: 36.2841 8( 8) A-x-[AS]-[DV]-N-x(1,3)-A-x(0,2)-T-[PV]-x-[FHY]-x-D-[GIV]-x(4)-[AES] Occurences: 8(8) MANA_BACSU : 212- 230: relhf AkAVNa--A--TVpHvDGyideS tesrk MANA_CAEEL : 266- 288: cvecm AdSDNtirAglTPkYiDVeslvE mlnyd MANA_CANAL : 296- 318: iiecm AaSDNvvrAgfTPkFkDVknlvE mltys MANA_ECOLI : 267- 289: alevm AnSDNvlrAglTPkYiDIpelvA nvkfe MANA_EMENI : 303- 325: iiecm AsSDNvvrAgfTPkFkDVdtltE mltys MANA_HUMAN : 287- 309: cvecm AcSDNtvrAglTPkFiDVptlcE mlsyt MANA_SALTY : 267- 289: alevm AnSDNvlrAglTPkYiDIpelvA nvkfe MANA_YEAST : 292- 314: imecm AaSDNvvrAgfTPkFkDVknlvS mltyt M 13: 35.5180 8( 8) R-x-G-[FIL]-T-[IP]-K-x(2)-[DV]-x(2)-[ENST]-x(2)-[AES]-x(3)-[FWY]-[DEST] Occurences: 8(8) MANA_BACSU : 234- 254: estes RkGITIKtfVqgEyfSvykWD ingea MANA_CAEEL : 273- 293: sdnti RaGLTPKyiDveSlvEmlnYD etllp MANA_CANAL : 303- 323: sdnvv RaGFTPKfkDvkNlvEmltYS yesve MANA_ECOLI : 274- 294: sdnvl RaGLTPKyiDipElvAnvkFE akpan MANA_EMENI : 310- 330: sdnvv RaGFTPKfkDvdTltEmltYS yapid MANA_HUMAN : 294- 314: sdntv RaGLTPKfiDvpTlcEmlsYT psssk MANA_SALTY : 274- 294: sdnvl RaGLTPKyiDipElvAnvkFE pkpag MANA_YEAST : 299- 319: sdnvv RaGFTPKfkDvkNlvSmltYT ydpve N 14: 30.0299 8( 8) N-x(2,3)-A-x(0,2)-T-x-[KR]-x(2)-D-x(3)-L-[CDTV]-[AES]-x-[GLV] Occurences: 8(8) MANA_BACSU : 187- 204: letqq Nsd-A--TyRvyDydrLDSnG sprel MANA_CAEEL : 270- 290: madsd NtirAglTpKyiDvesLVEmL nydet MANA_CANAL : 300- 320: maasd NvvrAgfTpKfkDvknLVEmL tysye MANA_ECOLI : 271- 291: mansd NvlrAglTpKyiDipeLVAnV kfeak MANA_EMENI : 307- 327: massd NvvrAgfTpKfkDvdtLTEmL tysya MANA_HUMAN : 291- 311: macsd NtvrAglTpKfiDvptLCEmL sytps MANA_SALTY : 271- 291: mansd NvlrAglTpKyiDipeLVAnV kfepk MANA_YEAST : 296- 316: maasd NvvrAgfTpKfkDvknLVSmL tytyd O 15: 28.8522 8( 8) Y-x-D-x(3,5)-E-x(3)-[AG]-[ILV]-T-x(1,3)-F-x(5)-F Occurences: 8(8) MANA_BACSU : 226- 248: phvdg YiDest--EsrkGITiktFvqgeyF svykw MANA_CAEEL : 118- 140: tdpkn YpDdnhkpEiaiALTe--FellsgF rqhsq MANA_CANAL : 129- 151: adpkn YpDdnhkpEmaiAVTd--FegfcgF kpldq MANA_ECOLI : 126- 148: aaern YkDpnhkpElvfALTp--FlamnaF refse MANA_EMENI : 126- 148: rdprn YpDdnhkpEmtiAITp--FeglcgF rplae MANA_HUMAN : 128- 150: qapqh YpDanhkpEmaiALTp--FqglcgF rpvee MANA_SALTY : 126- 148: aaern YkDpnhkpElvfALTp--FlamnaF refsd MANA_YEAST : 127- 149: qdpkn YpDdnhkpEmaiAVTd--FegfcgF kplqe P 16: 27.7620 8( 8) S-I-x-[AIV]-H-P-[DNT]-[DK]-x(2)-[AGS] Occurences: 8(8) MANA_BACSU : 94- 104: vkedt SIkVHPDDyyA genee MANA_CAEEL : 97- 107: vlgpl SIqIHPTKeqG kllha MANA_CANAL : 108- 118: iekvl SIqAHPDKklG aqlha MANA_ECOLI : 95- 105: aaqpl SIqVHPNKhnS eigfa MANA_EMENI : 105- 115: irkal SIqAHPNKklA ealha MANA_HUMAN : 107- 117: vetpl SIqAHPNKelA eklhl MANA_SALTY : 95- 105: aakpl SIqVHPNKrnS eigfa MANA_YEAST : 106- 116: iekvl SIqAHPDKalG kilha Q 17: 27.5186 8( 8) T-x(0,1)-P-x(0,1)-K-x(2)-D-x(3)-L-[CPTV]-[AES]-x-[LMV] Occurences: 8(8) MANA_BACSU : 285- 300: kyedk TcPlKkgDhfiLPAqM pdfti MANA_CAEEL : 277- 290: iragl T-P-KyiDvesLVEmL nydet MANA_CANAL : 307- 320: vragf T-P-KfkDvknLVEmL tysye MANA_ECOLI : 278- 291: lragl T-P-KyiDipeLVAnV kfeak MANA_EMENI : 314- 327: vragf T-P-KfkDvdtLTEmL tysya MANA_HUMAN : 298- 311: vragl T-P-KfiDvptLCEmL sytps MANA_SALTY : 278- 291: lragl T-P-KyiDipeLVAnV kfepk MANA_YEAST : 303- 316: vragf T-P-KfkDvknLVSmL tytyd R 18: 25.2856 8( 8) F-x(0,1)-L-x-[AP]-x(2)-P-x(3)-[IL]-x-G-[DTV] Occurences: 8(8) MANA_BACSU : 294- 308: kkgdh FiLpAqmPdftIkGT ctliv MANA_CAEEL : 247- 260: pgeat F-LePnmPhayLkGD cvecm MANA_CANAL : 277- 290: kgeam F-LqAkdPhayIsGD iiecm MANA_ECOLI : 248- 261: pgeam F-LfAetPhayLqGV alevm MANA_EMENI : 157- 170: aeivh F-LkAvaPlryLiGV qtatd MANA_HUMAN : 268- 281: pgeam F-LeAnvPhayLkGD cvecm MANA_SALTY : 248- 261: pgeam F-LfAetPhayLqGV alevm MANA_YEAST : 273- 286: ageai F-LrAkdPhayIsGD imecm S 19: 24.6822 12( 8) D-x(3,5)-E-x(3)-[AG]-[ILV]-T-x(1,3)-F-x(5)-F Occurences: 12(8) MANA_BACSU : 228- 248: vdgyi Dest--EsrkGITiktFvqgeyF svykw MANA_CAEEL : 120- 140: pknyp DdnhkpEiaiALTe--FellsgF rqhsq MANA_CAEEL : 121- 140: knypd Dnhkp-EiaiALTe--FellsgF rqhsq MANA_CANAL : 131- 151: pknyp DdnhkpEmaiAVTd--FegfcgF kpldq MANA_CANAL : 132- 151: knypd Dnhkp-EmaiAVTd--FegfcgF kpldq MANA_ECOLI : 128- 148: ernyk DpnhkpElvfALTp--FlamnaF refse MANA_EMENI : 128- 148: prnyp DdnhkpEmtiAITp--FeglcgF rplae MANA_EMENI : 129- 148: rnypd Dnhkp-EmtiAITp--FeglcgF rplae MANA_HUMAN : 130- 150: pqhyp DanhkpEmaiALTp--FqglcgF rpvee MANA_SALTY : 128- 148: ernyk DpnhkpElvfALTp--FlamnaF refsd MANA_YEAST : 129- 149: pknyp DdnhkpEmaiAVTd--FegfcgF kplqe MANA_YEAST : 130- 149: knypd Dnhkp-EmaiAVTd--FegfcgF kplqe T 20: 23.8485 8( 8) P-x(0,1)-K-x(2)-D-x(3)-L-[CPTV]-[AES]-x-[LMV] Occurences: 8(8) MANA_BACSU : 287- 300: edktc PlKkgDhfiLPAqM pdfti MANA_CAEEL : 278- 290: raglt P-KyiDvesLVEmL nydet MANA_CANAL : 308- 320: ragft P-KfkDvknLVEmL tysye MANA_ECOLI : 279- 291: raglt P-KyiDipeLVAnV kfeak MANA_EMENI : 315- 327: ragft P-KfkDvdtLTEmL tysya MANA_HUMAN : 299- 311: raglt P-KfiDvptLCEmL sytps MANA_SALTY : 279- 291: raglt P-KyiDipeLVAnV kfepk MANA_YEAST : 304- 316: ragft P-KfkDvknLVSmL tytyd Number of patterns evaluated by Pratt:6783 Total running time: 5 seconds