------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 22 sequences from file PLANT_LTP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 22 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PLANT_LTP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NLT1_HORVU 117 NLT1_VITSX 38 NLT2_HORVU 102 NLT2_VITSX 38 NLT3_VITSX 37 NLT4_VITSX 37 NLTA_RICCO 92 NLTA_WHEAT 113 NLTB_RICCO 92 NLTB_WHEAT 40 NLTC_RICCO 116 NLTP_DAUCA 120 NLTP_ELECO 95 NLTP_LYCES 114 NLTP_MAIZE 120 NLTP_ORYSA 91 NLTP_PARJU 143 NLTP_PINPI 36 NLTP_RAPSA 43 NLTP_SPIOL 117 NLTP_TOBAC 114 NLTX_WHEAT 28 Pratt run started at Thu Feb 6 20:49:27 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 60( 22) C-x(0,1)-G 2: 7.8401 32( 22) P-x(3,4)-C 3: 7.8401 53( 22) A-x(1,2)-C 4: 7.8401 50( 22) V-x(2,3)-L 5: 7.8401 63( 22) C-x(1,2)-V 6: 7.3401 62( 22) A-x(0,2)-C Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 60( 22) C-x(0,1)-G B 2: 7.8401 32( 22) P-x(3,4)-C C 3: 7.8401 53( 22) A-x(1,2)-C D 4: 7.8401 50( 22) V-x(2,3)-L E 5: 7.8401 63( 22) C-x(1,2)-V F 6: 7.3401 62( 22) A-x(0,2)-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 60( 22) C-x(0,1)-G Occurences: 60(22) NLT1_HORVU : 29- 30: avaln C-G qvdsk NLT1_HORVU : 54- 56: psgec CnG vrdlh NLT1_VITSX : 4- 5: ait C-G qvssa NLT1_VITSX : 14- 16: salss ClG ylkng NLT1_VITSX : 30- 31: ppgss C-G iknln NLT2_HORVU : 59- 61: kpsge CcG nlraq NLT2_HORVU : 60- 61: psgec C-G nlraq NLT2_HORVU : 95- 96: dtlnl C-G ipvph NLT2_VITSX : 4- 5: ait C-G qvssa NLT2_VITSX : 14- 16: salss ClG ylkng NLT2_VITSX : 30- 31: ppgss C-G iknln NLT3_VITSX : 3- 4: ls C-G dvatq NLT3_VITSX : 28- 30: lpaac CnG vkilk NLT4_VITSX : 4- 5: tvt C-G qvasa NLTA_RICCO : 3- 4: vd C-G qvnss NLTA_RICCO : 29- 31: psasc CaG vqnlk NLTA_RICCO : 74- 75: slpkk C-G vdini NLTA_WHEAT : 26- 27: avaid C-G hvdsl NLTA_WHEAT : 51- 53: psgqc CdG vknlh NLTA_WHEAT : 96- 97: sippk C-G vnlpy NLTB_RICCO : 3- 4: vn C-G qvnka NLTB_RICCO : 29- 31: psltc CaG vmelk NLTB_RICCO : 74- 75: slpyk C-G vvinv NLTB_WHEAT : 5- 6: avan C-G qvvsy NLTB_WHEAT : 31- 33: pgggc CsG vrgln NLTC_RICCO : 38- 40: mkaaa CvG fatgk NLTC_RICCO : 54- 56: psqac CtG lqqla NLTP_DAUCA : 30- 31: eavlt C-G qvtga NLTP_DAUCA : 40- 42: galap ClG ylrsq NLTP_DAUCA : 77- 78: dkrta C-G clkqt NLTP_DAUCA : 102- 103: glpar C-G vnipy NLTP_ELECO : 4- 5: ais C-G qvssa NLTP_ELECO : 76- 77: sipgr C-G vrlpy NLTP_LYCES : 27- 28: aealt C-G qvtag NLTP_LYCES : 50- 52: gplgg CcG gvknl NLTP_LYCES : 51- 52: plggc C-G gvknl NLTP_LYCES : 51- 53: plggc CgG vknll NLTP_MAIZE : 31- 32: eaais C-G qvasa NLTP_MAIZE : 57- 59: psagc CsG vrsln NLTP_MAIZE : 102- 103: sipsk C-G vsipy NLTP_ORYSA : 3- 4: it C-G qvnsa NLTP_ORYSA : 28- 30: psaac CsG vrslk NLTP_ORYSA : 73- 74: sipsk C-G vsvpy NLTP_PARJU : 24- 26: pskgc CsG akrld NLTP_PARJU : 69- 70: evpkh C-G ivdsk NLTP_PINPI : 14- 16: sdlvg CvG ylpsg NLTP_PINPI : 30- 32: ptpqc CdG vvkl NLTP_RAPSA : 4- 5: als C-G tvnsn NLTP_RAPSA : 14- 16: snlaa CiG yltqn NLTP_RAPSA : 29- 31: largc CtG vtnln NLTP_SPIOL : 30- 31: eagit C-G mvssk NLTP_SPIOL : 40- 42: sklap CiG ylkgg NLTP_SPIOL : 53- 55: plggg CcG gikal NLTP_SPIOL : 54- 55: lgggc C-G gikal NLTP_SPIOL : 54- 56: lgggc CgG ikaln NLTP_SPIOL : 99- 100: glpgm C-G vhipy NLTP_TOBAC : 27- 28: aeals C-G qvqsg NLTP_TOBAC : 50- 52: gplgs CcG gvkgl NLTP_TOBAC : 51- 52: plgsc C-G gvkgl NLTP_TOBAC : 51- 53: plgsc CgG vkgll NLTP_TOBAC : 96- 97: glpga C-G vnipy NLTX_WHEAT : 24- 26: kpsge CcG nl NLTX_WHEAT : 25- 26: psgec C-G nl B 2: 7.8401 32( 22) P-x(3,4)-C Occurences: 32(22) NLT1_HORVU : 49- 53: qggpg Psge-C cngvr NLT1_HORVU : 49- 54: qggpg PsgecC ngvrd NLT1_HORVU : 109- 113: pytis Pdid-C sriy NLT1_VITSX : 25- 30: nggav PpgssC giknl NLT1_VITSX : 26- 30: ggavp Pgss-C giknl NLT2_HORVU : 55- 59: lggtk Psge-C cgnlr NLT2_HORVU : 55- 60: lggtk PsgecC gnlra NLT2_HORVU : 98- 102: nlcgi Pvph-C NLT2_VITSX : 25- 30: nggav PpgssC giknl NLT2_VITSX : 26- 30: ggavp Pgss-C giknl NLT3_VITSX : 22- 27: lrgag PlpaaC cngvk NLT3_VITSX : 24- 28: gagpl Paac-C ngvki NLT4_VITSX : 25- 29: kdgav Pags-C cxkxl NLT4_VITSX : 25- 30: kdgav PagscC xkxls NLTA_RICCO : 24- 28: ggvas Psas-C cagvq NLTA_RICCO : 24- 29: ggvas PsascC agvqn NLTA_WHEAT : 46- 50: qggpg Psgq-C cdgvk NLTA_WHEAT : 46- 51: qggpg PsgqcC dgvkn NLTB_RICCO : 24- 28: gfdtt Pslt-C cagvm NLTB_RICCO : 24- 29: gfdtt PsltcC agvme NLTB_WHEAT : 26- 30: grvsa Pggg-C csgvr NLTB_WHEAT : 26- 31: grvsa PgggcC sgvrg NLTC_RICCO : 49- 53: gkdsk Psqa-C ctglq NLTC_RICCO : 49- 54: gkdsk PsqacC tglqq NLTP_DAUCA : 51- 56: sqvnv PvpltC cnvvr NLTP_DAUCA : 53- 57: vnvpv Pltc-C nvvrg NLTP_DAUCA : 112- 116: pykis Pttd-C nrvv NLTP_ELECO : 25- 29: gagaa Psas-C qsgvr NLTP_LYCES : 46- 50: lqgrg Plgg-C cggvk NLTP_LYCES : 46- 51: lqgrg PlggcC ggvkn NLTP_LYCES : 106- 110: pykis Pstd-C stvq NLTP_MAIZE : 52- 56: gqgsg Psag-C csgvr NLTP_MAIZE : 52- 57: gqgsg PsagcC sgvrs NLTP_ORYSA : 23- 27: rggag Psaa-C csgvr NLTP_ORYSA : 23- 28: rggag PsaacC sgvrs NLTP_PARJU : 19- 23: gkeke Pskg-C csgak NLTP_PARJU : 19- 24: gkeke PskgcC sgakr NLTP_PINPI : 25- 29: sgtgn Ptpq-C cdgvv NLTP_PINPI : 25- 30: sgtgn PtpqcC dgvvk NLTP_RAPSA : 23- 28: ltqna PlargC ctgvt NLTP_SPIOL : 48- 53: ylkgg PlgggC cggik NLTP_SPIOL : 109- 113: pyais Pstn-C navh NLTP_TOBAC : 46- 50: lqgrg Plgs-C cggvk NLTP_TOBAC : 46- 51: lqgrg PlgscC ggvkg NLTP_TOBAC : 106- 110: pykis Pstd-C skvq NLTX_WHEAT : 20- 24: lggtk Psge-C cgnl NLTX_WHEAT : 20- 25: lggtk PsgecC gnl C 3: 7.8401 53( 22) A-x(1,2)-C Occurences: 53(22) NLT1_HORVU : 26- 29: praav AlnC gqvds NLT1_VITSX : 1- 4: AitC gqvss NLT2_HORVU : 35- 37: dagag Aa-C epaql NLT2_HORVU : 43- 45: epaql Av-C asail NLT2_VITSX : 1- 4: AitC gqvss NLT3_VITSX : 11- 13: vatqm As-C inylr NLT3_VITSX : 25- 27: agplp Aa-C cngvk NLT3_VITSX : 25- 28: agplp AacC ngvki NLT3_VITSX : 26- 28: gplpa Ac-C ngvki NLT4_VITSX : 26- 29: dgavp AgsC cxkxl NLTA_RICCO : 11- 13: vnssl As-C ipflt NLTA_RICCO : 26- 28: vasps As-C cagvq NLTA_RICCO : 26- 29: vasps AscC agvqn NLTA_RICCO : 47- 49: sadrr Aa-C ecika NLTA_RICCO : 48- 51: adrra AceC ikaaa NLTA_WHEAT : 23- 26: praav AidC ghvds NLTA_WHEAT : 70- 73: sdrqs AcnC lkgia NLTB_RICCO : 48- 51: kdkri AceC vktaa NLTB_WHEAT : 3- 5: av An-C gqvvs NLTB_WHEAT : 13- 15: vvsyl Ap-C isyam NLTC_RICCO : 25- 28: ntnea AvpC stvdm NLTC_RICCO : 35- 38: tvdmk AaaC vgfat NLTC_RICCO : 36- 38: vdmka Aa-C vgfat NLTC_RICCO : 52- 54: skpsq Ac-C tglqq NLTC_RICCO : 72- 74: vddkk Ai-C rclka NLTC_RICCO : 96- 98: lskip Aa-C nikvg NLTP_DAUCA : 38- 40: vtgal Ap-C lgylr NLTP_DAUCA : 76- 79: ldkrt AcgC lkqta NLTP_DAUCA : 100- 102: aaglp Ar-C gvnip NLTP_ELECO : 1- 4: AisC gqvss NLTP_ELECO : 27- 29: gaaps As-C qsgvr NLTP_ELECO : 48- 50: tadrr Aa-C ncslk NLTP_ELECO : 49- 52: adrra AcnC slksa NLTP_LYCES : 24- 27: aphae AltC gqvta NLTP_LYCES : 35- 37: vtagl Ap-C lpylq NLTP_LYCES : 70- 73: adrkt ActC lksaa NLTP_MAIZE : 28- 31: atsea AisC gqvas NLTP_MAIZE : 39- 41: vasai Ap-C isyar NLTP_MAIZE : 54- 56: gsgps Ag-C csgvr NLTP_MAIZE : 54- 57: gsgps AgcC sgvrs NLTP_MAIZE : 75- 77: tadrr Aa-C nclkn NLTP_MAIZE : 76- 79: adrra AcnC lknaa NLTP_ORYSA : 25- 27: gagps Aa-C csgvr NLTP_ORYSA : 25- 28: gagps AacC sgvrs NLTP_ORYSA : 26- 28: agpsa Ac-C sgvrs NLTP_ORYSA : 47- 50: adrrt AcnC lknaa NLTP_PARJU : 43- 46: pqrvh AceC iqtam NLTP_PINPI : 1- 4: AvdC ntvks NLTP_RAPSA : 1- 4: AlsC gtvns NLTP_RAPSA : 12- 14: vnsnl Aa-C igylt NLTP_RAPSA : 25- 28: qnapl ArgC ctgvt NLTP_SPIOL : 38- 40: vsskl Ap-C igylk NLTP_SPIOL : 73- 76: pdrkt AcnC lksaa NLTP_TOBAC : 24- 27: aphae AlsC gqvqs NLTP_TOBAC : 35- 37: vqsgl Ap-C lpylq NLTP_TOBAC : 70- 73: sdrkt ActC lksaa NLTX_WHEAT : 8- 10: evtql Av-C asail D 4: 7.8401 50( 22) V-x(2,3)-L Occurences: 50(22) NLT1_HORVU : 14- 17: maaal Vlm-L taapr NLT1_HORVU : 57- 60: eccng Vrd-L hnqaq NLT1_HORVU : 73- 77: gdrqt VcncL kgiar NLT1_VITSX : 7- 11: itcgq VssaL ssclg NLT2_HORVU : 22- 25: vmmvm Vvt-L aagad NLT2_VITSX : 7- 11: itcgq VssaL ssclg NLT3_VITSX : 31- 34: accng Vki-L kls NLT4_VITSX : 7- 11: vtcgq VasaL spcid NLTA_RICCO : 6- 10: vdcgq VnssL ascip NLTA_RICCO : 32- 35: sccag Vqn-L ktlap NLTA_WHEAT : 8- 12: vmlma ValvL mlaav NLTA_WHEAT : 11- 14: maval Vlm-L aavpr NLTA_WHEAT : 29- 32: idcgh Vds-L vrpcl NLTA_WHEAT : 33- 37: hvdsl VrpcL syvqg NLTA_WHEAT : 54- 57: qccdg Vkn-L hnqar NLTB_RICCO : 6- 10: vncgq VnkaL sscvp NLTB_RICCO : 14- 17: alssc Vpf-L tgfdt NLTB_RICCO : 32- 35: tccag Vme-L krlap NLTB_WHEAT : 8- 12: ancgq VvsyL apcis NLTB_WHEAT : 9- 12: ncgqv Vsy-L apcis NLTB_WHEAT : 34- 37: gccsg Vrg-L naa NLTC_RICCO : 5- 9: mknv VfsvL lllsf NLTC_RICCO : 8- 11: nvvfs Vll-L lsflf NLTC_RICCO : 8- 12: nvvfs VlllL sflfc NLTP_DAUCA : 33- 37: ltcgq VtgaL apclg NLTP_DAUCA : 50- 54: rsqvn VpvpL tccnv NLTP_DAUCA : 59- 63: ltccn VvrgL nnaar NLTP_DAUCA : 60- 63: tccnv Vrg-L nnaar NLTP_DAUCA : 87- 90: qtana Vtg-L nlnaa NLTP_ELECO : 33- 36: scqsg Vrs-L naaar NLTP_ELECO : 61- 64: saasr Vsg-L nagka NLTP_LYCES : 30- 34: ltcgq VtagL apclp NLTP_LYCES : 54- 57: gccgg Vkn-L lgsak NLTP_LYCES : 54- 58: gccgg VknlL gsakt NLTP_MAIZE : 14- 17: vvata Vva-L vllaa NLTP_MAIZE : 15- 19: vatav ValvL laaat NLTP_MAIZE : 60- 63: gccsg Vrs-L nnaar NLTP_MAIZE : 87- 90: naaag Vsg-L nagna NLTP_ORYSA : 10- 14: qvnsa VgpcL tyarg NLTP_ORYSA : 31- 34: accsg Vrs-L kaaas NLTP_PARJU : 2- 5: m Vra-L mpclp NLTP_PARJU : 72- 76: khcgi VdskL ppidv NLTP_PINPI : 7- 11: vdcnt VksdL vgcvg NLTP_PINPI : 15- 18: dlvgc Vgy-L psgtg NLTP_PINPI : 33- 36: qccdg Vvk-L NLTP_RAPSA : 7- 11: lscgt VnsnL aacig NLTP_RAPSA : 32- 35: gcctg Vtn-L nnmax NLTP_SPIOL : 6- 9: massa Vik-L acavl NLTP_SPIOL : 33- 37: itcgm VsskL apcig NLTP_TOBAC : 30- 34: lscgq VqsgL apclp NLTP_TOBAC : 54- 57: sccgg Vkg-L lgaak NLTP_TOBAC : 54- 58: sccgg VkglL gaaks NLTX_WHEAT : 4- 7: ace Vtq-L avcas E 5: 7.8401 63( 22) C-x(1,2)-V Occurences: 63(22) NLT1_HORVU : 29- 32: avaln CgqV dskmk NLT1_HORVU : 54- 57: psgec CngV rdlhn NLT1_HORVU : 99- 101: sipsk Cn-V nvpyt NLT1_VITSX : 4- 7: ait CgqV ssals NLT2_HORVU : 71- 74: qqgcl CqyV kdpny NLT2_VITSX : 4- 7: ait CgqV ssals NLT3_VITSX : 3- 6: ls CgdV atqma NLT3_VITSX : 28- 31: lpaac CngV kilkl NLT4_VITSX : 4- 7: tvt CgqV asals NLTA_RICCO : 3- 6: vd CgqV nssla NLTA_RICCO : 29- 32: psasc CagV qnlkt NLTA_RICCO : 74- 76: slpkk Cg-V dinip NLTA_WHEAT : 26- 29: avaid CghV dslvr NLTA_WHEAT : 51- 54: psgqc CdgV knlhn NLTA_WHEAT : 96- 98: sippk Cg-V nlpyt NLTA_WHEAT : 110- 113: slnid CsrV NLTB_RICCO : 3- 6: vn CgqV nkals NLTB_RICCO : 29- 32: psltc CagV melkr NLTB_RICCO : 49- 52: dkria CecV ktaaa NLTB_RICCO : 74- 76: slpyk Cg-V vinvp NLTB_RICCO : 74- 77: slpyk CgvV invpi NLTB_WHEAT : 5- 8: avan CgqV vsyla NLTB_WHEAT : 31- 34: pgggc CsgV rglna NLTC_RICCO : 28- 31: eaavp CstV dmkaa NLTP_DAUCA : 30- 33: eavlt CgqV tgala NLTP_DAUCA : 56- 59: pvplt CcnV vrgln NLTP_DAUCA : 57- 59: vpltc Cn-V vrgln NLTP_DAUCA : 57- 60: vpltc CnvV rglnn NLTP_DAUCA : 102- 104: glpar Cg-V nipyk NLTP_DAUCA : 116- 119: spttd CnrV v NLTP_ELECO : 4- 7: ais CgqV ssaig NLTP_ELECO : 76- 78: sipgr Cg-V rlpya NLTP_ELECO : 90- 93: sasid CsrV nn NLTP_LYCES : 9- 11: vskia Cf-V llcmv NLTP_LYCES : 14- 16: cfvll Cm-V vvaph NLTP_LYCES : 14- 17: cfvll CmvV vapha NLTP_LYCES : 27- 30: aealt CgqV tagla NLTP_LYCES : 51- 54: plggc CggV knllg NLTP_LYCES : 96- 98: gipsv Ck-V nipyk NLTP_LYCES : 110- 113: spstd CstV q NLTP_MAIZE : 31- 34: eaais CgqV asaia NLTP_MAIZE : 57- 60: psagc CsgV rslnn NLTP_MAIZE : 102- 104: sipsk Cg-V sipyt NLTP_MAIZE : 116- 119: ststd CsrV n NLTP_ORYSA : 3- 6: it CgqV nsavg NLTP_ORYSA : 28- 31: psaac CsgV rslka NLTP_ORYSA : 73- 75: sipsk Cg-V svpyt NLTP_ORYSA : 87- 90: sasid CsrV s NLTP_PARJU : 69- 72: evpkh CgiV dsklp NLTP_PARJU : 85- 88: dvnmd CktV gvvpr NLTP_PINPI : 4- 7: avd CntV ksdlv NLTP_PINPI : 30- 33: ptpqc CdgV vkl NLTP_RAPSA : 4- 7: als CgtV nsnla NLTP_RAPSA : 29- 32: largc CtgV tnlnn NLTP_SPIOL : 11- 13: vikla Ca-V llciv NLTP_SPIOL : 16- 18: cavll Ci-V vaapy NLTP_SPIOL : 16- 19: cavll CivV aapya NLTP_SPIOL : 30- 33: eagit CgmV sskla NLTP_SPIOL : 99- 101: glpgm Cg-V hipya NLTP_SPIOL : 113- 116: spstn CnaV h NLTP_TOBAC : 9- 11: vgkia Cf-V vlcmv NLTP_TOBAC : 9- 12: vgkia CfvV lcmvv NLTP_TOBAC : 14- 16: cfvvl Cm-V vvaph NLTP_TOBAC : 14- 17: cfvvl CmvV vapha NLTP_TOBAC : 27- 30: aeals CgqV qsgla NLTP_TOBAC : 51- 54: plgsc CggV kgllg NLTP_TOBAC : 96- 98: glpga Cg-V nipyk NLTP_TOBAC : 110- 113: spstd CskV q NLTX_WHEAT : 2- 4: a Ce-V tqlav F 6: 7.3401 62( 22) A-x(0,2)-C Occurences: 62(22) NLT1_HORVU : 26- 29: praav AlnC gqvds NLT1_VITSX : 1- 4: AitC gqvss NLT2_HORVU : 35- 37: dagag Aa-C epaql NLT2_HORVU : 36- 37: agaga A--C epaql NLT2_HORVU : 43- 45: epaql Av-C asail NLT2_VITSX : 1- 4: AitC gqvss NLT3_VITSX : 11- 13: vatqm As-C inylr NLT3_VITSX : 25- 27: agplp Aa-C cngvk NLT3_VITSX : 25- 28: agplp AacC ngvki NLT3_VITSX : 26- 27: gplpa A--C cngvk NLT3_VITSX : 26- 28: gplpa Ac-C ngvki NLT4_VITSX : 26- 29: dgavp AgsC cxkxl NLTA_RICCO : 11- 13: vnssl As-C ipflt NLTA_RICCO : 26- 28: vasps As-C cagvq NLTA_RICCO : 26- 29: vasps AscC agvqn NLTA_RICCO : 47- 49: sadrr Aa-C ecika NLTA_RICCO : 48- 49: adrra A--C ecika NLTA_RICCO : 48- 51: adrra AceC ikaaa NLTA_WHEAT : 23- 26: praav AidC ghvds NLTA_WHEAT : 70- 71: sdrqs A--C nclkg NLTA_WHEAT : 70- 73: sdrqs AcnC lkgia NLTB_RICCO : 48- 49: kdkri A--C ecvkt NLTB_RICCO : 48- 51: kdkri AceC vktaa NLTB_WHEAT : 3- 5: av An-C gqvvs NLTB_WHEAT : 13- 15: vvsyl Ap-C isyam NLTC_RICCO : 25- 28: ntnea AvpC stvdm NLTC_RICCO : 35- 38: tvdmk AaaC vgfat NLTC_RICCO : 36- 38: vdmka Aa-C vgfat NLTC_RICCO : 37- 38: dmkaa A--C vgfat NLTC_RICCO : 52- 53: skpsq A--C ctglq NLTC_RICCO : 52- 54: skpsq Ac-C tglqq NLTC_RICCO : 72- 74: vddkk Ai-C rclka NLTC_RICCO : 96- 98: lskip Aa-C nikvg NLTC_RICCO : 97- 98: skipa A--C nikvg NLTP_DAUCA : 38- 40: vtgal Ap-C lgylr NLTP_DAUCA : 76- 77: ldkrt A--C gclkq NLTP_DAUCA : 76- 79: ldkrt AcgC lkqta NLTP_DAUCA : 100- 102: aaglp Ar-C gvnip NLTP_ELECO : 1- 4: AisC gqvss NLTP_ELECO : 27- 29: gaaps As-C qsgvr NLTP_ELECO : 48- 50: tadrr Aa-C ncslk NLTP_ELECO : 49- 50: adrra A--C ncslk NLTP_ELECO : 49- 52: adrra AcnC slksa NLTP_LYCES : 8- 9: mvski A--C fvllc NLTP_LYCES : 24- 27: aphae AltC gqvta NLTP_LYCES : 35- 37: vtagl Ap-C lpylq NLTP_LYCES : 70- 71: adrkt A--C tclks NLTP_LYCES : 70- 73: adrkt ActC lksaa NLTP_MAIZE : 28- 31: atsea AisC gqvas NLTP_MAIZE : 39- 41: vasai Ap-C isyar NLTP_MAIZE : 54- 56: gsgps Ag-C csgvr NLTP_MAIZE : 54- 57: gsgps AgcC sgvrs NLTP_MAIZE : 75- 77: tadrr Aa-C nclkn NLTP_MAIZE : 76- 77: adrra A--C nclkn NLTP_MAIZE : 76- 79: adrra AcnC lknaa NLTP_ORYSA : 25- 27: gagps Aa-C csgvr NLTP_ORYSA : 25- 28: gagps AacC sgvrs NLTP_ORYSA : 26- 27: agpsa A--C csgvr NLTP_ORYSA : 26- 28: agpsa Ac-C sgvrs NLTP_ORYSA : 47- 48: adrrt A--C nclkn NLTP_ORYSA : 47- 50: adrrt AcnC lknaa NLTP_PARJU : 43- 44: pqrvh A--C eciqt NLTP_PARJU : 43- 46: pqrvh AceC iqtam NLTP_PINPI : 1- 4: AvdC ntvks NLTP_RAPSA : 1- 4: AlsC gtvns NLTP_RAPSA : 12- 14: vnsnl Aa-C igylt NLTP_RAPSA : 13- 14: nsnla A--C igylt NLTP_RAPSA : 25- 28: qnapl ArgC ctgvt NLTP_SPIOL : 10- 11: avikl A--C avllc NLTP_SPIOL : 38- 40: vsskl Ap-C igylk NLTP_SPIOL : 73- 74: pdrkt A--C nclks NLTP_SPIOL : 73- 76: pdrkt AcnC lksaa NLTP_TOBAC : 8- 9: mvgki A--C fvvlc NLTP_TOBAC : 24- 27: aphae AlsC gqvqs NLTP_TOBAC : 35- 37: vqsgl Ap-C lpylq NLTP_TOBAC : 70- 71: sdrkt A--C tclks NLTP_TOBAC : 70- 73: sdrkt ActC lksaa NLTP_TOBAC : 95- 96: aglpg A--C gvnip NLTX_WHEAT : 1- 2: A--C evtql NLTX_WHEAT : 8- 10: evtql Av-C asail Number of patterns evaluated by Pratt:11 Total running time: 0 seconds