------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file PIR_REPEAT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PIR_REPEAT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CWP2_YEAST 92 H150_YEAST 412 PIR1_YEAST 341 PIR3_YEAST 361 TIR1_YEAST 254 TIR2_YEAST 251 YHS6_YEAST 159 Pratt run started at Thu Feb 6 20:49:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 41.7005 20( 7) A-x-S-Q-I-x-D-G-Q-x-Q-A-T 2: 37.5305 21( 7) S-Q-I-x-D-G-Q-x-Q-A-T 3: 37.0305 39( 7) A-x(2,3)-Q-I-x-D-G-Q-x-Q-A-T 4: 33.3604 21( 7) Q-I-x-D-G-Q-x-Q-A-T 5: 29.1904 21( 7) I-x-D-G-Q-x-Q-A-T 6: 25.0203 23( 7) D-G-Q-x-Q-A-T 7: 20.8503 23( 7) G-Q-x-Q-A-T 8: 16.6802 23( 7) Q-x-Q-A-T 9: 16.1802 7( 7) A-I-x(2)-I-x(0,1)-D 10: 15.6802 10( 7) A-x(2,3)-L-A-x(0,1)-A 11: 15.6802 21( 7) A-A-x(3,4)-G-x(0,1)-G 12: 15.6802 23( 7) A-x(1,2)-A-x(4)-G-x(4,5)-A 13: 15.6802 23( 7) A-x(1,2)-A-x(4,5)-G-x(5)-A 14: 15.6802 23( 7) A-x(1,2)-A-x(3,4)-G-x(5)-A 15: 15.6802 35( 7) S-x(0,1)-Q-x(3,4)-G-x(3)-A 16: 15.6802 24( 7) S-x(5)-Q-x(0,1)-Q-x(0,1)-T 17: 15.6802 38( 7) T-x-A-A-x(1,3)-S 18: 15.6802 10( 7) A-x(0,1)-I-x(2)-I-x(0,1)-D 19: 15.6802 51( 7) A-x(2,3)-S-x(0,1)-Q-x(2)-D 20: 15.6802 12( 7) A-A-x(2,3)-S-x(1,2)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 54.6123 8( 7) A-[AIV]-S-Q-I-[GST]-D-G-Q-[IV]-Q-A-T-x-[ANST]-[AGTV] B 2: 48.7514 7( 7) S-Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] C 3: 48.2514 11( 7) A-x(2,3)-Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] D 4: 45.5266 7( 7) S-Q-I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] E 5: 45.1687 7( 7) S-Q-x(3)-G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] F 6: 45.0266 11( 7) A-x(2,3)-Q-I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] G 7: 44.5814 7( 7) Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] H 8: 40.9987 7( 7) D-G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] I 9: 40.4113 7( 7) I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] J 10: 40.3565 7( 7) S-Q-I-[ST]-D-G-Q-x(0,1)-Q-x(0,1)-T-x(2)-[AGTV]-x-[AET] K 11: 38.2181 7( 7) I-[ST]-D-G-Q-[IV]-Q-A-T-x(4)-[AET] L 12: 37.1865 7( 7) I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] M 13: 36.8286 7( 7) G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] N 14: 35.7885 13( 7) Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AEST]-[AEQT]-[AT]-x-[ANQST]-x(2)-[ADGPT]-x-[AGQS] O 15: 33.9943 36( 7) A-x(2,3)-S-x(0,1)-Q-x-[GQST]-D-[GQ]-x(2)-[EQ]-[AL]-[NST]-[ASTV]-x(3)-[ADEQST] P 16: 32.6586 7( 7) Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] Q 17: 29.1182 30( 7) T-[AQST]-A-A-x(1,3)-S-[QST]-x-[AGSTV]-x-[GSTV]-x(3)-[AES]-[AGQST] R 18: 24.3872 11( 7) A-x(1,2)-A-x(2)-[GQ]-x-G-x(4,5)-A-[AT]-x-[ANST] S 19: 22.7005 7( 7) A-I-[DS]-x-I-x(0,1)-D-[CG] T 20: 22.2005 10( 7) A-x(0,1)-I-[DS]-x-I-x(0,1)-D-[CG] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 54.6123 8( 7) A-[AIV]-S-Q-I-[GST]-D-G-Q-[IV]-Q-A-T-x-[ANST]-[AGTV] Occurences: 8(7) CWP2_YEAST : 25- 40: aesaa AISQITDGQIQATtTA tteat H150_YEAST : 141- 156: kttaa AVSQISDGQIQATtTT lapks H150_YEAST : 165- 180: kstaa AVSQIGDGQVQATtTT lapks PIR1_YEAST : 185- 200: kttaa AVSQIGDGQIQATtNT tvapv PIR3_YEAST : 202- 217: kstaa AASQISDGQVQATtST kaaas TIR1_YEAST : 212- 227: gakts AISQITDGQIQATkAV seqte TIR2_YEAST : 209- 224: stkas AISQISDGQVQATsTV seqte YHS6_YEAST : 102- 117: kkqda AISQISDGQIQATaSG petta B 2: 48.7514 7( 7) S-Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 27- 42: saaai SQITDGQIQATttAtT eattt H150_YEAST : 143- 158: taaav SQISDGQIQATttTlA pksta PIR1_YEAST : 206- 221: tvapv SQITDGQIQATtlTsA tiips PIR3_YEAST : 204- 219: taaaa SQISDGQVQATtsTkA aasqi TIR1_YEAST : 214- 229: ktsai SQITDGQIQATkaVsE qteng TIR2_YEAST : 211- 226: kasai SQISDGQVQATstVsE qteng YHS6_YEAST : 104- 119: qdaai SQISDGQIQATasGpE ttaat C 3: 48.2514 11( 7) A-x(2,3)-Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 11(7) CWP2_YEAST : 24- 42: aaesa AaisQITDGQIQATttAtT eattt CWP2_YEAST : 25- 42: aesaa Ais-QITDGQIQATttAtT eattt H150_YEAST : 140- 158: aktta AavsQISDGQIQATttTlA pksta H150_YEAST : 141- 158: kttaa Avs-QISDGQIQATttTlA pksta PIR1_YEAST : 203- 221: tnttv ApvsQITDGQIQATtlTsA tiips PIR3_YEAST : 201- 219: aksta AaasQISDGQVQATtsTkA aasqi PIR3_YEAST : 202- 219: kstaa Aas-QISDGQVQATtsTkA aasqi TIR1_YEAST : 212- 229: gakts Ais-QITDGQIQATkaVsE qteng TIR2_YEAST : 209- 226: stkas Ais-QISDGQVQATstVsE qteng YHS6_YEAST : 101- 119: gkkqd AaisQISDGQIQATasGpE ttaat YHS6_YEAST : 102- 119: kkqda Ais-QISDGQIQATasGpE ttaat D 4: 45.5266 7( 7) S-Q-I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 27- 42: saaai SQITDGQiQATttAtT eattt H150_YEAST : 143- 158: taaav SQISDGQiQATttTlA pksta PIR1_YEAST : 206- 221: tvapv SQITDGQiQATtlTsA tiips PIR3_YEAST : 204- 219: taaaa SQISDGQvQATtsTkA aasqi TIR1_YEAST : 214- 229: ktsai SQITDGQiQATkaVsE qteng TIR2_YEAST : 211- 226: kasai SQISDGQvQATstVsE qteng YHS6_YEAST : 104- 119: qdaai SQISDGQiQATasGpE ttaat E 5: 45.1687 7( 7) S-Q-x(3)-G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] Occurences: 7(7) CWP2_YEAST : 27- 49: saaai SQitdGQIQATtTAttEAtTtaA psstv H150_YEAST : 285- 307: ttqaa SQvsdGQVQATtATsaSAaAtsT dpvda PIR1_YEAST : 187- 209: taaav SQigdGQIQATtNTtvAPvSqiT dgqiq PIR3_YEAST : 204- 226: taaaa SQisdGQVQATtSTkaAAsQitD gqiqa TIR1_YEAST : 214- 236: ktsai SQitdGQIQATkAVseQTeNgaA kafvg TIR2_YEAST : 211- 233: kasai SQisdGQVQATsTVseQTeNgaA kavig YHS6_YEAST : 104- 126: qdaai SQisdGQIQATaSGpeTTaAttP sstan F 6: 45.0266 11( 7) A-x(2,3)-Q-I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 11(7) CWP2_YEAST : 24- 42: aaesa AaisQITDGQiQATttAtT eattt CWP2_YEAST : 25- 42: aesaa Ais-QITDGQiQATttAtT eattt H150_YEAST : 140- 158: aktta AavsQISDGQiQATttTlA pksta H150_YEAST : 141- 158: kttaa Avs-QISDGQiQATttTlA pksta PIR1_YEAST : 203- 221: tnttv ApvsQITDGQiQATtlTsA tiips PIR3_YEAST : 201- 219: aksta AaasQISDGQvQATtsTkA aasqi PIR3_YEAST : 202- 219: kstaa Aas-QISDGQvQATtsTkA aasqi TIR1_YEAST : 212- 229: gakts Ais-QITDGQiQATkaVsE qteng TIR2_YEAST : 209- 226: stkas Ais-QISDGQvQATstVsE qteng YHS6_YEAST : 101- 119: gkkqd AaisQISDGQiQATasGpE ttaat YHS6_YEAST : 102- 119: kkqda Ais-QISDGQiQATasGpE ttaat G 7: 44.5814 7( 7) Q-I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 28- 42: aaais QITDGQIQATttAtT eattt H150_YEAST : 144- 158: aaavs QISDGQIQATttTlA pksta PIR1_YEAST : 207- 221: vapvs QITDGQIQATtlTsA tiips PIR3_YEAST : 205- 219: aaaas QISDGQVQATtsTkA aasqi TIR1_YEAST : 215- 229: tsais QITDGQIQATkaVsE qteng TIR2_YEAST : 212- 226: asais QISDGQVQATstVsE qteng YHS6_YEAST : 105- 119: daais QISDGQIQATasGpE ttaat H 8: 40.9987 7( 7) D-G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] Occurences: 7(7) CWP2_YEAST : 31- 49: isqit DGQIQATtTAttEAtTtaA psstv H150_YEAST : 289- 307: asqvs DGQVQATtATsaSAaAtsT dpvda PIR1_YEAST : 191- 209: vsqig DGQIQATtNTtvAPvSqiT dgqiq PIR3_YEAST : 208- 226: asqis DGQVQATtSTkaAAsQitD gqiqa TIR1_YEAST : 218- 236: isqit DGQIQATkAVseQTeNgaA kafvg TIR2_YEAST : 215- 233: isqis DGQVQATsTVseQTeNgaA kavig YHS6_YEAST : 108- 126: isqis DGQIQATaSGpeTTaAttP sstan I 9: 40.4113 7( 7) I-[ST]-D-G-Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 29- 42: aaisq ITDGQIQATttAtT eattt H150_YEAST : 145- 158: aavsq ISDGQIQATttTlA pksta PIR1_YEAST : 208- 221: apvsq ITDGQIQATtlTsA tiips PIR3_YEAST : 206- 219: aaasq ISDGQVQATtsTkA aasqi TIR1_YEAST : 216- 229: saisq ITDGQIQATkaVsE qteng TIR2_YEAST : 213- 226: saisq ISDGQVQATstVsE qteng YHS6_YEAST : 106- 119: aaisq ISDGQIQATasGpE ttaat J 10: 40.3565 7( 7) S-Q-I-[ST]-D-G-Q-x(0,1)-Q-x(0,1)-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 27- 42: saaai SQITDGQiQaTttAtT eattt H150_YEAST : 143- 158: taaav SQISDGQiQaTttTlA pksta PIR1_YEAST : 206- 221: tvapv SQITDGQiQaTtlTsA tiips PIR3_YEAST : 204- 219: taaaa SQISDGQvQaTtsTkA aasqi TIR1_YEAST : 214- 229: ktsai SQITDGQiQaTkaVsE qteng TIR2_YEAST : 211- 226: kasai SQISDGQvQaTstVsE qteng YHS6_YEAST : 104- 119: qdaai SQISDGQiQaTasGpE ttaat K 11: 38.2181 7( 7) I-[ST]-D-G-Q-[IV]-Q-A-T-x(4)-[AET] Occurences: 7(7) CWP2_YEAST : 29- 42: aaisq ITDGQIQATttatT eattt H150_YEAST : 145- 158: aavsq ISDGQIQATtttlA pksta PIR1_YEAST : 208- 221: apvsq ITDGQIQATtltsA tiips PIR3_YEAST : 206- 219: aaasq ISDGQVQATtstkA aasqi TIR1_YEAST : 216- 229: saisq ITDGQIQATkavsE qteng TIR2_YEAST : 213- 226: saisq ISDGQVQATstvsE qteng YHS6_YEAST : 106- 119: aaisq ISDGQIQATasgpE ttaat L 12: 37.1865 7( 7) I-[ST]-D-G-Q-x-Q-A-T-x(2)-[AGTV]-x-[AET] Occurences: 7(7) CWP2_YEAST : 29- 42: aaisq ITDGQiQATttAtT eattt H150_YEAST : 145- 158: aavsq ISDGQiQATttTlA pksta PIR1_YEAST : 208- 221: apvsq ITDGQiQATtlTsA tiips PIR3_YEAST : 206- 219: aaasq ISDGQvQATtsTkA aasqi TIR1_YEAST : 216- 229: saisq ITDGQiQATkaVsE qteng TIR2_YEAST : 213- 226: saisq ISDGQvQATstVsE qteng YHS6_YEAST : 106- 119: aaisq ISDGQiQATasGpE ttaat M 13: 36.8286 7( 7) G-Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] Occurences: 7(7) CWP2_YEAST : 32- 49: sqitd GQIQATtTAttEAtTtaA psstv H150_YEAST : 290- 307: sqvsd GQVQATtATsaSAaAtsT dpvda PIR1_YEAST : 192- 209: sqigd GQIQATtNTtvAPvSqiT dgqiq PIR3_YEAST : 209- 226: sqisd GQVQATtSTkaAAsQitD gqiqa TIR1_YEAST : 219- 236: sqitd GQIQATkAVseQTeNgaA kafvg TIR2_YEAST : 216- 233: sqisd GQVQATsTVseQTeNgaA kavig YHS6_YEAST : 109- 126: sqisd GQIQATaSGpeTTaAttP sstan N 14: 35.7885 13( 7) Q-[IV]-Q-A-T-x(2)-[AGTV]-x-[AEST]-[AEQT]-[AT]-x-[ANQST]-x(2)-[ADGPT]-x-[AGQS] Occurences: 13(7) CWP2_YEAST : 33- 51: qitdg QIQATttAtTEAtTtaApS stvet H150_YEAST : 106- 124: qigdg QIQATtkTtAAAvSqiGdG qiqat H150_YEAST : 235- 253: qigdg QVQATtkTtAAAvSqiGdG qvqat H150_YEAST : 254- 272: qigdg QVQATtkTtAAAvSqiTdG qvqat PIR1_YEAST : 74- 92: qigdg QIQATtkTtAAAvSqiGdG qiqat PIR1_YEAST : 93- 111: qigdg QIQATtkTkAAAvSqiGdG qiqat PIR1_YEAST : 136- 154: qigdg QIQATtkTkAAAvSqiGdG qiqat PIR1_YEAST : 155- 173: qigdg QIQATtkTtAAAvSqiGdG qiqat PIR1_YEAST : 174- 192: qigdg QIQATtkTtAAAvSqiGdG qiqat PIR3_YEAST : 210- 228: qisdg QVQATtsTkAAAsQitDgQ iqask TIR1_YEAST : 220- 238: qitdg QIQATkaVsEQTeNgaAkA fvgmg TIR2_YEAST : 217- 235: qisdg QVQATstVsEQTeNgaAkA vigmg YHS6_YEAST : 110- 128: qisdg QIQATasGpETTaAttPsS tanvs O 15: 33.9943 36( 7) A-x(2,3)-S-x(0,1)-Q-x-[GQST]-D-[GQ]-x(2)-[EQ]-[AL]-[NST]-[ASTV]-x(3)-[ADEQST] Occurences: 36(7) CWP2_YEAST : 23- 42: vaaes AaaiS-QiTDGqiQATTtatT eattt CWP2_YEAST : 24- 42: aaesa Aai-S-QiTDGqiQATTtatT eattt H150_YEAST : 96- 115: stkst AaavS-QiGDGqiQATTkttA aavsq H150_YEAST : 97- 115: tksta Aav-S-QiGDGqiQATTkttA aavsq H150_YEAST : 115- 134: ttktt AaavS-QiGDGqiQATTkttS aktta H150_YEAST : 116- 134: tktta Aav-S-QiGDGqiQATTkttS aktta H150_YEAST : 139- 158: saktt AaavS-QiSDGqiQATTttlA pksta H150_YEAST : 140- 158: aktta Aav-S-QiSDGqiQATTttlA pksta H150_YEAST : 163- 182: apkst AaavS-QiGDGqvQATTttlA pksta H150_YEAST : 164- 182: pksta Aav-S-QiGDGqvQATTttlA pksta H150_YEAST : 187- 206: apkst AaavS-QiGDGqvQATTkttA aavfq H150_YEAST : 188- 206: pksta Aav-S-QiGDGqvQATTkttA aavfq H150_YEAST : 226- 244: tkttr Aav-S-QiGDGqvQATTkttA aavsq H150_YEAST : 244- 263: ttktt AaavS-QiGDGqvQATTkttA aavsq H150_YEAST : 245- 263: tktta Aav-S-QiGDGqvQATTkttA aavsq H150_YEAST : 263- 282: ttktt AaavS-QiTDGqvQATTkttQ aasqv H150_YEAST : 264- 282: tktta Aav-S-QiTDGqvQATTkttQ aasqv PIR1_YEAST : 64- 83: skakr AaaiS-QiGDGqiQATTkttA aavsq PIR1_YEAST : 65- 83: kakra Aai-S-QiGDGqiQATTkttA aavsq PIR1_YEAST : 83- 102: ttktt AaavS-QiGDGqiQATTktkA aavsq PIR1_YEAST : 84- 102: tktta Aav-S-QiGDGqiQATTktkA aavsq PIR1_YEAST : 102- 121: ttktk AaavS-QiGDGqiQATTkttS aktta PIR1_YEAST : 103- 121: tktka Aav-S-QiGDGqiQATTkttS aktta PIR1_YEAST : 126- 145: saktt AaavS-QiGDGqiQATTktkA aavsq PIR1_YEAST : 127- 145: aktta Aav-S-QiGDGqiQATTktkA aavsq PIR1_YEAST : 145- 164: ttktk AaavS-QiGDGqiQATTkttA aavsq PIR1_YEAST : 146- 164: tktka Aav-S-QiGDGqiQATTkttA aavsq PIR1_YEAST : 164- 183: ttktt AaavS-QiGDGqiQATTkttA aavsq PIR1_YEAST : 165- 183: tktta Aav-S-QiGDGqiQATTkttA aavsq PIR1_YEAST : 203- 221: tnttv Apv-S-QiTDGqiQATTltsA tiips PIR3_YEAST : 200- 219: aakst AaaaS-QiSDGqvQATTstkA aasqi PIR3_YEAST : 201- 219: aksta Aaa-S-QiSDGqvQATTstkA aasqi TIR1_YEAST : 13- 33: lfaai AalaSaQtQDQinELNVilnD vkshl TIR1_YEAST : 14- 33: faaia Ala-SaQtQDQinELNVilnD vkshl TIR2_YEAST : 207- 226: asstk AsaiS-QiSDGqvQATStvsE qteng YHS6_YEAST : 101- 119: gkkqd Aai-S-QiSDGqiQATAsgpE ttaat P 16: 32.6586 7( 7) Q-[IV]-Q-A-T-x-[AENST]-[AGTV]-x(2)-[AEQST]-[APT]-x-[ANQST]-x(2)-[ADPT] Occurences: 7(7) CWP2_YEAST : 33- 49: qitdg QIQATtTAttEAtTtaA psstv H150_YEAST : 291- 307: qvsdg QVQATtATsaSAaAtsT dpvda PIR1_YEAST : 193- 209: qigdg QIQATtNTtvAPvSqiT dgqiq PIR3_YEAST : 210- 226: qisdg QVQATtSTkaAAsQitD gqiqa TIR1_YEAST : 220- 236: qitdg QIQATkAVseQTeNgaA kafvg TIR2_YEAST : 217- 233: qisdg QVQATsTVseQTeNgaA kavig YHS6_YEAST : 110- 126: qisdg QIQATaSGpeTTaAttP sstan Q 17: 29.1182 30( 7) T-[AQST]-A-A-x(1,3)-S-[QST]-x-[AGSTV]-x-[GSTV]-x(3)-[AES]-[AGQST] Occurences: 30(7) CWP2_YEAST : 46- 61: tteat TTAAp--SStVeTvspSS tetis H150_YEAST : 95- 110: vstks TAAAv--SQiGdGqiqAT tktta H150_YEAST : 113- 129: qattk TTAAav-SQiGdGqiqAT tktts H150_YEAST : 114- 129: attkt TAAAv--SQiGdGqiqAT tktts H150_YEAST : 137- 153: ttsak TTAAav-SQiSdGqiqAT tttla H150_YEAST : 138- 153: tsakt TAAAv--SQiSdGqiqAT tttla H150_YEAST : 162- 177: lapks TAAAv--SQiGdGqvqAT tttla H150_YEAST : 186- 201: lapks TAAAv--SQiGdGqvqAT tktta H150_YEAST : 242- 258: qattk TTAAav-SQiGdGqvqAT tktta H150_YEAST : 243- 258: attkt TAAAv--SQiGdGqvqAT tktta H150_YEAST : 261- 277: qattk TTAAav-SQiTdGqvqAT tkttq H150_YEAST : 262- 277: attkt TAAAv--SQiTdGqvqAT tkttq PIR1_YEAST : 81- 97: qattk TTAAav-SQiGdGqiqAT tktka PIR1_YEAST : 82- 97: attkt TAAAv--SQiGdGqiqAT tktka PIR1_YEAST : 124- 140: ttsak TTAAav-SQiGdGqiqAT tktka PIR1_YEAST : 125- 140: tsakt TAAAv--SQiGdGqiqAT tktka PIR1_YEAST : 162- 178: qattk TTAAav-SQiGdGqiqAT tktta PIR1_YEAST : 163- 178: attkt TAAAv--SQiGdGqiqAT tktta PIR1_YEAST : 181- 197: qattk TTAAav-SQiGdGqiqAT tnttv PIR1_YEAST : 182- 197: attkt TAAAv--SQiGdGqiqAT tnttv PIR3_YEAST : 91- 106: vskks TAAAv--SQiTdGqvqAA kstaa PIR3_YEAST : 109- 124: qaaks TAAAa--SQiSdGqvqAA kstaa PIR3_YEAST : 127- 142: qaaks TAAAv--SQiTdGqvqAA kstaa PIR3_YEAST : 145- 160: qaaks TAAAv--SQiTdGqvqAA kstaa PIR3_YEAST : 163- 178: qaaks TAAAa--SQiSdGqvqAA kstaa PIR3_YEAST : 181- 196: qaaks TAAAv--SQiTdGqvqAA kstaa PIR3_YEAST : 199- 214: qaaks TAAAa--SQiSdGqvqAT tstka TIR1_YEAST : 199- 215: teaki TSAAps-STgAkTsaiSQ itdgq TIR2_YEAST : 114- 129: llgts TTAAs--STeAsSaatSS avass YHS6_YEAST : 120- 137: asgpe TTAAttpSStAnVsvyEG agmkv R 18: 24.3872 11( 7) A-x(1,2)-A-x(2)-[GQ]-x-G-x(4,5)-A-[AT]-x-[ANST] Occurences: 11(7) CWP2_YEAST : 73- 89: qteng AakAavGmGagal-AAaA mll CWP2_YEAST : 74- 89: tenga Ak-AavGmGagal-AAaA mll H150_YEAST : 69- 86: tassk AkrAasQiGdgqvqAAtT tasvs H150_YEAST : 163- 179: apkst Aa-AvsQiGdgqvqATtT tlapk PIR1_YEAST : 183- 199: ttktt Aa-AvsQiGdgqiqATtN ttvap PIR3_YEAST : 65- 82: vassk AkrAasQiGdgqvqAAtT taavs TIR1_YEAST : 235- 251: qteng AakAfvGmGagvv-AAaA mll TIR1_YEAST : 236- 251: tenga Ak-AfvGmGagvv-AAaA mll TIR2_YEAST : 232- 248: qteng AakAviGmGagvm-AAaA mll TIR2_YEAST : 233- 248: tenga Ak-AviGmGagvm-AAaA mll YHS6_YEAST : 89- 104: rsnrs Av-AdhQpGkkqd-AAiS qisdg S 19: 22.7005 7( 7) A-I-[DS]-x-I-x(0,1)-D-[CG] Occurences: 7(7) CWP2_YEAST : 25- 32: aesaa AISqItDG qiqat H150_YEAST : 406- 412: pvhle AIDlI-DC PIR1_YEAST : 66- 73: akraa AISqIgDG qiqat PIR3_YEAST : 355- 361: evylq AIDlI-DC TIR1_YEAST : 212- 219: gakts AISqItDG qiqat TIR2_YEAST : 209- 216: stkas AISqIsDG qvqat YHS6_YEAST : 102- 109: kkqda AISqIsDG qiqat T 20: 22.2005 10( 7) A-x(0,1)-I-[DS]-x-I-x(0,1)-D-[CG] Occurences: 10(7) CWP2_YEAST : 24- 32: aaesa AaISqItDG qiqat CWP2_YEAST : 25- 32: aesaa A-ISqItDG qiqat H150_YEAST : 406- 412: pvhle A-IDlI-DC PIR1_YEAST : 65- 73: kakra AaISqIgDG qiqat PIR1_YEAST : 66- 73: akraa A-ISqIgDG qiqat PIR3_YEAST : 355- 361: evylq A-IDlI-DC TIR1_YEAST : 212- 219: gakts A-ISqItDG qiqat TIR2_YEAST : 209- 216: stkas A-ISqIsDG qvqat YHS6_YEAST : 101- 109: gkkqd AaISqIsDG qiqat YHS6_YEAST : 102- 109: kkqda A-ISqIsDG qiqat Number of patterns evaluated by Pratt:2063 Total running time: 1 seconds