------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 25 sequences from file PILI_CHAPERONE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 25 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PILI_CHAPERONE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AGGD_ECOLI 252 CAFM_YERPE 258 CLPE_ECOLI 263 CS31_ECOLI 241 ECPD_ECOLI 246 FAEE_ECOLI 258 FANE_ECOLI 228 FIMB_BORPE 244 FIMC_ECOLI 241 FIMC_SALTY 230 FOCC_ECOLI 227 HFB1_HAEIN 241 HFB2_HAEIN 241 LPFB_SALTY 232 MRKB_KLEPN 233 MYFB_YEREN 267 NFAE_ECOLI 247 PAPD_ECOLI 239 PRSD_ECOLI 115 PSAB_YERPE 273 SEFB_SALEN 246 YCBF_ECOLI 72 YEHC_ECOLI 239 YHCA_ECOLI 224 YRAI_ECOLI 231 Pratt run started at Thu Feb 6 20:49:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 8.3401 46( 25) K-x(4)-P 2: 8.3401 42( 25) T-x-P 3: 7.8401 70( 25) K-x(2,3)-L 4: 7.8401 54( 25) K-x(3,4)-N 5: 7.8401 70( 25) A-x(1,2)-K 6: 7.8401 65( 25) S-x(1,2)-K 7: 7.8401 68( 25) L-x(3,4)-K 8: 7.8401 64( 25) N-x(3,4)-L 9: 7.8401 69( 25) I-x(0,1)-N 10: 7.8401 70( 25) I-x(3,4)-G 11: 7.8401 63( 25) S-x(3,4)-A 12: 7.8401 63( 25) K-x(0,1)-S 13: 7.8401 54( 25) P-x(0,1)-S 14: 7.8401 74( 25) P-x(0,1)-P 15: 7.8401 55( 25) V-x(2,3)-K 16: 7.8401 62( 25) V-x(1,2)-K 17: 7.8401 71( 25) V-x(2,3)-P 18: 7.8401 60( 25) G-x(1,2)-V 19: 7.8401 57( 25) V-x(3,4)-P 20: 7.8401 56( 25) N-x(4,5)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 9.7225 38( 25) I-x(3,4)-G-x(2)-[ENPQS] B 2: 8.3401 46( 25) K-x(4)-P C 3: 8.3401 42( 25) T-x-P D 4: 7.8401 70( 25) K-x(2,3)-L E 5: 7.8401 54( 25) K-x(3,4)-N F 6: 7.8401 70( 25) A-x(1,2)-K G 7: 7.8401 65( 25) S-x(1,2)-K H 8: 7.8401 68( 25) L-x(3,4)-K I 9: 7.8401 64( 25) N-x(3,4)-L J 10: 7.8401 69( 25) I-x(0,1)-N K 11: 7.8401 63( 25) S-x(3,4)-A L 12: 7.8401 63( 25) K-x(0,1)-S M 13: 7.8401 54( 25) P-x(0,1)-S N 14: 7.8401 74( 25) P-x(0,1)-P O 15: 7.8401 55( 25) V-x(2,3)-K P 16: 7.8401 62( 25) V-x(1,2)-K Q 17: 7.8401 71( 25) V-x(2,3)-P R 18: 7.8401 60( 25) G-x(1,2)-V S 19: 7.8401 57( 25) V-x(3,4)-P T 20: 7.8401 56( 25) N-x(4,5)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 9.7225 38( 25) I-x(3,4)-G-x(2)-[ENPQS] Occurences: 38(25) AGGD_ECOLI : 101- 109: ssrlr IvkteGafP idres CAFM_YERPE : 11- 18: lstlg Iitf-GmlS faans CAFM_YERPE : 103- 111: qnslr IaqagGvfP rdkes CLPE_ECOLI : 151- 159: rpkal IegrkGaeE gislq CS31_ECOLI : 39- 47: gatrv IyhldGngE slrvk CS31_ECOLI : 95- 103: etdir IvmvnGlyP kdres CS31_ECOLI : 159- 166: lpkld Inse-GqiE wgird CS31_ECOLI : 226- 234: lvkwe IigdlGesS etkkf CS31_ECOLI : 227- 234: vkwei Igdl-GesS etkkf ECPD_ECOLI : 233- 241: vhfya IndfgGaiE gnarl FAEE_ECOLI : 194- 202: gngkk IatdnGttQ kllmf FANE_ECOLI : 29- 36: nstry Iyne-GqqS vsvni FANE_ECOLI : 134- 142: liyrp IalknGrdE aenni FIMB_BORPE : 37- 44: tgtrv Iyna-GspE ttvkm FIMB_BORPE : 229- 237: vqywa IddfgGvtP yqaai FIMC_ECOLI : 46- 53: gatrv Iypa-GqkQ eqlav FIMC_SALTY : 62- 70: lvnsw IennaGqkE ktfiv FOCC_ECOLI : 31- 38: gatrv Iype-GqkQ vqlav FOCC_ECOLI : 89- 97: ntlri IdatnGqmP edres HFB1_HAEIN : 38- 45: tgtrv Iypa-GqkN vivkl HFB1_HAEIN : 99- 106: gqslr Itft-GgeP lpddr HFB2_HAEIN : 38- 45: tgtrv Iypa-GqkN vivkl HFB2_HAEIN : 99- 106: gqslr Itft-GseP lpddr LPFB_SALTY : 186- 193: angrd Iekt-GmvP akgsl MRKB_KLEPN : 139- 147: srfkf IyrpaGlgN rdaaa MYFB_YEREN : 252- 260: einwq IindlGseS qvfka MYFB_YEREN : 253- 260: inwqi Indl-GseS qvfka NFAE_ECOLI : 131- 138: esrqw Icvk-GipP keddr PAPD_ECOLI : 215- 222: pylsy Indy-GgrP vlsfi PRSD_ECOLI : 91- 98: pylsy Indy-GgrP vlsfi PSAB_YERPE : 110- 118: qgrvr IirtgGkfP edret PSAB_YERPE : 111- 118: grvri Irtg-GkfP edret PSAB_YERPE : 258- 265: vfwqv Indn-GgvS refks SEFB_SALEN : 214- 221: ipngy Iepf-GyaQ lpggv YCBF_ECOLI : 57- 64: vawra Indy-GglS akkeq YEHC_ECOLI : 14- 21: fnlrg Ikmk-GllS llifs YHCA_ECOLI : 75- 83: ptqpv IrveaGqvQ qvrfl YRAI_ECOLI : 216- 223: vkwaa Indy-GgsS gtetr B 2: 8.3401 46( 25) K-x(4)-P Occurences: 46(25) AGGD_ECOLI : 157- 162: vssci KlfvrP advkg CAFM_YERPE : 78- 83: denke KesedP fvvtp CAFM_YERPE : 140- 145: ddatn KqkfnP dkdvg CAFM_YERPE : 162- 167: innci KllvrP nelkg CLPE_ECOLI : 142- 147: vrtkl KlfyrP kalie CS31_ECOLI : 146- 151: intci KlilrP hnlpk CS31_ECOLI : 194- 199: asfng KalktP gtlgp CS31_ECOLI : 208- 213: gpyeq KlytlP skisv ECPD_ECOLI : 143- 148: frtri KlfyrP dglkg FAEE_ECOLI : 142- 147: lrtkl KlfyrP kalle FAEE_ECOLI : 239- 244: wtink KkpaaP eaaka FANE_ECOLI : 128- 133: innrv KliyrP ialkn FIMB_BORPE : 146- 151: irsrl KlfyrP kglsg FIMC_ECOLI : 148- 153: iisri KlyyrP aklal FIMC_ECOLI : 155- 160: yyrpa KlalpP dqaae FIMC_SALTY : 137- 142: ilsri KlfvrP anlpq FOCC_ECOLI : 133- 138: ivsri KllyrP qglvi HFB1_HAEIN : 74- 79: pnadp KytktP fvitp HFB1_HAEIN : 147- 152: irsrl KlfyrP aklsl HFB1_HAEIN : 154- 159: fyrpa KlsldP fdamk HFB2_HAEIN : 74- 79: pnadp KytktP fvitp HFB2_HAEIN : 147- 152: irsrl KlfyrP aklsm LPFB_SALTY : 135- 140: vrtrl KlfyrP aalka LPFB_SALTY : 188- 193: grdie KtgmvP akgsl MRKB_KLEPN : 137- 142: irsrf KfiyrP aglgn MYFB_YEREN : 84- 89: vkged KhspaP fmatp MYFB_YEREN : 166- 171: vgtcm KllvrP dqlrq NFAE_ECOLI : 170- 175: vssci KlfvrP pavkg PAPD_ECOLI : 65- 70: nenqe KiitgP viatp PAPD_ECOLI : 133- 138: lqtki KlfyrP aaikt PRSD_ECOLI : 10- 15: lqtki KlfyrP aaikt PSAB_YERPE : 85- 90: vkded KtspaP fivtp PSAB_YERPE : 165- 170: istci KllfrP dkvkg PSAB_YERPE : 172- 177: lfrpd KvkgdP tdsad SEFB_SALEN : 28- 33: asses KkieqP lltqk SEFB_SALEN : 81- 86: vyndd KsskaP fivtp SEFB_SALEN : 157- 162: tnsci KliyrP ktidl YCBF_ECOLI : 67- 72: glsak KeqnlP YEHC_ECOLI : 103- 108: sgqqv KikimP nklpt YEHC_ECOLI : 148- 153: mqnri KlfyrP agiap YHCA_ECOLI : 183- 188: tgain KtyflP htstt YHCA_ECOLI : 203- 208: natdt KvefyP asryg YRAI_ECOLI : 40- 45: ydasr KeaalP vankg YRAI_ECOLI : 49- 54: lpvan KgaetP yllqs YRAI_ECOLI : 136- 141: fktri KmfyrP ahlkg YRAI_ECOLI : 199- 204: apgeh KqlplP asggk C 3: 8.3401 42( 25) T-x-P Occurences: 42(25) AGGD_ECOLI : 85- 87: apfii TpP lfrld CAFM_YERPE : 87- 89: dpfvv TpP lfrld CLPE_ECOLI : 79- 81: ivekd TrP tfvvt CLPE_ECOLI : 176- 178: tmlvn TtP yifai CS31_ECOLI : 79- 81: adfiv TpP lfrld CS31_ECOLI : 211- 213: eqkly TlP skisv ECPD_ECOLI : 74- 76: epgsi TvP ftrtp ECPD_ECOLI : 80- 82: vpftr TpP vsrid ECPD_ECOLI : 178- 180: aslrv TnP tpyyv FAEE_ECOLI : 79- 81: ivekd TrP tfvvt FAEE_ECOLI : 176- 178: tmlvn TtP yifai FANE_ECOLI : 161- 163: sclen TtP yyfai FIMB_BORPE : 82- 84: vpffl TpP larvd FIMB_BORPE : 108- 110: ypdgk TlP sdres FIMC_ECOLI : 87- 89: grfiv TpP lfamk FIMC_SALTY : 76- 78: ktfiv TpP lfvse FIMC_SALTY : 168- 170: nhlki TnP sayyl FOCC_ECOLI : 72- 74: arfvi TpP lfsmq HFB1_HAEIN : 83- 85: tpfvi TpP varve HFB2_HAEIN : 83- 85: tpfvi TpP varve LPFB_SALTY : 75- 77: tpfii TpP lfkls LPFB_SALTY : 97- 99: vnttn TlP qdres MRKB_KLEPN : 68- 70: tpdti TtP fiitp MRKB_KLEPN : 74- 76: tpfii TpP isrvd MYFB_YEREN : 66- 68: vslsv TnP qdypi MYFB_YEREN : 93- 95: apfma TpP lfrld NFAE_ECOLI : 98- 100: apfww TpP lfrrd PAPD_ECOLI : 68- 70: qekii TgP viatp PAPD_ECOLI : 74- 76: gpvia TpP vqrle PAPD_ECOLI : 92- 94: mvrls TtP diskl PAPD_ECOLI : 143- 145: paaik TrP nevwq PRSD_ECOLI : 20- 22: paaik TrP nevwq PSAB_YERPE : 86- 88: kdedk TsP apfiv PSAB_YERPE : 94- 96: apfiv TpP lfrld SEFB_SALEN : 90- 92: apfiv TpP ilkve YCBF_ECOLI : 8- 10: qgvql TnP tpyyi YEHC_ECOLI : 88- 90: vpfml TpP vakig YHCA_ECOLI : 71- 73: irlip TqP virve YHCA_ECOLI : 92- 94: fllqa TvP lqsee YHCA_ECOLI : 172- 174: tlqfk TlP sgktg YRAI_ECOLI : 75- 77: apfii TpP lfrle YRAI_ECOLI : 227- 229: ssgte TrP lq D 4: 7.8401 70( 25) K-x(2,3)-L Occurences: 70(25) AGGD_ECOLI : 33- 37: venna KvfsL hlgat CAFM_YERPE : 114- 117: vfprd Kes-L kwlcv CAFM_YERPE : 254- 258: drlys KnvtL CLPE_ECOLI : 49- 52: ifrgd Kda-L titvt CLPE_ECOLI : 140- 143: vavrt Klk-L fyrpk CLPE_ECOLI : 221- 225: kgnvv KvdsL ndyge CS31_ECOLI : 120- 124: rgipp KqgdL wanne CS31_ECOLI : 146- 149: intci Kli-L rphnl CS31_ECOLI : 208- 212: gpyeq KlytL pskis ECPD_ECOLI : 172- 175: sgseg Kas-L rvtnp ECPD_ECOLI : 215- 219: sdevm KvngL ngkan FAEE_ECOLI : 49- 52: ifrgd Kda-L titvt FAEE_ECOLI : 140- 143: valrt Klk-L fyrpk FAEE_ECOLI : 148- 151: lfyrp Kal-L egrkg FAEE_ECOLI : 221- 225: kgnvv KvdsL ndyge FANE_ECOLI : 176- 180: vking KsidL nsdak FANE_ECOLI : 196- 199: fspfs Kvc-L gnvnt FIMB_BORPE : 92- 96: rvdpg KgqtL riffn FIMC_ECOLI : 52- 56: ypagq KqeqL avtnn FIMC_ECOLI : 97- 101: amkgk KentL rilda FIMC_ECOLI : 131- 134: ipsmd Ksk-L tentl FIMC_ECOLI : 155- 158: yyrpa Kla-L ppdqa FIMC_SALTY : 41- 45: ypsaa KqtsL aisns FIMC_SALTY : 125- 128: shieg Knv-L qlail FOCC_ECOLI : 37- 41: ypegq KqvqL avtnn FOCC_ECOLI : 49- 53: tnndd KssyL iqswi FOCC_ECOLI : 82- 86: smqgk KentL riida HFB1_HAEIN : 7- 10: gktmf Kkt-L lffta HFB1_HAEIN : 7- 11: gktmf KktlL fftal HFB1_HAEIN : 8- 11: ktmfk Ktl-L fftal HFB1_HAEIN : 154- 157: fyrpa Kls-L dpfda HFB1_HAEIN : 173- 176: fkatp Kgv-L vdnqt HFB1_HAEIN : 223- 226: sgdkl Kwv-L vndyg HFB2_HAEIN : 7- 10: gktmf Kkt-L lffta HFB2_HAEIN : 7- 11: gktmf KktlL fftal HFB2_HAEIN : 8- 11: ktmfk Ktl-L fftal HFB2_HAEIN : 223- 226: sgdkl Kwv-L vndyg LPFB_SALTY : 40- 44: ydgsr KeasL tvnnk LPFB_SALTY : 85- 89: klspt KnnvL rivnt LPFB_SALTY : 123- 126: edaea Knv-L qiavr LPFB_SALTY : 195- 198: gmvpa Kgs-L nielp MRKB_KLEPN : 2- 6: m KriaL ffcfi MRKB_KLEPN : 102- 105: glakd Ket-L wwlnl MRKB_KLEPN : 154- 157: daaae Kla-L sangs MRKB_KLEPN : 210- 214: ssavs KgetL tvnni MYFB_YEREN : 59- 63: plssv KgvsL svtnp MYFB_YEREN : 207- 211: fymnf KsvsL gnkni MYFB_YEREN : 214- 218: vslgn KnikL ssagn NFAE_ECOLI : 156- 159: ekkad Kvs-L nvqls PAPD_ECOLI : 4- 7: mir Kki-L maaip PAPD_ECOLI : 37- 41: fdgse KsmtL disnd PAPD_ECOLI : 120- 124: pprse KanvL qialq PAPD_ECOLI : 131- 134: ialqt Kik-L fyrpa PRSD_ECOLI : 8- 11: ialqt Kik-L fyrpa PSAB_YERPE : 189- 193: ltwry KgnyL evnnp PSAB_YERPE : 214- 217: rigde Kin-L sdlgs SEFB_SALEN : 38- 42: plltq KyygL rlgtt SEFB_SALEN : 163- 167: liyrp KtidL ttmei SEFB_SALEN : 175- 178: meiad Klk-L erkgn SEFB_SALEN : 201- 205: niani KsgnL sfnip SEFB_SALEN : 229- 232: ggvhs Kit-L tildd YCBF_ECOLI : 67- 71: glsak KeqnL p YEHC_ECOLI : 15- 19: nlrgi KmkgL lslli YEHC_ECOLI : 17- 20: rgikm Kgl-L sllif YEHC_ECOLI : 136- 139: peqeg Kna-L kfamq YEHC_ECOLI : 165- 168: nkatf Kkl-L vnrsg YHCA_ECOLI : 64- 68: lpesn KsirL iptqp YHCA_ECOLI : 183- 187: tgain KtyfL phtst YRAI_ECOLI : 40- 44: ydasr KeaaL pvank YRAI_ECOLI : 102- 105: nlpen Kes-L fyinv YRAI_ECOLI : 183- 186: glavd Ktd-L tskie YRAI_ECOLI : 199- 203: apgeh KqlpL pasgg E 5: 7.8401 54( 25) K-x(3,4)-N Occurences: 54(25) AGGD_ECOLI : 143- 147: gkksd Katm-N iqvsv AGGD_ECOLI : 184- 189: qkvgn KlkgvN ptpfy CAFM_YERPE : 140- 144: ddatn Kqkf-N pdkdv CAFM_YERPE : 189- 194: kvdgg KliaeN pspfy CLPE_ECOLI : 91- 95: tpsff Kvkp-N gqqtl CLPE_ECOLI : 221- 226: kgnvv KvdslN dygel CS31_ECOLI : 156- 160: phnlp Kldi-N segqi ECPD_ECOLI : 215- 220: sdevm KvnglN gkans FAEE_ECOLI : 91- 95: tpsff Kvkp-N gqqtl FAEE_ECOLI : 193- 198: dgngk KiatdN gttqk FAEE_ECOLI : 221- 226: kgnvv KvdslN dygel FANE_ECOLI : 176- 181: vking KsidlN sdakn FANE_ECOLI : 196- 201: fspfs KvclgN vntsg FIMB_BORPE : 152- 157: lfyrp KglsgN pltaa FIMB_BORPE : 168- 172: adltf Krkp-N gvlev FIMC_ECOLI : 94- 99: plfam KgkkeN tlril FIMC_ECOLI : 133- 137: smdks Klte-N tlqla FIMC_SALTY : 185- 189: isvga Kkid-N vmiap FOCC_ECOLI : 118- 122: amdka Ktge-N ylqfa FOCC_ECOLI : 181- 185: lkagn Ksle-N tmvpp FOCC_ECOLI : 193- 197: vppqg Kvtv-N ipggy HFB1_HAEIN : 49- 53: knviv Klen-N ddsaa HFB1_HAEIN : 195- 199: llhqn Kpak-N vkmva HFB1_HAEIN : 223- 228: sgdkl KwvlvN dygad HFB2_HAEIN : 49- 53: knviv Klen-N ddsaa HFB2_HAEIN : 195- 199: llhqn Kpak-N vkmva HFB2_HAEIN : 223- 228: sgdkl KwvlvN dygad LPFB_SALTY : 178- 182: nltfn Kfya-N grdie LPFB_SALTY : 195- 199: gmvpa Kgsl-N ielpa LPFB_SALTY : 213- 218: kvsev KyniiN dfgta MRKB_KLEPN : 91- 95: qtlri Klgs-N aglak MRKB_KLEPN : 121- 126: veasq KnegqN ilqla MYFB_YEREN : 4- 8: mky Kfsh-N fisyn NFAE_ECOLI : 156- 160: ekkad Kvsl-N vqlsv PAPD_ECOLI : 142- 146: rpaai Ktrp-N evwqd PAPD_ECOLI : 203- 208: seqtv KsanyN tpyls PRSD_ECOLI : 19- 23: rpaai Ktrp-N evwqd PSAB_YERPE : 223- 228: sdlgs KdeikN gsyvp SEFB_SALEN : 95- 99: tppil Kves-N artrl YCBF_ECOLI : 25- 29: vsvng Kals-N vgvvp YCBF_ECOLI : 66- 70: gglsa Kkeq-N lp YEHC_ECOLI : 93- 97: tppva Kiga-N sgqqv YEHC_ECOLI : 105- 109: qqvki Kimp-N klptn YEHC_ECOLI : 110- 114: kimpn Klpt-N kesif YEHC_ECOLI : 140- 145: gknal KfamqN riklf YEHC_ECOLI : 165- 170: nkatf KkllvN rsgng YEHC_ECOLI : 166- 170: katfk Kllv-N rsgng YEHC_ECOLI : 179- 184: nglvi KndsaN wvtis YEHC_ECOLI : 216- 221: qsvnv KsnnaN nwhlt YHCA_ECOLI : 177- 182: tlpsg KtgaiN ktyfl YRAI_ECOLI : 93- 97: slrii Ktad-N lpenk YRAI_ECOLI : 118- 123: ipakk KsddvN anelt YRAI_ECOLI : 145- 149: rpahl Kgrv-N dawks YRAI_ECOLI : 212- 217: ggknv KwaaiN dyggs F 6: 7.8401 70( 25) A-x(1,2)-K Occurences: 70(25) AGGD_ECOLI : 163- 166: lfvrp AdvK gqpdd AGGD_ECOLI : 173- 175: qpddv Ag-K ikwqk CAFM_YERPE : 31- 33: pdikf As-K eygvt CAFM_YERPE : 137- 140: iwvdd AtnK qkfnp CAFM_YERPE : 178- 180: tpiqf Ae-K lswkv CLPE_ECOLI : 201- 203: tdnet Aq-K llmfm CLPE_ECOLI : 260- 262: npsdk Ad-K k CLPE_ECOLI : 260- 263: npsdk AdkK CS31_ECOLI : 176- 179: dgnlv AknK tpyyf CS31_ECOLI : 195- 197: sfngk Al-K tpgtl ECPD_ECOLI : 125- 127: ppkpd Ae-K vanqs ECPD_ECOLI : 161- 163: seapl Al-K wfwsg ECPD_ECOLI : 194- 197: sgdle AsgK rypid FAEE_ECOLI : 246- 248: paape Aa-K aekad FAEE_ECOLI : 249- 251: peaak Ae-K adtae FAEE_ECOLI : 255- 258: ekadt AeqK FANE_ECOLI : 111- 113: qeipp Ap-K gdggs FANE_ECOLI : 135- 137: iyrpi Al-K ngrde FANE_ECOLI : 184- 187: dlnsd AknK mgvfs FIMB_BORPE : 68- 71: iddgn AeaK pdevq FIMC_ECOLI : 49- 52: rviyp AgqK qeqla FIMC_ECOLI : 92- 94: tpplf Am-K gkken FIMC_ECOLI : 163- 166: lppdq AaeK lrfrr FIMC_ECOLI : 164- 166: ppdqa Ae-K lrfrr FIMC_SALTY : 39- 41: viyps Aa-K qtsla FIMC_SALTY : 66- 69: wienn AgqK ektfi FIMC_SALTY : 184- 186: nisvg Ak-K idnvm FIMC_SALTY : 193- 195: dnvmi Ap-K sdmqi FOCC_ECOLI : 61- 64: swien AegK kdarf FOCC_ECOLI : 113- 116: vkaip AmdK aktge FOCC_ECOLI : 148- 151: ippeq ApgK leftr FOCC_ECOLI : 178- 181: vtdlk AgnK slent HFB1_HAEIN : 41- 44: rviyp AgqK nvivk HFB1_HAEIN : 71- 74: ngnpn AdpK ytktp HFB1_HAEIN : 162- 164: ldpfd Am-K kvvfk HFB1_HAEIN : 162- 165: ldpfd AmkK vvfka HFB1_HAEIN : 170- 173: kvvfk AtpK gvlvd HFB2_HAEIN : 41- 44: rviyp AgqK nvivk HFB2_HAEIN : 71- 74: ngnpn AdpK ytktp HFB2_HAEIN : 162- 164: mdsrd Am-K kvvfk HFB2_HAEIN : 162- 165: mdsrd AmkK vvfka LPFB_SALTY : 120- 123: aksed AeaK nvlqi LPFB_SALTY : 141- 144: lfyrp AalK ansmd LPFB_SALTY : 142- 144: fyrpa Al-K ansmd MRKB_KLEPN : 99- 102: snagl AkdK etlww MRKB_KLEPN : 118- 121: ippve AsqK negqn MRKB_KLEPN : 151- 154: gnrda AaeK lalsa MRKB_KLEPN : 152- 154: nrdaa Ae-K lalsa MRKB_KLEPN : 207- 210: ialss AvsK getlt MRKB_KLEPN : 227- 229: ygadv Av-K vtvk MYFB_YEREN : 182- 184: kpeem Ag-K liwhr NFAE_ECOLI : 145- 148: eddrw AegK dgekk NFAE_ECOLI : 154- 156: dgekk Ad-K vslnv NFAE_ECOLI : 177- 179: fvrpp Av-K grpdd NFAE_ECOLI : 186- 188: rpddv Ag-K vewqr PAPD_ECOLI : 139- 142: lfyrp AaiK trpne PAPD_ECOLI : 140- 142: fyrpa Ai-K trpne PRSD_ECOLI : 16- 19: lfyrp AaiK trpne PRSD_ECOLI : 17- 19: fyrpa Ai-K trpne PSAB_YERPE : 8- 10: nlffs Ay-K kvfsy PSAB_YERPE : 8- 11: nlffs AykK vfsyi SEFB_SALEN : 173- 175: ttmei Ad-K lkler SEFB_SALEN : 198- 201: syvni AniK sgnls YCBF_ECOLI : 65- 67: yggls Ak-K eqnlp YEHC_ECOLI : 46- 49: riiyp AenK evmvq YEHC_ECOLI : 138- 140: qegkn Al-K famqn YEHC_ECOLI : 162- 165: apvnk AtfK kllvn YHCA_ECOLI : 180- 183: sgktg AinK tyflp YRAI_ECOLI : 37- 40: rviyd AsrK eaalp YRAI_ECOLI : 47- 49: aalpv An-K gaetp YRAI_ECOLI : 115- 117: vraip Ak-K ksddv YRAI_ECOLI : 115- 118: vraip AkkK sddvn YRAI_ECOLI : 142- 145: mfyrp AhlK grvnd YRAI_ECOLI : 151- 153: grvnd Aw-K slefk YRAI_ECOLI : 180- 183: vfagl AvdK tdlts G 7: 7.8401 65( 25) S-x(1,2)-K Occurences: 65(25) AGGD_ECOLI : 137- 139: akeev Sg-K ksdka AGGD_ECOLI : 137- 140: akeev SgkK sdkat AGGD_ECOLI : 141- 143: vsgkk Sd-K atmni AGGD_ECOLI : 154- 157: qvsvs SciK lfvrp CAFM_YERPE : 56- 58: agvmv Sv-K ntqdy CAFM_YERPE : 116- 118: prdke Sl-K wlcvk CAFM_YERPE : 182- 184: faekl Sw-K vdggk CLPE_ECOLI : 88- 91: fvvtp SffK vkpng CLPE_ECOLI : 245- 248: ktpts SgqK asdsl CLPE_ECOLI : 257- 259: slvnp Sd-K adkk CS31_ECOLI : 108- 110: pkdre Sl-K tlcvr CS31_ECOLI : 234- 237: dlges SetK kfni ECPD_ECOLI : 38- 41: rviyk SdqK svnvr ECPD_ECOLI : 103- 106: ytast SlpK drera ECPD_ECOLI : 169- 172: wfwsg SegK aslrv ECPD_ECOLI : 195- 197: gdlea Sg-K rypid ECPD_ECOLI : 225- 227: ngkan Sa-K vhfya FAEE_ECOLI : 88- 91: fvvtp SffK vkpng FANE_ECOLI : 45- 48: nihne SehK yggqv FANE_ECOLI : 169- 172: yyfai SdvK ingks FANE_ECOLI : 182- 185: sidln SdaK nkmgv FIMB_BORPE : 143- 146: qltir SrlK lfyrp FIMC_ECOLI : 2- 4: m Sn-K nvnvr FIMC_ECOLI : 128- 131: vkaip SmdK sklte FIMC_ECOLI : 145- 148: qlaii SriK lyyrp FIMC_ECOLI : 209- 212: ppmge StvK lpsda FIMC_SALTY : 4- 6: mln Si-K vgfiv FIMC_SALTY : 38- 41: rviyp SaaK qtsla FIMC_SALTY : 82- 85: pplfv SepK sentl FIMC_SALTY : 116- 119: vkaip SvdK shieg FIMC_SALTY : 134- 137: qlail SriK lfvrp FOCC_ECOLI : 130- 133: qfaiv SriK llyrp HFB1_HAEIN : 144- 147: qiair SrlK lfyrp HFB1_HAEIN : 218- 221: akgvr SgdK lkwvl HFB2_HAEIN : 144- 147: qiair SrlK lfyrp HFB2_HAEIN : 218- 221: akgvr SgdK lkwvl LPFB_SALTY : 38- 40: viydg Sr-K easlt LPFB_SALTY : 82- 85: plfkl SptK nnvlr LPFB_SALTY : 210- 213: gtgkv SevK yniin MRKB_KLEPN : 119- 121: ppvea Sq-K negqn MRKB_KLEPN : 134- 137: qlair SrfK fiyrp MYFB_YEREN : 38- 41: mgfnt SqhK fsvrt MYFB_YEREN : 56- 59: iiypl SsvK gvsls MYFB_YEREN : 57- 59: iypls Sv-K gvsls NFAE_ECOLI : 167- 170: qlsvs SciK lfvrp PAPD_ECOLI : 35- 37: avfdg Se-K smtld PAPD_ECOLI : 118- 120: eippr Se-K anvlq PAPD_ECOLI : 180- 182: iglgg Se-K qaeeg PAPD_ECOLI : 234- 236: ngsrc Sv-K kek PAPD_ECOLI : 234- 237: ngsrc SvkK ek PRSD_ECOLI : 57- 59: iglgg Se-K qaeeg PRSD_ECOLI : 110- 112: ngsrc Sv-K kek PRSD_ECOLI : 110- 113: ngsrc SvkK ek PSAB_YERPE : 7- 10: knlff SayK kvfsy PSAB_YERPE : 57- 60: viyps SstK gvsvs PSAB_YERPE : 58- 60: iypss St-K gvsvs SEFB_SALEN : 25- 28: lpias SesK kieqp SEFB_SALEN : 27- 29: iasse Sk-K ieqpl SEFB_SALEN : 82- 84: ynddk Ss-K apfiv SEFB_SALEN : 136- 139: lndne SnnK nnitt SEFB_SALEN : 154- 157: nvvtn SciK liyrp YCBF_ECOLI : 64- 66: dyggl Sa-K keqnl YCBF_ECOLI : 64- 67: dyggl SakK eqnlp YEHC_ECOLI : 189- 192: nwvti SdvK annvk YEHC_ECOLI : 236- 238: hgnyi Sd-K i YHCA_ECOLI : 62- 64: vdlpe Sn-K sirli YHCA_ECOLI : 175- 177: fktlp Sg-K tgain YRAI_ECOLI : 38- 40: viyda Sr-K eaalp YRAI_ECOLI : 206- 209: lplpa SggK nvkwa H 8: 7.8401 68( 25) L-x(3,4)-K Occurences: 68(25) AGGD_ECOLI : 72- 77: vqanv LsedqK niapf AGGD_ECOLI : 99- 103: lqssr Lriv-K tegaf AGGD_ECOLI : 200- 205: mdiae LrvgeK eitet CAFM_YERPE : 205- 210: mnige LtfggK sipsh CLPE_ECOLI : 109- 113: masdh Lpkd-K esvyw CLPE_ECOLI : 143- 148: rtklk LfyrpK alieg CLPE_ECOLI : 150- 155: yrpka LiegrK gaeeg CLPE_ECOLI : 187- 192: aigsl LdgngK riatd CS31_ECOLI : 60- 64: qispi Liqs-K vmdeg CS31_ECOLI : 174- 179: irdgn LvaknK tpyyf ECPD_ECOLI : 117- 122: fwfnv LevppK pdaek ECPD_ECOLI : 192- 197: fssgd LeasgK rypid FAEE_ECOLI : 109- 113: masdh Lpkd-K esvyw FAEE_ECOLI : 137- 142: giava LrtklK lfyrp FAEE_ECOLI : 143- 148: rtklk LfyrpK alleg FAEE_ECOLI : 150- 155: yrpka LlegrK gaeeg FAEE_ECOLI : 151- 155: rpkal Legr-K gaeeg FAEE_ECOLI : 187- 192: aigsl LdgngK kiatd FANE_ECOLI : 76- 81: pmvfk LnpkqK qivri FANE_ECOLI : 180- 185: gksid LnsdaK nkmgv FIMB_BORPE : 122- 127: fwlnv LevppK atpee FIMB_BORPE : 147- 152: rsrlk LfyrpK glsgn FIMB_BORPE : 165- 170: taaad LtfkrK pngvl FIMC_ECOLI : 90- 94: ivtpp Lfam-K gkken FIMC_SALTY : 2- 6: m Lnsi-K vgfiv FIMC_SALTY : 133- 137: lqlai Lsri-K lfvrp FOCC_ECOLI : 176- 181: ltvtd LkagnK slent FOCC_ECOLI : 218- 223: ndyga LteqvK gvvk HFB1_HAEIN : 120- 125: fyfnl LdippK pdaef HFB1_HAEIN : 190- 195: mnyig LlhqnK paknv HFB1_HAEIN : 191- 195: nyigl Lhqn-K paknv HFB2_HAEIN : 120- 125: fyfnl LdippK pdaaf HFB2_HAEIN : 190- 195: mnyig LlhqnK paknv HFB2_HAEIN : 191- 195: nyigl Lhqn-K paknv LPFB_SALTY : 44- 49: rkeas LtvnnK sttde LPFB_SALTY : 81- 85: pplfk Lspt-K nnvlr LPFB_SALTY : 174- 178: psafn Ltfn-K fyang MRKB_KLEPN : 98- 102: gsnag Lakd-K etlww MYFB_YEREN : 55- 59: riiyp Lssv-K gvsls NFAE_ECOLI : 85- 90: vqsev LsedqK spapf NFAE_ECOLI : 213- 218: inlst LtvggK evker PAPD_ECOLI : 80- 85: ppvqr LepgaK smvrl PAPD_ECOLI : 128- 133: vlqia LqtkiK lfyrp PAPD_ECOLI : 153- 157: vwqdq Liln-K vsggy PAPD_ECOLI : 177- 182: vtvig LggseK qaeeg PRSD_ECOLI : 5- 10: lqia LqtkiK lfyrp PRSD_ECOLI : 30- 34: vwqdq Liln-K vsggy PRSD_ECOLI : 54- 59: vtvig LggseK qaeeg PSAB_YERPE : 42- 46: nttkh Lftv-K igttr PSAB_YERPE : 167- 172: tcikl LfrpdK vkgdp PSAB_YERPE : 184- 189: dsads LtwryK gnyle SEFB_SALEN : 34- 38: kieqp Lltq-K yyglr SEFB_SALEN : 158- 163: nscik LiyrpK tidlt SEFB_SALEN : 176- 181: eiadk LklerK gnsiv YCBF_ECOLI : 63- 67: ndygg Lsak-K eqnlp YEHC_ECOLI : 11- 15: wrpfn Lrgi-K mkgll YEHC_ECOLI : 76- 80: dgdts Lppe-K iqvpf YEHC_ECOLI : 111- 115: impnk Lptn-K esify YHCA_ECOLI : 29- 34: petsv LlvdeK rgeas YHCA_ECOLI : 30- 34: etsvl Lvde-K rgeas YHCA_ECOLI : 59- 64: ttivd LpesnK sirli YHCA_ECOLI : 145- 149: etwkf Lewr-K ngdqi YHCA_ECOLI : 173- 177: lqfkt Lpsg-K tgain YRAI_ECOLI : 44- 49: rkeaa LpvanK gaetp YRAI_ECOLI : 89- 93: gddss Lrii-K tadnl YRAI_ECOLI : 98- 102: ktadn Lpen-K eslfy YRAI_ECOLI : 127- 132: vnane LtlvfK trikm YRAI_ECOLI : 179- 183: vvfag Lavd-K tdlts I 9: 7.8401 64( 25) N-x(3,4)-L Occurences: 64(25) AGGD_ECOLI : 62- 66: vineh Nypi-L vqanv CAFM_YERPE : 4- 9: mil NrlstL giitf CAFM_YERPE : 158- 163: vqfai NncikL lvrpn CAFM_YERPE : 159- 163: qfain Ncik-L lvrpn CAFM_YERPE : 159- 164: qfain NciklL vrpne CAFM_YERPE : 201- 205: spfym Nige-L tfggk CAFM_YERPE : 243- 248: swrii NdqggL drlys CLPE_ECOLI : 95- 100: fkvkp NgqqtL riima CLPE_ECOLI : 226- 231: kvdsl NdygeL qtwti CS31_ECOLI : 45- 49: yhldg Nges-L rvknp CS31_ECOLI : 142- 147: lnvsi NtcikL ilrph CS31_ECOLI : 153- 157: ilrph Nlpk-L dinse CS31_ECOLI : 192- 196: vnasf Ngka-L ktpgt ECPD_ECOLI : 52- 56: lenkg Nnpl-L vqswl ECPD_ECOLI : 130- 134: aekva Nqsl-L qlafr FAEE_ECOLI : 95- 100: fkvkp NgqqtL riima FAEE_ECOLI : 226- 231: kvdsl NdygeL qtwti FANE_ECOLI : 18- 23: fssya NaaftL nstry FANE_ECOLI : 88- 93: ivriv NindnL pkdre FANE_ECOLI : 124- 129: lslai NnrvkL iyrpi FANE_ECOLI : 125- 129: slain Nrvk-L iyrpi FANE_ECOLI : 145- 149: rdeae Nnik-L insgt FIMB_BORPE : 186- 190: tpyyv Nlqk-L evgen FIMC_ECOLI : 64- 68: tnnde Nsty-L iqswv FIMC_ECOLI : 99- 104: kgkke NtlriL datnn FIMC_ECOLI : 137- 141: sklte Ntlq-L aiisr FIMC_ECOLI : 174- 178: frrsa Nslt-L inptp FIMC_ECOLI : 227- 232: tyrti NdygaL tpkmt FIMC_SALTY : 126- 130: hiegk Nvlq-L ailsr FIMC_SALTY : 216- 221: tfqsv NdygaL tsatt FOCC_ECOLI : 158- 163: eftre NggltL fnptp FOCC_ECOLI : 213- 218: tykti NdygaL teqvk HFB1_HAEIN : 45- 50: pagqk NvivkL enndd HFB1_HAEIN : 186- 190: tpyym Nyig-L lhqnk HFB1_HAEIN : 186- 191: tpyym NyiglL hqnkp HFB2_HAEIN : 45- 50: pagqk NvivkL enndd HFB2_HAEIN : 186- 190: tpyym Nyig-L lhqnk HFB2_HAEIN : 186- 191: tpyym NyiglL hqnkp LPFB_SALTY : 2- 6: m Nrsr-L iscta LPFB_SALTY : 93- 98: vlriv NttntL pqdre MRKB_KLEPN : 126- 130: knegq Nilq-L airsr MRKB_KLEPN : 160- 164: lalsa Ngss-L svsnp MRKB_KLEPN : 182- 187: srisr NggkaL nsktv MYFB_YEREN : 154- 158: nmqdv Nlni-L lsvgt MYFB_YEREN : 154- 159: nmqdv NlnilL svgtc MYFB_YEREN : 190- 194: liwhr Ngqq-L qvnnp MYFB_YEREN : 213- 218: svslg NknikL ssagn NFAE_ECOLI : 209- 213: tpfyi Nlst-L tvggk PAPD_ECOLI : 45- 50: tldis NdnkqL pylaq PAPD_ECOLI : 208- 212: ksany Ntpy-L syind PRSD_ECOLI : 84- 88: vnrny Ntpy-L syind PSAB_YERPE : 37- 42: qdvvv NttkhL ftvki PSAB_YERPE : 204- 208: tpfym Nfys-L rigde PSAB_YERPE : 216- 220: gdeki Nlsd-L gskde SEFB_SALEN : 99- 104: lkves NartrL kvipt SEFB_SALEN : 116- 120: nlfnk Nees-L ywlcv SEFB_SALEN : 141- 146: snnkn NittnL nvnvv SEFB_SALEN : 153- 158: vnvvt NscikL iyrpk YCBF_ECOLI : 23- 27: iqvsv Ngka-L snvgv YCBF_ECOLI : 58- 63: awrai NdyggL sakke YEHC_ECOLI : 60- 64: lmnqg Nrss-L lqawi YEHC_ECOLI : 60- 65: lmnqg NrsslL qawid YEHC_ECOLI : 145- 149: kfamq Nrik-L fyrpa YEHC_ECOLI : 221- 225: ksnna Nnwh-L tiidd YHCA_ECOLI : 63- 68: dlpes NksirL iptqp YHCA_ECOLI : 182- 187: ktgai NktyfL phtst YRAI_ECOLI : 101- 105: dnlpe Nkes-L fyinv YRAI_ECOLI : 123- 127: ksddv Nane-L tlvfk YRAI_ECOLI : 125- 129: ddvna Nelt-L vfktr J 10: 7.8401 69( 25) I-x(0,1)-N Occurences: 69(25) AGGD_ECOLI : 58- 59: etlav I-N ehnyp CAFM_YERPE : 2- 4: m IlN rlstl CAFM_YERPE : 157- 158: fvqfa I-N ncikl CAFM_YERPE : 157- 159: fvqfa InN cikll CAFM_YERPE : 241- 243: nvswr IiN dqggl CAFM_YERPE : 242- 243: vswri I-N dqggl CLPE_ECOLI : 236- 237: lqtwt I-N qkktp CS31_ECOLI : 141- 142: klnvs I-N tcikl CS31_ECOLI : 159- 160: lpkld I-N segqi CS31_ECOLI : 186- 188: pyyft IvN asfng ECPD_ECOLI : 233- 234: vhfya I-N dfgga FAEE_ECOLI : 236- 237: lqtwt I-N kkkpa FANE_ECOLI : 29- 31: nstry IyN egqqs FANE_ECOLI : 41- 43: svsvn IhN esehk FANE_ECOLI : 55- 57: ggqvw IdN idkng FANE_ECOLI : 86- 88: kqivr IvN indnl FANE_ECOLI : 89- 90: vrivn I-N dnlpk FANE_ECOLI : 123- 124: slsla I-N nrvkl FANE_ECOLI : 123- 125: slsla InN rvkli FANE_ECOLI : 150- 151: nnikl I-N sgtds FANE_ECOLI : 173- 174: isdvk I-N gksid FIMB_BORPE : 37- 39: tgtrv IyN agspe FIMC_ECOLI : 179- 180: nsltl I-N ptpyy FIMC_ECOLI : 226- 227: ityrt I-N dygal FIMC_SALTY : 47- 49: qtsla IsN sdtqe FIMC_SALTY : 62- 64: lvnsw IeN nagqk FIMC_SALTY : 167- 169: gnhlk ItN psayy FIMC_SALTY : 187- 189: vgakk IdN vmiap FOCC_ECOLI : 58- 60: liqsw IeN aegkk FOCC_ECOLI : 212- 213: itykt I-N dygal HFB1_HAEIN : 64- 66: lvqaw IdN gnpna HFB2_HAEIN : 64- 66: lvqaw IdN gnpna LPFB_SALTY : 91- 93: nnvlr IvN ttntl LPFB_SALTY : 108- 109: esvyw I-N vkaip LPFB_SALTY : 216- 218: evkyn IiN dfgta LPFB_SALTY : 217- 218: vkyni I-N dfgta MRKB_KLEPN : 22- 24: hanni IvN gtrfi MRKB_KLEPN : 219- 220: ltvnn I-N dygad MYFB_YEREN : 248- 249: erpae I-N wqiin MYFB_YEREN : 252- 254: einwq IiN dlgse MYFB_YEREN : 253- 254: inwqi I-N dlgse NFAE_ECOLI : 71- 72: etltv I-N dqdyp NFAE_ECOLI : 208- 209: ptpfy I-N lstlt PAPD_ECOLI : 43- 45: smtld IsN dnkql PAPD_ECOLI : 58- 60: laqaw IeN enqek PAPD_ECOLI : 154- 156: wqdql IlN kvsgg PAPD_ECOLI : 164- 166: sggyr IeN ptpyy PAPD_ECOLI : 215- 216: pylsy I-N dyggr PAPD_ECOLI : 227- 229: pvlsf IcN gsrcs PRSD_ECOLI : 31- 33: wqdql IlN kvsgg PRSD_ECOLI : 41- 43: sggyr IeN ptpyy PRSD_ECOLI : 91- 92: pylsy I-N dyggr PRSD_ECOLI : 103- 105: pvlsf IcN gsrcs PSAB_YERPE : 215- 216: igdek I-N lsdlg PSAB_YERPE : 226- 228: gskde IkN gsyvp PSAB_YERPE : 258- 259: vfwqv I-N dnggv SEFB_SALEN : 3- 5: my IlN kfirr SEFB_SALEN : 62- 64: stsfw ImN ekeyp SEFB_SALEN : 187- 189: gnsiv IkN ptssy SEFB_SALEN : 197- 199: ssyvn IaN iksgn SEFB_SALEN : 209- 211: nlsfn IpN gyiep YCBF_ECOLI : 15- 16: ptpyy I-N liqvs YCBF_ECOLI : 57- 58: vawra I-N dyggl YEHC_ECOLI : 178- 180: gnglv IkN dsanw YHCA_ECOLI : 40- 41: rgeas I-N ikntd YHCA_ECOLI : 42- 44: easin IkN tddhp YHCA_ECOLI : 156- 158: gdqie IsN psnyv YHCA_ECOLI : 181- 182: gktga I-N ktyfl YRAI_ECOLI : 108- 109: eslfy I-N vraip YRAI_ECOLI : 166- 168: dhsln IyN pteyy YRAI_ECOLI : 216- 217: vkwaa I-N dyggs K 11: 7.8401 63( 25) S-x(3,4)-A Occurences: 63(25) AGGD_ECOLI : 8- 13: irriv StiaiA lsvft AGGD_ECOLI : 15- 20: iaial SvftfA haqsf AGGD_ECOLI : 36- 41: nakvf SlhlgA trmiy AGGD_ECOLI : 51- 56: ykpns SgetlA vineh CAFM_YERPE : 100- 104: akqqn Slri-A qaggv CLPE_ECOLI : 2- 6: m Skrn-A vttff CLPE_ECOLI : 131- 136: paleg SgiavA vrtkl CLPE_ECOLI : 244- 249: kktpt SsgqkA sdslv CLPE_ECOLI : 245- 249: ktpts Sgqk-A sdslv CS31_ECOLI : 17- 21: slfpc Sniy-A nnitt CS31_ECOLI : 70- 74: vmdeg Skdn-A dfivt CS31_ECOLI : 190- 195: tivna SfngkA lktpg ECPD_ECOLI : 20- 25: tcmaf SsssiA divis ECPD_ECOLI : 21- 25: cmafs Sssi-A divis ECPD_ECOLI : 84- 88: rtppv Srid-A krgqt ECPD_ECOLI : 132- 137: kvanq SllqlA frtri ECPD_ECOLI : 156- 161: lkgnp SeaplA lkwfw ECPD_ECOLI : 169- 173: wfwsg Segk-A slrvt ECPD_ECOLI : 189- 194: yvsfs SgdleA sgkry FAEE_ECOLI : 2- 6: m Skrn-A vttff FAEE_ECOLI : 131- 136: paleg SgiavA lrtkl FANE_ECOLI : 14- 19: alcvf SsyanA aftln FANE_ECOLI : 15- 19: lcvfs Syan-A aftln FANE_ECOLI : 15- 20: lcvfs SyanaA ftlns FANE_ECOLI : 118- 122: kgdgg Slsl-A innrv FIMB_BORPE : 20- 24: aamla Slap-A ardsl FIMB_BORPE : 20- 25: aamla SlapaA rdslv FIMB_BORPE : 50- 55: ttvkm SnegqA palmq FIMB_BORPE : 223- 228: gtgak SvqywA iddfg FIMC_ECOLI : 71- 76: tyliq SwvenA dgvkd FIMC_SALTY : 18- 23: ltlft SlnvqA aggia FIMC_SALTY : 223- 227: ygalt Satt-A slg FOCC_ECOLI : 19- 24: fyipq SyagvA lgatr FOCC_ECOLI : 56- 61: syliq SwienA egkkd HFB1_HAEIN : 136- 141: lakhg SfmqiA irsrl HFB2_HAEIN : 136- 141: lakhg SfmqiA irsrl LPFB_SALTY : 38- 42: viydg Srke-A sltvn LPFB_SALTY : 59- 64: efliq SwiddA ngnkk LPFB_SALTY : 117- 122: aipak SedaeA knvlq MRKB_KLEPN : 13- 18: fcfif SfaahA nniiv MRKB_KLEPN : 78- 82: itppi Srvd-A ksgqt MRKB_KLEPN : 94- 99: riklg SnaglA kdket MRKB_KLEPN : 198- 203: mfapq SsqtiA lssav MRKB_KLEPN : 199- 203: fapqs Sqti-A lssav MYFB_YEREN : 260- 265: dlgse SqvfkA ni NFAE_ECOLI : 24- 29: vtgll SagayA aggeg NFAE_ECOLI : 49- 54: narvf SlhlgA trvvy PAPD_ECOLI : 17- 21: plfvi Sgad-A avsld PAPD_ECOLI : 17- 22: plfvi SgadaA vsldr PAPD_ECOLI : 180- 184: iglgg Sekq-A eegef PRSD_ECOLI : 57- 61: iglgg Sekq-A eegef PSAB_YERPE : 25- 29: vifmv Slpy-A ysqdv PSAB_YERPE : 63- 67: stkgv Svsv-A npqdy SEFB_SALEN : 193- 198: knpts SyvniA niksg YCBF_ECOLI : 21- 26: nliqv SvngkA lsnvg YCBF_ECOLI : 42- 46: sqrqt Swcq-A iapch YEHC_ECOLI : 26- 31: sllif SmvlpA hagiv YEHC_ECOLI : 62- 67: nqgnr SsllqA widdg YEHC_ECOLI : 63- 67: qgnrs Sllq-A widdg YEHC_ECOLI : 189- 193: nwvti Sdvk-A nnvkv YHCA_ECOLI : 14- 19: vfitt SmntlA tgmvp YHCA_ECOLI : 175- 180: fktlp SgktgA inkty YHCA_ECOLI : 191- 195: flpht Sttt-A ltnat YRAI_ECOLI : 2- 7: m SkrtfA viltl YRAI_ECOLI : 38- 42: viyda Srke-A alpva YRAI_ECOLI : 38- 43: viyda SrkeaA lpvan YRAI_ECOLI : 119- 124: pakkk SddvnA neltl L 12: 7.8401 63( 25) K-x(0,1)-S Occurences: 63(25) AGGD_ECOLI : 139- 141: eevsg KkS dkatm AGGD_ECOLI : 140- 141: evsgk K-S dkatm CAFM_YERPE : 78- 80: denke KeS edpfv CAFM_YERPE : 114- 116: vfprd KeS lkwlc CAFM_YERPE : 180- 182: iqfae KlS wkvdg CAFM_YERPE : 210- 211: ltfgg K-S ipshy CAFM_YERPE : 220- 221: hyipp K-S twafd CLPE_ECOLI : 113- 115: hlpkd KeS vywln CLPE_ECOLI : 248- 250: tssgq KaS dslvn CS31_ECOLI : 215- 217: ytlps KiS vsglv ECPD_ECOLI : 37- 38: trviy K-S dqksv ECPD_ECOLI : 41- 42: yksdq K-S vnvrl ECPD_ECOLI : 172- 174: sgseg KaS lrvtn FAEE_ECOLI : 113- 115: hlpkd KeS vywln FANE_ECOLI : 176- 177: vking K-S idlns FIMB_BORPE : 48- 50: pettv KmS negqa FIMB_BORPE : 222- 223: kgtga K-S vqywa FIMC_ECOLI : 10- 11: nvnvr K-S qeitf FIMC_ECOLI : 131- 132: ipsmd K-S klten FIMC_SALTY : 85- 86: fvsep K-S entlr FIMC_SALTY : 119- 120: ipsvd K-S hiegk FIMC_SALTY : 157- 159: aptll KfS rvgnh FIMC_SALTY : 195- 196: vmiap K-S dmqip FOCC_ECOLI : 49- 50: tnndd K-S syliq FOCC_ECOLI : 49- 51: tnndd KsS yliqs FOCC_ECOLI : 181- 182: lkagn K-S lentm HFB1_HAEIN : 92- 93: arvea K-S gqslr HFB1_HAEIN : 154- 156: fyrpa KlS ldpfd HFB2_HAEIN : 92- 93: arvea K-S gqslr HFB2_HAEIN : 154- 156: fyrpa KlS mdsrd LPFB_SALTY : 49- 50: ltvnn K-S ttdef LPFB_SALTY : 80- 82: tpplf KlS ptknn LPFB_SALTY : 116- 117: kaipa K-S edaea LPFB_SALTY : 195- 197: gmvpa KgS lniel LPFB_SALTY : 208- 210: pagtg KvS evkyn MRKB_KLEPN : 83- 84: srvda K-S gqtlr MYFB_YEREN : 4- 6: mky KfS hnfis MYFB_YEREN : 41- 43: ntsqh KfS vrtge MYFB_YEREN : 84- 86: vkged KhS papfm MYFB_YEREN : 207- 208: fymnf K-S vslgn MYFB_YEREN : 217- 219: gnkni KlS sagne NFAE_ECOLI : 90- 91: lsedq K-S papfw NFAE_ECOLI : 156- 158: ekkad KvS lnvql PAPD_ECOLI : 37- 38: fdgse K-S mtldi PAPD_ECOLI : 85- 86: lepga K-S mvrls PAPD_ECOLI : 157- 159: qliln KvS ggyri PAPD_ECOLI : 203- 204: seqtv K-S anynt PRSD_ECOLI : 34- 36: qliln KvS ggyri PSAB_YERPE : 85- 87: vkded KtS papfi PSAB_YERPE : 148- 150: tqnnp KnS sptmd PSAB_YERPE : 269- 270: vsref K-S tvq SEFB_SALEN : 81- 82: vyndd K-S skapf SEFB_SALEN : 81- 83: vyndd KsS kapfi SEFB_SALEN : 201- 202: niani K-S gnlsf YCBF_ECOLI : 36- 37: gvvpp K-S qrqts YEHC_ECOLI : 115- 117: klptn KeS ifyln YEHC_ECOLI : 216- 217: qsvnv K-S nnann YHCA_ECOLI : 64- 65: lpesn K-S irlip YHCA_ECOLI : 114- 115: ppkdd K-S srvtv YHCA_ECOLI : 114- 116: ppkdd KsS rvtvs YRAI_ECOLI : 67- 68: dnidg K-S rapfi YRAI_ECOLI : 102- 104: nlpen KeS lfyin YRAI_ECOLI : 117- 119: aipak KkS ddvna YRAI_ECOLI : 118- 119: ipakk K-S ddvna YRAI_ECOLI : 153- 154: vndaw K-S lefkr YRAI_ECOLI : 158- 160: kslef KrS dhsln M 13: 7.8401 54( 25) P-x(0,1)-S Occurences: 54(25) AGGD_ECOLI : 48- 50: rmiyk PnS sgetl AGGD_ECOLI : 215- 217: thyia PfS syeyp CAFM_YERPE : 195- 196: liaen P-S pfymn CAFM_YERPE : 213- 214: ggksi P-S hyipp CAFM_YERPE : 219- 221: shyip PkS twafd CLPE_ECOLI : 87- 88: tfvvt P-S ffkvk CLPE_ECOLI : 242- 244: nqkkt PtS sgqka CLPE_ECOLI : 256- 257: dslvn P-S dkadk CS31_ECOLI : 15- 17: alslf PcS niyan CS31_ECOLI : 213- 214: klytl P-S kisvs ECPD_ECOLI : 70- 72: ddnae PgS itvpf ECPD_ECOLI : 82- 84: ftrtp PvS ridak ECPD_ECOLI : 155- 156: glkgn P-S eapla ECPD_ECOLI : 208- 210: vkmia PfS devmk FAEE_ECOLI : 87- 88: tfvvt P-S ffkvk FANE_ECOLI : 69- 70: vvffs P-S pmvfk FANE_ECOLI : 193- 195: mgvfs PfS kvclg FIMB_BORPE : 110- 111: dgktl P-S dresv FIMB_BORPE : 208- 210: pwmla PlS sdelr FIMC_ECOLI : 127- 128: nvkai P-S mdksk FIMC_ECOLI : 214- 215: stvkl P-S dagsn FIMC_SALTY : 37- 38: trviy P-S aakqt FIMC_SALTY : 84- 86: lfvse PkS entlr FIMC_SALTY : 115- 116: nvkai P-S vdksh FIMC_SALTY : 170- 171: lkitn P-S ayylt FIMC_SALTY : 194- 196: nvmia PkS dmqip FOCC_ECOLI : 17- 19: vffyi PqS yagva HFB1_HAEIN : 205- 207: vkmva PfS qavfe HFB2_HAEIN : 205- 207: vkmva PfS qavfe LPFB_SALTY : 169- 170: ikven P-S afnlt MRKB_KLEPN : 76- 78: fiitp PiS rvdak MRKB_KLEPN : 196- 198: tvmfa PqS sqtia MYFB_YEREN : 26- 28: slill PyS hassm MYFB_YEREN : 54- 56: triiy PlS svkgv NFAE_ECOLI : 61- 63: rvvyn PaS sgetl NFAE_ECOLI : 122- 123: tggef P-S dresr NFAE_ECOLI : 228- 230: reyia PfS sreyp PAPD_ECOLI : 116- 118: lreip PrS ekanv PAPD_ECOLI : 196- 198: tvmls PrS eqtvk PRSD_ECOLI : 73- 75: tvmls PrS eqtvn PSAB_YERPE : 55- 56: trviy P-S sstkg PSAB_YERPE : 55- 57: trviy PsS stkgv PSAB_YERPE : 234- 236: gsyvp PfS srdfi SEFB_SALEN : 56- 57: ykeda P-S tsfwi SEFB_SALEN : 108- 110: rlkvi PtS nlfnk SEFB_SALEN : 190- 192: ivikn PtS syvni YCBF_ECOLI : 35- 37: vgvvp PkS qrqts YEHC_ECOLI : 128- 130: vldip PnS peqeg YHCA_ECOLI : 49- 50: ntddh P-S llytt YHCA_ECOLI : 60- 62: tivdl PeS nksir YHCA_ECOLI : 132- 134: pvlih PaS lpeer YHCA_ECOLI : 159- 160: ieisn P-S nyvvr YHCA_ECOLI : 174- 175: qfktl P-S gktga YHCA_ECOLI : 208- 210: kvefy PaS rygyr YRAI_ECOLI : 204- 206: kqlpl PaS ggknv N 14: 7.8401 74( 25) P-x(0,1)-P Occurences: 74(25) AGGD_ECOLI : 86- 87: pfiit P-P lfrld AGGD_ECOLI : 124- 125: cvkai P-P kyedk AGGD_ECOLI : 190- 192: lkgvn PtP fymdi AGGD_ECOLI : 222- 224: ssyey PmP vnggg CAFM_YERPE : 88- 89: pfvvt P-P lfrld CAFM_YERPE : 126- 127: cvkgi P-P kdedi CAFM_YERPE : 195- 197: liaen PsP fymni CAFM_YERPE : 218- 219: pshyi P-P kstwa CLPE_ECOLI : 125- 126: nlqdi P-P alegs CS31_ECOLI : 80- 81: dfivt P-P lfrld CS31_ECOLI : 118- 119: cvrgi P-P kqgdl ECPD_ECOLI : 81- 82: pftrt P-P vsrid ECPD_ECOLI : 120- 121: nvlev P-P kpdae ECPD_ECOLI : 121- 123: vlevp PkP daekv ECPD_ECOLI : 180- 182: lrvtn PtP yyvsf FAEE_ECOLI : 125- 126: nlqdi P-P alegs FANE_ECOLI : 69- 71: vvffs PsP mvfkl FANE_ECOLI : 109- 110: nvqei P-P apkgd FANE_ECOLI : 110- 112: vqeip PaP kgdgg FIMB_BORPE : 83- 84: pfflt P-P larvd FIMB_BORPE : 125- 126: nvlev P-P katpe FIMB_BORPE : 180- 182: levhn PtP yyvnl FIMC_ECOLI : 88- 89: rfivt P-P lfamk FIMC_ECOLI : 159- 160: aklal P-P dqaae FIMC_ECOLI : 181- 183: ltlin PtP yyltv FIMC_ECOLI : 204- 205: enalv P-P mgest FIMC_SALTY : 77- 78: tfivt P-P lfvse FIMC_SALTY : 98- 100: iyagq PlP gdres FIMC_SALTY : 201- 203: sdmqi PlP tgaqg FOCC_ECOLI : 73- 74: rfvit P-P lfsmq FOCC_ECOLI : 144- 145: qglvi P-P eqapg FOCC_ECOLI : 166- 168: ltlfn PtP yyltv FOCC_ECOLI : 189- 190: entmv P-P qgkvt HFB1_HAEIN : 84- 85: pfvit P-P varve HFB1_HAEIN : 106- 108: ftgge PlP ddres HFB1_HAEIN : 123- 124: nlldi P-P kpdae HFB1_HAEIN : 124- 126: lldip PkP daefl HFB2_HAEIN : 84- 85: pfvit P-P varve HFB2_HAEIN : 106- 108: ftgse PlP ddres HFB2_HAEIN : 123- 124: nlldi P-P kpdaa HFB2_HAEIN : 124- 126: lldip PkP daafl LPFB_SALTY : 76- 77: pfiit P-P lfkls MRKB_KLEPN : 75- 76: pfiit P-P isrvd MRKB_KLEPN : 114- 115: nllei P-P veasq MRKB_KLEPN : 169- 171: lsvsn PtP fyitv MYFB_YEREN : 87- 89: edkhs PaP fmatp MYFB_YEREN : 94- 95: pfmat P-P lfrld MYFB_YEREN : 132- 133: citgv P-P kegdv MYFB_YEREN : 199- 201: lqvnn PtP fymnf NFAE_ECOLI : 92- 94: edqks PaP fwwtp NFAE_ECOLI : 99- 100: pfwwt P-P lfrrd NFAE_ECOLI : 137- 138: cvkgi P-P keddr NFAE_ECOLI : 175- 176: klfvr P-P avkgr NFAE_ECOLI : 203- 205: lkgvn PtP fyinl NFAE_ECOLI : 235- 237: ssrey PlP aghrv PAPD_ECOLI : 75- 76: pviat P-P vqrle PAPD_ECOLI : 115- 116: nlrei P-P rseka PAPD_ECOLI : 167- 169: yrien PtP yyvtv PRSD_ECOLI : 44- 46: yrien PtP yyvtv PSAB_YERPE : 88- 90: edkts PaP fivtp PSAB_YERPE : 95- 96: pfivt P-P lfrld PSAB_YERPE : 133- 134: cltgi P-P kngda PSAB_YERPE : 198- 200: levnn PtP fymnf PSAB_YERPE : 233- 234: ngsyv P-P fssrd SEFB_SALEN : 91- 92: pfivt P-P ilkve SEFB_SALEN : 129- 130: cvkgv P-P lndne YCBF_ECOLI : 10- 12: vqltn PtP yyinl YCBF_ECOLI : 34- 35: nvgvv P-P ksqrq YEHC_ECOLI : 77- 78: gdtsl P-P ekiqv YEHC_ECOLI : 89- 90: pfmlt P-P vakig YEHC_ECOLI : 127- 128: nvldi P-P nspeq YHCA_ECOLI : 109- 110: tfegi P-P kddks YRAI_ECOLI : 76- 77: pfiit P-P lfrle YRAI_ECOLI : 202- 204: ehkql PlP asggk O 15: 7.8401 55( 25) V-x(2,3)-K Occurences: 55(25) AGGD_ECOLI : 136- 139: wakee Vsg-K ksdka AGGD_ECOLI : 136- 140: wakee VsgkK sdkat AGGD_ECOLI : 172- 175: gqpdd Vag-K ikwqk AGGD_ECOLI : 181- 184: ikwqk Vgn-K lkgvn AGGD_ECOLI : 202- 205: iaelr Vge-K eitet AGGD_ECOLI : 231- 234: ngggd Vrw-K vvtdy CAFM_YERPE : 55- 58: aagvm Vsv-K ntqdy CAFM_YERPE : 185- 189: klswk VdggK liaen CLPE_ECOLI : 137- 140: giava Vrt-K lklfy CLPE_ECOLI : 213- 216: mpgde Vqv-K gnvvk CS31_ECOLI : 133- 136: nekef Vgm-K lnvsi CS31_ECOLI : 175- 179: rdgnl VaknK tpyyf ECPD_ECOLI : 34- 37: isgtr Viy-K sdqks ECPD_ECOLI : 119- 122: fnvle Vpp-K pdaek FAEE_ECOLI : 213- 216: mpgde Vqv-K gnvvk FANE_ECOLI : 224- 228: atsyt VqrsK FIMB_BORPE : 88- 92: pplar VdpgK gqtlr FIMB_BORPE : 124- 127: lnvle Vpp-K atpee FIMB_BORPE : 185- 189: ptpyy VnlqK levge FIMC_ECOLI : 6- 10: msnkn VnvrK sqeit FIMC_SALTY : 81- 85: tpplf VsepK sentl FIMC_SALTY : 182- 185: lvnis Vga-K kidnv FIMC_SALTY : 182- 186: lvnis VgakK idnvm FOCC_ECOLI : 106- 109: eslfw Vnv-K aipam FOCC_ECOLI : 129- 133: lqfai VsriK llyrp FOCC_ECOLI : 173- 177: pyylt VtdlK agnks HFB1_HAEIN : 46- 49: agqkn Viv-K lennd HFB1_HAEIN : 89- 92: ppvar Vea-K sgqsl HFB1_HAEIN : 166- 169: damkk Vvf-K atpkg HFB1_HAEIN : 210- 214: pfsqa VfeaK gvrsg HFB2_HAEIN : 46- 49: agqkn Viv-K lennd HFB2_HAEIN : 89- 92: ppvar Vea-K sgqsl HFB2_HAEIN : 166- 169: damkk Vvf-K atpeg HFB2_HAEIN : 210- 214: pfsqa VfeaK gvrsg LPFB_SALTY : 46- 49: easlt Vnn-K sttde LPFB_SALTY : 192- 195: ektgm Vpa-K gslni LPFB_SALTY : 209- 213: agtgk VsevK yniin MRKB_KLEPN : 80- 83: ppisr Vda-K sgqtl MRKB_KLEPN : 226- 229: dygad Vav-K vtvk MRKB_KLEPN : 230- 233: dvavk Vtv-K MYFB_YEREN : 131- 134: lcitg Vpp-K egdvw NFAE_ECOLI : 185- 188: grpdd Vag-K vewqr NFAE_ECOLI : 215- 218: lstlt Vgg-K evker PAPD_ECOLI : 235- 239: gsrcs VkkeK PRSD_ECOLI : 111- 115: gsrcs VkkeK PSAB_YERPE : 36- 40: sqdvv VnttK hlftv PSAB_YERPE : 244- 247: dfiip Vkn-K gkate SEFB_SALEN : 49- 52: lgttr Viy-K edaps SEFB_SALEN : 226- 229: qlpgg Vhs-K itlti YCBF_ECOLI : 22- 25: liqvs Vng-K alsnv YCBF_ECOLI : 32- 36: lsnvg VvppK sqrqt YCBF_ECOLI : 33- 36: snvgv Vpp-K sqrqt YEHC_ECOLI : 102- 105: nsgqq Vki-K impnk YEHC_ECOLI : 213- 216: lesqs Vnv-K snnan YHCA_ECOLI : 31- 34: tsvll Vde-K rgeas YHCA_ECOLI : 220- 224: rgnky VtdlK YRAI_ECOLI : 46- 49: eaalp Van-K gaetp P 16: 7.8401 62( 25) V-x(1,2)-K Occurences: 62(25) AGGD_ECOLI : 136- 139: wakee VsgK ksdka AGGD_ECOLI : 172- 175: gqpdd VagK ikwqk AGGD_ECOLI : 181- 184: ikwqk VgnK lkgvn AGGD_ECOLI : 202- 205: iaelr VgeK eitet AGGD_ECOLI : 231- 234: ngggd VrwK vvtdy CAFM_YERPE : 55- 58: aagvm VsvK ntqdy CLPE_ECOLI : 15- 17: fftnr Vt-K algmt CLPE_ECOLI : 75- 77: wvdni Ve-K dtrpt CLPE_ECOLI : 137- 140: giava VrtK lklfy CLPE_ECOLI : 213- 216: mpgde VqvK gnvvk CLPE_ECOLI : 219- 221: qvkgn Vv-K vdsln CS31_ECOLI : 133- 136: nekef VgmK lnvsi CS31_ECOLI : 175- 177: rdgnl Va-K nktpy ECPD_ECOLI : 34- 37: isgtr ViyK sdqks ECPD_ECOLI : 119- 122: fnvle VppK pdaek ECPD_ECOLI : 213- 215: pfsde Vm-K vngln FAEE_ECOLI : 15- 17: fftnr Vt-K algmt FAEE_ECOLI : 75- 77: wvdni Ve-K dtrpt FAEE_ECOLI : 213- 216: mpgde VqvK gnvvk FAEE_ECOLI : 219- 221: qvkgn Vv-K vdsln FANE_ECOLI : 73- 75: spspm Vf-K lnpkq FIMB_BORPE : 124- 127: lnvle VppK atpee FIMC_ECOLI : 8- 10: nknvn Vr-K sqeit FIMC_SALTY : 117- 119: kaips Vd-K shieg FIMC_SALTY : 182- 185: lvnis VgaK kidnv FOCC_ECOLI : 106- 109: eslfw VnvK aipam FOCC_ECOLI : 225- 227: eqvkg Vv-K HFB1_HAEIN : 46- 49: agqkn VivK lennd HFB1_HAEIN : 89- 92: ppvar VeaK sgqsl HFB1_HAEIN : 166- 169: damkk VvfK atpkg HFB1_HAEIN : 167- 169: amkkv Vf-K atpkg HFB2_HAEIN : 46- 49: agqkn VivK lennd HFB2_HAEIN : 89- 92: ppvar VeaK sgqsl HFB2_HAEIN : 166- 169: damkk VvfK atpeg HFB2_HAEIN : 167- 169: amkkv Vf-K atpeg LPFB_SALTY : 46- 49: easlt VnnK sttde LPFB_SALTY : 192- 195: ektgm VpaK gslni MRKB_KLEPN : 80- 83: ppisr VdaK sgqtl MRKB_KLEPN : 208- 210: alssa Vs-K getlt MRKB_KLEPN : 226- 229: dygad VavK vtvk MRKB_KLEPN : 230- 233: dvavk VtvK MYFB_YEREN : 131- 134: lcitg VppK egdvw MYFB_YEREN : 262- 264: gsesq Vf-K ani NFAE_ECOLI : 185- 188: grpdd VagK vewqr NFAE_ECOLI : 215- 218: lstlt VggK evker PAPD_ECOLI : 235- 237: gsrcs Vk-K ek PRSD_ECOLI : 111- 113: gsrcs Vk-K ek PSAB_YERPE : 244- 247: dfiip VknK gkate SEFB_SALEN : 49- 52: lgttr ViyK edaps SEFB_SALEN : 186- 188: kgnsi Vi-K nptss SEFB_SALEN : 226- 229: qlpgg VhsK itlti YCBF_ECOLI : 22- 25: liqvs VngK alsnv YCBF_ECOLI : 33- 36: snvgv VppK sqrqt YEHC_ECOLI : 91- 93: mltpp Va-K igans YEHC_ECOLI : 102- 105: nsgqq VkiK impnk YEHC_ECOLI : 159- 161: agiap Vn-K atfkk YEHC_ECOLI : 177- 179: sgngl Vi-K ndsan YEHC_ECOLI : 213- 216: lesqs VnvK snnan YHCA_ECOLI : 31- 34: tsvll VdeK rgeas YRAI_ECOLI : 46- 49: eaalp VanK gaetp YRAI_ECOLI : 130- 132: neltl Vf-K trikm YRAI_ECOLI : 181- 183: fagla Vd-K tdlts Q 17: 7.8401 71( 25) V-x(2,3)-P Occurences: 71(25) AGGD_ECOLI : 120- 124: lqwic VkaiP pkyed AGGD_ECOLI : 165- 169: vrpad VkgqP ddvag AGGD_ECOLI : 188- 192: nklkg VnptP fymdi CAFM_YERPE : 85- 88: sedpf Vvt-P plfrl CAFM_YERPE : 85- 89: sedpf VvtpP lfrld CAFM_YERPE : 86- 89: edpfv Vtp-P lfrld CAFM_YERPE : 122- 126: lkwlc VkgiP pkded CLPE_ECOLI : 84- 87: trptf Vvt-P sffkv CLPE_ECOLI : 174- 178: grtml VnttP yifai CS31_ECOLI : 51- 54: geslr Vkn-P qispi CS31_ECOLI : 78- 81: nadfi Vtp-P lfrld CS31_ECOLI : 114- 118: lktlc VrgiP pkqgd ECPD_ECOLI : 116- 120: afwfn VlevP pkpda ECPD_ECOLI : 119- 123: fnvle VppkP daekv ECPD_ECOLI : 177- 180: kaslr Vtn-P tpyyv FAEE_ECOLI : 84- 87: trptf Vvt-P sffkv FAEE_ECOLI : 174- 178: grtml VnttP yifai FANE_ECOLI : 65- 69: kngev VffsP spmvf FANE_ECOLI : 105- 109: ifwln VqeiP papkg FANE_ECOLI : 190- 193: knkmg Vfs-P fskvc FIMB_BORPE : 75- 78: akpde Vqv-P ffltp FIMB_BORPE : 121- 125: vfwln VlevP pkatp FIMB_BORPE : 177- 180: ngvle Vhn-P tpyyv FIMC_ECOLI : 45- 48: lgatr Viy-P agqkq FIMC_ECOLI : 86- 89: dgrfi Vtp-P lfamk FIMC_ECOLI : 123- 127: lfwmn VkaiP smdks FIMC_ECOLI : 211- 214: mgest Vkl-P sdags FIMC_SALTY : 34- 37: lgatr Viy-P saakq FIMC_SALTY : 75- 78: ektfi Vtp-P lfvse FIMC_SALTY : 81- 84: tpplf Vse-P ksent FIMC_SALTY : 111- 115: lfwmn VkaiP svdks FIMC_SALTY : 190- 194: kkidn VmiaP ksdmq FOCC_ECOLI : 30- 33: lgatr Viy-P egqkq FOCC_ECOLI : 70- 73: kdarf Vit-P plfsm FOCC_ECOLI : 70- 74: kdarf VitpP lfsmq FOCC_ECOLI : 108- 112: lfwvn VkaiP amdka FOCC_ECOLI : 142- 145: rpqgl Vip-P eqapg FOCC_ECOLI : 196- 199: qgkvt Vni-P ggytg HFB1_HAEIN : 37- 40: itgtr Viy-P agqkn HFB1_HAEIN : 81- 84: tktpf Vit-P pvarv HFB1_HAEIN : 81- 85: tktpf VitpP varve HFB2_HAEIN : 37- 40: itgtr Viy-P agqkn HFB2_HAEIN : 81- 84: tktpf Vit-P pvarv HFB2_HAEIN : 81- 85: tktpf VitpP varve LPFB_SALTY : 110- 114: vywin VkaiP aksed LPFB_SALTY : 166- 169: anqik Ven-P safnl MRKB_KLEPN : 166- 169: gssls Vsn-P tpfyi MRKB_KLEPN : 192- 196: lnskt VmfaP qssqt MYFB_YEREN : 65- 68: gvsls Vtn-P qdypi MYFB_YEREN : 196- 199: gqqlq Vnn-P tpfym NFAE_ECOLI : 57- 61: lgatr VvynP assge NFAE_ECOLI : 58- 61: gatrv Vyn-P assge NFAE_ECOLI : 133- 137: rqwic VkgiP pkedd NFAE_ECOLI : 173- 176: ciklf Vrp-P avkgr NFAE_ECOLI : 178- 182: vrppa VkgrP ddvag NFAE_ECOLI : 201- 205: nrlkg VnptP fyinl PAPD_ECOLI : 71- 75: iitgp ViatP pvqrl PAPD_ECOLI : 192- 196: gefet VmlsP rseqt PRSD_ECOLI : 69- 73: gefet VmlsP rseqt PSAB_YERPE : 24- 27: ivifm Vsl-P yaysq PSAB_YERPE : 52- 55: igttr Viy-P ssstk PSAB_YERPE : 66- 69: gvsvs Van-P qdypi PSAB_YERPE : 93- 96: papfi Vtp-P lfrld PSAB_YERPE : 173- 177: frpdk VkgdP tdsad PSAB_YERPE : 195- 198: gnyle Vnn-P tpfym SEFB_SALEN : 89- 92: kapfi Vtp-P ilkve SEFB_SALEN : 125- 129: lywlc VkgvP plndn SEFB_SALEN : 186- 190: kgnsi ViknP tssyv YCBF_ECOLI : 30- 34: kalsn VgvvP pksqr YCBF_ECOLI : 32- 35: lsnvg Vvp-P ksqrq YEHC_ECOLI : 123- 127: ifyln VldiP pnspe YHCA_ECOLI : 57- 60: lytti Vdl-P esnks YHCA_ECOLI : 128- 132: rqdlp VlihP aslpe YHCA_ECOLI : 204- 208: atdtk VefyP asryg YRAI_ECOLI : 110- 114: lfyin VraiP akkks R 18: 7.8401 60( 25) G-x(1,2)-V Occurences: 60(25) AGGD_ECOLI : 228- 231: mpvng GgdV rwkvv AGGD_ECOLI : 229- 231: pvngg Gd-V rwkvv CAFM_YERPE : 52- 55: pldaa GvmV svknt CAFM_YERPE : 107- 109: riaqa Gg-V fprdk CAFM_YERPE : 150- 153: pdkdv GvfV qfain CLPE_ECOLI : 132- 135: alegs GiaV avrtk CLPE_ECOLI : 210- 213: lmfmp GdeV qvkgn CLPE_ECOLI : 217- 219: evqvk Gn-V vkvds CLPE_ECOLI : 217- 220: evqvk GnvV kvdsl CS31_ECOLI : 172- 175: wgird GnlV aknkt CS31_ECOLI : 220- 222: kisvs Gl-V kweii ECPD_ECOLI : 31- 34: divis GtrV iyksd FAEE_ECOLI : 132- 135: alegs GiaV alrtk FAEE_ECOLI : 210- 213: lmfmp GdeV qvkgn FAEE_ECOLI : 217- 219: evqvk Gn-V vkvds FAEE_ECOLI : 217- 220: evqvk GnvV kvdsl FANE_ECOLI : 50- 53: sehky GgqV widni FANE_ECOLI : 51- 53: ehkyg Gq-V widni FANE_ECOLI : 62- 64: nidkn Ge-V vffsp FANE_ECOLI : 62- 65: nidkn GevV ffsps FANE_ECOLI : 200- 202: skvcl Gn-V ntsgn FIMB_BORPE : 33- 36: slvit GtrV iynag FIMB_BORPE : 133- 136: atpee GhgV lqlti FIMB_BORPE : 233- 235: aiddf Gg-V tpyqa FIMC_ECOLI : 194- 197: telna GtrV lenal FIMC_SALTY : 8- 11: nsikv GfiV lltlf FIMC_SALTY : 124- 127: kshie GknV lqlai FIMC_SALTY : 208- 210: ptgaq Gn-V tfqsv FOCC_ECOLI : 140- 142: lyrpq Gl-V ippeq FOCC_ECOLI : 192- 194: mvppq Gk-V tvnip FOCC_ECOLI : 224- 226: teqvk Gv-V k HFB1_HAEIN : 34- 37: nviit GtrV iypag HFB1_HAEIN : 174- 177: katpk GvlV dnqtp HFB2_HAEIN : 34- 37: dviit GtrV iypag HFB2_HAEIN : 174- 177: katpe GvlV dnqtp LPFB_SALTY : 24- 26: qnsfa Gg-V alsst LPFB_SALTY : 190- 192: diekt Gm-V pakgs LPFB_SALTY : 207- 209: lpagt Gk-V sevky MRKB_KLEPN : 223- 226: nindy GadV avkvt MYFB_YEREN : 105- 107: dagmr Gr-V rvtrt MYFB_YEREN : 136- 138: vppke Gd-V wdnsq NFAE_ECOLI : 187- 189: pddva Gk-V ewqra NFAE_ECOLI : 217- 220: tltvg GkeV kerey NFAE_ECOLI : 239- 242: yplpa GhrV rfsgr PAPD_ECOLI : 69- 71: ekiit Gp-V iatpp PAPD_ECOLI : 220- 223: indyg GrpV lsfic PRSD_ECOLI : 96- 99: indyg GrpV lsfic PSAB_YERPE : 61- 64: ssstk GvsV svanp PSAB_YERPE : 106- 108: daglq Gr-V riirt PSAB_YERPE : 229- 232: deikn GsyV ppfss PSAB_YERPE : 262- 264: vindn Gg-V srefk SEFB_SALEN : 224- 226: yaqlp Gg-V hskit YCBF_ECOLI : 31- 33: alsnv Gv-V ppksq YEHC_ECOLI : 34- 36: lpaha Gi-V iygtr YEHC_ECOLI : 99- 102: igans GqqV kikim YEHC_ECOLI : 175- 177: nrsgn Gl-V iknds YHCA_ECOLI : 21- 23: ntlat Gm-V petsv YHCA_ECOLI : 80- 82: irvea Gq-V qqvrf YRAI_ECOLI : 24- 27: gqala GgiV lqrtr YRAI_ECOLI : 25- 27: qalag Gi-V lqrtr YRAI_ECOLI : 146- 148: pahlk Gr-V ndawk YRAI_ECOLI : 178- 181: yvvfa GlaV dktdl YRAI_ECOLI : 208- 211: lpasg GknV kwaai S 19: 7.8401 57( 25) V-x(3,4)-P Occurences: 57(25) AGGD_ECOLI : 120- 124: lqwic Vkai-P pkyed AGGD_ECOLI : 120- 125: lqwic VkaipP kyedk AGGD_ECOLI : 165- 169: vrpad Vkgq-P ddvag AGGD_ECOLI : 188- 192: nklkg Vnpt-P fymdi CAFM_YERPE : 85- 89: sedpf Vvtp-P lfrld CAFM_YERPE : 122- 126: lkwlc Vkgi-P pkded CAFM_YERPE : 122- 127: lkwlc VkgipP kdedi CLPE_ECOLI : 174- 178: grtml Vntt-P yifai CS31_ECOLI : 98- 103: irivm VnglyP kdres CS31_ECOLI : 114- 118: lktlc Vrgi-P pkqgd CS31_ECOLI : 114- 119: lktlc VrgipP kqgdl ECPD_ECOLI : 116- 120: afwfn Vlev-P pkpda ECPD_ECOLI : 116- 121: afwfn VlevpP kpdae ECPD_ECOLI : 119- 123: fnvle Vppk-P daekv ECPD_ECOLI : 177- 182: kaslr VtnptP yyvsf ECPD_ECOLI : 203- 208: rypid VkmiaP fsdev FAEE_ECOLI : 174- 178: grtml Vntt-P yifai FANE_ECOLI : 64- 69: dknge VvffsP spmvf FANE_ECOLI : 65- 69: kngev Vffs-P spmvf FANE_ECOLI : 73- 78: spspm VfklnP kqkqi FANE_ECOLI : 105- 109: ifwln Vqei-P papkg FANE_ECOLI : 105- 110: ifwln VqeipP apkgd FIMB_BORPE : 121- 125: vfwln Vlev-P pkatp FIMB_BORPE : 121- 126: vfwln VlevpP katpe FIMB_BORPE : 177- 182: ngvle VhnptP yyvnl FIMC_ECOLI : 123- 127: lfwmn Vkai-P smdks FIMC_SALTY : 111- 115: lfwmn Vkai-P svdks FIMC_SALTY : 190- 194: kkidn Vmia-P ksdmq FOCC_ECOLI : 12- 17: lasfl VffyiP qsyag FOCC_ECOLI : 70- 74: kdarf Vitp-P lfsmq FOCC_ECOLI : 108- 112: lfwvn Vkai-P amdka FOCC_ECOLI : 194- 199: ppqgk VtvniP ggytg HFB1_HAEIN : 81- 85: tktpf Vitp-P varve HFB1_HAEIN : 167- 172: amkkv VfkatP kgvlv HFB1_HAEIN : 177- 182: pkgvl VdnqtP yymny HFB1_HAEIN : 200- 205: kpakn VkmvaP fsqav HFB2_HAEIN : 81- 85: tktpf Vitp-P varve HFB2_HAEIN : 167- 172: amkkv VfkatP egvlv HFB2_HAEIN : 177- 182: pegvl VdnqtP yymny HFB2_HAEIN : 200- 205: kpakn VkmvaP fsqav LPFB_SALTY : 110- 114: vywin Vkai-P aksed MRKB_KLEPN : 166- 171: gssls VsnptP fyitv MRKB_KLEPN : 192- 196: lnskt Vmfa-P qssqt MYFB_YEREN : 196- 201: gqqlq VnnptP fymnf NFAE_ECOLI : 57- 61: lgatr Vvyn-P assge NFAE_ECOLI : 133- 137: rqwic Vkgi-P pkedd NFAE_ECOLI : 133- 138: rqwic VkgipP keddr NFAE_ECOLI : 178- 182: vrppa Vkgr-P ddvag NFAE_ECOLI : 201- 205: nrlkg Vnpt-P fyinl PAPD_ECOLI : 71- 75: iitgp Viat-P pvqrl PAPD_ECOLI : 71- 76: iitgp ViatpP vqrle PAPD_ECOLI : 77- 82: iatpp VqrleP gaksm PAPD_ECOLI : 192- 196: gefet Vmls-P rseqt PRSD_ECOLI : 69- 73: gefet Vmls-P rseqt PSAB_YERPE : 64- 69: tkgvs VsvanP qdypi PSAB_YERPE : 173- 177: frpdk Vkgd-P tdsad PSAB_YERPE : 195- 200: gnyle VnnptP fymnf SEFB_SALEN : 125- 129: lywlc Vkgv-P plndn SEFB_SALEN : 125- 130: lywlc VkgvpP lndne SEFB_SALEN : 186- 190: kgnsi Vikn-P tssyv YCBF_ECOLI : 5- 10: nsqg VqltnP tpyyi YCBF_ECOLI : 30- 34: kalsn Vgvv-P pksqr YCBF_ECOLI : 30- 35: kalsn VgvvpP ksqrq YEHC_ECOLI : 123- 127: ifyln Vldi-P pnspe YEHC_ECOLI : 123- 128: ifyln VldipP nspeq YHCA_ECOLI : 128- 132: rqdlp Vlih-P aslpe YHCA_ECOLI : 204- 208: atdtk Vefy-P asryg YRAI_ECOLI : 110- 114: lfyin Vrai-P akkks T 20: 7.8401 56( 25) N-x(4,5)-P Occurences: 56(25) AGGD_ECOLI : 59- 64: tlavi Nehny-P ilvqa CAFM_YERPE : 59- 64: mvsvk Ntqdy-P vliqs CAFM_YERPE : 139- 145: vddat NkqkfnP dkdvg CAFM_YERPE : 168- 174: llvrp NelkgtP iqfae CLPE_ECOLI : 120- 125: svywl Nlqdi-P paleg CLPE_ECOLI : 120- 126: svywl NlqdipP alegs CLPE_ECOLI : 237- 242: qtwti Nqkkt-P tssgq CS31_ECOLI : 53- 58: slrvk Npqis-P iliqs ECPD_ECOLI : 49- 54: nvrle Nkgnn-P llvqs ECPD_ECOLI : 115- 120: rafwf Nvlev-P pkpda ECPD_ECOLI : 115- 121: rafwf NvlevpP kpdae ECPD_ECOLI : 154- 159: dglkg Npsea-P lalkw FAEE_ECOLI : 120- 125: svywl Nlqdi-P paleg FAEE_ECOLI : 120- 126: svywl NlqdipP alegs FANE_ECOLI : 88- 94: ivriv NindnlP kdres FANE_ECOLI : 104- 109: sifwl Nvqei-P papkg FANE_ECOLI : 104- 110: sifwl NvqeipP apkgd FIMB_BORPE : 51- 56: tvkms Negqa-P almqa FIMB_BORPE : 67- 72: widdg Naeak-P devqv FIMB_BORPE : 120- 125: svfwl Nvlev-P pkatp FIMB_BORPE : 120- 126: svfwl NvlevpP katpe FIMC_ECOLI : 122- 127: slfwm Nvkai-P smdks FIMC_ECOLI : 200- 205: trvle Nalvp-P mgest FIMC_SALTY : 110- 115: slfwm Nvkai-P svdks FIMC_SALTY : 144- 149: fvrpa Nlpqt-P edapt FIMC_SALTY : 189- 194: akkid Nvmia-P ksdmq FOCC_ECOLI : 107- 112: slfwv Nvkai-P amdka FOCC_ECOLI : 185- 190: nksle Ntmvp-P qgkvt HFB1_HAEIN : 68- 73: widng Npnad-P kytkt HFB1_HAEIN : 118- 123: slfyf Nlldi-P pkpda HFB1_HAEIN : 118- 124: slfyf NlldipP kpdae HFB1_HAEIN : 199- 205: nkpak NvkmvaP fsqav HFB2_HAEIN : 68- 73: widng Npnad-P kytkt HFB2_HAEIN : 118- 123: slfyf Nlldi-P pkpda HFB2_HAEIN : 118- 124: slfyf NlldipP kpdaa HFB2_HAEIN : 199- 205: nkpak NvkmvaP fsqav LPFB_SALTY : 65- 71: widda NgnkktP fiitp LPFB_SALTY : 93- 99: vlriv NttntlP qdres LPFB_SALTY : 109- 114: svywi Nvkai-P aksed MRKB_KLEPN : 43- 48: tvqls Ntadr-P alata MRKB_KLEPN : 59- 64: wldng Nadat-P dtitt MRKB_KLEPN : 109- 114: tlwwl Nllei-P pveas MRKB_KLEPN : 109- 115: tlwwl NlleipP veasq MYFB_YEREN : 67- 72: slsvt Npqdy-P ilvqt MYFB_YEREN : 223- 229: lssag NenyvaP faers NFAE_ECOLI : 72- 77: tltvi Ndqdy-P mlvqs PAPD_ECOLI : 45- 51: tldis NdnkqlP ylaqa PAPD_ECOLI : 110- 115: slfyf Nlrei-P prsek PAPD_ECOLI : 110- 116: slfyf NlreipP rseka PAPD_ECOLI : 216- 222: ylsyi NdyggrP vlsfi PRSD_ECOLI : 80- 86: seqtv NrnyntP ylsyi PRSD_ECOLI : 92- 98: ylsyi NdyggrP vlsfi PSAB_YERPE : 68- 73: svsva Npqdy-P ilvqt PSAB_YERPE : 142- 147: gdawg Ntqnn-P knssp PSAB_YERPE : 146- 152: gntqn NpknssP tmdiq PSAB_YERPE : 228- 233: kdeik Ngsyv-P pfssr PSAB_YERPE : 228- 234: kdeik NgsyvpP fssrd SEFB_SALEN : 64- 69: sfwim Nekey-P ilvqt SEFB_SALEN : 204- 210: niksg NlsfniP ngyie SEFB_SALEN : 211- 216: sfnip Ngyie-P fgyaq YCBF_ECOLI : 29- 34: gkals Nvgvv-P pksqr YCBF_ECOLI : 29- 35: gkals NvgvvpP ksqrq YEHC_ECOLI : 122- 127: sifyl Nvldi-P pnspe YEHC_ECOLI : 122- 128: sifyl NvldipP nspeq YHCA_ECOLI : 44- 49: sinik Ntddh-P sllyt YHCA_ECOLI : 182- 188: ktgai NktyflP htstt YRAI_ECOLI : 48- 54: alpva NkgaetP yllqs YRAI_ECOLI : 109- 114: slfyi Nvrai-P akkks Number of patterns evaluated by Pratt:181 Total running time: 1 seconds