------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file PII_GLNB_CTER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PII_GLNB_CTER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLN1_METTL 105 GLN2_METTL 128 GLNB_AZOBR 112 GLNB_BRAJA 111 GLNB_ECOLI 112 GLNB_HAEIN 112 GLNB_KLEPN 112 GLNB_RHILV 111 GLNB_RHOCA 112 GLNB_RHOSH 112 GLNB_SYNP7 112 NRGB_BACSU 116 YBAI_ECOLI 128 Pratt run started at Thu Feb 6 20:49:12 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 13( 13) T-x(3)-G-D-G-x-I-F 2: 20.8503 13( 13) G-D-G-x-I-F 3: 18.8503 22( 13) I-R-x(0,2)-T-G-x(0,2)-E 4: 16.6802 13( 13) D-G-x-I-F 5: 16.1802 16( 13) T-G-x(2)-G-x(0,1)-D 6: 15.6802 14( 13) R-T-G-x(0,2)-E 7: 15.6802 14( 13) T-x(3)-G-x(1,2)-G-x(0,1)-I 8: 15.6802 19( 13) I-x(5)-T-x(3,5)-G-x-G 9: 12.5102 14( 13) G-x-I-F 10: 12.5102 14( 13) G-x-G-K 11: 12.0102 16( 13) G-x(2)-G-x(0,1)-D 12: 12.0102 23( 13) G-x(1,2)-G-x(2)-K 13: 12.0102 20( 13) G-x(3,4)-T-x(5)-G 14: 11.5102 19( 13) G-x(1,2)-G-x(0,1)-I 15: 11.5102 17( 13) T-G-x(0,2)-E 16: 11.5102 14( 13) T-x(0,2)-I-x(2)-G 17: 11.5102 17( 13) I-x(3)-T-x(0,2)-E 18: 11.5102 29( 13) K-x(0,1)-I-x(3,4)-I 19: 11.5102 15( 13) G-x(3,4)-G-x(3,4)-Y 20: 11.5102 13( 13) G-x(0,1)-G-x(1,2)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 64.3785 13( 13) T-[DEG]-x(2)-G-D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] B 2: 57.5579 13( 13) G-D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] C 3: 53.8097 13( 13) T-x(3)-G-x-G-x(0,1)-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] D 4: 53.3879 13( 13) D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] E 5: 49.6397 13( 13) G-x-G-x(0,1)-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] F 6: 49.2178 13( 13) G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] G 7: 35.4070 13( 13) G-[DR]-G-K-x(2)-[GIV]-x(3)-[ADEQST]-[ENQR]-x(3)-I-x-[DT]-[GI]-[DEQ] H 8: 23.8398 20( 13) G-x(1,2)-G-[DKR]-[GQ]-K-[GI]-[FHY] I 9: 21.4573 18( 13) I-x(3)-[AGNST]-x-T-x(3,5)-G-x-G-x(3)-[AGIV]-x-[ADNPST] J 10: 20.7762 22( 13) I-R-x(0,2)-T-G-x(0,2)-E-x-[ADGNP] K 11: 19.3503 16( 13) T-G-x(2)-G-x(0,1)-D-[AG] L 12: 17.6062 14( 13) R-T-G-x(0,2)-E-x-[ADGNP] M 13: 15.1803 16( 13) G-x(2)-G-x(0,1)-D-[AG] N 14: 15.1654 16( 13) I-x-[GIPV]-x-T-x(0,2)-E-[ADGNSTV] O 15: 14.1091 13( 13) G-x(0,1)-G-x(1,2)-K-[AGV] P 16: 13.9263 20( 13) G-x(3,4)-T-x(3)-[ACGSV]-x-G Q 17: 13.7647 17( 13) T-G-x(0,2)-E-x-[ADGN] R 18: 13.4109 19( 13) I-x(3)-[AGNST]-x-T-x(3,5)-G S 19: 11.5102 20( 12) I-R-x(0,2)-T T 20: 11.5102 14( 13) T-x(0,2)-I-x(2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 64.3785 13( 13) T-[DEG]-x(2)-G-D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 79- 104: kssas TGnfGDGKIFIqpITEAytIRTGEtG i GLN2_METTL : 97- 122: skvnr TGsfGDGRIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 83- 108: qqaah TGriGDGKIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 82- 107: rraaq TGriGDGKIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 83- 108: irtaq TGkiGDGKIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 83- 108: ietaq TGkiGDGKIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 83- 108: irtaq TGkiGDGKIFVfdVARVirIRTGEeD daai GLNB_RHILV : 82- 107: rkaaq TGriGDGKIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 83- 108: vgaar TEkiGDGKIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 83- 108: vsasr TDkiGDGKIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 83- 108: vaaar TGeiGDGKIFVspVDQTirIRTGEkN adai NRGB_BACSU : 87- 112: krvlk TGspGDGKIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 83- 108: skaay TGkiGDGKIFVaeLQRVirIRTGDdE aacnl B 2: 57.5579 13( 13) G-D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 83- 104: stgnf GDGKIFIqpITEAytIRTGEtG i GLN2_METTL : 101- 122: rtgsf GDGRIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 87- 108: htgri GDGKIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 86- 107: qtgri GDGKIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 87- 108: qtgki GDGKIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 87- 108: qtgki GDGKIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 87- 108: qtgki GDGKIFVfdVARVirIRTGEeD daai GLNB_RHILV : 86- 107: qtgri GDGKIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 87- 108: rteki GDGKIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 87- 108: rtdki GDGKIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 87- 108: rtgei GDGKIFVspVDQTirIRTGEkN adai NRGB_BACSU : 91- 112: ktgsp GDGKIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 87- 108: ytgki GDGKIFVaeLQRVirIRTGDdE aacnl C 3: 53.8097 13( 13) T-x(3)-G-x-G-x(0,1)-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 79- 104: kssas TgnfGdGkIFIqpITEAytIRTGEtG i GLN2_METTL : 97- 122: skvnr TgsfGdGrIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 83- 108: qqaah TgriGdGkIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 82- 107: rraaq TgriGdGkIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 83- 108: irtaq TgkiGdGkIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 83- 108: ietaq TgkiGdGkIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 83- 108: irtaq TgkiGdGkIFVfdVARVirIRTGEeD daai GLNB_RHILV : 82- 107: rkaaq TgriGdGkIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 83- 108: vgaar TekiGdGkIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 83- 108: vsasr TdkiGdGkIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 83- 108: vaaar TgeiGdGkIFVspVDQTirIRTGEkN adai NRGB_BACSU : 87- 112: krvlk TgspGdGkIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 83- 108: skaay TgkiGdGkIFVaeLQRVirIRTGDdE aacnl D 4: 53.3879 13( 13) D-G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 84- 104: tgnfg DGKIFIqpITEAytIRTGEtG i GLN2_METTL : 102- 122: tgsfg DGRIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 88- 108: tgrig DGKIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 87- 107: tgrig DGKIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 88- 108: tgkig DGKIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 88- 108: tgkig DGKIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 88- 108: tgkig DGKIFVfdVARVirIRTGEeD daai GLNB_RHILV : 87- 107: tgrig DGKIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 88- 108: tekig DGKIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 88- 108: tdkig DGKIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 88- 108: tgeig DGKIFVspVDQTirIRTGEkN adai NRGB_BACSU : 92- 112: tgspg DGKIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 88- 108: tgkig DGKIFVaeLQRVirIRTGDdE aacnl E 5: 49.6397 13( 13) G-x-G-x(0,1)-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 83- 104: stgnf GdGkIFIqpITEAytIRTGEtG i GLN2_METTL : 101- 122: rtgsf GdGrIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 87- 108: htgri GdGkIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 86- 107: qtgri GdGkIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 87- 108: qtgki GdGkIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 87- 108: qtgki GdGkIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 87- 108: qtgki GdGkIFVfdVARVirIRTGEeD daai GLNB_RHILV : 86- 107: qtgri GdGkIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 87- 108: rteki GdGkIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 87- 108: rtdki GdGkIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 87- 108: rtgei GdGkIFVspVDQTirIRTGEkN adai NRGB_BACSU : 91- 112: ktgsp GdGkIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 87- 108: ytgki GdGkIFVaeLQRVirIRTGDdE aacnl F 6: 49.2178 13( 13) G-[KR]-I-F-[IV]-x(2)-[ILV]-[ADEQST]-[ENQR]-[ATV]-x(2)-[IV]-R-T-G-[DE]-x-[DEGN] Occurences: 13(13) GLN1_METTL : 85- 104: gnfgd GKIFIqpITEAytIRTGEtG i GLN2_METTL : 103- 122: gsfgd GRIFVlpVEEAirVRTGEtG eiaig GLNB_AZOBR : 89- 108: grigd GKIFVtpVEEVvrIRTGEkG gdai GLNB_BRAJA : 88- 107: grigd GKIFVsnIEEAirIRTGEsG ldai GLNB_ECOLI : 89- 108: gkigd GKIFVfdVARVirIRTGEeD daai GLNB_HAEIN : 89- 108: gkigd GKIFVyhVERAirIRTGEeN edai GLNB_KLEPN : 89- 108: gkigd GKIFVfdVARVirIRTGEeD daai GLNB_RHILV : 88- 107: grigd GKIFVsnVEEVirIRTGEtG idai GLNB_RHOCA : 89- 108: ekigd GKIFVssIEQAirIRTGEtG edav GLNB_RHOSH : 89- 108: dkigd GKIFIspVEQAirIRTGEtG edav GLNB_SYNP7 : 89- 108: geigd GKIFVspVDQTirIRTGEkN adai NRGB_BACSU : 93- 112: gspgd GKIFVyeISNTinIRTGEeG peal YBAI_ECOLI : 89- 108: gkigd GKIFVaeLQRVirIRTGDdE aacnl G 7: 35.4070 13( 13) G-[DR]-G-K-x(2)-[GIV]-x(3)-[ADEQST]-[ENQR]-x(3)-I-x-[DT]-[GI]-[DEQ] Occurences: 13(13) GLN1_METTL : 83- 102: stgnf GDGKifIqpiTEaytIrTGE tgi GLN2_METTL : 35- 54: maecf GRGKqkGyfsANlpeIvDIQ kiiee GLNB_AZOBR : 87- 106: htgri GDGKifVtpvEEvvrIrTGE kggda GLNB_BRAJA : 86- 105: qtgri GDGKifVsniEEairIrTGE sglda GLNB_ECOLI : 87- 106: qtgki GDGKifVfdvARvirIrTGE eddaa GLNB_HAEIN : 87- 106: qtgki GDGKifVyhvERairIrTGE eneda GLNB_KLEPN : 87- 106: qtgki GDGKifVfdvARvirIrTGE eddaa GLNB_RHILV : 86- 105: qtgri GDGKifVsnvEEvirIrTGE tgida GLNB_RHOCA : 87- 106: rteki GDGKifVssiEQairIrTGE tgeda GLNB_RHOSH : 87- 106: rtdki GDGKifIspvEQairIrTGE tgeda GLNB_SYNP7 : 87- 106: rtgei GDGKifVspvDQtirIrTGE knada NRGB_BACSU : 91- 110: ktgsp GDGKifVyeiSNtinIrTGE egpea YBAI_ECOLI : 87- 106: ytgki GDGKifVaelQRvirIrTGD deaac H 8: 23.8398 20( 13) G-x(1,2)-G-[DKR]-[GQ]-K-[GI]-[FHY] Occurences: 20(13) GLN1_METTL : 80- 88: ssast GnfGDGKIF iqpit GLN2_METTL : 35- 42: maecf Gr-GKQKGY fsanl GLNB_AZOBR : 35- 42: vteak Gf-GRQKGH telyr GLNB_AZOBR : 84- 92: qaaht GriGDGKIF vtpve GLNB_BRAJA : 34- 41: vteak Gf-GRQKGH tdlyr GLNB_BRAJA : 83- 91: raaqt GriGDGKIF vsnie GLNB_ECOLI : 35- 42: vtevk Gf-GRQKGH telyr GLNB_ECOLI : 84- 92: rtaqt GkiGDGKIF vfdva GLNB_HAEIN : 35- 42: itevr Gf-GRQKGH telyr GLNB_HAEIN : 84- 92: etaqt GkiGDGKIF vyhve GLNB_KLEPN : 35- 42: vtevk Gf-GRQKGH telyr GLNB_KLEPN : 84- 92: rtaqt GkiGDGKIF vfdva GLNB_RHILV : 34- 41: vteak Gf-GRQKGH telyr GLNB_RHILV : 83- 91: kaaqt GriGDGKIF vsnve GLNB_RHOCA : 35- 42: vievk Gf-GRQKGH telyr GLNB_RHOSH : 35- 42: vtevk Gf-GRQKGH telyr GLNB_SYNP7 : 84- 92: aaart GeiGDGKIF vspvd NRGB_BACSU : 88- 96: rvlkt GspGDGKIF vyeis YBAI_ECOLI : 35- 42: vtevk Gf-GRQKGH aelyg YBAI_ECOLI : 84- 92: kaayt GkiGDGKIF vaelq I 9: 21.4573 18( 13) I-x(3)-[AGNST]-x-T-x(3,5)-G-x-G-x(3)-[AGIV]-x-[ADNPST] Occurences: 18(13) GLN1_METTL : 73- 91: evvgl IkssAsTgnf--GdGkifIqP iteay GLN2_METTL : 91- 109: lvvgi IskvNrTgsf--GdGrifVlP veeai GLNB_AZOBR : 25- 43: lhevg IkgiTvTeak--GfGrqkGhT elyrg GLNB_AZOBR : 77- 95: raiea IqqaAhTgri--GdGkifVtP veevv GLNB_BRAJA : 76- 94: raida IrraAqTgri--GdGkifVsN ieeai GLNB_ECOLI : 25- 43: laevg ItgmTvTevk--GfGrqkGhT elyrg GLNB_ECOLI : 77- 95: tcvdt IirtAqTgki--GdGkifVfD varvi GLNB_HAEIN : 23- 43: eslsd IgisGmTitevrGfGrqkGhT elyrg GLNB_HAEIN : 25- 43: lsdig IsgmTiTevr--GfGrqkGhT elyrg GLNB_KLEPN : 25- 43: laevg ItgmTvTevk--GfGrqkGhT elyrg GLNB_KLEPN : 77- 95: tcvdt IirtAqTgki--GdGkifVfD varvi GLNB_RHILV : 76- 94: aviea IrkaAqTgri--GdGkifVsN veevi GLNB_RHOCA : 77- 95: iaiea IvgaArTeki--GdGkifVsS ieqai GLNB_RHOSH : 77- 95: aavea IvsaSrTdki--GdGkifIsP veqai GLNB_SYNP7 : 77- 95: tvidk IvaaArTgei--GdGkifVsP vdqti NRGB_BACSU : 27- 47: qelgk IgvtSlTfsnvhGcGlqkAhT elyrg YBAI_ECOLI : 23- 43: ealss IgiqGlTvtevkGfGrqkGhA elygg YBAI_ECOLI : 25- 43: lssig IqglTvTevk--GfGrqkGhA elygg J 10: 20.7762 22( 13) I-R-x(0,2)-T-G-x(0,2)-E-x-[ADGNP] Occurences: 22(13) GLN1_METTL : 98- 104: teayt IR--TG--EtG i GLN2_METTL : 114- 122: pveea IRvrTG--EtG eiaig GLNB_AZOBR : 102- 108: eevvr IR--TG--EkG gdai GLNB_BRAJA : 99- 107: nieea IRirTG--EsG ldai GLNB_BRAJA : 101- 107: eeair IR--TG--EsG ldai GLNB_ECOLI : 100- 108: dvarv IRirTG--EeD daai GLNB_ECOLI : 100- 109: dvarv IRirTGe-EdD aai GLNB_ECOLI : 102- 108: arvir IR--TG--EeD daai GLNB_ECOLI : 102- 109: arvir IR--TGe-EdD aai GLNB_HAEIN : 100- 108: hvera IRirTG--EeN edai GLNB_HAEIN : 102- 108: erair IR--TG--EeN edai GLNB_KLEPN : 100- 108: dvarv IRirTG--EeD daai GLNB_KLEPN : 100- 109: dvarv IRirTGe-EdD aai GLNB_KLEPN : 102- 108: arvir IR--TG--EeD daai GLNB_KLEPN : 102- 109: arvir IR--TGe-EdD aai GLNB_RHILV : 99- 107: nveev IRirTG--EtG idai GLNB_RHILV : 101- 107: eevir IR--TG--EtG idai GLNB_RHOCA : 100- 108: sieqa IRirTG--EtG edav GLNB_RHOCA : 102- 108: eqair IR--TG--EtG edav GLNB_RHOSH : 100- 108: pveqa IRirTG--EtG edav GLNB_RHOSH : 102- 108: eqair IR--TG--EtG edav GLNB_SYNP7 : 100- 108: pvdqt IRirTG--EkN adai GLNB_SYNP7 : 102- 108: dqtir IR--TG--EkN adai NRGB_BACSU : 106- 112: sntin IR--TG--EeG peal NRGB_BACSU : 106- 113: sntin IR--TGe-EgP eal YBAI_ECOLI : 100- 110: elqrv IRirTGddEaA cnlwh YBAI_ECOLI : 102- 110: qrvir IR--TGddEaA cnlwh K 11: 19.3503 16( 13) T-G-x(2)-G-x(0,1)-D-[AG] Occurences: 16(13) GLN1_METTL : 79- 85: kssas TGnfG-DG kifiq GLN2_METTL : 97- 103: skvnr TGsfG-DG rifvl GLNB_AZOBR : 83- 89: qqaah TGriG-DG kifvt GLNB_AZOBR : 104- 111: vvrir TGekGgDA i GLNB_BRAJA : 82- 88: rraaq TGriG-DG kifvs GLNB_BRAJA : 103- 110: airir TGesGlDA i GLNB_ECOLI : 83- 89: irtaq TGkiG-DG kifvf GLNB_HAEIN : 83- 89: ietaq TGkiG-DG kifvy GLNB_KLEPN : 83- 89: irtaq TGkiG-DG kifvf GLNB_RHILV : 82- 88: rkaaq TGriG-DG kifvs GLNB_RHILV : 103- 110: virir TGetGiDA i GLNB_RHOCA : 104- 111: airir TGetGeDA v GLNB_RHOSH : 104- 111: airir TGetGeDA v GLNB_SYNP7 : 83- 89: vaaar TGeiG-DG kifvs NRGB_BACSU : 87- 93: krvlk TGspG-DG kifvy YBAI_ECOLI : 83- 89: skaay TGkiG-DG kifva L 12: 17.6062 14( 13) R-T-G-x(0,2)-E-x-[ADGNP] Occurences: 14(13) GLN1_METTL : 99- 104: eayti RTG--EtG i GLN2_METTL : 117- 122: eairv RTG--EtG eiaig GLNB_AZOBR : 103- 108: evvri RTG--EkG gdai GLNB_BRAJA : 102- 107: eairi RTG--EsG ldai GLNB_ECOLI : 103- 108: rviri RTG--EeD daai GLNB_ECOLI : 103- 109: rviri RTGe-EdD aai GLNB_HAEIN : 103- 108: rairi RTG--EeN edai GLNB_KLEPN : 103- 108: rviri RTG--EeD daai GLNB_KLEPN : 103- 109: rviri RTGe-EdD aai GLNB_RHILV : 102- 107: eviri RTG--EtG idai GLNB_RHOCA : 103- 108: qairi RTG--EtG edav GLNB_RHOSH : 103- 108: qairi RTG--EtG edav GLNB_SYNP7 : 82- 87: ivaaa RTG--EiG dgkif GLNB_SYNP7 : 103- 108: qtiri RTG--EkN adai NRGB_BACSU : 107- 112: ntini RTG--EeG peal NRGB_BACSU : 107- 113: ntini RTGe-EgP eal YBAI_ECOLI : 103- 110: rviri RTGddEaA cnlwh M 13: 15.1803 16( 13) G-x(2)-G-x(0,1)-D-[AG] Occurences: 16(13) GLN1_METTL : 80- 85: ssast GnfG-DG kifiq GLN2_METTL : 98- 103: kvnrt GsfG-DG rifvl GLNB_AZOBR : 84- 89: qaaht GriG-DG kifvt GLNB_AZOBR : 105- 111: vrirt GekGgDA i GLNB_BRAJA : 83- 88: raaqt GriG-DG kifvs GLNB_BRAJA : 104- 110: irirt GesGlDA i GLNB_ECOLI : 84- 89: rtaqt GkiG-DG kifvf GLNB_HAEIN : 84- 89: etaqt GkiG-DG kifvy GLNB_KLEPN : 84- 89: rtaqt GkiG-DG kifvf GLNB_RHILV : 83- 88: kaaqt GriG-DG kifvs GLNB_RHILV : 104- 110: irirt GetGiDA i GLNB_RHOCA : 105- 111: irirt GetGeDA v GLNB_RHOSH : 105- 111: irirt GetGeDA v GLNB_SYNP7 : 84- 89: aaart GeiG-DG kifvs NRGB_BACSU : 88- 93: rvlkt GspG-DG kifvy YBAI_ECOLI : 84- 89: kaayt GkiG-DG kifva N 14: 15.1654 16( 13) I-x-[GIPV]-x-T-x(0,2)-E-[ADGNSTV] Occurences: 16(13) GLN1_METTL : 89- 95: dgkif IqPiT--EA ytirt GLN2_METTL : 114- 121: pveea IrVrTg-ET geiai GLNB_AZOBR : 25- 33: lhevg IkGiTvtEA kgfgr GLNB_BRAJA : 99- 106: nieea IrIrTg-ES gldai GLNB_ECOLI : 25- 33: laevg ItGmTvtEV kgfgr GLNB_ECOLI : 100- 108: dvarv IrIrTgeED daai GLNB_HAEIN : 25- 33: lsdig IsGmTitEV rgfgr GLNB_HAEIN : 100- 108: hvera IrIrTgeEN edai GLNB_KLEPN : 25- 33: laevg ItGmTvtEV kgfgr GLNB_KLEPN : 100- 108: dvarv IrIrTgeED daai GLNB_RHILV : 99- 106: nveev IrIrTg-ET gidai GLNB_RHOCA : 100- 107: sieqa IrIrTg-ET gedav GLNB_RHOSH : 100- 107: pveqa IrIrTg-ET gedav GLNB_SYNP7 : 25- 33: lvnag IvGmTvsEV rgfgr NRGB_BACSU : 104- 112: eisnt InIrTgeEG peal YBAI_ECOLI : 25- 33: lssig IqGlTvtEV kgfgr O 15: 14.1091 13( 13) G-x(0,1)-G-x(1,2)-K-[AGV] Occurences: 13(13) GLN1_METTL : 40- 44: grgkq G-Gl-KV geify GLN2_METTL : 35- 41: maecf GrGkqKG yfsan GLNB_AZOBR : 35- 41: vteak GfGrqKG htely GLNB_BRAJA : 34- 40: vteak GfGrqKG htdly GLNB_ECOLI : 35- 41: vtevk GfGrqKG htely GLNB_HAEIN : 35- 41: itevr GfGrqKG htely GLNB_KLEPN : 35- 41: vtevk GfGrqKG htely GLNB_RHILV : 34- 40: vteak GfGrqKG htely GLNB_RHOCA : 35- 41: vievk GfGrqKG htely GLNB_RHOSH : 35- 41: vtevk GfGrqKG htely GLNB_SYNP7 : 35- 41: vsevr GfGrqKG qtery NRGB_BACSU : 39- 45: fsnvh GcGlqKA htely YBAI_ECOLI : 35- 41: vtevk GfGrqKG haely P 16: 13.9263 20( 13) G-x(3,4)-T-x(3)-[ACGSV]-x-G Occurences: 20(13) GLN1_METTL : 24- 35: slena GypafTkinSvG rgkqg GLN2_METTL : 24- 35: aldvv GfpavTmaeCfG rgkqk GLNB_AZOBR : 24- 35: alhev GikgiTvteAkG fgrqk GLNB_AZOBR : 27- 37: evgik Gitv-TeakGfG rqkgh GLNB_BRAJA : 23- 34: slsgv GlqgiTvteAkG fgrqk GLNB_BRAJA : 26- 36: gvglq Gitv-TeakGfG rqkgh GLNB_ECOLI : 24- 35: alaev GitgmTvteVkG fgrqk GLNB_ECOLI : 27- 37: evgit Gmtv-TevkGfG rqkgh GLNB_HAEIN : 24- 35: slsdi GisgmTiteVrG fgrqk GLNB_HAEIN : 27- 37: digis Gmti-TevrGfG rqkgh GLNB_KLEPN : 24- 35: alaev GitgmTvteVkG fgrqk GLNB_KLEPN : 27- 37: evgit Gmtv-TevkGfG rqkgh GLNB_RHILV : 23- 34: spsgv GlqgiTvteAkG fgrqk GLNB_RHILV : 26- 36: gvglq Gitv-TeakGfG rqkgh GLNB_RHOCA : 79- 89: ieaiv Gaar-TekiGdG kifvs GLNB_RHOSH : 27- 37: aagvq Glsv-TevkGfG rqkgh GLNB_SYNP7 : 24- 35: alvna GivgmTvseVrG fgrqk NRGB_BACSU : 28- 39: elgki GvtslTfsnVhG cglqk YBAI_ECOLI : 24- 35: alssi GiqglTvteVkG fgrqk YBAI_ECOLI : 27- 37: sigiq Gltv-TevkGfG rqkgh Q 17: 13.7647 17( 13) T-G-x(0,2)-E-x-[ADGN] Occurences: 17(13) GLN1_METTL : 100- 104: aytir TG--EtG i GLN2_METTL : 118- 122: airvr TG--EtG eiaig GLN2_METTL : 121- 125: vrtge TG--EiA ign GLNB_AZOBR : 104- 108: vvrir TG--EkG gdai GLNB_BRAJA : 103- 107: airir TG--EsG ldai GLNB_ECOLI : 104- 108: virir TG--EeD daai GLNB_ECOLI : 104- 109: virir TGe-EdD aai GLNB_HAEIN : 104- 108: airir TG--EeN edai GLNB_KLEPN : 104- 108: virir TG--EeD daai GLNB_KLEPN : 104- 109: virir TGe-EdD aai GLNB_RHILV : 103- 107: virir TG--EtG idai GLNB_RHOCA : 104- 108: airir TG--EtG edav GLNB_RHOCA : 107- 111: irtge TG--EdA v GLNB_RHOSH : 104- 108: airir TG--EtG edav GLNB_RHOSH : 107- 111: irtge TG--EdA v GLNB_SYNP7 : 83- 87: vaaar TG--EiG dgkif GLNB_SYNP7 : 104- 108: tirir TG--EkN adai NRGB_BACSU : 108- 112: tinir TG--EeG peal YBAI_ECOLI : 104- 110: virir TGddEaA cnlwh R 18: 13.4109 19( 13) I-x(3)-[AGNST]-x-T-x(3,5)-G Occurences: 19(13) GLN1_METTL : 73- 83: evvgl IkssAsTgnf--G dgkif GLN2_METTL : 91- 101: lvvgi IskvNrTgsf--G dgrif GLNB_AZOBR : 25- 35: lhevg IkgiTvTeak--G fgrqk GLNB_AZOBR : 77- 87: raiea IqqaAhTgri--G dgkif GLNB_BRAJA : 76- 86: raida IrraAqTgri--G dgkif GLNB_ECOLI : 25- 35: laevg ItgmTvTevk--G fgrqk GLNB_ECOLI : 77- 87: tcvdt IirtAqTgki--G dgkif GLNB_HAEIN : 23- 35: eslsd IgisGmTitevrG fgrqk GLNB_HAEIN : 25- 35: lsdig IsgmTiTevr--G fgrqk GLNB_HAEIN : 77- 87: qciea IietAqTgki--G dgkif GLNB_KLEPN : 25- 35: laevg ItgmTvTevk--G fgrqk GLNB_KLEPN : 77- 87: tcvdt IirtAqTgki--G dgkif GLNB_RHILV : 76- 86: aviea IrkaAqTgri--G dgkif GLNB_RHOCA : 77- 87: iaiea IvgaArTeki--G dgkif GLNB_RHOSH : 77- 87: aavea IvsaSrTdki--G dgkif GLNB_SYNP7 : 77- 87: tvidk IvaaArTgei--G dgkif NRGB_BACSU : 27- 39: qelgk IgvtSlTfsnvhG cglqk YBAI_ECOLI : 23- 35: ealss IgiqGlTvtevkG fgrqk YBAI_ECOLI : 25- 35: lssig IqglTvTevk--G fgrqk S 19: 11.5102 20( 12) I-R-x(0,2)-T Occurences: 20(12) GLN1_METTL : 98- 100: teayt IR--T getgi GLN2_METTL : 114- 118: pveea IRvrT getge GLNB_AZOBR : 102- 104: eevvr IR--T gekgg GLNB_BRAJA : 99- 103: nieea IRirT gesgl GLNB_BRAJA : 101- 103: eeair IR--T gesgl GLNB_ECOLI : 100- 104: dvarv IRirT geedd GLNB_ECOLI : 102- 104: arvir IR--T geedd GLNB_HAEIN : 100- 104: hvera IRirT geene GLNB_HAEIN : 102- 104: erair IR--T geene GLNB_KLEPN : 100- 104: dvarv IRirT geedd GLNB_KLEPN : 102- 104: arvir IR--T geedd GLNB_RHILV : 99- 103: nveev IRirT getgi GLNB_RHILV : 101- 103: eevir IR--T getgi GLNB_RHOCA : 100- 104: sieqa IRirT getge GLNB_RHOCA : 102- 104: eqair IR--T getge GLNB_RHOSH : 100- 104: pveqa IRirT getge GLNB_RHOSH : 102- 104: eqair IR--T getge GLNB_SYNP7 : 100- 104: pvdqt IRirT gekna GLNB_SYNP7 : 102- 104: dqtir IR--T gekna NRGB_BACSU : 106- 108: sntin IR--T geegp T 20: 11.5102 14( 13) T-x(0,2)-I-x(2)-G Occurences: 14(13) GLN1_METTL : 97- 101: iteay T--IrtG etgi GLN2_METTL : 121- 127: vrtge TgeIaiG n GLNB_AZOBR : 83- 89: qqaah TgrIgdG kifvt GLNB_BRAJA : 82- 88: rraaq TgrIgdG kifvs GLNB_ECOLI : 83- 89: irtaq TgkIgdG kifvf GLNB_HAEIN : 83- 89: ietaq TgkIgdG kifvy GLNB_KLEPN : 83- 89: irtaq TgkIgdG kifvf GLNB_RHILV : 82- 88: rkaaq TgrIgdG kifvs GLNB_RHOCA : 83- 89: vgaar TekIgdG kifvs GLNB_RHOSH : 83- 89: vsasr TdkIgdG kifis GLNB_SYNP7 : 83- 89: vaaar TgeIgdG kifvs GLNB_SYNP7 : 99- 105: spvdq TirIrtG eknad NRGB_BACSU : 103- 109: yeisn TinIrtG eegpe YBAI_ECOLI : 83- 89: skaay TgkIgdG kifva Number of patterns evaluated by Pratt:677 Total running time: 1 seconds