------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file PHYTOENE_DH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PHYTOENE_DH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CRTD_RHOCA 494 CRTD_RHOSH 495 CRTI_ERWHE 492 CRTI_ERWUR 492 CRTI_MYXXA 529 CRTI_NEUCR 595 CRTI_RHOCA 524 Pratt run started at Thu Feb 6 20:41:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.5203 9( 7) V-x(0,1)-G-A-x(2)-G-G-x(3)-A 2: 20.8503 7( 7) G-x(3)-H-P-G-x-G 3: 19.8503 10( 7) A-G-x(1,2)-G-x(4)-A-x(3,4)-A 4: 19.8503 16( 7) G-x(1,3)-H-P-G-x-G 5: 19.8503 7( 7) L-x(3)-G-x(1,2)-G-x(2)-P-x(2,3)-G 6: 19.8503 8( 7) G-x(2)-A-x(0,1)-A-x(2)-L-x(0,1)-A 7: 19.8503 8( 7) A-G-x(0,1)-G-G-x(3,4)-A 8: 19.8503 7( 7) A-x(2)-G-G-x(1,2)-A-x(0,1)-A 9: 19.8503 8( 7) A-x(3)-G-x(1,2)-A-x(0,1)-A-x(2)-L 10: 19.8503 8( 7) G-x(3)-G-G-x(1,2)-A-x(0,1)-A 11: 19.3503 12( 7) V-x(0,1)-G-A-x(0,2)-G-x(4)-A 12: 19.3503 7( 7) V-x-A-G-x(2,3)-G-x(0,2)-A 13: 19.3503 8( 7) G-x-G-x(1,3)-G-x(0,1)-G-x(3)-A 14: 19.3503 11( 7) V-x(1,2)-G-A-x(0,2)-G-x(4)-A 15: 16.6802 7( 7) H-P-G-x-G 16: 16.1802 7( 7) A-x-A-x-R-x(4,5)-G 17: 15.6802 8( 7) A-x(2)-G-x(0,1)-L-x(4,5)-L 18: 15.6802 9( 7) A-x(2,3)-G-L-x(4,5)-L 19: 15.6802 7( 7) G-x(3)-A-x(0,1)-A-x(1,2)-L 20: 15.6802 10( 7) G-x(2)-G-x(1,2)-A-x(0,1)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 71.1166 9( 7) V-x(0,1)-G-A-x(2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] B 2: 70.1166 9( 7) V-x(0,1)-G-A-x(0,2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] C 3: 70.1166 11( 7) V-x(1,2)-G-A-x(0,2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] D 4: 60.2111 7( 7) G-[AG]-[GS]-[AT]-H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] E 5: 50.0301 7( 7) G-[AG]-G-x(1,3)-G-x(0,1)-G-[ILV]-[APS]-x-A-x(3)-[AGQ]-x(2)-[AG]-x(2)-[ATV]-x-[LV]-[ALV]-[DE]-x(2)-[ADS]-x-[APST] F 6: 49.6625 16( 7) G-x(1,3)-H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] G 7: 46.4924 7( 7) H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] H 8: 35.1219 7( 7) V-[EG]-A-G-x(2,3)-G-x(0,2)-A-x-[AIV]-x(3)-[AGIPV]-x-[AGS]-x(3)-[TV]-[AGTV] I 9: 34.1897 7( 7) A-x(2)-G-x(0,1)-L-x(4,5)-L-x(3)-[EG]-x(4)-[ALPV]-x(4)-[ADET]-x(2)-[GNS]-[GL]-x(3)-[AGSTV]-x(4)-[AG] J 10: 34.1897 7( 7) A-x(2,3)-G-L-x(4,5)-L-x(3)-[EG]-x(4)-[ALPV]-x(4)-[ADET]-x(2)-[GNS]-[GL]-x(3)-[AGSTV]-x(4)-[AG] K 11: 30.5948 7( 7) G-A-x(2)-G-G-x(1,2)-A-x(0,1)-A-[AI]-x(4)-[AQ] L 12: 28.4065 7( 7) L-x(2)-[AGV]-G-x(1,2)-G-x-[HK]-P-x(2,3)-G-[ILV] M 13: 26.4247 7( 7) A-x(2)-G-G-x(1,2)-A-x(0,1)-A-[AI]-x(4)-[AQ] N 14: 26.2011 7( 7) A-[GL]-x-[GS]-G-x(1,2)-A-x(0,1)-A-x(2)-L O 15: 23.0677 8( 7) A-G-x(0,1)-G-G-x(3,4)-A-x(2)-[LP] P 16: 22.4436 8( 7) A-G-x(1,2)-G-x(3)-[AGS]-A-x(3,4)-A Q 17: 19.8503 8( 7) G-x(2)-A-x(0,1)-A-x(2)-L-x(0,1)-A R 18: 19.3503 7( 7) V-x-A-G-x(2,3)-G-x(0,2)-A S 19: 19.3503 8( 7) G-x-G-x(1,3)-G-x(0,1)-G-x(3)-A T 20: 19.3503 11( 7) V-x(1,2)-G-A-x(0,2)-G-x(4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 71.1166 9( 7) V-x(0,1)-G-A-x(2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] Occurences: 9(7) CRTD_RHOCA : 9- 42: etdvv ViGArmGGLAaAigAAaaGlrVtVVEagDaPGGK aravp CRTD_RHOSH : 10- 43: vpkvv VvGAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTD_RHOSH : 11- 43: pkvvv V-GAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTI_ERWHE : 6- 39: mkktv ViGAgfGGLAlAirLQaaGipTvLLEqrDkPGGR ayvwh CRTI_ERWUR : 6- 39: mkptt ViGAgfGGLAlAirLQaaGipVlLLEqrDkPGGR ayvye CRTI_MYXXA : 13- 46: vrhvi VvGAgpGGLSaAinLAgqGfrVtVVEkdAvPGGR mkglt CRTI_MYXXA : 14- 46: rhviv V-GAgpGGLSaAinLAgqGfrVtVVEkdAvPGGR mkglt CRTI_NEUCR : 13- 45: rsaii V-GAgaGGIAvAarLAkaGvdVtVLEknDfTGGR cslih CRTI_RHOCA : 13- 46: mgrav ViGAglGGLAaAmrLGakGykVtVVDrlDrPGGR gssit B 2: 70.1166 9( 7) V-x(0,1)-G-A-x(0,2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] Occurences: 9(7) CRTD_RHOCA : 9- 42: etdvv ViGArmGGLAaAigAAaaGlrVtVVEagDaPGGK aravp CRTD_RHOSH : 10- 43: vpkvv VvGAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTD_RHOSH : 11- 43: pkvvv V-GAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTI_ERWHE : 6- 39: mkktv ViGAgfGGLAlAirLQaaGipTvLLEqrDkPGGR ayvwh CRTI_ERWUR : 6- 39: mkptt ViGAgfGGLAlAirLQaaGipVlLLEqrDkPGGR ayvye CRTI_MYXXA : 13- 46: vrhvi VvGAgpGGLSaAinLAgqGfrVtVVEkdAvPGGR mkglt CRTI_MYXXA : 14- 46: rhviv V-GAgpGGLSaAinLAgqGfrVtVVEkdAvPGGR mkglt CRTI_NEUCR : 13- 45: rsaii V-GAgaGGIAvAarLAkaGvdVtVLEknDfTGGR cslih CRTI_RHOCA : 13- 46: mgrav ViGAglGGLAaAmrLGakGykVtVVDrlDrPGGR gssit C 3: 70.1166 11( 7) V-x(1,2)-G-A-x(0,2)-G-G-[IL]-[AS]-x-A-x(2)-[AL]-[AGQ]-x(2)-G-x(2)-[TV]-x-[LV]-[LV]-[DE]-x(2)-[ADE]-x-[PT]-G-G-[KR] Occurences: 11(7) CRTD_RHOCA : 8- 42: setdv VviGArmGGLAaAigAAaaGlrVtVVEagDaPGGK aravp CRTD_RHOCA : 9- 42: etdvv Vi-GArmGGLAaAigAAaaGlrVtVVEagDaPGGK aravp CRTD_RHOSH : 9- 43: ivpkv VvvGAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTD_RHOSH : 10- 43: vpkvv Vv-GAgmGGLAsAirLAraGceVtLLEarEaPGGR mrtlp CRTI_ERWHE : 5- 39: mkkt VviGAgfGGLAlAirLQaaGipTvLLEqrDkPGGR ayvwh CRTI_ERWHE : 6- 39: mkktv Vi-GAgfGGLAlAirLQaaGipTvLLEqrDkPGGR ayvwh CRTI_ERWUR : 6- 39: mkptt Vi-GAgfGGLAlAirLQaaGipVlLLEqrDkPGGR ayvye CRTI_MYXXA : 13- 46: vrhvi Vv-GAgpGGLSaAinLAgqGfrVtVVEkdAvPGGR mkglt CRTI_NEUCR : 13- 45: rsaii VgaGA--GGIAvAarLAkaGvdVtVLEknDfTGGR cslih CRTI_RHOCA : 12- 46: gmgra VviGAglGGLAaAmrLGakGykVtVVDrlDrPGGR gssit CRTI_RHOCA : 13- 46: mgrav Vi-GAglGGLAaAmrLGakGykVtVVDrlDrPGGR gssit D 4: 60.2111 7( 7) G-[AG]-[GS]-[AT]-H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] Occurences: 7(7) CRTD_RHOCA : 462- 488: glyla GGGTHPGAGVPmAltSGthAAraLlaD risaa CRTD_RHOSH : 463- 489: glwla GGGAHPGAGVPmAalSGrhAAeaIlaD lasrs CRTI_ERWHE : 464- 490: nlylv GAGTHPGAGIPgVvaSAkaTAslMieD lq CRTI_ERWUR : 464- 490: nlylv GAGTHPGAGIPgVigSAkaTAglMleD li CRTI_MYXXA : 477- 503: glyfv GGGTHPGSGLLtImeSAniAAdyLtrE agkgp CRTI_NEUCR : 486- 512: nayfv GASTHPGTGVPiVlaGAkiTAeqIleE tfpkn CRTI_RHOCA : 476- 502: glylv GAGTHPGAGVPsVigSGelVAqmIpdA pkpet E 5: 50.0301 7( 7) G-[AG]-G-x(1,3)-G-x(0,1)-G-[ILV]-[APS]-x-A-x(3)-[AGQ]-x(2)-[AG]-x(2)-[ATV]-x-[LV]-[ALV]-[DE]-x(2)-[ADS]-x-[APST] Occurences: 7(7) CRTD_RHOCA : 462- 493: glyla GGGthpGaGVPmAltsGthAarAlLADriSaA k CRTD_RHOSH : 463- 494: glwla GGGahpGaGVPmAalsGrhAaeAiLADlaSrS r CRTI_ERWHE : 8- 36: ktvvi GAGf--G-GLAlAirlQaaGipTvLLEqrDkP ggray CRTI_ERWUR : 8- 36: pttvi GAGf--G-GLAlAirlQaaGipVlLLEqrDkP ggray CRTI_MYXXA : 15- 43: hvivv GAGp--G-GLSaAinlAgqGfrVtVVEkdAvP ggrmk CRTI_NEUCR : 14- 42: saiiv GAGa--G-GIAvAarlAkaGvdVtVLEknDfT ggrcs CRTI_RHOCA : 15- 43: ravvi GAGl--G-GLAaAmrlGakGykVtVVDrlDrP ggrgs F 6: 49.6625 16( 7) G-x(1,3)-H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] Occurences: 16(7) CRTD_RHOCA : 462- 488: glyla GggtHPGAGVPmAltSGthAAraLlaD risaa CRTD_RHOCA : 463- 488: lylag Ggt-HPGAGVPmAltSGthAAraLlaD risaa CRTD_RHOCA : 464- 488: ylagg Gt--HPGAGVPmAltSGthAAraLlaD risaa CRTD_RHOSH : 463- 489: glwla GggaHPGAGVPmAalSGrhAAeaIlaD lasrs CRTD_RHOSH : 464- 489: lwlag Gga-HPGAGVPmAalSGrhAAeaIlaD lasrs CRTD_RHOSH : 465- 489: wlagg Ga--HPGAGVPmAalSGrhAAeaIlaD lasrs CRTI_ERWHE : 464- 490: nlylv GagtHPGAGIPgVvaSAkaTAslMieD lq CRTI_ERWHE : 466- 490: ylvga Gt--HPGAGIPgVvaSAkaTAslMieD lq CRTI_ERWUR : 464- 490: nlylv GagtHPGAGIPgVigSAkaTAglMleD li CRTI_ERWUR : 466- 490: ylvga Gt--HPGAGIPgVigSAkaTAglMleD li CRTI_MYXXA : 477- 503: glyfv GggtHPGSGLLtImeSAniAAdyLtrE agkgp CRTI_MYXXA : 478- 503: lyfvg Ggt-HPGSGLLtImeSAniAAdyLtrE agkgp CRTI_MYXXA : 479- 503: yfvgg Gt--HPGSGLLtImeSAniAAdyLtrE agkgp CRTI_NEUCR : 486- 512: nayfv GastHPGTGVPiVlaGAkiTAeqIleE tfpkn CRTI_RHOCA : 476- 502: glylv GagtHPGAGVPsVigSGelVAqmIpdA pkpet CRTI_RHOCA : 478- 502: ylvga Gt--HPGAGVPsVigSGelVAqmIpdA pkpet G 7: 46.4924 7( 7) H-P-G-[AST]-G-[ILV]-[LP]-x-[AIV]-x(2)-[GS]-[AG]-x(2)-[ATV]-A-x(2)-[ILM]-x(2)-[ADE] Occurences: 7(7) CRTD_RHOCA : 466- 488: agggt HPGAGVPmAltSGthAAraLlaD risaa CRTD_RHOSH : 467- 489: aggga HPGAGVPmAalSGrhAAeaIlaD lasrs CRTI_ERWHE : 468- 490: vgagt HPGAGIPgVvaSAkaTAslMieD lq CRTI_ERWUR : 468- 490: vgagt HPGAGIPgVigSAkaTAglMleD li CRTI_MYXXA : 481- 503: vgggt HPGSGLLtImeSAniAAdyLtrE agkgp CRTI_NEUCR : 490- 512: vgast HPGTGVPiVlaGAkiTAeqIleE tfpkn CRTI_RHOCA : 480- 502: vgagt HPGAGVPsVigSGelVAqmIpdA pkpet H 8: 35.1219 7( 7) V-[EG]-A-G-x(2,3)-G-x(0,2)-A-x-[AIV]-x(3)-[AGIPV]-x-[AGS]-x(3)-[TV]-[AGTV] Occurences: 7(7) CRTD_RHOCA : 33- 56: lrvtv VEAGdapGgkArAvptPgGpadTG ptvlt CRTD_RHOSH : 11- 32: pkvvv VGAGmg-Gl-AsAirlArAgceVT llear CRTI_ERWHE : 463- 484: anlyl VGAGthpG--AgIpgvVaSakaTA slmie CRTI_ERWUR : 463- 484: tnlyl VGAGthpG--AgIpgvIgSakaTA glmle CRTI_MYXXA : 14- 36: rhviv VGAGpg-GlsAaInlaGqGfrvTV vekda CRTI_NEUCR : 13- 34: rsaii VGAGag-Gi-AvAarlAkAgvdVT vlekn CRTI_RHOCA : 475- 496: dglyl VGAGthpG--AgVpsvIgSgelVA qmipd I 9: 34.1897 7( 7) A-x(2)-G-x(0,1)-L-x(4,5)-L-x(3)-[EG]-x(4)-[ALPV]-x(4)-[ADET]-x(2)-[GNS]-[GL]-x(3)-[AGSTV]-x(4)-[AG] Occurences: 7(7) CRTD_RHOCA : 451- 487: frrpl ArtG-Lkgly-LaggGthpgAgvpmAltSGthaArallA drisa CRTD_RHOSH : 13- 51: vvvvg AgmGgLasairLaraGcevtLlearEapGGrmrTlpsvA gpvda CRTI_ERWHE : 9- 47: tvvig AgfGgLalairLqaaGiptvLleqrDkpGGrayVwhdqG ftfda CRTI_ERWUR : 9- 47: ttvig AgfGgLalairLqaaGipvlLleqrDkpGGrayVyedqG ftfda CRTI_MYXXA : 16- 54: vivvg AgpGgLsaainLagqGfrvtVvekdAvpGGrmkGltlgA sgeya CRTI_NEUCR : 425- 461: latiq ArtG-Lslsp-LiteEivntPytweTkfNLskgAilglA hdffn CRTI_RHOCA : 16- 54: avvig AglGgLaaamrLgakGykvtVvdrlDrpGGrgsSitkgG hrfdl J 10: 34.1897 7( 7) A-x(2,3)-G-L-x(4,5)-L-x(3)-[EG]-x(4)-[ALPV]-x(4)-[ADET]-x(2)-[GNS]-[GL]-x(3)-[AGSTV]-x(4)-[AG] Occurences: 7(7) CRTD_RHOCA : 451- 487: frrpl Art-GLkgly-LaggGthpgAgvpmAltSGthaArallA drisa CRTD_RHOSH : 13- 51: vvvvg AgmgGLasairLaraGcevtLlearEapGGrmrTlpsvA gpvda CRTI_ERWHE : 9- 47: tvvig AgfgGLalairLqaaGiptvLleqrDkpGGrayVwhdqG ftfda CRTI_ERWUR : 9- 47: ttvig AgfgGLalairLqaaGipvlLleqrDkpGGrayVyedqG ftfda CRTI_MYXXA : 16- 54: vivvg AgpgGLsaainLagqGfrvtVvekdAvpGGrmkGltlgA sgeya CRTI_NEUCR : 425- 461: latiq Art-GLslsp-LiteEivntPytweTkfNLskgAilglA hdffn CRTI_RHOCA : 16- 54: avvig AglgGLaaamrLgakGykvtVvdrlDrpGGrgsSitkgG hrfdl K 11: 30.5948 7( 7) G-A-x(2)-G-G-x(1,2)-A-x(0,1)-A-[AI]-x(4)-[AQ] Occurences: 7(7) CRTD_RHOCA : 11- 25: dvvvi GArmGGl-A-AAigaaA aglrv CRTD_RHOCA : 11- 26: dvvvi GArmGGlaA-AIgaaaA glrvt CRTD_RHOCA : 11- 26: dvvvi GArmGGl-AaAIgaaaA glrvt CRTD_RHOSH : 12- 27: kvvvv GAgmGGl-AsAIrlarA gcevt CRTI_ERWHE : 8- 23: ktvvi GAgfGGl-AlAIrlqaA giptv CRTI_ERWUR : 8- 23: pttvi GAgfGGl-AlAIrlqaA gipvl CRTI_MYXXA : 15- 30: hvivv GAgpGGlsA-AInlagQ gfrvt CRTI_NEUCR : 14- 29: saiiv GAgaGGi-AvAArlakA gvdvt CRTI_RHOCA : 15- 29: ravvi GAglGGl-A-AAmrlgA kgykv L 12: 28.4065 7( 7) L-x(2)-[AGV]-G-x(1,2)-G-x-[HK]-P-x(2,3)-G-[ILV] Occurences: 7(7) CRTD_RHOCA : 458- 471: tglkg LylAGg-GtHPga-GV pmalt CRTD_RHOSH : 459- 472: talpg LwlAGg-GaHPga-GV pmaal CRTI_ERWHE : 460- 473: sdian LylVGa-GtHPga-GI pgvva CRTI_ERWUR : 460- 473: ktitn LylVGa-GtHPga-GI pgvig CRTI_MYXXA : 473- 486: rdieg LyfVGg-GtHPgs-GL ltime CRTI_NEUCR : 260- 275: gvsqv LtdGGknGkKPkatGV qleng CRTI_RHOCA : 472- 485: eevdg LylVGa-GtHPga-GV psvig M 13: 26.4247 7( 7) A-x(2)-G-G-x(1,2)-A-x(0,1)-A-[AI]-x(4)-[AQ] Occurences: 7(7) CRTD_RHOCA : 12- 25: vvvig ArmGGl-A-AAigaaA aglrv CRTD_RHOCA : 12- 26: vvvig ArmGGlaA-AIgaaaA glrvt CRTD_RHOCA : 12- 26: vvvig ArmGGl-AaAIgaaaA glrvt CRTD_RHOSH : 13- 27: vvvvg AgmGGl-AsAIrlarA gcevt CRTI_ERWHE : 9- 23: tvvig AgfGGl-AlAIrlqaA giptv CRTI_ERWUR : 9- 23: ttvig AgfGGl-AlAIrlqaA gipvl CRTI_MYXXA : 16- 30: vivvg AgpGGlsA-AInlagQ gfrvt CRTI_NEUCR : 15- 29: aiivg AgaGGi-AvAArlakA gvdvt CRTI_RHOCA : 16- 29: avvig AglGGl-A-AAmrlgA kgykv N 14: 26.2011 7( 7) A-[GL]-x-[GS]-G-x(1,2)-A-x(0,1)-A-x(2)-L Occurences: 7(7) CRTD_RHOCA : 474- 485: agvpm ALtSGthA-AraL ladri CRTD_RHOSH : 13- 24: vvvvg AGmGGl-AsAirL aragc CRTI_ERWHE : 9- 20: tvvig AGfGGl-AlAirL qaagi CRTI_ERWUR : 9- 20: ttvig AGfGGl-AlAirL qaagi CRTI_MYXXA : 16- 27: vivvg AGpGGlsA-AinL agqgf CRTI_NEUCR : 15- 26: aiivg AGaGGi-AvAarL akagv CRTI_RHOCA : 16- 27: avvig AGlGGlaA-AmrL gakgy CRTI_RHOCA : 16- 27: avvig AGlGGl-AaAmrL gakgy O 15: 23.0677 8( 7) A-G-x(0,1)-G-G-x(3,4)-A-x(2)-[LP] Occurences: 8(7) CRTD_RHOCA : 461- 472: kglyl AG-GGthpgAgvP malts CRTD_RHOSH : 13- 24: vvvvg AGmGGlas-AirL aragc CRTD_RHOSH : 462- 473: pglwl AG-GGahpgAgvP maals CRTI_ERWHE : 9- 20: tvvig AGfGGlal-AirL qaagi CRTI_ERWUR : 9- 20: ttvig AGfGGlal-AirL qaagi CRTI_MYXXA : 16- 27: vivvg AGpGGlsa-AinL agqgf CRTI_NEUCR : 15- 26: aiivg AGaGGiav-AarL akagv CRTI_RHOCA : 16- 27: avvig AGlGGlaa-AmrL gakgy P 16: 22.4436 8( 7) A-G-x(1,2)-G-x(3)-[AGS]-A-x(3,4)-A Occurences: 8(7) CRTD_RHOCA : 461- 474: kglyl AGg-GthpGAgvpmA ltsgt CRTD_RHOSH : 13- 25: vvvvg AGm-GglaSAirl-A ragce CRTD_RHOSH : 462- 475: pglwl AGg-GahpGAgvpmA alsgr CRTI_ERWHE : 471- 484: gthpg AGipGvvaSAkat-A slmie CRTI_ERWUR : 471- 484: gthpg AGipGvigSAkat-A glmle CRTI_MYXXA : 16- 28: vivvg AGp-GglsAAinl-A gqgfr CRTI_NEUCR : 15- 29: aiivg AGagGiavAArlakA gvdvt CRTI_RHOCA : 16- 29: avvig AGl-GglaAAmrlgA kgykv Q 17: 19.8503 8( 7) G-x(2)-A-x(0,1)-A-x(2)-L-x(0,1)-A Occurences: 8(7) CRTD_RHOCA : 478- 487: malts GthA-AraLlA drisa CRTD_RHOSH : 16- 25: vgagm GglAsAirL-A ragce CRTI_ERWHE : 12- 22: igagf GglAlAirLqA agipt CRTI_ERWUR : 12- 22: igagf GglAlAirLqA agipv CRTI_MYXXA : 20- 28: gagpg GlsA-AinL-A gqgfr CRTI_NEUCR : 18- 27: vgaga GgiAvAarL-A kagvd CRTI_RHOCA : 19- 29: igagl GglAaAmrLgA kgykv CRTI_RHOCA : 20- 29: gaglg GlaA-AmrLgA kgykv R 18: 19.3503 7( 7) V-x-A-G-x(2,3)-G-x(0,2)-A Occurences: 7(7) CRTD_RHOCA : 33- 43: lrvtv VeAGdapGgkA ravpt CRTD_RHOSH : 11- 19: pkvvv VgAGmg-Gl-A sairl CRTI_ERWHE : 463- 471: anlyl VgAGthpG--A gipgv CRTI_ERWUR : 463- 471: tnlyl VgAGthpG--A gipgv CRTI_MYXXA : 14- 23: rhviv VgAGpg-GlsA ainla CRTI_NEUCR : 13- 21: rsaii VgAGag-Gi-A vaarl CRTI_RHOCA : 475- 483: dglyl VgAGthpG--A gvpsv S 19: 19.3503 8( 7) G-x-G-x(1,3)-G-x(0,1)-G-x(3)-A Occurences: 8(7) CRTD_RHOCA : 462- 474: glyla GgGthpGaGvpmA ltsgt CRTD_RHOSH : 12- 21: kvvvv GaGm--G-GlasA irlar CRTD_RHOSH : 463- 475: glwla GgGahpGaGvpmA alsgr CRTI_ERWHE : 8- 17: ktvvi GaGf--G-GlalA irlqa CRTI_ERWUR : 8- 17: pttvi GaGf--G-GlalA irlqa CRTI_MYXXA : 15- 24: hvivv GaGp--G-GlsaA inlag CRTI_NEUCR : 14- 23: saiiv GaGa--G-GiavA arlak CRTI_RHOCA : 15- 24: ravvi GaGl--G-GlaaA mrlga T 20: 19.3503 11( 7) V-x(1,2)-G-A-x(0,2)-G-x(4)-A Occurences: 11(7) CRTD_RHOCA : 8- 20: setdv VviGArmGglaaA igaaa CRTD_RHOCA : 9- 20: etdvv Vi-GArmGglaaA igaaa CRTD_RHOSH : 9- 19: ivpkv VvvGA--GmgglA sairl CRTD_RHOSH : 9- 21: ivpkv VvvGAgmGglasA irlar CRTD_RHOSH : 10- 19: vpkvv Vv-GA--GmgglA sairl CRTD_RHOSH : 10- 21: vpkvv Vv-GAgmGglasA irlar CRTI_ERWHE : 5- 15: mkkt VviGA--GfgglA lairl CRTI_ERWHE : 5- 17: mkkt VviGAgfGglalA irlqa CRTI_ERWHE : 6- 15: mkktv Vi-GA--GfgglA lairl CRTI_ERWHE : 6- 17: mkktv Vi-GAgfGglalA irlqa CRTI_ERWUR : 6- 15: mkptt Vi-GA--GfgglA lairl CRTI_ERWUR : 6- 17: mkptt Vi-GAgfGglalA irlqa CRTI_MYXXA : 13- 24: vrhvi Vv-GAgpGglsaA inlag CRTI_NEUCR : 13- 23: rsaii VgaGA--GgiavA arlak CRTI_NEUCR : 13- 24: rsaii VgaGAg-GiavaA rlaka CRTI_RHOCA : 12- 22: gmgra VviGA--GlgglA aamrl CRTI_RHOCA : 12- 24: gmgra VviGAglGglaaA mrlga CRTI_RHOCA : 13- 22: mgrav Vi-GA--GlgglA aamrl CRTI_RHOCA : 13- 24: mgrav Vi-GAglGglaaA mrlga Number of patterns evaluated by Pratt:17147 Total running time: 12 seconds