------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file PHOSPHORYLASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PHOSPHORYLASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PHS1_DICDI 853 PHS1_HUMAN 847 PHS1_RABIT 842 PHS1_RAT 850 PHS2_DICDI 992 PHS2_HUMAN 843 PHS2_RAT 276 PHS3_HUMAN 863 PHSG_BACSU 798 PHSG_ECOLI 815 PHSG_HAEIN 821 PHSG_YEAST 901 PHSH_SOLTU 838 PHSL_IPOBA 955 PHSL_SOLTU 966 PHSM_ECOLI 797 PHSM_KLEPN 108 PHSM_STRPN 89 Pratt run started at Thu Feb 6 20:39:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 19( 18) L-x(0,1)-I-G-x(4,5)-N 2: 15.6802 21( 18) F-x(0,1)-L-x-G-x(1,2)-L 3: 12.5102 27( 18) L-x(4)-L-x-N 4: 12.5102 24( 18) G-x-L-x(4)-L 5: 12.0102 26( 18) L-x-N-x(0,1)-L 6: 12.0102 34( 18) L-x(3)-L-x(4,5)-L 7: 12.0102 39( 18) L-x(3,4)-L-x-N 8: 12.0102 22( 18) I-G-x(4,5)-N 9: 12.0102 52( 18) L-x(2,3)-L-x(4)-L 10: 12.0102 33( 18) L-x(4)-L-x(0,1)-N 11: 12.0102 38( 18) L-x(3,4)-L-x(4)-L 12: 12.0102 27( 18) S-x(2,3)-F-x(3)-R 13: 11.5102 22( 18) A-x(2,3)-A-x(2,3)-T 14: 11.5102 40( 18) V-x(2,3)-E-x(0,1)-L 15: 11.5102 39( 18) V-x(1,2)-E-x(0,1)-L 16: 11.5102 61( 18) L-x(0,1)-G-x(0,1)-L 17: 11.5102 39( 18) L-x(0,1)-I-x(1,2)-L 18: 11.5102 44( 18) N-x(4,5)-G-x(4,5)-V 19: 11.5102 48( 18) L-x(1,2)-N-x(1,2)-L 20: 11.5102 40( 18) L-x(1,2)-N-x(0,1)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 22.3864 28( 18) L-x(0,1)-G-x(0,1)-L-x(2)-[CGN]-x-[LMV]-x-[GNS]-x-[AGN] B 2: 18.0882 19( 18) L-x(0,1)-I-G-x(4,5)-N-x(2)-[FILM] C 3: 17.6140 21( 18) F-x(0,1)-L-x-G-x(1,2)-L-x(2)-[AGNQS] D 4: 17.4057 26( 18) L-x(1,2)-N-x(1,2)-L-x(2)-[IL]-[AGT] E 5: 16.8770 26( 18) S-x(2,3)-F-x(2)-[DGN]-R-x(3)-[ENQT] F 6: 15.1787 22( 18) L-x-[GIV]-x(2)-L-x-N G 7: 14.6787 22( 18) L-x-[GIV]-x(2)-L-x(0,1)-N H 8: 14.6631 38( 18) L-x(2,3)-L-x(4)-L-x-[GNS] I 9: 14.2494 19( 18) I-G-x(4,5)-N-[AILV] J 10: 13.3994 19( 18) A-x(2,3)-A-x(2,3)-T-[DEGST] K 11: 12.5102 24( 18) G-x-L-x(4)-L L 12: 12.0102 26( 18) L-x-N-x(0,1)-L M 13: 12.0102 34( 18) L-x(3)-L-x(4,5)-L N 14: 12.0102 39( 18) L-x(3,4)-L-x-N O 15: 12.0102 38( 18) L-x(3,4)-L-x(4)-L P 16: 11.5102 40( 18) V-x(2,3)-E-x(0,1)-L Q 17: 11.5102 39( 18) V-x(1,2)-E-x(0,1)-L R 18: 11.5102 61( 18) L-x(0,1)-G-x(0,1)-L S 19: 11.5102 39( 18) L-x(0,1)-I-x(1,2)-L T 20: 11.5102 44( 18) N-x(4,5)-G-x(4,5)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 22.3864 28( 18) L-x(0,1)-G-x(0,1)-L-x(2)-[CGN]-x-[LMV]-x-[GNS]-x-[AGN] Occurences: 28(18) PHS1_DICDI : 153- 165: lgngg L-GrLaaCfMdSlA tlkyp PHS1_HUMAN : 137- 149: lgngg L-GrLaaCfLdSmA tlgla PHS1_HUMAN : 684- 697: nmkfm LnGaLtiGtMdGaN vemae PHS1_RABIT : 136- 148: lgngg L-GrLaaCfLdSmA tlgla PHS1_RABIT : 683- 696: nmkfm LnGaLtiGtMdGaN vemae PHS1_RAT : 137- 149: lgngg L-GrLaaCfLdSmA tlgla PHS1_RAT : 684- 697: nmkfm LnGaLtiGtMdGaN vemae PHS2_DICDI : 223- 235: lgngg L-GrLaaCfMdSlA tcnfp PHS2_HUMAN : 137- 149: lgngg L-GrLaaCfLdSmA tlgla PHS2_HUMAN : 685- 698: nmkfm LnGaLtiGtMdGaN vemae PHS2_RAT : 118- 131: nmkfm LnGaLtiGtMdGaN vemae PHS3_HUMAN : 137- 149: lgngg L-GrLaaCfLdSmA tlgla PHS3_HUMAN : 684- 697: nmkfm LnGaLtiGtMdGaN vemae PHSG_BACSU : 117- 129: lgngg L-GrLaaCfLdSlA slnlp PHSG_ECOLI : 126- 138: lgngg L-GrLaaCfLdSlA tlglp PHSG_ECOLI : 665- 678: nmkfa LnGaLtiGtLdGaN vemld PHSG_HAEIN : 131- 143: lgngg L-GrLaaCfMdSiA tlglp PHSG_HAEIN : 670- 683: nmkfa LnGaLtlGtLdGaN veile PHSG_YEAST : 188- 200: lgngg L-GrLaaCfVdSmA tegip PHSH_SOLTU : 136- 148: lgngg L-GrLasCfLdSmA tlnlp PHSH_SOLTU : 687- 700: nmkfa LnGcLiiGtLdGaN veire PHSL_IPOBA : 181- 193: lgngg L-GrLasCfLdSlA tlnyp PHSL_SOLTU : 188- 200: lgngg L-GrLasCfLdSlA tlnyp PHSM_ECOLI : 70- 83: ismef LiGrLtgNnLlNlG wyqdv PHSM_ECOLI : 116- 128: lgngg L-GrLaaCfLdSmA tvgqs PHSM_ECOLI : 649- 662: nmkla LnGaLtvGtLdGaN veiae PHSM_KLEPN : 70- 83: ismef LiGrLtgNnLlNlG wyqqv PHSM_STRPN : 56- 69: isaef LiGkLlsNnLiNlG lyddv B 2: 18.0882 19( 18) L-x(0,1)-I-G-x(4,5)-N-x(2)-[FILM] Occurences: 19(18) PHS1_DICDI : 704- 716: tmngs LiIGtldgaNveI aeevg PHS1_HUMAN : 688- 700: mlnga LtIGtmdgaNveM aeeag PHS1_RABIT : 687- 699: mlnga LtIGtmdgaNveM aeeag PHS1_RAT : 688- 700: mlnga LtIGtmdgaNveM aeeag PHS2_DICDI : 769- 781: smngg LiIGtldgaNieI rdaig PHS2_HUMAN : 689- 701: mlnga LtIGtmdgaNveM aeeag PHS2_RAT : 122- 134: mlnga LtIGtmdgaNveM aeeag PHS3_HUMAN : 688- 700: mlnga LtIGtmdgaNveM aeeag PHSG_BACSU : 653- 665: mmnga LtIGthdgaNieI lervg PHSG_ECOLI : 80- 90: lsmef L-IGrtls-NamL slgiy PHSG_ECOLI : 669- 681: alnga LtIGtldgaNveM ldhvg PHSG_HAEIN : 85- 95: lsmef L-IGrtls-NamI aegiy PHSG_YEAST : 757- 769: vmngg LiIGtvdgaNveI treig PHSH_SOLTU : 691- 703: alngc LiIGtldgaNveI reeig PHSL_IPOBA : 809- 820: mngci L-IGtldgaNveI rqevg PHSL_SOLTU : 888- 898: ynydd L-IGsleg-NegF grady PHSM_ECOLI : 70- 80: ismef L-IGrltg-NnlL nlgwy PHSM_KLEPN : 70- 80: ismef L-IGrltg-NnlL nlgwy PHSM_STRPN : 56- 66: isaef L-IGklls-NnlI nlgly C 3: 17.6140 21( 18) F-x(0,1)-L-x-G-x(1,2)-L-x(2)-[AGNQS] Occurences: 21(18) PHS1_DICDI : 106- 115: ylsme F-LmGrsLqnA iynmn PHS1_HUMAN : 682- 691: tgnmk FmLnGa-LtiG tmdga PHS1_RABIT : 681- 690: tgnmk FmLnGa-LtiG tmdga PHS1_RAT : 682- 691: tgnmk FmLnGa-LtiG tmdga PHS2_DICDI : 176- 185: ymsle F-LlGrsLqnS lsalg PHS2_HUMAN : 683- 692: tgnmk FmLnGa-LtiG tmdga PHS2_RAT : 116- 125: tgnmk FmLnGa-LtiG tmdga PHS3_HUMAN : 682- 691: tgnmk FmLnGa-LtiG tmdga PHSG_BACSU : 70- 78: ylsie F-LlGq-LleQ nlmnl PHSG_BACSU : 70- 79: ylsie F-LlGqlLeqN lmnlg PHSG_ECOLI : 79- 88: ylsme F-LiGrtLsnA mlslg PHSG_ECOLI : 663- 672: tsnmk FaLnGa-LtiG tldga PHSG_HAEIN : 84- 93: ylsme F-LiGrtLsnA miaeg PHSG_HAEIN : 668- 677: tsnmk FaLnGa-LtlG tldga PHSG_YEAST : 128- 137: ylsle F-LmGraLdnA linmk PHSG_YEAST : 779- 787: gednv F-LfGn-LseN veelr PHSH_SOLTU : 685- 694: tsnmk FaLnGc-LiiG tldga PHSL_IPOBA : 134- 143: ylsme F-LqGraLlnA ignle PHSL_SOLTU : 141- 150: ylsme F-LqGraLlnA ignle PHSM_ECOLI : 69- 77: yisme F-LiGr-LtgN nllnl PHSM_KLEPN : 69- 77: yisme F-LiGr-LtgN nllnl PHSM_STRPN : 55- 63: yisae F-LiGk-LlsN nlinl PHSM_STRPN : 55- 64: yisae F-LiGklLsnN linlg D 4: 17.4057 26( 18) L-x(1,2)-N-x(1,2)-L-x(2)-[IL]-[AGT] Occurences: 26(18) PHS1_DICDI : 148- 157: ekdaa Lg-NggLgrLA acfmd PHS1_HUMAN : 132- 141: eedag Lg-NggLgrLA acfld PHS1_HUMAN : 578- 586: eykrq Ll-Nc-LhvIT mynri PHS1_RABIT : 131- 140: eedag Lg-NggLgrLA acfld PHS1_RABIT : 577- 585: eykrq Ll-Nc-LhvIT lynri PHS1_RAT : 132- 141: eedag Lg-NggLgrLA acfld PHS1_RAT : 578- 586: eykrq Ll-Nc-LhvIT mynri PHS2_DICDI : 182- 190: llgrs Lq-Ns-LsaLG lvgky PHS2_DICDI : 218- 227: erdag Lg-NggLgrLA acfmd PHS2_HUMAN : 132- 141: eedag Lg-NggLgrLA acfld PHS2_HUMAN : 579- 587: eykrq Ll-Nc-LhvIT lynri PHS2_RAT : 13- 21: eykrq Ll-Nc-LhiIT lynri PHS3_HUMAN : 132- 141: eedag Lg-NggLgrLA acfld PHSG_BACSU : 112- 121: endag Lg-NggLgrLA acfld PHSG_ECOLI : 121- 130: endpg Lg-NggLgrLA acfld PHSG_ECOLI : 559- 567: eykrq Lm-Nv-LhvIT rynri PHSG_HAEIN : 126- 135: evdpg Lg-NggLgrLA acfmd PHSG_YEAST : 183- 192: epdag Lg-NggLgrLA acfvd PHSH_SOLTU : 131- 140: ekdaa Lg-NggLgrLA scfld PHSL_IPOBA : 176- 185: epdaa Lg-NggLgrLA scfld PHSL_SOLTU : 183- 192: epdaa Lg-NggLgrLA scfld PHSM_ECOLI : 74- 83: fligr LtgNn-LlnLG wyqdv PHSM_ECOLI : 111- 120: eidpa Lg-NggLgrLA acfld PHSM_KLEPN : 74- 83: fligr LtgNn-LlnLG wyqqv PHSM_STRPN : 60- 69: fligk LlsNn-LinLG lyddv PHSM_STRPN : 61- 69: ligkl Ls-Nn-LinLG lyddv E 5: 16.8770 26( 18) S-x(2,3)-F-x(2)-[DGN]-R-x(3)-[ENQT] Occurences: 26(18) PHS1_DICDI : 103- 114: rvyyl Sme-FlmGRslqN aiynm PHS1_DICDI : 820- 832: iinsa StyfFssDRamnE yaeqi PHS1_HUMAN : 87- 98: reyyl Sle-FymGRtlqN tminl PHS1_HUMAN : 809- 820: kniaa Sgk-FssDRtikE yaqni PHS1_RABIT : 86- 97: riyyl Sle-FymGRtlqN tmvnl PHS1_RABIT : 808- 819: rniat Sgk-FssDRtiaQ yarei PHS1_RAT : 87- 98: rvyyl Sle-FymGRtlqN tminl PHS1_RAT : 809- 820: rniaa Sgk-FssDRtirE yakdi PHS2_DICDI : 173- 184: qvnym Sle-FllGRslqN slsal PHS2_HUMAN : 87- 98: riyyl Sle-FymGRtlqN tmvnl PHS2_HUMAN : 810- 821: rniat Sgk-FssDRtiaQ yarei PHS2_RAT : 243- 254: rniat Sgk-FssDRtiaQ yarei PHS3_HUMAN : 87- 98: riyyl Sle-FymGRtlqN tmvnl PHS3_HUMAN : 809- 820: rniac Sgk-FssDRtitE yarei PHSG_BACSU : 775- 786: vniah Sgy-FssDRtirE yakdi PHSG_ECOLI : 76- 87: qvyyl Sme-FliGRtlsN amlsl PHSG_HAEIN : 81- 92: rvyyl Sme-FliGRtlsN amiae PHSG_YEAST : 125- 136: rvyyl Sle-FlmGRaldN alinm PHSH_SOLTU : 813- 824: lstsg Sgk-FssDRtisQ yakei PHSL_IPOBA : 131- 142: qayyl Sme-FlqGRallN aignl PHSL_IPOBA : 930- 941: lntag Syk-FssDRtihE yakdi PHSL_SOLTU : 138- 149: qayyl Sme-FlqGRallN aignl PHSL_SOLTU : 941- 952: lntag Syk-FssDRtihE yakdi PHSM_ECOLI : 66- 77: hvnyi Sme-FliGRltgN nllnl PHSM_KLEPN : 66- 77: hvnyi Sme-FliGRltgN nllnl PHSM_STRPN : 3- 15: ml SlqeFvqNRynkT iaecs F 6: 15.1787 22( 18) L-x-[GIV]-x(2)-L-x-N Occurences: 22(18) PHS1_DICDI : 107- 114: lsmef LmGrsLqN aiynm PHS1_HUMAN : 641- 648: mvgsk LkVifLeN yrvsl PHS1_RABIT : 581- 588: qllnc LhVitLyN rikke PHS1_RABIT : 640- 647: vvgdr LrVifLeN yrvsl PHS1_RAT : 641- 648: mvgsk LkVifLeN yrvsl PHS2_DICDI : 177- 184: mslef LlGrsLqN slsal PHS2_HUMAN : 583- 590: qllnc LhVitLyN rikre PHS2_HUMAN : 642- 649: avgdr LrVifLeN yrvsl PHS2_RAT : 17- 24: qllnc LhIitLyN rikre PHS2_RAT : 75- 82: pavgd LrVifLeN yrvsl PHS3_HUMAN : 582- 589: qllnc LhVvtLyN rikrd PHS3_HUMAN : 641- 648: vvgdr LkVifLeN yrvsl PHSG_BACSU : 547- 554: qllnv LhImyLyN rlked PHSG_ECOLI : 80- 87: lsmef LiGrtLsN amlsl PHSG_HAEIN : 85- 92: lsmef LiGrtLsN amiae PHSG_YEAST : 129- 136: lslef LmGraLdN alinm PHSH_SOLTU : 90- 97: lsmey LqGraLtN avgnl PHSL_IPOBA : 135- 142: lsmef LqGraLlN aignl PHSL_SOLTU : 142- 149: lsmef LqGraLlN aignl PHSM_ECOLI : 74- 81: fligr LtGnnLlN lgwyq PHSM_KLEPN : 74- 81: fligr LtGnnLlN lgwyq PHSM_STRPN : 56- 63: isaef LiGklLsN nlinl G 7: 14.6787 22( 18) L-x-[GIV]-x(2)-L-x(0,1)-N Occurences: 22(18) PHS1_DICDI : 107- 114: lsmef LmGrsLqN aiynm PHS1_HUMAN : 641- 648: mvgsk LkVifLeN yrvsl PHS1_RABIT : 581- 588: qllnc LhVitLyN rikke PHS1_RABIT : 640- 647: vvgdr LrVifLeN yrvsl PHS1_RAT : 641- 648: mvgsk LkVifLeN yrvsl PHS2_DICDI : 177- 184: mslef LlGrsLqN slsal PHS2_HUMAN : 583- 590: qllnc LhVitLyN rikre PHS2_HUMAN : 642- 649: avgdr LrVifLeN yrvsl PHS2_RAT : 17- 24: qllnc LhIitLyN rikre PHS2_RAT : 75- 82: pavgd LrVifLeN yrvsl PHS3_HUMAN : 582- 589: qllnc LhVvtLyN rikrd PHS3_HUMAN : 641- 648: vvgdr LkVifLeN yrvsl PHSG_BACSU : 547- 554: qllnv LhImyLyN rlked PHSG_ECOLI : 80- 87: lsmef LiGrtLsN amlsl PHSG_HAEIN : 85- 92: lsmef LiGrtLsN amiae PHSG_YEAST : 129- 136: lslef LmGraLdN alinm PHSH_SOLTU : 90- 97: lsmey LqGraLtN avgnl PHSL_IPOBA : 135- 142: lsmef LqGraLlN aignl PHSL_SOLTU : 142- 149: lsmef LqGraLlN aignl PHSM_ECOLI : 74- 81: fligr LtGnnLlN lgwyq PHSM_KLEPN : 74- 81: fligr LtGnnLlN lgwyq PHSM_STRPN : 56- 63: isaef LiGklLsN nlinl H 8: 14.6631 38( 18) L-x(2,3)-L-x(4)-L-x-[GNS] Occurences: 38(18) PHS1_DICDI : 29- 39: kkgsk Lfa-LktdfLkN dedsi PHS1_HUMAN : 137- 147: lgngg Lgr-LaacfLdS matlg PHS1_RABIT : 136- 146: lgngg Lgr-LaacfLdS matlg PHS1_RABIT : 577- 588: eykrq LlncLhvitLyN rikke PHS1_RABIT : 578- 588: ykrql Lnc-LhvitLyN rikke PHS1_RAT : 137- 147: lgngg Lgr-LaacfLdS matlg PHS2_DICDI : 174- 184: vnyms Lef-LlgrsLqN slsal PHS2_DICDI : 182- 193: llgrs LqnsLsalgLvG kysda PHS2_DICDI : 582- 592: qsnpq Lae-LitrsLnS drwlv PHS2_HUMAN : 137- 147: lgngg Lgr-LaacfLdS matlg PHS2_HUMAN : 579- 590: eykrq LlncLhvitLyN rikre PHS2_HUMAN : 580- 590: ykrql Lnc-LhvitLyN rikre PHS2_RAT : 13- 24: eykrq LlncLhiitLyN rikre PHS2_RAT : 14- 24: ykrql Lnc-LhiitLyN rikre PHS3_HUMAN : 137- 147: lgngg Lgr-LaacfLdS matlg PHS3_HUMAN : 578- 589: eykrq LlncLhvvtLyN rikrd PHS3_HUMAN : 579- 589: ykrql Lnc-LhvvtLyN rikrd PHSG_BACSU : 71- 82: lsief LlgqLleqnLmN lgvrd PHSG_BACSU : 72- 82: siefl Lgq-LleqnLmN lgvrd PHSG_BACSU : 117- 127: lgngg Lgr-LaacfLdS lasln PHSG_BACSU : 125- 135: laacf Lds-LaslnLpG hgmgi PHSG_BACSU : 543- 554: aykrq LlnvLhimyLyN rlked PHSG_BACSU : 544- 554: ykrql Lnv-LhimyLyN rlked PHSG_ECOLI : 126- 136: lgngg Lgr-LaacfLdS latlg PHSG_ECOLI : 134- 144: laacf Lds-LatlgLpG rgygi PHSG_ECOLI : 665- 676: nmkfa LngaLtigtLdG anvem PHSG_HAEIN : 670- 681: nmkfa LngaLtlgtLdG anvei PHSG_YEAST : 126- 136: vyyls Lef-LmgraLdN alinm PHSH_SOLTU : 136- 146: lgngg Lgr-LascfLdS matln PHSH_SOLTU : 687- 698: nmkfa LngcLiigtLdG anvei PHSL_IPOBA : 181- 191: lgngg Lgr-LascfLdS latln PHSL_SOLTU : 188- 198: lgngg Lgr-LascfLdS latln PHSM_ECOLI : 70- 81: ismef LigrLtgnnLlN lgwyq PHSM_ECOLI : 116- 126: lgngg Lgr-LaacfLdS matvg PHSM_ECOLI : 649- 660: nmkla LngaLtvgtLdG anvei PHSM_KLEPN : 70- 81: ismef LigrLtgnnLlN lgwyq PHSM_STRPN : 26- 36: neely Lal-LnyskLaS sqkpv PHSM_STRPN : 56- 67: isaef LigkLlsnnLiN lglyd I 9: 14.2494 19( 18) I-G-x(4,5)-N-[AILV] Occurences: 19(18) PHS1_DICDI : 706- 714: ngsli IGtldgaNV eiaee PHS1_HUMAN : 690- 698: ngalt IGtmdgaNV emaee PHS1_RABIT : 689- 697: ngalt IGtmdgaNV emaee PHS1_RAT : 690- 698: ngalt IGtmdgaNV emaee PHS2_DICDI : 771- 779: nggli IGtldgaNI eirda PHS2_HUMAN : 691- 699: ngalt IGtmdgaNV emaee PHS2_RAT : 124- 132: ngalt IGtmdgaNV emaee PHS3_HUMAN : 690- 698: ngalt IGtmdgaNV emaee PHSG_BACSU : 655- 663: ngalt IGthdgaNI eiler PHSG_ECOLI : 81- 88: smefl IGrtls-NA mlslg PHSG_ECOLI : 671- 679: ngalt IGtldgaNV emldh PHSG_HAEIN : 86- 93: smefl IGrtls-NA miaeg PHSG_YEAST : 759- 767: nggli IGtvdgaNV eitre PHSH_SOLTU : 693- 701: ngcli IGtldgaNV eiree PHSL_IPOBA : 810- 818: ngcil IGtldgaNV eirqe PHSL_SOLTU : 821- 829: ngciq IGtldgaNV eiree PHSM_ECOLI : 71- 79: smefl IGrltgnNL lnlgw PHSM_KLEPN : 71- 79: smefl IGrltgnNL lnlgw PHSM_STRPN : 57- 65: saefl IGkllsnNL inlgl J 10: 13.3994 19( 18) A-x(2,3)-A-x(2,3)-T-[DEGST] Occurences: 19(18) PHS1_DICDI : 686- 694: qqist AgteAsg-TS nmkft PHS1_HUMAN : 670- 678: eqist AgteAsg-TG nmkfm PHS1_RABIT : 669- 677: eqist AgteAsg-TG nmkfm PHS1_RAT : 670- 678: eqist AgteAsg-TG nmkfm PHS2_DICDI : 751- 759: qhist AgteAsg-TS nmkfs PHS2_HUMAN : 671- 679: eqist AgteAsg-TG nmkfm PHS2_RAT : 104- 112: eqist AgteAsg-TG nmkfm PHS3_HUMAN : 670- 678: qqist AgteAsg-TG nmkfm PHSG_BACSU : 635- 643: eqist AskeAsg-TG nmkfm PHSG_ECOLI : 651- 659: eqisl AgteAsg-TS nmkfa PHSG_HAEIN : 656- 664: eqisl AgteAsg-TS nmkfa PHSG_YEAST : 739- 747: ehist AgteAsg-TS nmkfv PHSH_SOLTU : 673- 681: qhist AgmeAsg-TS nmkfa PHSL_IPOBA : 737- 746: atyvq AkriAkfiTD vgati PHSL_SOLTU : 73- 81: dlssf ApdaAsi-TS sikyh PHSL_SOLTU : 73- 81: dlssf Apd-AasiTS sikyh PHSL_SOLTU : 801- 809: ehist AgmeAsg-TS nmkfa PHSM_ECOLI : 635- 643: eqist AgkeAsg-TG nmkla PHSM_KLEPN : 49- 57: sells AqpvAka-TE gerhv PHSM_STRPN : 79- 86: vkkel Aaa-Atp-TT kgt K 11: 12.5102 24( 18) G-x-L-x(4)-L Occurences: 24(18) PHS1_DICDI : 702- 709: kftmn GsLiigtL dganv PHS1_HUMAN : 138- 145: gnggl GrLaacfL dsmat PHS1_RABIT : 137- 144: gnggl GrLaacfL dsmat PHS1_RAT : 138- 145: gnggl GrLaacfL dsmat PHS2_DICDI : 767- 774: kfsmn GgLiigtL dgani PHS2_HUMAN : 138- 145: gnggl GrLaacfL dsmat PHS2_RAT : 73- 80: hdpav GdLrvifL enyrv PHS3_HUMAN : 138- 145: gnggl GrLaacfL dsmat PHSG_BACSU : 73- 80: iefll GqLleqnL mnlgv PHSG_BACSU : 118- 125: gnggl GrLaacfL dslas PHSG_ECOLI : 100- 107: yedvq GaLeamgL nleel PHSG_ECOLI : 127- 134: gnggl GrLaacfL dslat PHSG_ECOLI : 667- 674: kfaln GaLtigtL dganv PHSG_HAEIN : 672- 679: kfaln GaLtlgtL dganv PHSG_YEAST : 443- 450: prrlf GhLlprhL eiiyd PHSH_SOLTU : 137- 144: gnggl GrLascfL dsmat PHSH_SOLTU : 689- 696: kfaln GcLiigtL dganv PHSL_IPOBA : 182- 189: gnggl GrLascfL dslat PHSL_SOLTU : 189- 196: gnggl GrLascfL dslat PHSM_ECOLI : 72- 79: mefli GrLtgnnL lnlgw PHSM_ECOLI : 117- 124: gnggl GrLaacfL dsmat PHSM_ECOLI : 651- 658: klaln GaLtvgtL dganv PHSM_KLEPN : 72- 79: mefli GrLtgnnL lnlgw PHSM_STRPN : 58- 65: aefli GkLlsnnL inlgl L 12: 12.0102 26( 18) L-x-N-x(0,1)-L Occurences: 26(18) PHS1_DICDI : 591- 595: eykrq LlNiL sviyr PHS1_HUMAN : 578- 582: eykrq LlNcL hvitm PHS1_RABIT : 577- 581: eykrq LlNcL hvitl PHS1_RAT : 578- 582: eykrq LlNcL hvitm PHS2_DICDI : 182- 186: llgrs LqNsL salgl PHS2_DICDI : 596- 599: nsdrw LvN-L diikd PHS2_DICDI : 661- 665: eykrq LlNvL svinr PHS2_HUMAN : 579- 583: eykrq LlNcL hvitl PHS2_RAT : 13- 17: eykrq LlNcL hiitl PHS3_HUMAN : 578- 582: eykrq LlNcL hvvtl PHSG_BACSU : 80- 83: lleqn LmN-L gvrdv PHSG_BACSU : 543- 547: aykrq LlNvL himyl PHSG_BACSU : 552- 556: lhimy LyNrL kedsg PHSG_ECOLI : 499- 503: rtdls LlNeL qqhcd PHSG_ECOLI : 559- 563: eykrq LmNvL hvitr PHSG_HAEIN : 313- 316: rthns LeN-L adkva PHSG_YEAST : 134- 138: lmgra LdNaL inmki PHSH_SOLTU : 519- 522: tnlel LaN-L refad PHSH_SOLTU : 578- 582: eykrq LlNiL gviyr PHSL_IPOBA : 694- 698: eykrq LlNiL givyr PHSL_SOLTU : 164- 167: afaea LkN-L ghnle PHSM_ECOLI : 79- 82: ltgnn LlN-L gwyqd PHSM_ECOLI : 484- 487: ndldq LiN-L vklad PHSM_KLEPN : 79- 82: ltgnn LlN-L gwyqq PHSM_STRPN : 61- 65: ligkl LsNnL inlgl PHSM_STRPN : 65- 68: llsnn LiN-L glydd M 13: 12.0102 34( 18) L-x(3)-L-x(4,5)-L Occurences: 34(18) PHS1_DICDI : 362- 372: igvve LfrkLideegL qweea PHS1_HUMAN : 392- 401: rwpvd LvekLlprh-L eiiye PHS1_HUMAN : 522- 532: sqltk LhsfLgddvfL relak PHS1_RABIT : 349- 359: laipe LmrvLvdlerL dwdka PHS1_RABIT : 391- 400: rwpvh LletLlprh-L qiiye PHS1_RABIT : 577- 586: eykrq LlncLhvit-L ynrik PHS1_RAT : 392- 401: rwpvd LvekLlprh-L qiiye PHS2_DICDI : 182- 191: llgrs LqnsLsalg-L vgkys PHS2_HUMAN : 393- 402: rwpvh LletLlprh-L qiiye PHS2_HUMAN : 579- 588: eykrq LlncLhvit-L ynrik PHS2_RAT : 13- 22: eykrq LlncLhiit-L ynrik PHS3_HUMAN : 578- 587: eykrq LlncLhvvt-L ynrik PHSG_BACSU : 71- 80: lsief LlgqLleqn-L mnlgv PHSG_BACSU : 543- 552: aykrq LlnvLhimy-L ynrlk PHSG_ECOLI : 440- 449: ngvse LhsnLmvqs-L fadfa PHSG_ECOLI : 665- 674: nmkfa LngaLtigt-L dganv PHSG_HAEIN : 47- 57: sqrdw LnatLhavrdL vtegw PHSG_HAEIN : 540- 549: yvkse LgveLdpha-L fdvqv PHSG_HAEIN : 670- 679: nmkfa LngaLtlgt-L dganv PHSG_YEAST : 399- 409: laive LqrvLvdlekL dwhea PHSG_YEAST : 441- 450: kwprr LfghLlprh-L eiiyd PHSH_SOLTU : 348- 358: ltipe LmrlLmddegL gwdes PHSH_SOLTU : 687- 696: nmkfa LngcLiigt-L dganv PHSL_IPOBA : 391- 401: lcipe LiriLidlkgL swkea PHSL_IPOBA : 468- 478: sdldm LekkLndmriL enfdi PHSL_SOLTU : 398- 408: lcipe LmriLidlkgL nwnea PHSL_SOLTU : 475- 485: mdlnk LeekLttmriL enfdl PHSM_ECOLI : 70- 79: ismef LigrLtgnn-L lnlgw PHSM_ECOLI : 70- 80: ismef LigrLtgnnlL nlgwy PHSM_ECOLI : 424- 433: ngvaa LhsdLvvkd-L fpeyh PHSM_ECOLI : 649- 658: nmkla LngaLtvgt-L dganv PHSM_KLEPN : 70- 79: ismef LigrLtgnn-L lnlgw PHSM_KLEPN : 70- 80: ismef LigrLtgnnlL nlgwy PHSM_STRPN : 24- 34: csnee LylaLlnyskL assqk PHSM_STRPN : 56- 65: isaef LigkLlsnn-L inlgl PHSM_STRPN : 61- 70: ligkl LsnnLinlg-L yddvk N 14: 12.0102 39( 18) L-x(3,4)-L-x-N Occurences: 39(18) PHS1_DICDI : 32- 39: sklfa LktdfLkN dedsi PHS1_DICDI : 107- 114: lsmef LmgrsLqN aiynm PHS1_HUMAN : 641- 648: mvgsk LkvifLeN yrvsl PHS1_HUMAN : 833- 839: vepsd Lkis-LsN esnkv PHS1_RABIT : 581- 588: qllnc LhvitLyN rikke PHS1_RABIT : 640- 647: vvgdr LrvifLeN yrvsl PHS1_RAT : 641- 648: mvgsk LkvifLeN yrvsl PHS2_DICDI : 177- 184: mslef LlgrsLqN slsal PHS2_DICDI : 178- 184: slefl Lgrs-LqN slsal PHS2_DICDI : 700- 706: yymak Liik-LiN svadv PHS2_HUMAN : 583- 590: qllnc LhvitLyN rikre PHS2_HUMAN : 642- 649: avgdr LrvifLeN yrvsl PHS2_RAT : 17- 24: qllnc LhiitLyN rikre PHS2_RAT : 75- 82: pavgd LrvifLeN yrvsl PHS3_HUMAN : 582- 589: qllnc LhvvtLyN rikrd PHS3_HUMAN : 641- 648: vvgdr LkvifLeN yrvsl PHSG_BACSU : 75- 82: fllgq LleqnLmN lgvrd PHSG_BACSU : 76- 82: llgql Leqn-LmN lgvrd PHSG_BACSU : 159- 166: ghqve LpeqwLkN gnvwe PHSG_BACSU : 547- 554: qllnv LhimyLyN rlked PHSG_ECOLI : 80- 87: lsmef LigrtLsN amlsl PHSG_ECOLI : 743- 749: gryrd Lvds-LiN fgdhy PHSG_HAEIN : 85- 92: lsmef LigrtLsN amiae PHSG_YEAST : 46- 53: dtmip LksraLwN khqvk PHSG_YEAST : 78- 84: hvett Lars-LyN cddma PHSG_YEAST : 129- 136: lslef LmgraLdN alinm PHSG_YEAST : 134- 140: lmgra Ldna-LiN mkied PHSG_YEAST : 688- 694: yymak Liik-LiN cvadi PHSH_SOLTU : 90- 97: lsmey LqgraLtN avgnl PHSL_IPOBA : 135- 142: lsmef LqgraLlN aignl PHSL_IPOBA : 160- 166: ealnk Lghn-LeN vaske PHSL_SOLTU : 142- 149: lsmef LqgraLlN aignl PHSL_SOLTU : 167- 173: ealkn Lghn-LeN vasqe PHSM_ECOLI : 74- 81: fligr LtgnnLlN lgwyq PHSM_KLEPN : 74- 81: fligr LtgnnLlN lgwyq PHSM_STRPN : 24- 30: csnee Lyla-LlN yskla PHSM_STRPN : 56- 63: isaef LigklLsN nlinl PHSM_STRPN : 60- 67: fligk LlsnnLiN lglyd PHSM_STRPN : 61- 67: ligkl Lsnn-LiN lglyd O 15: 12.0102 38( 18) L-x(3,4)-L-x(4)-L Occurences: 38(18) PHS1_DICDI : 102- 112: krvyy LsmefLmgrsL qnaiy PHS1_HUMAN : 392- 401: rwpvd Lvek-LlprhL eiiye PHS1_RABIT : 391- 400: rwpvh Llet-LlprhL qiiye PHS1_RABIT : 577- 586: eykrq Llnc-LhvitL ynrik PHS1_RAT : 392- 401: rwpvd Lvek-LlprhL qiiye PHS2_DICDI : 182- 191: llgrs Lqns-LsalgL vgkys PHS2_HUMAN : 393- 402: rwpvh Llet-LlprhL qiiye PHS2_HUMAN : 579- 588: eykrq Llnc-LhvitL ynrik PHS2_RAT : 13- 22: eykrq Llnc-LhiitL ynrik PHS3_HUMAN : 578- 587: eykrq Llnc-LhvvtL ynrik PHSG_BACSU : 66- 76: kqtyy LsiefLlgqlL eqnlm PHSG_BACSU : 71- 80: lsief Llgq-LleqnL mnlgv PHSG_BACSU : 313- 323: dthpa LavpeLmrilL deenm PHSG_BACSU : 543- 552: aykrq Llnv-LhimyL ynrlk PHSG_ECOLI : 75- 85: rqvyy LsmefLigrtL snaml PHSG_ECOLI : 80- 90: lsmef LigrtLsnamL slgiy PHSG_ECOLI : 102- 112: dvqga LeamgLnleeL ideen PHSG_ECOLI : 440- 449: ngvse Lhsn-LmvqsL fadfa PHSG_ECOLI : 665- 674: nmkfa Lnga-LtigtL dganv PHSG_HAEIN : 80- 90: rrvyy LsmefLigrtL snami PHSG_HAEIN : 540- 549: yvkse Lgve-LdphaL fdvqv PHSG_HAEIN : 670- 679: nmkfa Lnga-LtlgtL dganv PHSG_YEAST : 124- 134: krvyy LslefLmgraL dnali PHSG_YEAST : 441- 450: kwprr Lfgh-LlprhL eiiyd PHSH_SOLTU : 85- 95: kqtyy LsmeyLqgraL tnavg PHSH_SOLTU : 687- 696: nmkfa Lngc-LiigtL dganv PHSL_IPOBA : 130- 140: kqayy LsmefLqgraL lnaig PHSL_SOLTU : 137- 147: kqayy LsmefLqgraL lnaig PHSM_ECOLI : 70- 79: ismef Ligr-LtgnnL lnlgw PHSM_ECOLI : 285- 295: svadi LrrhhLagreL helad PHSM_ECOLI : 424- 433: ngvaa Lhsd-LvvkdL fpeyh PHSM_ECOLI : 601- 611: inndp LvgdkLkvvfL pdycv PHSM_ECOLI : 649- 658: nmkla Lnga-LtvgtL dganv PHSM_KLEPN : 70- 79: ismef Ligr-LtgnnL lnlgw PHSM_STRPN : 24- 34: csnee LylalLnyskL assqk PHSM_STRPN : 56- 65: isaef Ligk-LlsnnL inlgl PHSM_STRPN : 60- 70: fligk LlsnnLinlgL yddvk PHSM_STRPN : 61- 70: ligkl Lsnn-LinlgL yddvk P 16: 11.5102 40( 18) V-x(2,3)-E-x(0,1)-L Occurences: 40(18) PHS1_DICDI : 402- 408: lemwp VsliEdL lprhm PHS1_HUMAN : 355- 360: lmrif Vdi-EkL pwska PHS1_HUMAN : 380- 385: ytnht Vlp-EaL erwpv PHS1_HUMAN : 390- 396: lerwp VdlvEkL lprhl PHS1_HUMAN : 530- 535: flgdd VflrE-L akvkq PHS1_RABIT : 354- 359: lmrvl Vdl-ErL dwdka PHS1_RABIT : 379- 384: ytnht Vlp-EaL erwpv PHS1_RABIT : 389- 395: lerwp VhllEtL lprhl PHS1_RAT : 355- 360: lmrif Vdi-EkL pwska PHS1_RAT : 380- 385: ytnht Vlp-EaL erwpv PHS1_RAT : 390- 396: lerwp VdlvEkL lprhl PHS2_DICDI : 462- 467: ytnht Vlp-EaL ekwsv PHS2_HUMAN : 381- 386: ytnht Vlp-EaL erwpv PHS2_HUMAN : 391- 397: lerwp VhllEtL lprhl PHS2_RAT : 150- 156: ifgmr VedvErL dnrgy PHS3_HUMAN : 380- 385: ytnht Vlp-EaL erwpv PHS3_HUMAN : 390- 396: lerwp VsmfEkL lprhl PHS3_HUMAN : 716- 722: ifglr VedvEaL drkgy PHSG_BACSU : 478- 484: igdew VkqpEsL irlep PHSG_ECOLI : 484- 489: pslsa Vld-EhL grnwr PHSG_HAEIN : 112- 118: lseln VdleEvL ekevd PHSG_HAEIN : 536- 540: klaey Vks-E-L gveld PHSG_HAEIN : 702- 708: ifgnt VeqvEqL rregy PHSG_YEAST : 404- 409: lqrvl Vdl-EkL dwhea PHSG_YEAST : 429- 434: ytnht Vmq-EaL ekwpr PHSG_YEAST : 580- 586: qleky VedkEfL kkwnq PHSH_SOLTU : 217- 222: gsrkw Vgg-EvL qalay PHSH_SOLTU : 378- 383: ytnht Vlp-EaL ekwsq PHSH_SOLTU : 513- 518: ktdqw VtnlE-L lanlr PHSH_SOLTU : 513- 519: ktdqw VtnlElL anlre PHSH_SOLTU : 654- 660: vpnyn VsvaEmL ipgse PHSL_IPOBA : 421- 426: ytnht Vlp-EaL ekwsy PHSL_IPOBA : 629- 635: gtedw VlntEkL aelrk PHSL_IPOBA : 771- 776: vpdyn VsaaE-L lipas PHSL_IPOBA : 771- 777: vpdyn VsaaElL ipasg PHSL_SOLTU : 428- 433: ytnht Vlp-EaL ekwsy PHSL_SOLTU : 640- 646: gtedw VlktEkL aelqk PHSL_SOLTU : 782- 787: vpdyn VsvaE-L lipas PHSL_SOLTU : 782- 788: vpdyn VsvaElL ipasd PHSM_ECOLI : 616- 622: lpdyc VsaaEkL ipaad PHSM_ECOLI : 707- 711: kvlda Vlk-E-L esgky PHSM_KLEPN : 88- 92: gwyqq Vsd-E-L qahdv PHSM_STRPN : 74- 78: glydd Vkk-E-L aaaat Q 17: 11.5102 39( 18) V-x(1,2)-E-x(0,1)-L Occurences: 39(18) PHS1_DICDI : 359- 362: hptig Vv-E-L frkli PHS1_DICDI : 800- 803: dsqas Vd-E-L wkdqs PHS1_HUMAN : 25- 28: vgven Va-E-L kksfn PHS1_HUMAN : 355- 360: lmrif VdiEkL pwska PHS1_HUMAN : 380- 385: ytnht VlpEaL erwpv PHS1_RABIT : 24- 27: agven Vt-E-L kknfn PHS1_RABIT : 354- 359: lmrvl VdlErL dwdka PHS1_RABIT : 379- 384: ytnht VlpEaL erwpv PHS1_RAT : 25- 28: vgven Va-E-L kkgfn PHS1_RAT : 355- 360: lmrif VdiEkL pwska PHS1_RAT : 380- 385: ytnht VlpEaL erwpv PHS2_DICDI : 462- 467: ytnht VlpEaL ekwsv PHS2_HUMAN : 25- 28: agven Vt-E-L kknfn PHS2_HUMAN : 381- 386: ytnht VlpEaL erwpv PHS2_HUMAN : 743- 747: pelrq Vi-EqL ssgff PHS2_RAT : 222- 225: kcqdk Vs-E-L yknpr PHS3_HUMAN : 380- 385: ytnht VlpEaL erwpv PHSG_BACSU : 252- 256: retea Vs-EfL ypddt PHSG_BACSU : 315- 318: hpala Vp-E-L mrill PHSG_ECOLI : 437- 440: hkvng Vs-E-L hsnlm PHSG_ECOLI : 484- 489: pslsa VldEhL grnwr PHSG_ECOLI : 700- 703: ntaee Ve-E-L rrqgy PHSG_ECOLI : 770- 773: dcqdk Vd-E-L yelqe PHSG_HAEIN : 536- 540: klaey VksE-L gveld PHSG_YEAST : 404- 409: lqrvl VdlEkL dwhea PHSG_YEAST : 429- 434: ytnht VmqEaL ekwpr PHSG_YEAST : 506- 509: hkvng Vv-E-L hseli PHSG_YEAST : 788- 791: nlsen Ve-E-L rynhq PHSH_SOLTU : 217- 222: gsrkw VggEvL qalay PHSH_SOLTU : 378- 383: ytnht VlpEaL ekwsq PHSH_SOLTU : 656- 660: nynvs Va-EmL ipgse PHSL_IPOBA : 421- 426: ytnht VlpEaL ekwsy PHSL_SOLTU : 428- 433: ytnht VlpEaL ekwsy PHSL_SOLTU : 494- 497: dlpss Va-E-L fikpe PHSL_SOLTU : 784- 787: dynvs Va-E-L lipas PHSL_SOLTU : 784- 788: dynvs Va-ElL ipasd PHSM_ECOLI : 39- 43: qwwla Vs-EaL aemlr PHSM_ECOLI : 707- 711: kvlda VlkE-L esgky PHSM_KLEPN : 88- 92: gwyqq VsdE-L qahdv PHSM_STRPN : 74- 78: glydd VkkE-L aaaat R 18: 11.5102 61( 18) L-x(0,1)-G-x(0,1)-L Occurences: 61(18) PHS1_DICDI : 153- 156: lgngg L-GrL aacfm PHS1_HUMAN : 103- 105: ntmin L-G-L qnacd PHS1_HUMAN : 116- 118: eaiyq L-G-L dieel PHS1_HUMAN : 137- 140: lgngg L-GrL aacfl PHS1_HUMAN : 151- 153: dsmat L-G-L aaygy PHS1_HUMAN : 684- 688: nmkfm LnGaL tigtm PHS1_RABIT : 115- 117: eatyq L-G-L dmeel PHS1_RABIT : 136- 139: lgngg L-GrL aacfl PHS1_RABIT : 150- 152: dsmat L-G-L aaygy PHS1_RABIT : 683- 687: nmkfm LnGaL tigtm PHS1_RAT : 103- 105: ntmin L-G-L qnacd PHS1_RAT : 116- 118: eaiyq L-G-L dmeel PHS1_RAT : 137- 140: lgngg L-GrL aacfl PHS1_RAT : 151- 153: dsmat L-G-L aaygy PHS1_RAT : 684- 688: nmkfm LnGaL tigtm PHS2_DICDI : 189- 191: nslsa L-G-L vgkys PHS2_DICDI : 223- 226: lgngg L-GrL aacfm PHS2_HUMAN : 116- 118: eatyq L-G-L dmeel PHS2_HUMAN : 137- 140: lgngg L-GrL aacfl PHS2_HUMAN : 151- 153: dsmat L-G-L aaygy PHS2_HUMAN : 685- 689: nmkfm LnGaL tigtm PHS2_RAT : 118- 122: nmkfm LnGaL tigtm PHS3_HUMAN : 19- 22: isvrg LaG-L gdvae PHS3_HUMAN : 103- 105: ntmvn L-G-L qnacd PHS3_HUMAN : 116- 118: eaiyq L-G-L dleel PHS3_HUMAN : 137- 140: lgngg L-GrL aacfl PHS3_HUMAN : 151- 153: dsmat L-G-L aaygy PHS3_HUMAN : 684- 688: nmkfm LnGaL tigtm PHSG_BACSU : 71- 75: lsief LlGqL leqnl PHSG_BACSU : 72- 75: siefl L-GqL leqnl PHSG_BACSU : 117- 120: lgngg L-GrL aacfl PHSG_BACSU : 295- 298: kthks LsG-L hkkvs PHSG_ECOLI : 126- 129: lgngg L-GrL aacfl PHSG_ECOLI : 140- 142: dslat L-G-L pgrgy PHSG_ECOLI : 665- 669: nmkfa LnGaL tigtl PHSG_HAEIN : 131- 134: lgngg L-GrL aacfm PHSG_HAEIN : 145- 147: dsiat L-G-L pgmgy PHSG_HAEIN : 623- 627: nnder LkGrL kvvfi PHSG_HAEIN : 670- 674: nmkfa LnGaL tlgtl PHSG_HAEIN : 676- 679: ngalt L-GtL dganv PHSG_HAEIN : 749- 752: ryhql LqG-L qyhdy PHSG_YEAST : 29- 33: rltrr LtGfL pqeik PHSG_YEAST : 188- 191: lgngg L-GrL aacfv PHSG_YEAST : 441- 445: kwprr LfGhL lprhl PHSG_YEAST : 780- 784: ednvf LfGnL senve PHSH_SOLTU : 136- 139: lgngg L-GrL ascfl PHSH_SOLTU : 687- 691: nmkfa LnGcL iigtl PHSL_IPOBA : 181- 184: lgngg L-GrL ascfl PHSL_IPOBA : 398- 401: rilid LkG-L swkea PHSL_IPOBA : 809- 813: mngci LiGtL dganv PHSL_IPOBA : 877- 881: ntyde LlGsL egneg PHSL_IPOBA : 878- 881: tydel L-GsL egneg PHSL_SOLTU : 188- 191: lgngg L-GrL ascfl PHSL_SOLTU : 405- 408: rilid LkG-L nwnea PHSL_SOLTU : 888- 892: ynydd LiGsL egneg PHSM_ECOLI : 70- 74: ismef LiGrL tgnnl PHSM_ECOLI : 116- 119: lgngg L-GrL aacfl PHSM_ECOLI : 649- 653: nmkla LnGaL tvgtl PHSM_KLEPN : 70- 74: ismef LiGrL tgnnl PHSM_STRPN : 56- 60: isaef LiGkL lsnnl PHSM_STRPN : 68- 70: nnlin L-G-L yddvk S 19: 11.5102 39( 18) L-x(0,1)-I-x(1,2)-L Occurences: 39(18) PHS1_DICDI : 404- 408: mwpvs L-IedL lprhm PHS1_DICDI : 704- 709: tmngs LiIgtL dganv PHS1_DICDI : 758- 762: lqevf LnIe-L gtfgp PHS1_HUMAN : 118- 123: iyqlg LdIeeL eeiee PHS1_HUMAN : 833- 837: vepsd LkIs-L snesn PHS1_RABIT : 344- 349: dthps LaIpeL mrvlv PHS1_RAT : 345- 350: dthpa LaIpeL mrifv PHS1_RAT : 833- 837: mepsd LkIs-L skess PHS2_DICDI : 427- 432: dthpt LgIpeL mrili PHS2_DICDI : 700- 704: yymak LiIk-L insva PHS2_DICDI : 700- 704: yymak L-IikL insva PHS2_DICDI : 769- 774: smngg LiIgtL dgani PHS2_HUMAN : 346- 351: dthps LaIpeL mrilv PHS2_RAT : 17- 22: qllnc LhIitL ynrik PHS3_HUMAN : 345- 350: dthpa LsIpeL mrilv PHS3_HUMAN : 619- 623: yhmak LiIk-L vtsig PHS3_HUMAN : 619- 623: yhmak L-IikL vtsig PHS3_HUMAN : 709- 714: agaen LfIfgL rvedv PHSG_BACSU : 66- 71: kqtyy LsIefL lgqll PHSG_BACSU : 484- 487: kqpes L-Ir-L epyat PHSG_BACSU : 547- 552: qllnv LhImyL ynrlk PHSG_ECOLI : 669- 674: alnga LtIgtL dganv PHSG_HAEIN : 30- 33: sivyk L-If-L igrsp PHSG_HAEIN : 331- 336: dthpa LaIpeL mrilv PHSG_YEAST : 394- 399: dthpt LaIveL qrvlv PHSG_YEAST : 688- 692: yymak LiIk-L incva PHSG_YEAST : 688- 692: yymak L-IikL incva PHSH_SOLTU : 343- 348: dthpt LtIpeL mrllm PHSH_SOLTU : 691- 696: alngc LiIgtL dganv PHSL_IPOBA : 386- 391: dthpt LcIpeL irili PHSL_IPOBA : 391- 395: lcipe L-IriL idlkg PHSL_IPOBA : 395- 398: eliri L-Id-L kglsw PHSL_IPOBA : 809- 813: mngci L-IgtL dganv PHSL_SOLTU : 393- 398: dthpt LcIpeL mrili PHSL_SOLTU : 402- 405: elmri L-Id-L kglnw PHSL_SOLTU : 888- 892: ynydd L-IgsL egneg PHSM_ECOLI : 70- 74: ismef L-IgrL tgnnl PHSM_ECOLI : 484- 487: ndldq L-In-L vklad PHSM_ECOLI : 547- 552: qhlnl LhIlaL ykeir PHSM_KLEPN : 70- 74: ismef L-IgrL tgnnl PHSM_STRPN : 56- 60: isaef L-IgkL lsnnl PHSM_STRPN : 65- 68: llsnn L-In-L glydd T 20: 11.5102 44( 18) N-x(4,5)-G-x(4,5)-V Occurences: 44(18) PHS1_DICDI : 724- 735: evgqe Nmfif-GlrtseV eaare PHS1_HUMAN : 632- 643: vadvv NndpmvGsklk-V iflen PHS1_HUMAN : 633- 643: advvn Ndpmv-Gsklk-V iflen PHS1_HUMAN : 708- 719: eagee Nlfif-GmsiddV aaldk PHS1_RABIT : 631- 642: igdvv NhdpvvGdrlr-V iflen PHS1_RABIT : 707- 718: eagee Nffif-GmrvedV drldq PHS1_RAT : 632- 643: vaevv NndpmvGsklk-V iflen PHS1_RAT : 633- 643: aevvn Ndpmv-Gsklk-V iflen PHS1_RAT : 708- 719: eagee Nlfif-GmrvddV aaldk PHS2_DICDI : 713- 724: vadvv NndpkvGdllk-V vfipn PHS2_DICDI : 713- 725: vadvv NndpkvGdllkvV fipny PHS2_DICDI : 714- 724: advvn Ndpkv-Gdllk-V vfipn PHS2_DICDI : 714- 725: advvn Ndpkv-GdllkvV fipny PHS2_DICDI : 789- 800: aighe Nmyif-GarseeV nkvkk PHS2_HUMAN : 633- 644: igdvv NhdpavGdrlr-V iflen PHS2_HUMAN : 709- 720: eagee Nffif-GmrvedV dkldq PHS2_RAT : 142- 153: eaged Nffif-GmrvedV erldn PHS3_HUMAN : 632- 643: igdvv NhdpvvGdrlk-V iflen PHS3_HUMAN : 708- 719: eagae Nlfif-GlrvedV ealdr PHSG_BACSU : 79- 89: qlleq Nlmnl-Gvrdv-V eaglk PHSG_ECOLI : 87- 98: grtls NamlslGiyed-V qgale PHSG_ECOLI : 613- 624: vakvi NndpqiGdklk-V vfipn PHSG_ECOLI : 613- 625: vakvi NndpqiGdklkvV fipny PHSG_ECOLI : 614- 624: akvin Ndpqi-Gdklk-V vfipn PHSG_ECOLI : 614- 625: akvin Ndpqi-GdklkvV fipny PHSG_ECOLI : 689- 700: hvgad Nifif-GntaeeV eelrr PHSG_HAEIN : 619- 630: anvin NderlkGrlkv-V fipny PHSG_HAEIN : 694- 705: nvged Nifif-GntveqV eqlrr PHSG_YEAST : 653- 664: ylamk Nmlkn-GasieeV akkyp PHSG_YEAST : 777- 788: eiged Nvflf-GnlsenV eelry PHSH_SOLTU : 711- 722: eiged Nfflf-GatadeV pqlrk PHSH_SOLTU : 767- 778: esleg NsgygrGdyfl-V ghdfp PHSL_IPOBA : 559- 571: mvrma NlcvvgGhavngV aeihs PHSL_IPOBA : 752- 763: vgati NhdpeiGdllk-V ifvpd PHSL_IPOBA : 884- 895: gsleg NegfgrGdyfl-V gkdfp PHSL_SOLTU : 527- 538: dkvvt NdeddtGkkts-V kieaa PHSL_SOLTU : 570- 582: kvrma NlcvvgGhavngV aeihs PHSL_SOLTU : 763- 774: vgati NhdpeiGdllk-V vfvpd PHSL_SOLTU : 763- 775: vgati NhdpeiGdllkvV fvpdy PHSM_ECOLI : 77- 88: grltg NnllnlGwyqd-V qdslk PHSM_ECOLI : 78- 88: rltgn Nllnl-Gwyqd-V qdslk PHSM_ECOLI : 409- 421: qvhma NlcvvgGfavngV aalhs PHSM_ECOLI : 597- 608: vadvi NndplvGdklk-V vflpd PHSM_ECOLI : 597- 609: vadvi NndplvGdklkvV flpdy PHSM_ECOLI : 598- 608: advin Ndplv-Gdklk-V vflpd PHSM_ECOLI : 598- 609: advin Ndplv-GdklkvV flpdy PHSM_ECOLI : 673- 684: kvgee Nifif-GhtveqV kaila PHSM_KLEPN : 77- 88: grltg NnllnlGwyqq-V sdelq PHSM_KLEPN : 78- 88: rltgn Nllnl-Gwyqq-V sdelq PHSM_STRPN : 63- 74: gklls NnlinlGlydd-V kkela PHSM_STRPN : 64- 74: kllsn Nlinl-Glydd-V kkela Number of patterns evaluated by Pratt:1445 Total running time: 4 seconds