------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 73 sequences from file PHOSPHOPANTETHEINE

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 73
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols                9
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename       PHOSPHOPANTETHEINE.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    ACP1_ARATH    137
    ACP1_BRANA    134
    ACP1_HORVU    149
    ACP1_SPIOL    138
    ACP2_ARATH    154
    ACP2_BRANA    134
    ACP2_HORVU    129
    ACP2_SPIOL    130
    ACP3_ARATH    158
    ACP3_BRANA    134
    ACP3_HORVU    132
    ACP5_BRANA    134
    ACPA_STRCO     86
     ACP_ANAVA     76
     ACP_BRACM    134
     ACP_CRYPH     81
     ACP_CYLSN     80
     ACP_ECOLI     77
     ACP_HAEIN     76
     ACP_NEUCR    134
     ACP_RHIME     77
     ACP_RHOSH     69
     ACP_SACER     46
     ACP_STRCM     88
     ACP_STRCN     86
     ACP_STRCO     90
     ACP_STRGA     83
     ACP_STRHA     92
     ACP_STRRM     95
     ACP_STRVN     85
     ACP_SYNY3     61
     ACP_YEAST    125
    ACVS_CEPAC   3712
    ACVS_EMENI   3770
    ACVS_NOCLA   3649
    ACVS_PENCH   3746
    ACVT_PENCH   3791
    DHBF_BACSU     95
    ENTF_ECOLI   1293
    ENTF_SHIFL     30
    ERY1_SACER   3491
    ERY2_SACER   3567
    ERY3_SACER   3170
    FAS2_CANAL   1885
    FAS2_PENPA   1857
    FAS2_YEAST   1894
     FAS_ANSAN    352
     FAS_CAPHI     35
     FAS_CHICK   2446
     FAS_MOUSE    838
     FAS_RABIT     64
       FAS_RAT   2505
    GRSA_BACBR   1098
    GRSB_BACBR   4451
    HTS1_COCCA   5217
    LYS2_SCHPO    470
    LYS2_YEAST   1392
    MCAS_MYCBO   2110
    MSAS_PENPA   1774
    NODF_RHILT     92
    NODF_RHILV     92
    NODF_RHIME     93
    NODF_RHIMS     90
    PKSK_BACSU   4447
    PKSL_BACSU   4427
    PKSM_BACSU   1763
    PPS1_BACSU   2561
    PPS2_BACSU   2560
    SRF1_BACSU   3587
    SRF2_BACSU   3582
    TYCA_BACBR   1087
      WA_EMENI   1986
    YFX1_RHILV     64

Pratt run started at Thu Feb  6 20:39:44 1997

No patterns found