------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 28 sequences from file PFKB_KINASES_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 28 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PFKB_KINASES_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: INGK_ECOLI 433 K1PF_ECOLI 312 K1PF_HAEIN 313 K1PF_RHOCA 316 K1PF_XANCP 318 K6P2_ECOLI 308 KDGK_ECOLI 309 KDGK_ERWCH 327 KDGK_HAEIN 314 LACC_LACLA 310 LACC_STAAU 310 LACC_STRMU 310 RBSK_BACSU 286 RBSK_ECOLI 309 RBSK_HAEIN 306 RBSK_YEAST 333 SCRK_ECOLI 305 SCRK_KLEPN 307 SCRK_RHILT 326 SCRK_SALTH 221 SCRK_SALTY 307 SCRK_SOLTU 319 SCRK_VIBAL 307 YEIC_ECOLI 313 YEII_ECOLI 344 YHFQ_ECOLI 261 YIHV_ECOLI 300 YXDC_BACSU 325 Pratt run started at Thu Feb 6 20:39:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 79( 28) A-x(0,1)-G-x(3,5)-A 2: 11.0102 68( 28) A-x(0,1)-G-x(2,4)-A 3: 11.0102 63( 28) G-x(0,2)-G-x(4,5)-A 4: 11.0102 59( 28) V-x(1,3)-D-x(3,4)-A 5: 11.0102 88( 28) V-x(2,4)-G-x(0,1)-A 6: 10.5102 97( 28) G-x(3,5)-A-x(0,2)-L 7: 10.5102 82( 28) G-x(1,3)-A-x(1,3)-L 8: 10.5102 84( 28) V-x(3,5)-G-x(1,3)-G 9: 10.5102 92( 28) V-x(0,2)-V-x(3,5)-G 10: 10.5102 79( 28) V-x(1,3)-L-x(1,3)-G 11: 8.3401 111( 28) G-A 12: 8.3401 116( 28) G-x(3)-A 13: 8.3401 102( 28) A-x-G 14: 8.3401 129( 28) A-x(5)-A 15: 8.3401 115( 28) L-A 16: 8.3401 97( 28) G-x(5)-A 17: 8.3401 119( 28) A-x(5)-L 18: 8.3401 48( 28) D-x-T 19: 8.3401 101( 28) L-x-A 20: 8.3401 71( 28) S-x(2)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.0102 79( 28) A-x(0,1)-G-x(3,5)-A B 2: 11.0102 68( 28) A-x(0,1)-G-x(2,4)-A C 3: 11.0102 63( 28) G-x(0,2)-G-x(4,5)-A D 4: 11.0102 59( 28) V-x(1,3)-D-x(3,4)-A E 5: 11.0102 88( 28) V-x(2,4)-G-x(0,1)-A F 6: 10.9909 51( 28) G-x(3)-[ANV]-x-A G 7: 10.5333 70( 28) A-x(3)-[AGTV]-x-L H 8: 10.5102 97( 28) G-x(3,5)-A-x(0,2)-L I 9: 10.5102 82( 28) G-x(1,3)-A-x(1,3)-L J 10: 10.5102 84( 28) V-x(3,5)-G-x(1,3)-G K 11: 10.5102 92( 28) V-x(0,2)-V-x(3,5)-G L 12: 10.5102 79( 28) V-x(1,3)-L-x(1,3)-G M 13: 8.3401 111( 28) G-A N 14: 8.3401 116( 28) G-x(3)-A O 15: 8.3401 102( 28) A-x-G P 16: 8.3401 129( 28) A-x(5)-A Q 17: 8.3401 115( 28) L-A R 18: 8.3401 48( 28) D-x-T S 19: 8.3401 101( 28) L-x-A T 20: 8.3401 71( 28) S-x(2)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.0102 79( 28) A-x(0,1)-G-x(3,5)-A Occurences: 79(28) INGK_ECOLI : 293- 300: iglym A-GftedeA krktq INGK_ECOLI : 356- 362: mntng A-Gdgal-A alpdd INGK_ECOLI : 356- 363: mntng A-GdgalaA lpddi K1PF_ECOLI : 38- 46: ttglh AaGkginvA kvlkd K1PF_ECOLI : 39- 46: tglha A-GkginvA kvlkd K1PF_ECOLI : 175- 180: realv A-Glka--A pwlvk K1PF_ECOLI : 226- 234: vislg AeGalwvnA sgewi K1PF_ECOLI : 234- 240: alwvn AsGewi--A kppsv K1PF_HAEIN : 38- 45: lglfp A-GkginvA kvlkd K1PF_HAEIN : 253- 259: vstvg A-Gdsmv-A gliyg K1PF_RHOCA : 38- 46: asrid AgGkgvnvA sflah K1PF_RHOCA : 76- 82: arhfa AtGlvd--A cqrlp K1PF_RHOCA : 113- 121: nfpgi AaGpadldA vaatl K1PF_RHOCA : 114- 121: fpgia A-GpadldA vaatl K1PF_RHOCA : 131- 138: ltell AqGldwv-A lcgsl K1PF_RHOCA : 145- 151: cgslp A-Gigae-A yaela K1PF_RHOCA : 174- 180: dtsgp AlGlal--A arpdi K1PF_RHOCA : 174- 181: dtsgp AlGlala-A rpdiv K1PF_RHOCA : 216- 223: ardla AsGvglv-A vsmga K1PF_RHOCA : 255- 261: astvg A-Gdamv-A gliha K1PF_RHOCA : 261- 266: gdamv A-Glih--A atlgl K1PF_RHOCA : 261- 267: gdamv A-Gliha-A tlgld K1PF_XANCP : 38- 46: svrnd AgGkginvA aclad K1PF_XANCP : 67- 72: lgvgn A-Gvfe--A lfrer K1PF_XANCP : 160- 167: qaqas AaGstrp-A rhqrc K1PF_XANCP : 161- 167: aqasa A-Gstrp-A rhqrc K1PF_XANCP : 251- 258: rpprl AqGssvg-A gdamv K1PF_XANCP : 258- 264: gssvg A-Gdamv-A glaaa K1PF_XANCP : 264- 269: gdamv A-Glaa--A lldda K6P2_ECOLI : 253- 260: qstvg A-GdrlvgA mtlkl KDGK_ECOLI : 261- 268: vidtt AaGdsfs-A gylav KDGK_ECOLI : 262- 268: idtta A-Gdsfs-A gylav KDGK_ERWCH : 262- 269: vvdtt AaGdsfs-A gylsv KDGK_ERWCH : 263- 269: vdtta A-Gdsfs-A gylsv KDGK_HAEIN : 261- 267: vdtts A-Gdsfn-A gflng LACC_LACLA : 258- 263: gdstv A-Gias--A lnskk LACC_STAAU : 258- 263: gdstv A-Gits--A ilnhe LACC_STRMU : 258- 263: gdstv A-Gits--A laaga LACC_STRMU : 258- 265: gdstv A-GitsalA agasd RBSK_BACSU : 240- 246: vdttg A-Gdtfn-A afava RBSK_BACSU : 240- 247: vdttg A-GdtfnaA faval RBSK_BACSU : 253- 260: faval AeGkdie-A alrfa RBSK_BACSU : 253- 261: faval AeGkdieaA lrfan RBSK_ECOLI : 39- 45: nhyqv AfGgkg--A nqava RBSK_ECOLI : 50- 56: anqav AaGrsg--A niafi RBSK_ECOLI : 51- 56: nqava A-Grsg--A niafi RBSK_ECOLI : 114- 119: vigih A-Gana--A lspal RBSK_ECOLI : 252- 260: avdti AaGdtfngA lital RBSK_ECOLI : 253- 260: vdtia A-GdtfngA lital RBSK_HAEIN : 37- 43: qnyqi AyGgkg--A nqava RBSK_YEAST : 23- 29: drlpn A-Getfr-A nhfet RBSK_YEAST : 36- 44: hfeth AgGkglnqA aaigk SCRK_ECOLI : 249- 255: vdstg A-Gdafv-A glltg SCRK_KLEPN : 223- 228: vtqgk A-Gvqa--A lrgqv SCRK_KLEPN : 249- 255: vdttg A-Gdafv-A gllag SCRK_KLEPN : 255- 262: gdafv A-GllaglA ahgip SCRK_KLEPN : 263- 271: lagla AhGipdnlA alapd SCRK_KLEPN : 290- 296: alatt AkGamt--A lpykd SCRK_RHILT : 28- 36: gfapy AgGaifntA ialgr SCRK_RHILT : 104- 111: ydegt A-GrmittA dlpdl SCRK_RHILT : 247- 253: vdtvg A-Gdtfd-A gilas SCRK_SALTH : 137- 142: vtrgk A-Gvla--A fqqkf SCRK_SALTH : 163- 169: vdttg A-Gdafv-A gllas SCRK_SALTH : 169- 176: gdafv A-GllaslA angmp SCRK_SALTH : 204- 210: alatt AkGamt--A lpyqr SCRK_SALTY : 223- 228: vtrgk A-Gvla--A fqqkf SCRK_SALTY : 249- 255: vdttg A-Gdafv-A gllas SCRK_SALTY : 255- 262: gdafv A-GllaslA angmp SCRK_SALTY : 290- 296: alatt AkGamt--A lpyqr SCRK_SOLTU : 35- 41: vslae ApGflk--A pggap SCRK_SOLTU : 41- 47: pgflk ApGgap--A nvaia SCRK_SOLTU : 256- 263: vdttg A-GdsfvgA lltki SCRK_VIBAL : 200- 207: dstsm AqGlqqi-A amnia SCRK_VIBAL : 200- 208: dstsm AqGlqqiaA mnial SCRK_VIBAL : 278- 285: saiqw AnGcgal-A ttqkg YEIC_ECOLI : 254- 260: invtg A-Gdamm-A glasc YEIC_ECOLI : 279- 286: esvrf AqGcssm-A lscey YEII_ECOLI : 92- 100: tihcs AgGvgrniA hnlal YEII_ECOLI : 188- 193: dllrh A-Gvvl--A dcnlt YHFQ_ECOLI : 135- 141: fpqlh AaGklt--A fdfsd YHFQ_ECOLI : 136- 141: pqlha A-Gklt--A fdfsd YHFQ_ECOLI : 222- 228: idtmg A-Gdsfi-A gflcg YHFQ_ECOLI : 236- 243: lcgws A-GmtlpqA iaqgt YHFQ_ECOLI : 245- 251: lpqai AqGtac--A aktiq YHFQ_ECOLI : 245- 252: lpqai AqGtaca-A ktiqy YIHV_ECOLI : 244- 251: vdttg A-GdvfhgA laval YXDC_BACSU : 269- 274: lktfg A-Gdsy--A safiy YXDC_BACSU : 269- 276: lktfg A-GdsyasA fiygl B 2: 11.0102 68( 28) A-x(0,1)-G-x(2,4)-A Occurences: 68(28) INGK_ECOLI : 185- 189: pedvi A-Gas--A lvlts INGK_ECOLI : 356- 360: mntng A-Gdg--A laalp INGK_ECOLI : 356- 362: mntng A-GdgalA alpdd K1PF_ECOLI : 175- 179: realv A-Glk--A apwlv K1PF_ECOLI : 175- 180: realv A-Glka-A pwlvk K1PF_ECOLI : 234- 240: alwvn AsGewi-A kppsv K1PF_HAEIN : 174- 178: naalt A-Glk--A kpwlv K1PF_HAEIN : 253- 259: vstvg A-GdsmvA gliyg K1PF_RHOCA : 76- 82: arhfa AtGlvd-A cqrlp K1PF_RHOCA : 131- 138: ltell AqGldwvA lcgsl K1PF_RHOCA : 145- 149: cgslp A-Gig--A eayae K1PF_RHOCA : 145- 151: cgslp A-GigaeA yaela K1PF_RHOCA : 174- 180: dtsgp AlGlal-A arpdi K1PF_RHOCA : 174- 181: dtsgp AlGlalaA rpdiv K1PF_RHOCA : 216- 223: ardla AsGvglvA vsmga K1PF_RHOCA : 255- 261: astvg A-GdamvA gliha K1PF_RHOCA : 261- 266: gdamv A-Glih-A atlgl K1PF_RHOCA : 261- 267: gdamv A-GlihaA tlgld K1PF_XANCP : 67- 72: lgvgn A-Gvfe-A lfrer K1PF_XANCP : 160- 167: qaqas AaGstrpA rhqrc K1PF_XANCP : 161- 167: aqasa A-GstrpA rhqrc K1PF_XANCP : 251- 258: rpprl AqGssvgA gdamv K1PF_XANCP : 258- 264: gssvg A-GdamvA glaaa K1PF_XANCP : 264- 268: gdamv A-Gla--A alldd K1PF_XANCP : 264- 269: gdamv A-Glaa-A lldda K6P2_ECOLI : 280- 285: vrfgv AaGsa--A tlnqg K6P2_ECOLI : 281- 285: rfgva A-Gsa--A tlnqg KDGK_ECOLI : 261- 268: vidtt AaGdsfsA gylav KDGK_ECOLI : 262- 268: idtta A-GdsfsA gylav KDGK_ECOLI : 268- 272: gdsfs A-Gyl--A vrltg KDGK_ERWCH : 262- 269: vvdtt AaGdsfsA gylsv KDGK_ERWCH : 263- 269: vdtta A-GdsfsA gylsv KDGK_HAEIN : 261- 267: vdtts A-GdsfnA gflng LACC_LACLA : 258- 263: gdstv A-Gias-A lnskk LACC_STAAU : 225- 230: ivslg AqGaf--A khnht LACC_STAAU : 258- 263: gdstv A-Gits-A ilnhe LACC_STRMU : 258- 263: gdstv A-Gits-A laaga RBSK_BACSU : 240- 246: vdttg A-GdtfnA afava RBSK_BACSU : 253- 260: faval AeGkdieA alrfa RBSK_ECOLI : 39- 45: nhyqv AfGgkg-A nqava RBSK_ECOLI : 50- 56: anqav AaGrsg-A niafi RBSK_ECOLI : 51- 56: nqava A-Grsg-A niafi RBSK_ECOLI : 114- 118: vigih A-Gan--A alspa RBSK_ECOLI : 114- 119: vigih A-Gana-A lspal RBSK_HAEIN : 37- 43: qnyqi AyGgkg-A nqava RBSK_YEAST : 23- 29: drlpn A-GetfrA nhfet SCRK_ECOLI : 249- 255: vdstg A-GdafvA glltg SCRK_KLEPN : 223- 227: vtqgk A-Gvq--A alrgq SCRK_KLEPN : 223- 228: vtqgk A-Gvqa-A lrgqv SCRK_KLEPN : 249- 255: vdttg A-GdafvA gllag SCRK_KLEPN : 255- 259: gdafv A-Gll--A glaah SCRK_KLEPN : 259- 263: vagll A-Gla--A hgipd SCRK_KLEPN : 290- 296: alatt AkGamt-A lpykd SCRK_RHILT : 247- 253: vdtvg A-GdtfdA gilas SCRK_RHILT : 253- 257: gdtfd A-Gil--A slkmd SCRK_SALTH : 137- 141: vtrgk A-Gvl--A afqqk SCRK_SALTH : 137- 142: vtrgk A-Gvla-A fqqkf SCRK_SALTH : 163- 169: vdttg A-GdafvA gllas SCRK_SALTH : 169- 173: gdafv A-Gll--A slaan SCRK_SALTH : 204- 210: alatt AkGamt-A lpyqr SCRK_SALTY : 223- 227: vtrgk A-Gvl--A afqqk SCRK_SALTY : 223- 228: vtrgk A-Gvla-A fqqkf SCRK_SALTY : 249- 255: vdttg A-GdafvA gllas SCRK_SALTY : 255- 259: gdafv A-Gll--A slaan SCRK_SALTY : 290- 296: alatt AkGamt-A lpyqr SCRK_SOLTU : 35- 41: vslae ApGflk-A pggap SCRK_SOLTU : 41- 47: pgflk ApGgap-A nvaia SCRK_VIBAL : 200- 207: dstsm AqGlqqiA amnia SCRK_VIBAL : 278- 283: saiqw AnGcg--A lattq SCRK_VIBAL : 278- 285: saiqw AnGcgalA ttqkg YEIC_ECOLI : 254- 260: invtg A-GdammA glasc YEIC_ECOLI : 279- 286: esvrf AqGcssmA lscey YEII_ECOLI : 188- 193: dllrh A-Gvvl-A dcnlt YHFQ_ECOLI : 135- 141: fpqlh AaGklt-A fdfsd YHFQ_ECOLI : 136- 141: pqlha A-Gklt-A fdfsd YHFQ_ECOLI : 222- 228: idtmg A-GdsfiA gflcg YHFQ_ECOLI : 245- 251: lpqai AqGtac-A aktiq YHFQ_ECOLI : 245- 252: lpqai AqGtacaA ktiqy YIHV_ECOLI : 269- 274: esvrf AsGva--A lkctr YXDC_BACSU : 269- 274: lktfg A-Gdsy-A safiy C 3: 11.0102 63( 28) G-x(0,2)-G-x(4,5)-A Occurences: 63(28) INGK_ECOLI : 157- 165: cftli GesGertf-A ispgh INGK_ECOLI : 355- 362: imntn Ga-Gdgal-A alpdd INGK_ECOLI : 355- 363: imntn Ga-GdgalaA lpddi K1PF_ECOLI : 225- 234: vvisl GaeGalwvnA sgewi K1PF_HAEIN : 59- 67: nvavg GflGkdns-A dfeqm K1PF_HAEIN : 252- 259: vvstv Ga-Gdsmv-A gliyg K1PF_RHOCA : 39- 46: srida G--GkgvnvA sflah K1PF_RHOCA : 60- 68: gvavt GllGaena-A lfarh K1PF_RHOCA : 146- 153: gslpa Gi-Gaeay-A elaal K1PF_RHOCA : 254- 261: iastv Ga-Gdamv-A gliha K1PF_XANCP : 39- 47: vrnda GgkGinva-A cladw K1PF_XANCP : 39- 46: vrnda G--GkginvA aclad K1PF_XANCP : 40- 47: rndag Gk-Ginva-A cladw K1PF_XANCP : 257- 264: qgssv Ga-Gdamv-A glaaa K6P2_ECOLI : 38- 44: rcsnp G--Gginv-A raiah K6P2_ECOLI : 38- 46: rcsnp Gg-GinvarA iahlg K6P2_ECOLI : 39- 46: csnpg G--GinvarA iahlg K6P2_ECOLI : 168- 176: sstvl Gq-GlsaalA ignie K6P2_ECOLI : 252- 260: sqstv Ga-GdrlvgA mtlkl KDGK_ECOLI : 240- 248: lvsia Ge-GlvdvpA vklpk KDGK_ECOLI : 277- 283: avrlt G--Gsaed-A akrgh KDGK_ECOLI : 277- 284: avrlt G--GsaedaA krghl KDGK_ERWCH : 26- 35: risir GfgGdtlntA vyisr KDGK_ERWCH : 28- 35: sirgf G--GdtlntA vyisr KDGK_ERWCH : 278- 284: svrln G--Gsaqd-A akrgh KDGK_ERWCH : 278- 285: svrln G--GsaqdaA krghl KDGK_HAEIN : 27- 34: mwqsy G--GdtlnsA tylsr LACC_LACLA : 251- 258: vvnpv Gs-Gdstv-A giasa LACC_STAAU : 251- 258: vlnpv Gs-Gdstv-A gitsa LACC_STRMU : 61- 69: sgllg GklGefle-A eldks LACC_STRMU : 251- 258: vvnpv Gs-Gdstv-A gitsa RBSK_BACSU : 38- 45: fqtvp G--GkganqA vaaar RBSK_BACSU : 38- 47: fqtvp GgkGanqavA aarlg RBSK_BACSU : 39- 47: qtvpg Gk-GanqavA aarlg RBSK_BACSU : 212- 220: lfite GkqGvrys-A gskev RBSK_BACSU : 239- 246: pvdtt Ga-Gdtfn-A afava RBSK_BACSU : 239- 247: pvdtt Ga-GdtfnaA faval RBSK_ECOLI : 41- 48: yqvaf G--GkganqA vaagr RBSK_ECOLI : 41- 50: yqvaf GgkGanqavA agrsg RBSK_ECOLI : 42- 50: qvafg Gk-GanqavA agrsg RBSK_HAEIN : 39- 46: yqiay G--GkganqA vaaar RBSK_HAEIN : 39- 48: yqiay GgkGanqavA aarlg RBSK_HAEIN : 40- 48: qiayg Gk-GanqavA aarlg RBSK_YEAST : 37- 45: fetha GgkGlnqa-A aigkl RBSK_YEAST : 37- 44: fetha G--GkglnqA aaigk RBSK_YEAST : 37- 46: fetha GgkGlnqaaA igklk RBSK_YEAST : 38- 45: ethag Gk-Glnqa-A aigkl RBSK_YEAST : 38- 46: ethag Gk-GlnqaaA igklk SCRK_ECOLI : 28- 35: llpcp G--GapanvA vgiar SCRK_ECOLI : 49- 58: tsgfi GrvGddpfgA lmqrt SCRK_ECOLI : 248- 255: cvdst Ga-Gdafv-A glltg SCRK_KLEPN : 28- 35: llqcp G--GapanvA vgvar SCRK_KLEPN : 248- 255: avdtt Ga-Gdafv-A gllag SCRK_RHILT : 20- 28: rdttl GekGfapy-A ggaif SCRK_RHILT : 29- 36: fapya G--GaifntA ialgr SCRK_RHILT : 102- 111: afyde GtaGrmittA dlpdl SCRK_RHILT : 194- 203: dldwf GlqGdhdalA ahwln SCRK_RHILT : 246- 253: vvdtv Ga-Gdtfd-A gilas SCRK_SALTH : 162- 169: svdtt Ga-Gdafv-A gllas SCRK_SALTY : 28- 35: llqcp G--GapanvA vgvar SCRK_SALTY : 248- 255: svdtt Ga-Gdafv-A gllas SCRK_SOLTU : 43- 50: flkap G--GapanvA iavtr SCRK_SOLTU : 255- 263: tvdtt Ga-GdsfvgA lltki SCRK_VIBAL : 27- 34: llkcp G--GapanvA vaiar YEIC_ECOLI : 40- 47: ikftp G--GvgrniA qnlal YEIC_ECOLI : 253- 260: vinvt Ga-Gdamm-A glasc YEII_ECOLI : 93- 100: ihcsa G--GvgrniA hnlal YHFQ_ECOLI : 24- 31: nkafs G--GnavnvA vyctr YHFQ_ECOLI : 221- 228: vidtm Ga-Gdsfi-A gflcg YIHV_ECOLI : 39- 46: nytev Gg-Gpaat-A avaaa YIHV_ECOLI : 39- 46: nytev G--GgpaatA avaaa YIHV_ECOLI : 39- 47: nytev Gg-GpaataA vaaar YIHV_ECOLI : 40- 46: ytevg G--Gpaat-A avaaa YIHV_ECOLI : 40- 47: ytevg G--GpaataA vaaar YIHV_ECOLI : 226- 233: dwlen G--GrqhqpA fkvdv YIHV_ECOLI : 243- 251: vvdtt Ga-GdvfhgA laval YXDC_BACSU : 43- 50: fskyv G--GspaniA igsak YXDC_BACSU : 268- 276: vlktf Ga-GdsyasA fiygl D 4: 11.0102 59( 28) V-x(1,3)-D-x(3,4)-A Occurences: 59(28) INGK_ECOLI : 67- 75: aghsl ViedDvae-A lyqel INGK_ECOLI : 67- 75: aghsl Vie-DdvaeA lyqel K1PF_ECOLI : 291- 300: vsqsn VgitDrpqlA ammar K1PF_HAEIN : 163- 170: qagvk Vvl-Dssn-A altag K1PF_HAEIN : 163- 171: qagvk Vvl-DssnaA ltagl K1PF_HAEIN : 164- 170: agvkv Vl--Dssn-A altag K1PF_HAEIN : 164- 171: agvkv Vl--DssnaA ltagl K1PF_HAEIN : 251- 259: nvvst VgagDsmv-A gliyg K1PF_RHOCA : 166- 174: kggar Val-DtsgpA lglal K1PF_RHOCA : 253- 261: piast VgagDamv-A gliha K1PF_XANCP : 237- 245: egalf Vqr-DqqliA rpprl K1PF_XANCP : 256- 264: aqgss VgagDamv-A glaaa K1PF_XANCP : 305- 311: itpeg Vr--Daaa-A vviga K6P2_ECOLI : 251- 260: ksqst VgagDrlvgA mtlkl KDGK_ECOLI : 256- 262: lpkek Vi--Dtta-A gdsfs KDGK_ERWCH : 257- 263: lpkek Vv--Dtta-A gdsfs KDGK_HAEIN : 196- 203: vnial Vtf-Ddeq-A lwkdk KDGK_HAEIN : 255- 261: epiln Vv--Dtts-A gdsfn LACC_LACLA : 28- 35: dtvnr Vk--DvsktA ggkgl LACC_LACLA : 160- 167: degva Vvl-Dcsg-A pletv LACC_LACLA : 161- 167: egvav Vl--Dcsg-A pletv LACC_LACLA : 250- 258: pvvnp VgsgDstv-A giasa LACC_STAAU : 160- 167: nkgvp Vil-Dcsg-A tlqtv LACC_STAAU : 250- 258: svlnp VgsgDstv-A gitsa LACC_STRMU : 161- 168: hqvpi Vl--DcsgqA llevl LACC_STRMU : 250- 258: avvnp VgsgDstv-A gitsa RBSK_BACSU : 15- 24: csmdl VvtsDkrpkA getvl RBSK_BACSU : 16- 24: smdlv Vts-DkrpkA getvl RBSK_BACSU : 61- 69: fmvgk Vgd-DhygtA ilnnl RBSK_BACSU : 232- 240: ipsfp VepvDttg-A gdtfn RBSK_ECOLI : 199- 206: ltgir Ven-Deda-A kaaqv RBSK_ECOLI : 245- 253: vpgfr VqavDtia-A gdtfn RBSK_HAEIN : 195- 203: eiltg VevaDeqs-A vkaas RBSK_HAEIN : 197- 203: ltgve Va--Deqs-A vkaas RBSK_HAEIN : 243- 251: ikgfc VqaiDtta-A gdtfn RBSK_YEAST : 273- 281: paiqn VsvvDttg-A gdtfl RBSK_YEAST : 275- 281: iqnvs Vv--Dttg-A gdtfl SCRK_ECOLI : 51- 58: gfigr Vgd-Dpfg-A lmqrt SCRK_ECOLI : 51- 58: gfigr Vg--DdpfgA lmqrt SCRK_ECOLI : 241- 249: fagms VncvDstg-A gdafv SCRK_KLEPN : 241- 249: fparp VvavDttg-A gdafv SCRK_KLEPN : 242- 249: parpv Vav-Dttg-A gdafv SCRK_RHILT : 239- 247: vpser VtvvDtvg-A gdtfd SCRK_RHILT : 241- 247: servt Vv--Dtvg-A gdtfd SCRK_RHILT : 245- 253: tvvdt VgagDtfd-A gilas SCRK_SALTH : 24- 32: adlfl Vee-DlpqfA agqwl SCRK_SALTH : 155- 163: fnarp VasvDttg-A gdafv SCRK_SALTY : 110- 118: adlfl Vee-DlpqfA agqwl SCRK_SALTY : 241- 249: fnarp VasvDttg-A gdafv SCRK_SOLTU : 248- 256: vggfh VktvDttg-A gdsfv SCRK_VIBAL : 239- 247: itgqv VspiDttg-A gdafv YEIC_ECOLI : 161- 168: aanvp Vfv-Dpvs-A wkcvk YEII_ECOLI : 190- 199: lrhag VvlaDcnltA ealew YEII_ECOLI : 191- 199: rhagv Vla-DcnltA ealew YHFQ_ECOLI : 157- 165: lwqtl VphlDfaf-A sapqe YHFQ_ECOLI : 214- 222: qapep VtviDtmg-A gdsfi YHFQ_ECOLI : 216- 222: pepvt Vi--Dtmg-A gdsfi YIHV_ECOLI : 139- 148: vvlad VrwhDgakkA ftlar YIHV_ECOLI : 236- 244: qpafk VdvvDttg-A gdvfh YIHV_ECOLI : 238- 244: afkvd Vv--Dttg-A gdvfh YXDC_BACSU : 91- 98: ttqmi Vdq-Dghk-A glaft YXDC_BACSU : 130- 138: lepse Vse-DyianA kmllv YXDC_BACSU : 282- 290: fiygl VsgkDiet-A lkygs E 5: 11.0102 88( 28) V-x(2,4)-G-x(0,1)-A Occurences: 88(28) INGK_ECOLI : 183- 187: siped Via--G-A salvl K1PF_ECOLI : 220- 226: qgiah VvislG-A egalw K1PF_ECOLI : 221- 226: giahv Visl-G-A egalw K1PF_ECOLI : 247- 253: ppsvd VvstvG-A gdsmv K1PF_ECOLI : 248- 253: psvdv Vstv-G-A gdsmv K1PF_HAEIN : 219- 225: egien ViismG-A kgslw K1PF_HAEIN : 247- 253: aqcen VvstvG-A gdsmv K1PF_HAEIN : 248- 253: qcenv Vstv-G-A gdsmv K1PF_RHOCA : 52- 57: sflah Vgh--GvA vtgll K1PF_RHOCA : 58- 64: ghgva VtgllG-A enaal K1PF_RHOCA : 190- 195: ivkpn Vael-G-A hlgrt K1PF_RHOCA : 222- 228: sgvgl VavsmG-A ggavl K1PF_RHOCA : 224- 228: vglva Vsm--G-A ggavl K1PF_RHOCA : 224- 231: vglva VsmgaGgA vlvrg K1PF_RHOCA : 232- 237: gagga Vlvr-G-A eavla K1PF_RHOCA : 253- 258: piast Vga--GdA mvagl K1PF_XANCP : 61- 67: vaalg Vlgv-GnA gvfea K1PF_XANCP : 256- 261: aqgss Vga--GdA mvagl K1PF_XANCP : 312- 316: daaaa Vvi--G-A vp K6P2_ECOLI : 106- 110: eqyrf Vmp--G-A alned K6P2_ECOLI : 106- 111: eqyrf Vmp--GaA lnede K6P2_ECOLI : 212- 217: aaqei Vns--GkA krvvv K6P2_ECOLI : 275- 280: sleem Vrf--GvA agsaa K6P2_ECOLI : 279- 284: mvrfg Vaa--GsA atlnq KDGK_ECOLI : 225- 231: agvke VvvkrG-A dsclv KDGK_ECOLI : 226- 231: gvkev Vvkr-G-A dsclv KDGK_ECOLI : 227- 231: vkevv Vkr--G-A dsclv KDGK_ECOLI : 273- 280: agyla VrltgGsA edaak KDGK_ECOLI : 294- 300: ltast ViqyrG-A iipre KDGK_ERWCH : 226- 232: agvme VvikrG-A daclv KDGK_ERWCH : 227- 232: gvmev Vikr-G-A daclv KDGK_ERWCH : 237- 243: adacl Vsiq-GeA llevp KDGK_ERWCH : 274- 281: agyls VrlngGsA qdaak KDGK_ERWCH : 295- 301: ltast ViqyrG-A iirwk KDGK_HAEIN : 293- 299: riagi ViqhkG-A iidkv LACC_LACLA : 161- 167: egvav VldcsG-A pletv LACC_STAAU : 221- 225: iewii Vsl--G-A qgafa LACC_STRMU : 161- 168: hqvpi VldcsGqA llevl LACC_STRMU : 172- 176: qalle Vln--G-A akptv LACC_STRMU : 172- 177: qalle Vln--GaA kptvi RBSK_BACSU : 36- 42: tsfqt VpggkG-A nqava RBSK_BACSU : 107- 112: gdnsi Vvvk-G-A nddit RBSK_BACSU : 108- 112: dnsiv Vvk--G-A nddit RBSK_BACSU : 235- 240: fpvep Vdtt-G-A gdtfn RBSK_BACSU : 273- 278: aasls Vcsf-G-A qggmp RBSK_ECOLI : 286- 291: aaaia Vtrk-G-A qpsvp RBSK_HAEIN : 109- 114: sensi Vlas-G-A nshls RBSK_HAEIN : 218- 224: kgiet VmitlG-A kgvfv RBSK_HAEIN : 284- 289: aaais Vtkk-G-A qssip RBSK_YEAST : 275- 281: iqnvs VvdttG-A gdtfl RBSK_YEAST : 276- 281: qnvsv Vdtt-G-A gdtfl SCRK_ECOLI : 5- 11: msak Vwvl-GdA vvdll SCRK_ECOLI : 34- 39: gapan Vav--GiA rlggt SCRK_ECOLI : 218- 222: iamll Vtk--G-A egvvv SCRK_ECOLI : 244- 249: msvnc Vdst-G-A gdafv SCRK_KLEPN : 34- 39: gapan Vav--GvA rlggd SCRK_KLEPN : 218- 223: ptlll Vtq--GkA gvqaa SCRK_KLEPN : 244- 249: rpvva Vdtt-G-A gdafv SCRK_RHILT : 87- 94: stiaf VklvnGqA tyafy SCRK_RHILT : 214- 220: hgakl VvitkG-A egasg SCRK_RHILT : 215- 220: gaklv Vitk-G-A egasg SCRK_RHILT : 241- 247: servt VvdtvG-A gdtfd SCRK_RHILT : 242- 247: ervtv Vdtv-G-A gdtfd SCRK_SALTH : 132- 137: pelll Vtr--GkA gvlaa SCRK_SALTH : 158- 163: rpvas Vdtt-G-A gdafv SCRK_SALTY : 5- 11: mnak Vwvl-GdA vvdll SCRK_SALTY : 34- 39: gapan Vav--GvA rlggn SCRK_SALTY : 218- 223: pelll Vtr--GkA gvlaa SCRK_SALTY : 244- 249: rpvas Vdtt-G-A gdafv SCRK_SOLTU : 162- 168: lkame VakeaG-A llsyd SCRK_SOLTU : 251- 256: fhvkt Vdtt-G-A gdsfv SCRK_VIBAL : 4- 10: mnq Vwvt-GdA vvdli SCRK_VIBAL : 214- 220: mnial VlvtqG-A kgvwr SCRK_VIBAL : 216- 220: ialvl Vtq--G-A kgvwr YEIC_ECOLI : 7- 13: rekdy Vvii-GsA nidva YEIC_ECOLI : 8- 13: ekdyv Vii--GsA nidva YEIC_ECOLI : 248- 254: piktn VinvtG-A gdamm YEIC_ECOLI : 251- 257: tnvin Vtga-GdA mmagl YEII_ECOLI : 302- 307: pahtt Vdsf-G-A ddgfm YHFQ_ECOLI : 182- 186: kmkai Var--G-A gtviv YHFQ_ECOLI : 216- 222: pepvt VidtmG-A gdsfi YIHV_ECOLI : 38- 43: rnyte Vgg--GpA ataav YIHV_ECOLI : 139- 145: vvlad VrwhdG-A kkaft YIHV_ECOLI : 211- 218: ltngh VyvtqGsA gcdwl YIHV_ECOLI : 213- 218: nghvy Vtq--GsA gcdwl YIHV_ECOLI : 238- 244: afkvd VvdttG-A gdvfh YIHV_ECOLI : 239- 244: fkvdv Vdtt-G-A gdvfh YIHV_ECOLI : 247- 251: tgagd Vfh--G-A laval YIHV_ECOLI : 266- 273: dlaes VrfasGvA alkct YXDC_BACSU : 14- 19: kafdi Vai--GrA cidln YXDC_BACSU : 263- 269: ayktk VlktfG-A gdsya F 6: 10.9909 51( 28) G-x(3)-[ANV]-x-A Occurences: 51(28) INGK_ECOLI : 228- 234: vvltl GtkfViA enpqw K1PF_ECOLI : 40- 46: glhaa GkgiNvA kvlkd K1PF_ECOLI : 228- 234: slgae GalwVnA sgewi K1PF_HAEIN : 39- 45: glfpa GkgiNvA kvlkd K1PF_RHOCA : 40- 46: ridag GkgvNvA sflah K1PF_RHOCA : 236- 242: avlvr GaeaVlA ippat K1PF_XANCP : 40- 46: rndag GkgiNvA aclad K1PF_XANCP : 304- 310: ritpe GvrdAaA avvig K6P2_ECOLI : 38- 44: rcsnp GggiNvA raiah K6P2_ECOLI : 40- 46: snpgg GinvArA iahlg K6P2_ECOLI : 170- 176: tvlgq GlsaAlA ignie K6P2_ECOLI : 254- 260: stvga GdrlVgA mtlkl KDGK_ECOLI : 242- 248: siage GlvdVpA vklpk KDGK_ERWCH : 29- 35: irgfg GdtlNtA vyisr KDGK_HAEIN : 28- 34: wqsyg GdtlNsA tylsr LACC_LACLA : 224- 230: ivvsl GrngAfA khgdv LACC_STAAU : 224- 230: iivsl GaqgAfA khnht LACC_STRMU : 224- 230: iivsl GsqgAfA khgqt LACC_STRMU : 259- 265: dstva GitsAlA agasd RBSK_BACSU : 39- 45: qtvpg GkgaNqA vaaar RBSK_BACSU : 41- 47: vpggk GanqAvA aarlg RBSK_BACSU : 241- 247: dttga GdtfNaA faval RBSK_ECOLI : 42- 48: qvafg GkgaNqA vaagr RBSK_ECOLI : 44- 50: afggk GanqAvA agrsg RBSK_ECOLI : 225- 231: vlitl GsrgVwA svnge RBSK_ECOLI : 254- 260: dtiaa GdtfNgA lital RBSK_HAEIN : 40- 46: qiayg GkgaNqA vaaar RBSK_HAEIN : 42- 48: ayggk GanqAvA aarlg RBSK_YEAST : 38- 44: ethag GkglNqA aaigk RBSK_YEAST : 40- 46: haggk GlnqAaA igklk SCRK_ECOLI : 29- 35: lpcpg GapaNvA vgiar SCRK_ECOLI : 284- 290: laqrc GalaVtA qrgnd SCRK_KLEPN : 29- 35: lqcpg GapaNvA vgvar SCRK_KLEPN : 221- 227: llvtq GkagVqA alrgq SCRK_KLEPN : 265- 271: glaah GipdNlA alapd SCRK_RHILT : 30- 36: apyag GaifNtA ialgr SCRK_RHILT : 197- 203: wfglq GdhdAlA ahwln SCRK_SALTH : 135- 141: llvtr GkagVlA afqqk SCRK_SALTY : 29- 35: lqcpg GapaNvA vgvar SCRK_SALTY : 221- 227: llvtr GkagVlA afqqk SCRK_SOLTU : 29- 35: vptvs GvslAeA pgflk SCRK_SOLTU : 44- 50: lkapg GapaNvA iavtr SCRK_SOLTU : 94- 100: infdk GartAlA fvtlr SCRK_SOLTU : 257- 263: dttga GdsfVgA lltki SCRK_VIBAL : 28- 34: lkcpg GapaNvA vaiar YEIC_ECOLI : 41- 47: kftpg GvgrNiA qnlal YEII_ECOLI : 94- 100: hcsag GvgrNiA hnlal YHFQ_ECOLI : 25- 31: kafsg GnavNvA vyctr YIHV_ECOLI : 40- 46: ytevg GgpaAtA avaaa YXDC_BACSU : 44- 50: skyvg GspaNiA igsak YXDC_BACSU : 270- 276: ktfga GdsyAsA fiygl G 7: 10.5333 70( 28) A-x(3)-[AGTV]-x-L Occurences: 70(28) INGK_ECOLI : 274- 280: lasdk AldwVdL vlcta K1PF_ECOLI : 278- 284: htlrl AtavAaL avsqs K1PF_HAEIN : 159- 165: nqlhq AgvkVvL dssna K1PF_HAEIN : 170- 176: ldssn AaltAgL kakpw K1PF_RHOCA : 113- 119: nfpgi AagpAdL davaa K1PF_RHOCA : 123- 129: dldav AatlTeL laqgl K1PF_RHOCA : 149- 155: pagig AeayAeL aalar K1PF_RHOCA : 191- 197: vkpnv AelgAhL grtlt K1PF_RHOCA : 215- 221: aardl AasgVgL vavsm K1PF_RHOCA : 282- 288: arlat AfslGaL geigp K1PF_XANCP : 123- 129: hlqgv AdhlApL lragl K1PF_XANCP : 132- 138: apllr AglpVvL sgslp K1PF_XANCP : 264- 270: gdamv AglaAaL lddat K6P2_ECOLI : 44- 50: gginv AraiAhL ggsat K6P2_ECOLI : 161- 167: knkgs AassTvL gqgls K6P2_ECOLI : 281- 287: rfgva AgsaAtL nqgtr KDGK_ECOLI : 283- 289: gsaed AakrGhL tastv KDGK_ERWCH : 148- 154: nqasr ArllTvL racra KDGK_ERWCH : 284- 290: gsaqd AakrGhL tastv KDGK_HAEIN : 119- 125: qhpdf AkviAeL qqvdv LACC_LACLA : 167- 173: ldcsg ApleTvL kssak LACC_LACLA : 277- 283: dllkh AmtlGmL naqet LACC_STAAU : 167- 173: ldcsg AtlqTvL enpyk LACC_STAAU : 277- 283: dllkk AntlGmL naqea LACC_STRMU : 277- 283: kllkk AntlGmL naqek RBSK_BACSU : 45- 51: kganq AvaaArL gaqvf RBSK_BACSU : 201- 207: iseal AlypAkL fiteg RBSK_BACSU : 246- 252: gdtfn AafaVaL aegkd RBSK_BACSU : 265- 271: aalrf AnraAsL svcsf RBSK_ECOLI : 4- 10: mqn AgslVvL gsina RBSK_ECOLI : 114- 120: vigih AganAaL spalv RBSK_ECOLI : 133- 139: qreri AnasAlL mqles RBSK_ECOLI : 260- 266: dtfng AlitAlL eekpl RBSK_HAEIN : 46- 52: kganq AvaaArL gakva RBSK_YEAST : 44- 50: kglnq AaaiGkL knpss SCRK_ECOLI : 35- 41: apanv AvgiArL ggtsg SCRK_ECOLI : 252- 258: tgagd AfvaGlL tglss SCRK_ECOLI : 255- 261: gdafv AgllTgL sstgl SCRK_ECOLI : 280- 286: riidl AqrcGaL avtaq SCRK_KLEPN : 35- 41: apanv AvgvArL ggdsg SCRK_KLEPN : 223- 229: vtqgk AgvqAaL rgqvs SCRK_KLEPN : 252- 258: tgagd AfvaGlL aglaa SCRK_KLEPN : 255- 261: gdafv AgllAgL aahgi SCRK_KLEPN : 280- 286: pdlal AqtcGaL attak SCRK_RHILT : 36- 42: aifnt AialGrL gipta SCRK_RHILT : 253- 259: gdtfd AgilAsL kmdnl SCRK_SALTH : 82- 88: lwqdq AlllAcL dralh SCRK_SALTH : 166- 172: tgagd AfvaGlL aslaa SCRK_SALTH : 169- 175: gdafv AgllAsL aangm SCRK_SALTH : 194- 200: ptltl AqtcGaL attak SCRK_SALTY : 35- 41: apanv AvgvArL ggnsg SCRK_SALTY : 168- 174: lwqdq AlllAcL dralh SCRK_SALTY : 252- 258: tgagd AfvaGlL aslaa SCRK_SALTY : 255- 261: gdafv AgllAsL aangm SCRK_SALTY : 280- 286: ptltl AqtcGaL attak SCRK_SOLTU : 33- 39: sgvsl AeapGfL kapgg SCRK_SOLTU : 50- 56: apanv AiavTrL ggksa SCRK_SOLTU : 98- 104: kgart AlafVtL radge SCRK_SOLTU : 163- 169: kamev AkeaGaL lsydp SCRK_VIBAL : 34- 40: apanv AvaiArL sgksa SCRK_VIBAL : 250- 256: tgagd AfvgGlL aclsr SCRK_VIBAL : 278- 284: saiqw AngcGaL attqk YEIC_ECOLI : 47- 53: vgrni AqnlAlL gnkaw YEII_ECOLI : 100- 106: vgrni AhnlAlL grdvh YEII_ECOLI : 163- 169: dqtvl AindThL leqlt YHFQ_ECOLI : 78- 84: khgvt AqtqVeL hdndr YIHV_ECOLI : 47- 53: paata AvaaArL gaqvd YIHV_ECOLI : 155- 161: tlarq AgvmTvL dgdit YIHV_ECOLI : 269- 275: esvrf AsgvAaL kctrp YXDC_BACSU : 50- 56: spani AigsAkL glkag H 8: 10.5102 97( 28) G-x(3,5)-A-x(0,2)-L Occurences: 97(28) INGK_ECOLI : 355- 361: imntn Gagdg-A--L aalpd INGK_ECOLI : 357- 364: ntnga GdgalaA--L pddit INGK_ECOLI : 357- 364: ntnga Gdgal-Aa-L pddit INGK_ECOLI : 359- 364: ngagd Gala--A--L pddit K1PF_ECOLI : 40- 49: glhaa GkginvAkvL kdlgi K1PF_ECOLI : 42- 49: haagk Ginv--AkvL kdlgi K1PF_ECOLI : 176- 183: ealva Glka--ApwL vkpnr K1PF_ECOLI : 225- 230: vvisl Gaeg--A--L wvnas K1PF_HAEIN : 39- 48: glfpa GkginvAkvL kdlgv K1PF_HAEIN : 41- 48: fpagk Ginv--AkvL kdlgv K1PF_HAEIN : 254- 261: stvga Gdsmv-Ag-L iygfe K1PF_RHOCA : 40- 49: ridag GkgvnvAsfL ahvgh K1PF_RHOCA : 42- 49: daggk Gvnv--AsfL ahvgh K1PF_RHOCA : 63- 69: vtgll Gaena-A--L farhf K1PF_RHOCA : 63- 69: vtgll Gaen--Aa-L farhf K1PF_RHOCA : 111- 119: dlnfp GiaagpAd-L davaa K1PF_RHOCA : 133- 139: ellaq Gldwv-A--L cgslp K1PF_RHOCA : 148- 155: lpagi Gaeay-Ae-L aalar K1PF_RHOCA : 162- 168: alark Ggarv-A--L dtsgp K1PF_RHOCA : 163- 168: larkg Garv--A--L dtsgp K1PF_RHOCA : 172- 179: aldts GpalglA--L aarpd K1PF_RHOCA : 227- 233: vavsm Gagg--Av-L vrgae K1PF_RHOCA : 256- 263: stvga Gdamv-Ag-L ihaat K1PF_RHOCA : 262- 269: damva Gliha-At-L gldla K1PF_RHOCA : 262- 269: damva Glih--AatL gldla K1PF_XANCP : 40- 49: rndag GkginvAacL adwgs K1PF_XANCP : 42- 49: daggk Ginva-Ac-L adwgs K1PF_XANCP : 42- 49: daggk Ginv--AacL adwgs K1PF_XANCP : 53- 59: cladw Gsqva-A--L gvlgv K1PF_XANCP : 53- 59: cladw Gsqv--Aa-L gvlgv K1PF_XANCP : 68- 73: gvgna Gvfe--A--L frerg K1PF_XANCP : 111- 119: dinlp GlqlgqAh-L qgvad K1PF_XANCP : 121- 129: qahlq GvadhlAp-L lragl K1PF_XANCP : 121- 130: qahlq GvadhlAplL raglp K1PF_XANCP : 140- 146: pvvls Gslp--Ag-L pedsw K1PF_XANCP : 205- 210: tghpl Gdha--A--L taaah K1PF_XANCP : 230- 235: vvism Gteg--A--L fvqrd K1PF_XANCP : 259- 266: ssvga Gdamv-Ag-L aaall K1PF_XANCP : 265- 270: damva Glaa--A--L lddat K1PF_XANCP : 265- 271: damva Glaa--Al-L ddate K6P2_ECOLI : 168- 175: sstvl GqglsaA--L aigni K6P2_ECOLI : 168- 175: sstvl Gqgls-Aa-L aigni K6P2_ECOLI : 170- 175: tvlgq Glsa--A--L aigni K6P2_ECOLI : 225- 230: vvvsl Gpqg--A--L gvdse K6P2_ECOLI : 254- 263: stvga GdrlvgAmtL klaen K6P2_ECOLI : 278- 287: emvrf GvaagsAatL nqgtr KDGK_ECOLI : 135- 141: ylyls Gisl--Ai-L sptsr KDGK_ECOLI : 242- 251: siage GlvdvpAvkL pkekv KDGK_ECOLI : 263- 271: dttaa Gdsfs-AgyL avrlt KDGK_ERWCH : 136- 142: yiyls Gisl--Ai-L nqasr KDGK_ERWCH : 264- 272: dttaa Gdsfs-AgyL svrln KDGK_HAEIN : 28- 37: wqsyg GdtlnsAtyL srvss KDGK_HAEIN : 135- 141: viyls Gisl--Ai-L pkndr KDGK_HAEIN : 262- 270: dttsa Gdsfn-AgfL ngylr LACC_LACLA : 259- 264: dstva Gias--A--L nskks LACC_STAAU : 64- 71: iggel Gqfi--AkkL dhadi LACC_STAAU : 259- 265: dstva Gits--Ai-L nhend LACC_STRMU : 50- 58: vlsql Gddvl-AsgL lggkl LACC_STRMU : 64- 71: lggkl Gefle-Ae-L dksai LACC_STRMU : 259- 264: dstva Gits--A--L aagas RBSK_BACSU : 255- 262: valae GkdieaA--L rfanr RBSK_BACSU : 255- 262: valae Gkdie-Aa-L rfanr RBSK_ECOLI : 92- 99: vsvik GestgvA--L ifvng RBSK_ECOLI : 115- 120: igiha Gana--A--L spalv RBSK_ECOLI : 254- 261: dtiaa GdtfngA--L itall RBSK_ECOLI : 259- 265: gdtfn Galit-A--L leekp RBSK_ECOLI : 259- 266: gdtfn Galit-Al-L eekpl RBSK_HAEIN : 257- 263: gdtfn Ggfvt-A--L leeks RBSK_HAEIN : 257- 264: gdtfn Ggfvt-Al-L eeksf RBSK_HAEIN : 258- 263: dtfng Gfvt--A--L leeks RBSK_HAEIN : 258- 264: dtfng Gfvt--Al-L eeksf RBSK_YEAST : 93- 102: vgtye GintgtAtiL ieeka SCRK_ECOLI : 52- 59: figrv GddpfgA--L mqrtl SCRK_ECOLI : 250- 257: dstga Gdafv-Ag-L ltgls SCRK_ECOLI : 250- 258: dstga Gdafv-AglL tglss SCRK_KLEPN : 221- 229: llvtq GkagvqAa-L rgqvs SCRK_KLEPN : 224- 229: tqgka Gvqa--A--L rgqvs SCRK_KLEPN : 250- 257: dttga Gdafv-Ag-L lagla SCRK_KLEPN : 250- 258: dttga Gdafv-AglL aglaa SCRK_KLEPN : 265- 273: glaah GipdnlAa-L apdla SCRK_KLEPN : 292- 297: attak Gamt--A--L pykdd SCRK_RHILT : 30- 39: apyag GaifntAiaL grlgi SCRK_RHILT : 105- 113: degta GrmittAd-L pdlgd SCRK_RHILT : 117- 123: dlpdl Gddce-A--L hfgai SCRK_RHILT : 136- 142: ipspc Getye-A--L ldrea SCRK_RHILT : 136- 143: ipspc Getye-Al-L dreaa SCRK_RHILT : 197- 202: wfglq Gdhd--A--L aahwl SCRK_RHILT : 248- 256: dtvga Gdtfd-AgiL aslkm SCRK_SALTH : 164- 171: dttga Gdafv-Ag-L lasla SCRK_SALTH : 164- 172: dttga Gdafv-AglL aslaa SCRK_SALTH : 206- 211: attak Gamt--A--L pyqrd SCRK_SALTY : 250- 257: dttga Gdafv-Ag-L lasla SCRK_SALTY : 250- 258: dttga Gdafv-AglL aslaa SCRK_SALTY : 292- 297: attak Gamt--A--L pyqrd SCRK_SOLTU : 72- 79: gddef Ghml--AgiL ktngv SCRK_SOLTU : 94- 99: infdk Gart--A--L afvtl SCRK_SOLTU : 257- 264: dttga GdsfvgA--L ltkiv SCRK_SOLTU : 257- 265: dttga GdsfvgAl-L tkivd SCRK_SOLTU : 300- 305: tttkk Gaip--A--L ptese SCRK_VIBAL : 253- 259: gdafv Ggll--Ac-L srhad SCRK_VIBAL : 290- 295: attqk Gamt--A--L ptqte YEIC_ECOLI : 41- 50: kftpg GvgrniAqnL allgn YEIC_ECOLI : 43- 50: tpggv Grni--AqnL allgn YEIC_ECOLI : 255- 262: nvtga Gdamm-Ag-L ascwv YEIC_ECOLI : 281- 287: vrfaq Gcssm-A--L sceyt YEII_ECOLI : 94- 103: hcsag GvgrniAhnL allgr YEII_ECOLI : 96- 103: saggv Grni--AhnL allgr YHFQ_ECOLI : 97- 104: gdyte GvmadfA--L seedy YHFQ_ECOLI : 223- 231: dtmga Gdsfi-AgfL cgwsa YIHV_ECOLI : 69- 76: gdddt Gnsll-Ae-L eswgv YIHV_ECOLI : 144- 151: vrwhd Gakk--AftL arqag YIHV_ECOLI : 192- 200: larlt Gvkem-AsaL kqaqt YIHV_ECOLI : 245- 252: dttga GdvfhgA--L avala YIHV_ECOLI : 250- 256: gdvfh Galav-A--L atsgd YXDC_BACSU : 284- 291: yglvs GkdietA--L kygsa I 9: 10.5102 82( 28) G-x(1,3)-A-x(1,3)-L Occurences: 82(28) INGK_ECOLI : 59- 66: fiery Gls-AghsL viedd INGK_ECOLI : 123- 130: sniei Gsy-AyryL cntss INGK_ECOLI : 186- 192: edvia Gas-Alv-L tsylv INGK_ECOLI : 357- 364: ntnga Gdg-AlaaL pddit INGK_ECOLI : 359- 364: ngagd Gal-Aa--L pddit K1PF_ECOLI : 42- 49: haagk GinvAkv-L kdlgi K1PF_ECOLI : 176- 183: ealva GlkaApw-L vkpnr K1PF_ECOLI : 176- 183: ealva Glk-AapwL vkpnr K1PF_HAEIN : 41- 48: fpagk GinvAkv-L kdlgv K1PF_HAEIN : 175- 182: aalta Glk-AkpwL vkpnh K1PF_RHOCA : 42- 49: daggk GvnvAsf-L ahvgh K1PF_RHOCA : 53- 61: flahv GhgvAvtgL lgaen K1PF_RHOCA : 55- 61: ahvgh Gv--AvtgL lgaen K1PF_RHOCA : 63- 69: vtgll GaenAa--L farhf K1PF_RHOCA : 78- 86: hfaat GlvdAcqrL pgatr K1PF_RHOCA : 115- 119: pgiaa Gp--Ad--L davaa K1PF_RHOCA : 148- 155: lpagi Gae-AyaeL aalar K1PF_RHOCA : 162- 168: alark Gg--ArvaL dtsgp K1PF_RHOCA : 172- 177: aldts Gp--Alg-L alaar K1PF_RHOCA : 227- 233: vavsm GaggAv--L vrgae K1PF_RHOCA : 229- 233: vsmga Gg--Av--L vrgae K1PF_RHOCA : 236- 241: avlvr Gae-Av--L aippa K1PF_RHOCA : 262- 269: damva GlihAat-L gldla K1PF_XANCP : 42- 49: daggk GinvAac-L adwgs K1PF_XANCP : 53- 59: cladw GsqvAa--L gvlgv K1PF_XANCP : 115- 119: pglql Gq--Ah--L qgvad K1PF_XANCP : 121- 126: qahlq Gv--Adh-L apllr K1PF_XANCP : 140- 146: pvvls GslpAg--L pedsw K1PF_XANCP : 205- 210: tghpl Gdh-Aa--L taaah K1PF_XANCP : 265- 270: damva Gla-Aa--L lddat K1PF_XANCP : 265- 271: damva GlaaAl--L ddate K1PF_XANCP : 265- 270: damva Gl--Aaa-L lddat K1PF_XANCP : 265- 271: damva Gla-Aal-L ddate K1PF_XANCP : 265- 271: damva Gl--AaalL ddate K6P2_ECOLI : 170- 175: tvlgq Gls-Aa--L aigni K6P2_ECOLI : 282- 287: fgvaa Gsa-At--L nqgtr K6P2_ECOLI : 282- 287: fgvaa Gs--Aat-L nqgtr KDGK_ECOLI : 135- 141: ylyls GislAi--L sptsr KDGK_ECOLI : 269- 275: dsfsa Gyl-Avr-L tggsa KDGK_ERWCH : 136- 142: yiyls GislAi--L nqasr KDGK_ERWCH : 231- 236: vvikr Gad-Ac--L vsiqg KDGK_ERWCH : 241- 245: lvsiq Ge--Al--L evpai KDGK_HAEIN : 135- 141: viyls GislAi--L pkndr LACC_LACLA : 157- 162: lasde Gv--Avv-L dcsga LACC_LACLA : 259- 264: dstva Gi--Asa-L nskks LACC_STAAU : 64- 71: iggel GqfiAkk-L dhadi LACC_STAAU : 259- 265: dstva GitsAi--L nhend LACC_STRMU : 166- 170: vldcs Gq--Al--L evlng LACC_STRMU : 281- 289: kantl GmlnAqekL tghvn RBSK_BACSU : 67- 71: gddhy Gt--Ai--L nnlka RBSK_BACSU : 93- 99: thtes Gt--AhivL aegdn RBSK_ECOLI : 11- 19: slvvl GsinAdhiL nlqsf RBSK_ECOLI : 115- 120: igiha Gan-Aa--L spalv RBSK_HAEIN : 258- 264: dtfng GfvtAl--L eeksf RBSK_YEAST : 97- 102: egint Gt--Ati-L ieeka SCRK_ECOLI : 9- 15: kvwvl Gd--AvvdL lpesd SCRK_ECOLI : 37- 41: anvav Gi--Ar--L ggtsg SCRK_KLEPN : 9- 15: kiwvl Gd--AvvdL lpdge SCRK_KLEPN : 37- 41: anvav Gv--Ar--L ggdsg SCRK_KLEPN : 203- 207: ddivs Gi--Ar--L narfq SCRK_KLEPN : 224- 229: tqgka Gvq-Aa--L rgqvs SCRK_KLEPN : 256- 261: dafva Gll-Ag--L aahgi SCRK_RHILT : 254- 259: dtfda Gil-As--L kmdnl SCRK_SALTH : 135- 140: llvtr Gk--Agv-L aafqq SCRK_SALTH : 170- 175: dafva Gll-As--L aangm SCRK_SALTY : 9- 15: kvwvl Gd--AvvdL lpese SCRK_SALTY : 37- 41: anvav Gv--Ar--L ggnsg SCRK_SALTY : 221- 226: llvtr Gk--Agv-L aafqq SCRK_SALTY : 256- 261: dafva Gll-As--L aangm SCRK_SOLTU : 72- 79: gddef GhmlAgi-L ktngv SCRK_VIBAL : 8- 14: qvwvt Gd--AvvdL ipese SCRK_VIBAL : 253- 259: gdafv GgllAc--L srhad SCRK_VIBAL : 254- 259: dafvg Gll-Ac--L srhad YEIC_ECOLI : 43- 50: tpggv GrniAqn-L allgn YEIC_ECOLI : 54- 59: nlall Gnk-Aw--L lsavg YEIC_ECOLI : 54- 60: nlall Gnk-Awl-L savgs YEII_ECOLI : 96- 103: saggv GrniAhn-L allgr YEII_ECOLI : 189- 197: llrha GvvlAdcnL taeal YEII_ECOLI : 310- 315: fgadd Gfm-Ag--L vysfl YHFQ_ECOLI : 97- 104: gdyte Gvm-AdfaL seedy YHFQ_ECOLI : 233- 240: agflc Gws-AgmtL pqaia YIHV_ECOLI : 144- 151: vrwhd GakkAft-L arqag YIHV_ECOLI : 186- 190: afsep Gl--Ar--L tgvke YIHV_ECOLI : 250- 256: gdvfh Gal-Ava-L atsgd YIHV_ECOLI : 271- 275: vrfas Gv--Aa--L kctrp YXDC_BACSU : 17- 23: divai Gr--AcidL navey YXDC_BACSU : 52- 56: aniai Gs--Ak--L glkag YXDC_BACSU : 52- 58: aniai Gs--AklgL kagfi YXDC_BACSU : 95- 100: ivdqd Ghk-Ag--L aftei YXDC_BACSU : 229- 234: vnhlf Ghs-Ad--L vvikh J 10: 10.5102 84( 28) V-x(3,5)-G-x(1,3)-G Occurences: 84(28) INGK_ECOLI : 281- 289: dwvdl Vlcta-Gpi-G lymag K1PF_ECOLI : 56- 63: dlgid Vtvg--Gfl-G kdnqd K1PF_ECOLI : 220- 228: qgiah Vvisl-Gae-G alwvn K1PF_ECOLI : 221- 228: giahv Visl--Gae-G alwvn K1PF_ECOLI : 247- 254: ppsvd Vvstv-Ga--G dsmvg K1PF_ECOLI : 248- 254: psvdv Vstv--Ga--G dsmvg K1PF_HAEIN : 53- 62: lkdlg VnvavgGfl-G kdnsa K1PF_HAEIN : 53- 62: lkdlg Vnvav-GgflG kdnsa K1PF_HAEIN : 55- 62: dlgvn Vavg--Gfl-G kdnsa K1PF_HAEIN : 219- 227: egien Viism-Gak-G slwin K1PF_HAEIN : 247- 254: aqcen Vvstv-Ga--G dsmva K1PF_HAEIN : 248- 254: qcenv Vstv--Ga--G dsmva K1PF_HAEIN : 258- 268: agdsm VagliyGfekG lskte K1PF_RHOCA : 56- 63: hvghg Vavt--Gll-G aenaa K1PF_RHOCA : 166- 176: kggar ValdtsGpalG lalaa K1PF_RHOCA : 190- 198: ivkpn Vael--GahlG rtltg K1PF_RHOCA : 222- 229: sgvgl Vavsm-Ga--G gavlv K1PF_RHOCA : 222- 230: sgvgl Vavsm-Gag-G avlvr K1PF_XANCP : 34- 42: hrass VrndagGk--G invaa K1PF_XANCP : 34- 42: hrass Vrnda-Ggk-G invaa K1PF_XANCP : 56- 63: dwgsq Vaal--Gvl-G vgnag K1PF_XANCP : 61- 68: vaalg Vlgv--Gna-G vfeal K1PF_XANCP : 225- 233: rgiql Vvism-Gte-G alfvq K1PF_XANCP : 226- 233: giqlv Vism--Gte-G alfvq K6P2_ECOLI : 220- 228: gkakr Vvvsl-Gpq-G algvd K6P2_ECOLI : 221- 228: kakrv Vvsl--Gpq-G algvd K6P2_ECOLI : 222- 231: akrvv VslgpqGal-G vdsen KDGK_ECOLI : 236- 242: adscl Vsia--Ge--G lvdvp KDGK_ERWCH : 214- 222: lpvde VlkrthGa--G vmevv KDGK_HAEIN : 225- 233: igipk Vivkc-Gkn-G aifsd LACC_LACLA : 31- 39: nrvkd VsktagGk--G lnvtr LACC_LACLA : 31- 39: nrvkd Vskta-Ggk-G lnvtr LACC_LACLA : 53- 60: esgdk Vtat--Gfl-G gkige LACC_LACLA : 53- 61: esgdk Vtat--GflgG kigef LACC_LACLA : 220- 227: giewi Vvsl--Grn-G afakh LACC_LACLA : 246- 253: ipdip Vvnpv-Gs--G dstva LACC_LACLA : 247- 253: pdipv Vnpv--Gs--G dstva LACC_STAAU : 31- 39: nrvqe VsktagGk--G lnvtr LACC_STAAU : 31- 39: nrvqe Vskta-Ggk-G lnvtr LACC_STAAU : 53- 60: qvgep Vlas--Gfi-G gelgq LACC_STAAU : 53- 61: qvgep Vlas--GfigG elgqf LACC_STAAU : 246- 253: iptis Vlnpv-Gs--G dstva LACC_STRMU : 53- 60: qlgdd Vlas--Gll-G gklge LACC_STRMU : 53- 61: qlgdd Vlas--GllgG klgef LACC_STRMU : 246- 253: ipkia Vvnpv-Gs--G dstva LACC_STRMU : 247- 253: pkiav Vnpv--Gs--G dstva RBSK_BACSU : 55- 62: rlgaq Vfmv--Gkv-G ddhyg RBSK_BACSU : 235- 241: fpvep Vdtt--Ga--G dtfna RBSK_BACSU : 273- 280: aasls Vcsf--Gaq-G gmpdk RBSK_BACSU : 273- 281: aasls Vcsf--GaqgG mpdkk RBSK_ECOLI : 38- 44: gnhyq Vafg--Gk--G anqav RBSK_ECOLI : 87- 96: iditp Vsvik-GestG valif RBSK_ECOLI : 220- 228: kgirt Vlitl-Gsr-G vwasv RBSK_ECOLI : 229- 237: lgsrg VwasvnGe--G qrvpg RBSK_HAEIN : 218- 226: kgiet Vmitl-Gak-G vfvsr RBSK_YEAST : 59- 66: ssrys Vrmi--Gnv-G ndtfg RBSK_YEAST : 83- 93: lsdcg VdithvGtyeG intgt RBSK_YEAST : 88- 97: vdith Vgtye-GintG tatil RBSK_YEAST : 245- 253: kkrgi Vvmtl-Gsr-G vlfcs RBSK_YEAST : 246- 253: krgiv Vmtl--Gsr-G vlfcs RBSK_YEAST : 275- 282: iqnvs Vvdtt-Ga--G dtflg RBSK_YEAST : 276- 282: qnvsv Vdtt--Ga--G dtflg SCRK_ECOLI : 36- 46: panva VgiarlGgtsG figrv SCRK_ECOLI : 244- 250: msvnc Vdst--Ga--G dafva SCRK_KLEPN : 13- 21: lgdav VdllpdGe--G rllqc SCRK_KLEPN : 36- 46: panva VgvarlGgdsG figrv SCRK_KLEPN : 38- 46: nvavg Varlg-Gds-G figrv SCRK_KLEPN : 38- 46: nvavg Varl--GgdsG figrv SCRK_KLEPN : 242- 250: parpv VavdttGa--G dafva SCRK_KLEPN : 244- 250: rpvva Vdtt--Ga--G dafva SCRK_RHILT : 214- 222: hgakl Vvitk-Gae-G asgyt SCRK_RHILT : 215- 222: gaklv Vitk--Gae-G asgyt SCRK_RHILT : 241- 248: servt Vvdtv-Ga--G dtfda SCRK_RHILT : 242- 248: ervtv Vdtv--Ga--G dtfda SCRK_SALTH : 158- 164: rpvas Vdtt--Ga--G dafva SCRK_SALTY : 36- 46: panva VgvarlGgnsG figav SCRK_SALTY : 38- 46: nvavg Varlg-Gns-G figav SCRK_SALTY : 38- 46: nvavg Varl--GgnsG figav SCRK_SALTY : 244- 250: rpvas Vdtt--Ga--G dafva SCRK_SOLTU : 251- 257: fhvkt Vdtt--Ga--G dsfvg SCRK_VIBAL : 214- 222: mnial Vlvtq-Gak-G vwrvf YEIC_ECOLI : 221- 228: glnrl Vlsmg-Gd--G vyysd YEIC_ECOLI : 221- 228: glnrl Vlsm--Ggd-G vyysd YEIC_ECOLI : 248- 255: piktn Vinvt-Ga--G damma YEII_ECOLI : 302- 310: pahtt Vdsf--GaddG fmagl YHFQ_ECOLI : 32- 42: avnva VyctryGiqpG citwv YHFQ_ECOLI : 189- 197: rgagt Vivtl-Gen-G siawd YHFQ_ECOLI : 216- 223: pepvt Vidtm-Ga--G dsfia YIHV_ECOLI : 57- 64: rlgaq Vdfi--Grv-G dddtg YIHV_ECOLI : 211- 219: ltngh Vyvtq-Gsa-G cdwle YIHV_ECOLI : 238- 245: afkvd Vvdtt-Ga--G dvfhg YIHV_ECOLI : 239- 245: fkvdv Vdtt--Ga--G dvfhg YXDC_BACSU : 91- 99: ttqmi Vdqd--GhkaG lafte YXDC_BACSU : 235- 243: hsadl Vvikh-Gve-G syays YXDC_BACSU : 236- 243: sadlv Vikh--Gve-G syays YXDC_BACSU : 263- 270: ayktk Vlktf-Ga--G dsyas K 11: 10.5102 92( 28) V-x(0,2)-V-x(3,5)-G Occurences: 92(28) INGK_ECOLI : 221- 228: akkyn VpvVltl--G tkfvi INGK_ECOLI : 221- 228: akkyn Vp-Vvltl-G tkfvi INGK_ECOLI : 223- 228: kynvp V--Vltl--G tkfvi INGK_ECOLI : 278- 286: kaldw VdlVlcta-G pigly K1PF_ECOLI : 28- 35: ierge VnlVktt--G lhaag K1PF_ECOLI : 45- 53: gkgin VakVlkdl-G idvtv K1PF_ECOLI : 56- 63: dlgid Vt-Vggfl-G kdnqd K1PF_ECOLI : 220- 225: qgiah V--Visl--G aegal K1PF_ECOLI : 245- 252: akpps VdvVstv--G agdsm K1PF_ECOLI : 245- 252: akpps Vd-Vvstv-G agdsm K1PF_ECOLI : 245- 254: akpps VdvVstvgaG dsmvg K1PF_ECOLI : 247- 252: ppsvd V--Vstv--G agdsm K1PF_ECOLI : 247- 254: ppsvd V--VstvgaG dsmvg K1PF_HAEIN : 27- 34: iqlge VntVetl--G lfpag K1PF_HAEIN : 44- 52: gkgin VakVlkdl-G vnvav K1PF_HAEIN : 53- 59: lkdlg Vn-Vavg--G flgkd K1PF_HAEIN : 55- 62: dlgvn Va-Vggfl-G kdnsa K1PF_HAEIN : 247- 252: aqcen V--Vstv--G agdsm K1PF_HAEIN : 247- 254: aqcen V--VstvgaG dsmva K1PF_RHOCA : 56- 63: hvghg Va-Vtgll-G aenaa K1PF_RHOCA : 219- 227: laasg VglVavsm-G aggav K1PF_RHOCA : 222- 229: sgvgl Va-Vsmga-G gavlv K1PF_RHOCA : 222- 230: sgvgl Va-VsmgagG avlvr K1PF_XANCP : 61- 68: vaalg VlgVgna--G vfeal K1PF_XANCP : 225- 230: rgiql V--Vism--G tegal K6P2_ECOLI : 94- 100: rqnlh Vh-Veas--G eqyrf K6P2_ECOLI : 220- 225: gkakr V--Vvsl--G pqgal K6P2_ECOLI : 220- 228: gkakr Vv-VslgpqG algvd K6P2_ECOLI : 221- 228: kakrv V--VslgpqG algvd KDGK_ECOLI : 48- 55: paalt VhyVtal--G tdsfs KDGK_ECOLI : 222- 230: thnag VkeVvvkr-G adscl KDGK_ECOLI : 225- 230: agvke V--Vvkr--G adscl KDGK_ERWCH : 49- 56: pdald VhyVtal--G tdsfs KDGK_ERWCH : 211- 220: wgelp VdeVlkrthG agvme KDGK_ERWCH : 223- 231: thgag VmeVvikr-G adacl KDGK_ERWCH : 226- 231: agvme V--Vikr--G adacl KDGK_ERWCH : 257- 264: lpkek V--VdttaaG dsfsa KDGK_HAEIN : 48- 55: skeiq VhyVsal--G tdnls KDGK_HAEIN : 128- 135: aelqq Vd-Viyls-G islai KDGK_HAEIN : 225- 233: igipk Vi-VkcgknG aifsd KDGK_HAEIN : 255- 262: epiln V--VdttsaG dsfna LACC_LACLA : 28- 36: dtvnr VkdVskta-G gkgln LACC_LACLA : 28- 37: dtvnr VkdVsktagG kglnv LACC_LACLA : 42- 50: gkgln VtrVlyes-G dkvta LACC_LACLA : 130- 135: ikqse V--Vtis--G slpsg LACC_LACLA : 158- 166: asdeg VavVldcs-G aplet LACC_LACLA : 158- 166: asdeg Va-VvldcsG aplet LACC_LACLA : 160- 166: degva V--Vldcs-G aplet LACC_LACLA : 220- 227: giewi V--VslgrnG afakh LACC_LACLA : 246- 251: ipdip V--Vnpv--G sgdst LACC_LACLA : 246- 253: ipdip V--VnpvgsG dstva LACC_STAAU : 28- 36: ddvnr VqeVskta-G gkgln LACC_STAAU : 28- 37: ddvnr VqeVsktagG kglnv LACC_STAAU : 42- 50: gkgln VtrVlaqv-G epvla LACC_STAAU : 128- 135: qllek VeaVais--G slpkg LACC_STAAU : 158- 166: cqnkg Vp-VildcsG atlqt LACC_STRMU : 42- 50: gkgln VtrVlsql-G ddvla LACC_STRMU : 130- 135: lpkle V--Vais--G slpkg LACC_STRMU : 158- 166: ckqhq VpiVldcs-G qalle LACC_STRMU : 246- 251: ipkia V--Vnpv--G sgdst LACC_STRMU : 246- 253: ipkia V--VnpvgsG dstva RBSK_BACSU : 55- 62: rlgaq VfmVgkv--G ddhyg RBSK_BACSU : 58- 67: aqvfm VgkVgddhyG tailn RBSK_BACSU : 232- 239: ipsfp VepVdtt--G agdtf RBSK_BACSU : 232- 241: ipsfp VepVdttgaG dtfna RBSK_ECOLI : 245- 254: vpgfr VqaVdtiaaG dtfng RBSK_HAEIN : 227- 233: lgakg Vf-Vsrk--G ksrii RBSK_YEAST : 191- 197: lvdll V--Vneie-G lqive RBSK_YEAST : 245- 250: kkrgi V--Vmtl--G srgvl RBSK_YEAST : 273- 280: paiqn VsvVdtt--G agdtf RBSK_YEAST : 273- 280: paiqn Vs-Vvdtt-G agdtf RBSK_YEAST : 273- 282: paiqn VsvVdttgaG dtflg RBSK_YEAST : 275- 280: iqnvs V--Vdtt--G agdtf RBSK_YEAST : 275- 282: iqnvs V--VdttgaG dtflg SCRK_ECOLI : 34- 42: gapan Va-VgiarlG gtsgf SCRK_ECOLI : 85- 93: hrtst Vl-VdlndqG ersft SCRK_ECOLI : 225- 231: kgaeg Vv-Vcyr--G qvhhf SCRK_ECOLI : 225- 231: kgaeg V--Vvcyr-G qvhhf SCRK_ECOLI : 226- 231: gaegv V--Vcyr--G qvhhf SCRK_ECOLI : 241- 248: fagms VncVdst--G agdaf SCRK_ECOLI : 241- 250: fagms VncVdstgaG dafva SCRK_KLEPN : 12- 19: vlgda V--VdllpdG egrll SCRK_KLEPN : 34- 42: gapan Va-VgvarlG gdsgf SCRK_KLEPN : 36- 42: panva Vg-Varl--G gdsgf SCRK_KLEPN : 36- 43: panva Vg-Varlg-G dsgfi SCRK_KLEPN : 85- 93: qrtst Vv-VdldshG ertft SCRK_KLEPN : 86- 93: rtstv V--VdldshG ertft SCRK_KLEPN : 241- 248: fparp VvaVdtt--G agdaf SCRK_KLEPN : 241- 248: fparp V--VavdttG agdaf SCRK_KLEPN : 241- 250: fparp VvaVdttgaG dafva SCRK_KLEPN : 242- 248: parpv Va-Vdtt--G agdaf SCRK_KLEPN : 242- 250: parpv Va-VdttgaG dafva SCRK_RHILT : 214- 219: hgakl V--Vitk--G aegas SCRK_RHILT : 239- 246: vpser VtvVdtv--G agdtf SCRK_RHILT : 239- 246: vpser Vt-Vvdtv-G agdtf SCRK_RHILT : 239- 248: vpser VtvVdtvgaG dtfda SCRK_RHILT : 241- 246: servt V--Vdtv--G agdtf SCRK_RHILT : 241- 248: servt V--VdtvgaG dtfda SCRK_SALTH : 155- 162: fnarp VasVdtt--G agdaf SCRK_SALTH : 155- 164: fnarp VasVdttgaG dafva SCRK_SALTY : 34- 42: gapan Va-VgvarlG gnsgf SCRK_SALTY : 36- 42: panva Vg-Varl--G gnsgf SCRK_SALTY : 36- 43: panva Vg-Varlg-G nsgfi SCRK_SALTY : 85- 93: hrtst Vv-VdlddqG ertft SCRK_SALTY : 86- 93: rtstv V--VdlddqG ertft SCRK_SALTY : 241- 248: fnarp VasVdtt--G agdaf SCRK_SALTY : 241- 250: fnarp VasVdttgaG dafva SCRK_SOLTU : 248- 255: vggfh VktVdtt--G agdsf SCRK_SOLTU : 248- 257: vggfh VktVdttgaG dsfvg SCRK_VIBAL : 84- 92: qrtst Vv-VdlddqG ersft SCRK_VIBAL : 85- 92: rtstv V--VdlddqG ersft SCRK_VIBAL : 214- 222: mnial Vl-VtqgakG vwrvf YEIC_ECOLI : 248- 255: piktn VinVtga--G damma YEII_ECOLI : 216- 225: eipvf VdtVsefkaG kikhw YHFQ_ECOLI : 30- 38: gnavn Va-VyctryG iqpgc YHFQ_ECOLI : 189- 197: rgagt Vi-VtlgenG siawd YHFQ_ECOLI : 214- 221: qapep Vt-Vidtm-G agdsf YIHV_ECOLI : 211- 219: ltngh Vy-VtqgsaG cdwle YIHV_ECOLI : 236- 243: qpafk VdvVdtt--G agdvf YIHV_ECOLI : 236- 243: qpafk Vd-Vvdtt-G agdvf YIHV_ECOLI : 236- 245: qpafk VdvVdttgaG dvfhg YIHV_ECOLI : 238- 243: afkvd V--Vdtt--G agdvf YIHV_ECOLI : 238- 245: afkvd V--VdttgaG dvfhg YXDC_BACSU : 235- 240: hsadl V--Vikh--G vegsy L 12: 10.5102 79( 28) V-x(1,3)-L-x(1,3)-G Occurences: 79(28) INGK_ECOLI : 221- 228: akkyn VpvvLtl-G tkfvi INGK_ECOLI : 223- 228: kynvp Vv--Ltl-G tkfvi INGK_ECOLI : 278- 286: kaldw VdlvLctaG pigly K1PF_ECOLI : 45- 53: gkgin VakvLkdlG idvtv K1PF_ECOLI : 122- 130: dwerf VtdsLswlG qfdmv K1PF_ECOLI : 137- 144: fdmvc VsgsLps-G vspea K1PF_ECOLI : 220- 228: qgiah VvisLgaeG alwvn K1PF_ECOLI : 221- 228: giahv Vis-LgaeG alwvn K1PF_ECOLI : 258- 264: agdsm Vgg-Liy-G llmre K1PF_HAEIN : 44- 52: gkgin VakvLkdlG vnvav K1PF_HAEIN : 102- 109: etead Vtd-LnflG yqisp K1PF_HAEIN : 136- 143: ydiva VcgsLpr-G vspel K1PF_HAEIN : 258- 264: agdsm Vag-Liy-G fekgl K1PF_RHOCA : 45- 53: gkgvn VasfLahvG hgvav K1PF_RHOCA : 58- 63: ghgva Vtg-Ll--G aenaa K1PF_RHOCA : 104- 111: plqdq Vtd-LnfpG iaagp K1PF_RHOCA : 137- 141: qgldw Va--Lc--G slpag K1PF_RHOCA : 166- 172: kggar Va--LdtsG palgl K1PF_XANCP : 45- 53: gkgin VaacLadwG sqvaa K1PF_XANCP : 56- 63: dwgsq Vaa-LgvlG vgnag K1PF_XANCP : 136- 140: raglp Vv--Ls--G slpag K6P2_ECOLI : 220- 228: gkakr VvvsLgpqG algvd K6P2_ECOLI : 221- 228: kakrv Vvs-LgpqG algvd K6P2_ECOLI : 222- 228: akrvv Vs--LgpqG algvd KDGK_ECOLI : 273- 277: agyla Vr--Lt--G gsaed KDGK_ECOLI : 273- 278: agyla Vr--Ltg-G saeda KDGK_ERWCH : 274- 278: agyls Vr--Ln--G gsaqd KDGK_ERWCH : 274- 279: agyls Vr--Lng-G saqda KDGK_HAEIN : 130- 135: lqqvd Viy-Ls--G islai LACC_LACLA : 42- 50: gkgln VtrvLyesG dkvta LACC_LACLA : 158- 166: asdeg VavvLdcsG aplet LACC_LACLA : 160- 166: degva Vv--LdcsG aplet LACC_LACLA : 220- 227: giewi Vvs-LgrnG afakh LACC_LACLA : 221- 227: iewiv Vs--LgrnG afakh LACC_STAAU : 42- 50: gkgln VtrvLaqvG epvla LACC_STAAU : 158- 166: cqnkg VpviLdcsG atlqt LACC_STAAU : 160- 166: nkgvp Vi--LdcsG atlqt LACC_STAAU : 208- 215: slkqa VsqpLfe-G iewii LACC_STAAU : 221- 227: iewii Vs--LgaqG afakh LACC_STRMU : 42- 50: gkgln VtrvLsqlG ddvla LACC_STRMU : 158- 166: ckqhq VpivLdcsG qalle LACC_STRMU : 221- 227: idwii Vs--LgsqG afakh RBSK_BACSU : 250- 255: naafa Va--Lae-G kdiea RBSK_ECOLI : 220- 228: kgirt VlitLgsrG vwasv RBSK_HAEIN : 218- 226: kgiet VmitLgakG vfvsr RBSK_YEAST : 245- 253: kkrgi VvmtLgsrG vlfcs RBSK_YEAST : 246- 253: krgiv Vmt-LgsrG vlfcs RBSK_YEAST : 290- 296: flggl Vtq-Lyq-G etlsm SCRK_ECOLI : 85- 93: hrtst VlvdLndqG ersft SCRK_ECOLI : 87- 93: tstvl Vd--LndqG ersft SCRK_ECOLI : 254- 260: agdaf VaglLt--G lsstg SCRK_ECOLI : 254- 260: agdaf Vag-Llt-G lsstg SCRK_KLEPN : 12- 19: vlgda VvdlLpd-G egrll SCRK_KLEPN : 12- 19: vlgda Vvd-LlpdG egrll SCRK_KLEPN : 13- 19: lgdav Vdl-Lpd-G egrll SCRK_KLEPN : 13- 19: lgdav Vd--LlpdG egrll SCRK_KLEPN : 38- 43: nvavg Var-Lg--G dsgfi SCRK_KLEPN : 85- 93: qrtst VvvdLdshG ertft SCRK_KLEPN : 86- 93: rtstv Vvd-LdshG ertft SCRK_KLEPN : 87- 93: tstvv Vd--LdshG ertft SCRK_KLEPN : 225- 231: qgkag VqaaLr--G qvshf SCRK_KLEPN : 254- 260: agdaf VaglLa--G laahg SCRK_KLEPN : 254- 260: agdaf Vag-Lla-G laahg SCRK_RHILT : 87- 92: stiaf Vk--Lvn-G qatya SCRK_SALTH : 1- 7: Vd--LddqG ertft SCRK_SALTY : 38- 43: nvavg Var-Lg--G nsgfi SCRK_SALTY : 85- 93: hrtst VvvdLddqG ertft SCRK_SALTY : 86- 93: rtstv Vvd-LddqG ertft SCRK_SALTY : 87- 93: tstvv Vd--LddqG ertft SCRK_SOLTU : 53- 58: nvaia Vtr-Lg--G ksafv SCRK_SOLTU : 102- 108: talaf Vt--LradG erefm SCRK_SOLTU : 225- 231: lklll Vt--LgekG cnyyt SCRK_VIBAL : 84- 92: qrtst VvvdLddqG ersft SCRK_VIBAL : 85- 92: rtstv Vvd-LddqG ersft SCRK_VIBAL : 86- 92: tstvv Vd--LddqG ersft YEIC_ECOLI : 83- 91: qsgvy VdkcLivpG entss YEII_ECOLI : 110- 117: llgrd Vhl-LsviG ddfyg YEII_ECOLI : 140- 144: nvsgc Vr--Lh--G qstst YEII_ECOLI : 262- 269: drnta Vna-LhqqG vqqlf YEII_ECOLI : 316- 322: fmagl VysfLe--G ysfrd YHFQ_ECOLI : 189- 197: rgagt VivtLgenG siawd YHFQ_ECOLI : 191- 197: agtvi Vt--LgenG siawd YIHV_ECOLI : 157- 163: arqag VmtvLd--G ditpq YIHV_ECOLI : 254- 260: hgala Va--LatsG dlaes YXDC_BACSU : 224- 229: snees Vnh-Lf--G hsadl M 13: 8.3401 111( 28) G-A Occurences: 111(28) INGK_ECOLI : 186- 187: edvia GA salvl INGK_ECOLI : 311- 312: hpllp GA iaefn INGK_ECOLI : 355- 356: imntn GA gdgal INGK_ECOLI : 359- 360: ngagd GA laalp K1PF_ECOLI : 225- 226: vvisl GA egalw K1PF_ECOLI : 228- 229: slgae GA lwvna K1PF_ECOLI : 252- 253: vvstv GA gdsmv K1PF_HAEIN : 224- 225: viism GA kgslw K1PF_HAEIN : 252- 253: vvstv GA gdsmv K1PF_RHOCA : 63- 64: vtgll GA enaal K1PF_RHOCA : 88- 89: cqrlp GA trtnv K1PF_RHOCA : 148- 149: lpagi GA eayae K1PF_RHOCA : 163- 164: larkg GA rvald K1PF_RHOCA : 194- 195: nvael GA hlgrt K1PF_RHOCA : 227- 228: vavsm GA ggavl K1PF_RHOCA : 230- 231: smgag GA vlvrg K1PF_RHOCA : 236- 237: avlvr GA eavla K1PF_RHOCA : 254- 255: iastv GA gdamv K1PF_RHOCA : 286- 287: tafsl GA lgeig K1PF_XANCP : 26- 27: drlqp GA vhras K1PF_XANCP : 233- 234: smgte GA lfvqr K1PF_XANCP : 257- 258: qgssv GA gdamv K1PF_XANCP : 315- 316: aavvi GA vp K6P2_ECOLI : 62- 63: ifpag GA tgehl K6P2_ECOLI : 109- 110: rfvmp GA alned K6P2_ECOLI : 130- 131: leies GA ilvis K6P2_ECOLI : 228- 229: slgpq GA lgvds K6P2_ECOLI : 252- 253: sqstv GA gdrlv K6P2_ECOLI : 259- 260: gdrlv GA mtlkl KDGK_ECOLI : 19- 20: elsek GA dvkrg KDGK_ECOLI : 230- 231: vvvkr GA dsclv KDGK_ECOLI : 299- 300: viqyr GA iipre KDGK_ERWCH : 220- 221: lkrth GA gvmev KDGK_ERWCH : 231- 232: vvikr GA daclv KDGK_ERWCH : 300- 301: viqyr GA iirwk KDGK_HAEIN : 233- 234: kcgkn GA ifsdr KDGK_HAEIN : 298- 299: viqhk GA iidkv LACC_LACLA : 166- 167: vldcs GA pletv LACC_LACLA : 227- 228: slgrn GA fakhg LACC_STAAU : 166- 167: ildcs GA tlqtv LACC_STAAU : 224- 225: iivsl GA qgafa LACC_STAAU : 227- 228: slgaq GA fakhn LACC_STRMU : 175- 176: levln GA akptv LACC_STRMU : 227- 228: slgsq GA fakhg LACC_STRMU : 267- 268: salaa GA sdekl RBSK_BACSU : 41- 42: vpggk GA nqava RBSK_BACSU : 52- 53: aaarl GA qvfmv RBSK_BACSU : 111- 112: ivvvk GA nddit RBSK_BACSU : 239- 240: pvdtt GA gdtfn RBSK_BACSU : 277- 278: svcsf GA qggmp RBSK_ECOLI : 44- 45: afggk GA nqava RBSK_ECOLI : 55- 56: aagrs GA niafi RBSK_ECOLI : 115- 116: igiha GA naals RBSK_ECOLI : 259- 260: gdtfn GA lital RBSK_ECOLI : 290- 291: avtrk GA qpsvp RBSK_HAEIN : 42- 43: ayggk GA nqava RBSK_HAEIN : 53- 54: aaarl GA kvafi RBSK_HAEIN : 113- 114: ivlas GA nshls RBSK_HAEIN : 223- 224: vmitl GA kgvfv RBSK_HAEIN : 288- 289: svtkk GA qssip RBSK_YEAST : 118- 119: ilive GA nskti RBSK_YEAST : 280- 281: vvdtt GA gdtfl RBSK_YEAST : 318- 319: tiqrk GA aesmp SCRK_ECOLI : 29- 30: lpcpg GA panva SCRK_ECOLI : 57- 58: gddpf GA lmqrt SCRK_ECOLI : 221- 222: llvtk GA egvvv SCRK_ECOLI : 248- 249: cvdst GA gdafv SCRK_ECOLI : 284- 285: laqrc GA lavta SCRK_KLEPN : 29- 30: lqcpg GA panva SCRK_KLEPN : 248- 249: avdtt GA gdafv SCRK_KLEPN : 284- 285: laqtc GA latta SCRK_KLEPN : 292- 293: attak GA mtalp SCRK_RHILT : 30- 31: apyag GA ifnta SCRK_RHILT : 126- 127: ealhf GA islip SCRK_RHILT : 210- 211: hwlnh GA klvvi SCRK_RHILT : 219- 220: vvitk GA egasg SCRK_RHILT : 222- 223: tkgae GA sgytk SCRK_RHILT : 246- 247: vvdtv GA gdtfd SCRK_RHILT : 303- 304: rqstl GA rdwsl SCRK_SALTH : 162- 163: svdtt GA gdafv SCRK_SALTH : 198- 199: laqtc GA latta SCRK_SALTH : 206- 207: attak GA mtalp SCRK_SALTY : 29- 30: lqcpg GA panva SCRK_SALTY : 49- 50: nsgfi GA vggdp SCRK_SALTY : 248- 249: svdtt GA gdafv SCRK_SALTY : 284- 285: laqtc GA latta SCRK_SALTY : 292- 293: attak GA mtalp SCRK_SOLTU : 44- 45: lkapg GA panva SCRK_SOLTU : 94- 95: infdk GA rtala SCRK_SOLTU : 167- 168: vakea GA llsyd SCRK_SOLTU : 255- 256: tvdtt GA gdsfv SCRK_SOLTU : 262- 263: gdsfv GA lltki SCRK_SOLTU : 292- 293: fscac GA itttk SCRK_SOLTU : 300- 301: tttkk GA ipalp SCRK_SOLTU : 318- 319: tllkg GA SCRK_VIBAL : 28- 29: lkcpg GA panva SCRK_VIBAL : 219- 220: vlvtq GA kgvwr SCRK_VIBAL : 246- 247: pidtt GA gdafv SCRK_VIBAL : 282- 283: wangc GA lattq SCRK_VIBAL : 290- 291: attqk GA mtalp YEIC_ECOLI : 253- 254: vinvt GA gdamm YEII_ECOLI : 306- 307: tvdsf GA ddgfm YHFQ_ECOLI : 185- 186: aivar GA gtviv YHFQ_ECOLI : 203- 204: siawd GA qfwrq YHFQ_ECOLI : 221- 222: vidtm GA gdsfi YHFQ_ECOLI : 259- 260: tiqyh GA w YIHV_ECOLI : 54- 55: aaarl GA qvdfi YIHV_ECOLI : 144- 145: vrwhd GA kkaft YIHV_ECOLI : 243- 244: vvdtt GA gdvfh YIHV_ECOLI : 250- 251: gdvfh GA laval YXDC_BACSU : 268- 269: vlktf GA gdsya N 14: 8.3401 116( 28) G-x(3)-A Occurences: 116(28) INGK_ECOLI : 289- 293: tagpi GlymA gfted INGK_ECOLI : 359- 363: ngagd GalaA lpddi K1PF_ECOLI : 35- 39: lvktt GlhaA gkgin K1PF_ECOLI : 42- 46: haagk GinvA kvlkd K1PF_ECOLI : 176- 180: ealva GlkaA pwlvk K1PF_ECOLI : 225- 229: vvisl GaegA lwvna K1PF_ECOLI : 236- 240: wvnas GewiA kppsv K1PF_HAEIN : 34- 38: tvetl GlfpA gkgin K1PF_HAEIN : 41- 45: fpagk GinvA kvlkd K1PF_HAEIN : 52- 56: vlkdl GvnvA vggfl K1PF_HAEIN : 235- 239: winne GvlkA epaqc K1PF_RHOCA : 42- 46: daggk GvnvA sflah K1PF_RHOCA : 53- 57: flahv GhgvA vtgll K1PF_RHOCA : 60- 64: gvavt GllgA enaal K1PF_RHOCA : 63- 67: vtgll GaenA alfar K1PF_RHOCA : 78- 82: hfaat GlvdA cqrlp K1PF_RHOCA : 141- 145: wvalc GslpA gigae K1PF_RHOCA : 163- 167: larkg GarvA ldtsg K1PF_RHOCA : 176- 180: sgpal GlalA arpdi K1PF_RHOCA : 227- 231: vavsm GaggA vlvrg K1PF_RHOCA : 254- 258: iastv GagdA mvagl K1PF_RHOCA : 262- 266: damva GlihA atlgl K1PF_RHOCA : 270- 274: haatl GldlA etarl K1PF_XANCP : 42- 46: daggk GinvA aclad K1PF_XANCP : 53- 57: cladw GsqvA algvl K1PF_XANCP : 63- 67: algvl GvgnA gvfea K1PF_XANCP : 68- 72: gvgna GvfeA lfrer K1PF_XANCP : 140- 144: pvvls GslpA glped K1PF_XANCP : 205- 209: tghpl GdhaA ltaaa K1PF_XANCP : 230- 234: vvism GtegA lfvqr K1PF_XANCP : 257- 261: qgssv GagdA mvagl K1PF_XANCP : 265- 269: damva GlaaA lldda K1PF_XANCP : 304- 308: ritpe GvrdA aaavv K6P2_ECOLI : 40- 44: snpgg GinvA raiah K6P2_ECOLI : 52- 56: iahlg GsatA ifpag K6P2_ECOLI : 170- 174: tvlgq GlsaA laign K6P2_ECOLI : 225- 229: vvvsl GpqgA lgvds KDGK_ECOLI : 135- 139: ylyls GislA ilspt KDGK_ECOLI : 287- 291: daakr GhltA stviq KDGK_ERWCH : 136- 140: yiyls GislA ilnqa KDGK_ERWCH : 288- 292: daakr GhltA stviq KDGK_HAEIN : 16- 20: mieln GkpfA emwqs KDGK_HAEIN : 135- 139: viyls GislA ilpkn KDGK_HAEIN : 230- 234: vivkc GkngA ifsdr KDGK_HAEIN : 286- 290: iccqq GnriA giviq LACC_LACLA : 224- 228: ivvsl GrngA fakhg LACC_LACLA : 259- 263: dstva GiasA lnskk LACC_LACLA : 281- 285: hamtl GmlnA qetmt LACC_STAAU : 64- 68: iggel GqfiA kkldh LACC_STAAU : 224- 228: iivsl GaqgA fakhn LACC_STAAU : 259- 263: dstva GitsA ilnhe LACC_STAAU : 281- 285: kantl GmlnA qeaqt LACC_STRMU : 224- 228: iivsl GsqgA fakhg LACC_STRMU : 259- 263: dstva GitsA laaga LACC_STRMU : 281- 285: kantl GmlnA qeklt RBSK_BACSU : 38- 42: fqtvp GgkgA nqava RBSK_BACSU : 41- 45: vpggk GanqA vaaar RBSK_ECOLI : 11- 15: slvvl GsinA dhiln RBSK_ECOLI : 41- 45: yqvaf GgkgA nqava RBSK_ECOLI : 44- 48: afggk GanqA vaagr RBSK_ECOLI : 52- 56: qavaa GrsgA niafi RBSK_ECOLI : 55- 59: aagrs GaniA fiact RBSK_ECOLI : 115- 119: igiha GanaA lspal RBSK_HAEIN : 9- 13: tltvl GsinA dhvis RBSK_HAEIN : 39- 43: yqiay GgkgA nqava RBSK_HAEIN : 42- 46: ayggk GanqA vaaar RBSK_HAEIN : 53- 57: aaarl GakvA fisci RBSK_HAEIN : 146- 150: etpls GvelA aqiak RBSK_HAEIN : 194- 198: aeilt GvevA deqsa RBSK_HAEIN : 258- 262: dtfng GfvtA lleek RBSK_HAEIN : 276- 280: eairf GqaaA aisvt RBSK_YEAST : 40- 44: haggk GlnqA aaigk SCRK_ECOLI : 28- 32: llpcp GgapA nvavg SCRK_ECOLI : 248- 252: cvdst GagdA fvagl SCRK_ECOLI : 293- 297: vtaqr GndsA amstr SCRK_KLEPN : 28- 32: llqcp GgapA nvavg SCRK_KLEPN : 224- 228: tqgka GvqaA lrgqv SCRK_KLEPN : 248- 252: avdtt GagdA fvagl SCRK_KLEPN : 292- 296: attak GamtA lpykd SCRK_RHILT : 43- 47: algrl GiptA fftgi SCRK_RHILT : 197- 201: wfglq GdhdA laahw SCRK_RHILT : 219- 223: vvitk GaegA sgytk SCRK_SALTH : 138- 142: trgka GvlaA fqqkf SCRK_SALTH : 162- 166: svdtt GagdA fvagl SCRK_SALTH : 206- 210: attak GamtA lpyqr SCRK_SALTY : 28- 32: llqcp GgapA nvavg SCRK_SALTY : 46- 50: lggns GfigA vggdp SCRK_SALTY : 224- 228: trgka GvlaA fqqkf SCRK_SALTY : 248- 252: svdtt GagdA fvagl SCRK_SALTY : 292- 296: attak GamtA lpyqr SCRK_SOLTU : 29- 33: vptvs GvslA eapgf SCRK_SOLTU : 37- 41: laeap GflkA pggap SCRK_SOLTU : 43- 47: flkap GgapA nvaia SCRK_SOLTU : 57- 61: avtrl GgksA fvgkl SCRK_SOLTU : 72- 76: gddef GhmlA gilkt SCRK_SOLTU : 94- 98: infdk GartA lafvt SCRK_SOLTU : 300- 304: tttkk GaipA lptes SCRK_VIBAL : 27- 31: llkcp GgapA nvava SCRK_VIBAL : 246- 250: pidtt GagdA fvggl SCRK_VIBAL : 253- 257: gdafv GgllA clsrh SCRK_VIBAL : 290- 294: attqk GamtA lptqt YEIC_ECOLI : 43- 47: tpggv GrniA qnlal YEIC_ECOLI : 253- 257: vinvt GagdA mmagl YEIC_ECOLI : 269- 273: scwvd GmpfA esvrf YEII_ECOLI : 96- 100: saggv GrniA hnlal YEII_ECOLI : 189- 193: llrha GvvlA dcnlt YHFQ_ECOLI : 137- 141: qlhaa GkltA fdfsd YHFQ_ECOLI : 247- 251: qaiaq GtacA aktiq YIHV_ECOLI : 28- 32: lptes GkyvA rnyte YIHV_ECOLI : 39- 43: nytev GggpA ataav YIHV_ECOLI : 40- 44: ytevg GgpaA taava YIHV_ECOLI : 144- 148: vrwhd GakkA ftlar YXDC_BACSU : 43- 47: fskyv GgspA niaig YXDC_BACSU : 145- 149: mllvs GtalA kspsr YXDC_BACSU : 270- 274: ktfga GdsyA safiy YXDC_BACSU : 294- 298: talky GsasA sivvs O 15: 8.3401 102( 28) A-x-G Occurences: 102(28) INGK_ECOLI : 91- 93: ithqf AgG tignt K1PF_ECOLI : 38- 40: ttglh AaG kginv K1PF_ECOLI : 226- 228: vislg AeG alwvn K1PF_ECOLI : 234- 236: alwvn AsG ewiak K1PF_HAEIN : 56- 58: lgvnv AvG gflgk K1PF_HAEIN : 213- 215: aqqlk AeG ienvi K1PF_HAEIN : 225- 227: iismg AkG slwin K1PF_RHOCA : 38- 40: asrid AgG kgvnv K1PF_RHOCA : 76- 78: arhfa AtG lvdac K1PF_RHOCA : 113- 115: nfpgi AaG padld K1PF_RHOCA : 131- 133: ltell AqG ldwva K1PF_RHOCA : 174- 176: dtsgp AlG lalaa K1PF_RHOCA : 216- 218: ardla AsG vglva K1PF_RHOCA : 228- 230: avsmg AgG avlvr K1PF_RHOCA : 287- 289: afslg AlG eigph K1PF_XANCP : 38- 40: svrnd AgG kginv K1PF_XANCP : 58- 60: gsqva AlG vlgvg K1PF_XANCP : 160- 162: qaqas AaG strpa K1PF_XANCP : 219- 221: ahali ArG iqlvv K1PF_XANCP : 251- 253: rpprl AqG ssvga K6P2_ECOLI : 60- 62: taifp AgG atgeh K6P2_ECOLI : 63- 65: fpagg AtG ehlvs K6P2_ECOLI : 98- 100: hvhve AsG eqyrf K6P2_ECOLI : 176- 178: lsaal AiG nielv K6P2_ECOLI : 229- 231: lgpqg AlG vdsen K6P2_ECOLI : 280- 282: vrfgv AaG saatl KDGK_ECOLI : 53- 55: vhyvt AlG tdsfs KDGK_ECOLI : 158- 160: lrecr AnG gkvif KDGK_ECOLI : 261- 263: vidtt AaG dsfsa KDGK_ERWCH : 54- 56: vhyvt AlG tdsfs KDGK_ERWCH : 95- 97: fietd AtG ertfy KDGK_ERWCH : 159- 161: lracr AnG gkvif KDGK_ERWCH : 262- 264: vvdtt AaG dsfsa KDGK_HAEIN : 53- 55: vhyvs AlG tdnls KDGK_HAEIN : 69- 71: lkywq AdG iqtnw KDGK_HAEIN : 94- 96: liqld AqG ertfl LACC_LACLA : 35- 37: dvskt AgG kglnv LACC_LACLA : 55- 57: gdkvt AtG flggk LACC_LACLA : 114- 116: ishee AeG fldhy LACC_STAAU : 35- 37: evskt AgG kglnv LACC_STAAU : 55- 57: gepvl AsG figge LACC_STAAU : 114- 116: idnqe AaG fikhf LACC_STAAU : 225- 227: ivslg AqG afakh LACC_STRMU : 55- 57: gddvl AsG llggk LACC_STRMU : 265- 267: itsal AaG asdek RBSK_BACSU : 76- 78: lnnlk AnG vrtdy RBSK_BACSU : 100- 102: ahivl AeG dnsiv RBSK_BACSU : 253- 255: faval AeG kdiea RBSK_BACSU : 278- 280: vcsfg AqG gmpdk RBSK_ECOLI : 39- 41: nhyqv AfG gkgan RBSK_ECOLI : 50- 52: anqav AaG rsgan RBSK_ECOLI : 252- 254: avdti AaG dtfng RBSK_HAEIN : 37- 39: qnyqi AyG gkgan RBSK_HAEIN : 111- 113: nsivl AsG anshl RBSK_HAEIN : 224- 226: mitlg AkG vfvsr RBSK_HAEIN : 250- 252: aidtt AaG dtfng RBSK_YEAST : 36- 38: hfeth AgG kglnq RBSK_YEAST : 46- 48: lnqaa AiG klknp RBSK_YEAST : 107- 109: lieek AgG qnril SCRK_ECOLI : 35- 37: apanv AvG iarlg SCRK_ECOLI : 149- 151: tairh AgG fvsfd SCRK_ECOLI : 222- 224: lvtkg AeG vvvcy SCRK_KLEPN : 35- 37: apanv AvG varlg SCRK_KLEPN : 118- 120: dlppf AaG qwlhv SCRK_KLEPN : 149- 151: eaikr AgG yvsfd SCRK_KLEPN : 263- 265: lagla AhG ipdnl SCRK_KLEPN : 290- 292: alatt AkG amtal SCRK_RHILT : 28- 30: gfapy AgG aifnt SCRK_RHILT : 38- 40: fntai AlG rlgip SCRK_RHILT : 220- 222: vitkg AeG asgyt SCRK_RHILT : 223- 225: kgaeg AsG ytkdr SCRK_SALTH : 32- 34: dlpqf AaG qwlhv SCRK_SALTH : 63- 65: esirs AgG rvsfd SCRK_SALTH : 115- 117: ssndl AyG iasvt SCRK_SALTH : 177- 179: lasla AnG mptdm SCRK_SALTH : 204- 206: alatt AkG amtal SCRK_SALTY : 35- 37: apanv AvG varlg SCRK_SALTY : 50- 52: sgfig AvG gdpfg SCRK_SALTY : 118- 120: dlpqf AaG qwlhv SCRK_SALTY : 149- 151: esirs AgG rvsfd SCRK_SALTY : 201- 203: ssndl AyG iasvt SCRK_SALTY : 263- 265: lasla AnG mptdm SCRK_SALTY : 290- 292: alatt AkG amtal SCRK_SOLTU : 35- 37: vslae ApG flkap SCRK_SOLTU : 41- 43: pgflk ApG gapan SCRK_SOLTU : 86- 88: tngvq AdG infdk SCRK_SOLTU : 106- 108: fvtlr AdG erefm SCRK_SOLTU : 290- 292: lrfsc AcG aittt SCRK_VIBAL : 147- 149: ikrak AaG gfisf SCRK_VIBAL : 148- 150: kraka AgG fisfd SCRK_VIBAL : 200- 202: dstsm AqG lqqia SCRK_VIBAL : 220- 222: lvtqg AkG vwrvf SCRK_VIBAL : 278- 280: saiqw AnG cgala YEIC_ECOLI : 62- 64: awlls AvG sdfyg YEIC_ECOLI : 279- 281: esvrf AqG cssma YEII_ECOLI : 92- 94: tihcs AgG vgrni YHFQ_ECOLI : 135- 137: fpqlh AaG kltaf YHFQ_ECOLI : 183- 185: mkaiv ArG agtvi YHFQ_ECOLI : 245- 247: lpqai AqG tacaa YIHV_ECOLI : 269- 271: esvrf AsG vaalk YXDC_BACSU : 15- 17: afdiv AiG racid YXDC_BACSU : 50- 52: spani AiG saklg P 16: 8.3401 129( 28) A-x(5)-A Occurences: 129(28) INGK_ECOLI : 252- 258: hvsil AmnedeA ealtg INGK_ECOLI : 356- 362: mntng AgdgalA alpdd INGK_ECOLI : 395- 401: tyssl AqvckyA nrvsy K1PF_ECOLI : 234- 240: alwvn AsgewiA kppsv K1PF_HAEIN : 207- 213: eeiia AaqqlkA egien K1PF_HAEIN : 253- 259: vstvg AgdsmvA gliyg K1PF_RHOCA : 27- 33: gftad AvnrvaA srida K1PF_RHOCA : 32- 38: avnrv AasridA ggkgv K1PF_RHOCA : 76- 82: arhfa AtglvdA cqrlp K1PF_RHOCA : 117- 123: iaagp AdldavA atlte K1PF_RHOCA : 145- 151: cgslp AgigaeA yaela K1PF_RHOCA : 151- 157: gigae AyaelaA larkg K1PF_RHOCA : 153- 159: gaeay AelaalA rkgga K1PF_RHOCA : 174- 180: dtsgp AlglalA arpdi K1PF_RHOCA : 210- 216: esvre AardlaA sgvgl K1PF_RHOCA : 231- 237: mgagg AvlvrgA eavla K1PF_RHOCA : 255- 261: astvg AgdamvA gliha K1PF_RHOCA : 261- 267: gdamv AglihaA tlgld K1PF_RHOCA : 274- 280: lgldl AetarlA tafsl K1PF_XANCP : 117- 123: lqlgq AhlqgvA dhlap K1PF_XANCP : 152- 158: pedsw AqlqaqA saags K1PF_XANCP : 161- 167: aqasa AgstrpA rhqrc K1PF_XANCP : 167- 173: gstrp ArhqrcA avaal K1PF_XANCP : 173- 179: rhqrc AavaalA aapva K1PF_XANCP : 174- 180: hqrca AvaalaA apvam K1PF_XANCP : 208- 214: plgdh AaltaaA halia K1PF_XANCP : 213- 219: aalta AahaliA rgiql K1PF_XANCP : 245- 251: dqqli ArpprlA qgssv K1PF_XANCP : 258- 264: gssvg AgdamvA glaaa K1PF_XANCP : 261- 267: vgagd AmvaglA aalld K1PF_XANCP : 268- 274: vagla AallddA teleq K1PF_XANCP : 310- 316: vrdaa AavvigA vp K6P2_ECOLI : 10- 16: ytltl ApsldsA titpq K6P2_ECOLI : 48- 54: varai AhlggsA taifp K6P2_ECOLI : 54- 60: hlggs AtaifpA ggatg K6P2_ECOLI : 260- 266: drlvg AmtlklA enasl KDGK_ECOLI : 38- 44: tsvyi ArqvdpA altvh KDGK_ECOLI : 120- 126: seqsa AiceelA nfdyl KDGK_ECOLI : 262- 268: idtta AgdsfsA gylav KDGK_ECOLI : 300- 306: iqyrg AiipreA mpa KDGK_ERWCH : 184- 190: eetrq AysdmlA ctdia KDGK_ERWCH : 243- 249: siqge AllevpA iklpk KDGK_ERWCH : 263- 269: vdtta AgdsfsA gylsv KDGK_ERWCH : 316- 322: eqrys AeetknA asvpy KDGK_HAEIN : 261- 267: vdtts AgdsfnA gflng KDGK_HAEIN : 299- 305: iqhkg AiidkvA ishlq LACC_LACLA : 153- 159: kliql AsdegvA vvldc LACC_LACLA : 271- 277: skksd AdllkhA mtlgm LACC_STAAU : 68- 74: lgqfi AkkldhA dikha LACC_STRMU : 69- 75: gefle AeldksA ikhsf RBSK_BACSU : 42- 48: pggkg AnqavaA arlga RBSK_BACSU : 47- 53: anqav AaarlgA qvfmv RBSK_BACSU : 199- 205: ltise AlalypA klfit RBSK_BACSU : 240- 246: vdttg AgdtfnA afava RBSK_BACSU : 247- 253: dtfna AfavalA egkdi RBSK_ECOLI : 39- 45: nhyqv AfggkgA nqava RBSK_ECOLI : 45- 51: fggkg AnqavaA grsga RBSK_ECOLI : 50- 56: anqav AagrsgA niafi RBSK_ECOLI : 56- 62: agrsg AniafiA ctgdd RBSK_ECOLI : 127- 133: palve AqreriA nasal RBSK_ECOLI : 164- 170: nktiv AlnpapA relpd RBSK_ECOLI : 247- 253: gfrvq AvdtiaA gdtfn RBSK_ECOLI : 274- 280: kplpe AirfahA aaaia RBSK_ECOLI : 285- 291: aaaai AvtrkgA qpsvp RBSK_HAEIN : 37- 43: qnyqi AyggkgA nqava RBSK_HAEIN : 43- 49: yggkg AnqavaA arlga RBSK_HAEIN : 48- 54: anqav AaarlgA kvafi RBSK_HAEIN : 245- 251: gfcvq AidttaA gdtfn RBSK_HAEIN : 272- 278: ksfde AirfgqA aaais RBSK_YEAST : 23- 29: drlpn AgetfrA nhfet SCRK_ECOLI : 139- 145: psrts AftamtA irhag SCRK_ECOLI : 208- 214: dical AkeyeiA mllvt SCRK_ECOLI : 249- 255: vdstg AgdafvA glltg SCRK_KLEPN : 177- 183: dcldr AlaladA iklse SCRK_KLEPN : 243- 249: arpvv AvdttgA gdafv SCRK_KLEPN : 249- 255: vdttg AgdafvA gllag SCRK_KLEPN : 272- 278: pdnla AlapdlA laqtc SCRK_KLEPN : 274- 280: nlaal ApdlalA qtcga SCRK_KLEPN : 287- 293: tcgal AttakgA mtalp SCRK_KLEPN : 290- 296: alatt AkgamtA lpykd SCRK_RHILT : 25- 31: gekgf ApyaggA ifnta SCRK_RHILT : 47- 53: lgipt AfftgiA ddmmg SCRK_RHILT : 141- 147: getye AlldreA asrvi SCRK_RHILT : 171- 177: kpshm ArikrmA aksdi SCRK_RHILT : 247- 253: vdtvg AgdtfdA gilas SCRK_RHILT : 271- 277: tkrqv AsldeqA lrngp SCRK_SALTH : 163- 169: vdttg AgdafvA gllas SCRK_SALTH : 201- 207: tcgal AttakgA mtalp SCRK_SALTH : 204- 210: alatt AkgamtA lpyqr SCRK_SALTY : 249- 255: vdttg AgdafvA gllas SCRK_SALTY : 287- 293: tcgal AttakgA mtalp SCRK_SALTY : 290- 296: alatt AkgamtA lpyqr SCRK_SOLTU : 35- 41: vslae ApgflkA pggap SCRK_SOLTU : 41- 47: pgflk ApggapA nvaia SCRK_SOLTU : 100- 106: artal AfvtlrA dgere SCRK_SOLTU : 273- 279: ivddq AiledeA rlkev SCRK_VIBAL : 141- 147: sstfe AikrakA aggfi SCRK_VIBAL : 257- 263: vggll AclsrhA dwknh SCRK_VIBAL : 285- 291: gcgal AttqkgA mtalp YEIC_ECOLI : 51- 57: iaqnl AllgnkA wllsa YEIC_ECOLI : 150- 156: seeal AwildnA anvpv YEIC_ECOLI : 254- 260: invtg AgdammA glasc YEIC_ECOLI : 257- 263: tgagd AmmaglA scwvd YEIC_ECOLI : 273- 279: dgmpf AesvrfA qgcss YEII_ECOLI : 193- 199: agvvl AdcnltA ealew YEII_ECOLI : 307- 313: vdsfg AddgfmA glvys YEII_ECOLI : 329- 335: sfrds ArfavaA rqfra YEII_ECOLI : 334- 340: arfav AarqfrA paaa YHFQ_ECOLI : 21- 27: pqlnk AfsggnA vnvav YHFQ_ECOLI : 120- 126: ydivh AaiwghA edafp YHFQ_ECOLI : 129- 135: ghaed AfpqlhA agklt YHFQ_ECOLI : 135- 141: fpqlh AagkltA fdfsd YHFQ_ECOLI : 180- 186: rlkmk AivargA gtviv YHFQ_ECOLI : 204- 210: iawdg AqfwrqA pepvt YHFQ_ECOLI : 222- 228: idtmg AgdsfiA gflcg YHFQ_ECOLI : 243- 249: mtlpq AiaqgtA caakt YHFQ_ECOLI : 245- 251: lpqai AqgtacA aktiq YIHV_ECOLI : 43- 49: vgggp AataavA aarlg YIHV_ECOLI : 44- 50: gggpa AtaavaA arlga YIHV_ECOLI : 49- 55: ataav AaarlgA qvdfi YIHV_ECOLI : 92- 98: krynq AkssqsA imvdt YIHV_ECOLI : 175- 181: iselv AlsdhaA fsepg YIHV_ECOLI : 197- 203: gvkem AsalkqA qtltn YIHV_ECOLI : 251- 257: dvfhg AlavalA tsgdl YIHV_ECOLI : 257- 263: laval AtsgdlA esvrf YIHV_ECOLI : 263- 269: tsgdl AesvrfA sgvaa YXDC_BACSU : 19- 25: vaigr AcidlnA veynr YXDC_BACSU : 54- 60: iaigs AklglkA gfigk YXDC_BACSU : 290- 296: kdiet AlkygsA sasiv Q 17: 8.3401 115( 28) L-A Occurences: 115(28) INGK_ECOLI : 105- 106: hnysv LA ddrsv INGK_ECOLI : 251- 252: dhvsi LA mnede INGK_ECOLI : 269- 270: esdpl LA sdkal INGK_ECOLI : 361- 362: agdga LA alpdd INGK_ECOLI : 394- 395: styss LA qvcky INGK_ECOLI : 420- 421: rltrg LA vedsl K1PF_ECOLI : 277- 278: ehtlr LA tavaa K1PF_ECOLI : 284- 285: tavaa LA vsqsn K1PF_ECOLI : 299- 300: tdrpq LA ammar K1PF_HAEIN : 125- 126: fvtds LA yclny K1PF_HAEIN : 275- 276: sktet LA fatav K1PF_RHOCA : 49- 50: nvasf LA hvghg K1PF_RHOCA : 130- 131: tltel LA qgldw K1PF_RHOCA : 155- 156: eayae LA alark K1PF_RHOCA : 158- 159: aelaa LA rkgga K1PF_RHOCA : 177- 178: gpalg LA laarp K1PF_RHOCA : 179- 180: algla LA arpdi K1PF_RHOCA : 214- 215: eaard LA asgvg K1PF_RHOCA : 241- 242: gaeav LA ippat K1PF_RHOCA : 273- 274: tlgld LA etarl K1PF_RHOCA : 279- 280: aetar LA tafsl K1PF_RHOCA : 301- 302: ppper LA alart K1PF_RHOCA : 304- 305: erlaa LA rtvtv K1PF_XANCP : 49- 50: nvaac LA dwgsq K1PF_XANCP : 126- 127: gvadh LA pllra K1PF_XANCP : 178- 179: aavaa LA aapva K1PF_XANCP : 250- 251: arppr LA qgssv K1PF_XANCP : 266- 267: amvag LA aalld K1PF_XANCP : 283- 284: eqcar LA tafsm K6P2_ECOLI : 9- 10: iytlt LA pslds K6P2_ECOLI : 72- 73: hlvsl LA denvp K6P2_ECOLI : 175- 176: glsaa LA ignie K6P2_ECOLI : 265- 266: amtlk LA enasl KDGK_ECOLI : 125- 126: aicee LA nfdyl KDGK_ECOLI : 138- 139: lsgis LA ilspt KDGK_ECOLI : 271- 272: fsagy LA vrltg KDGK_ERWCH : 126- 127: tisqq LA qfdyi KDGK_ERWCH : 139- 140: lsgis LA ilnqa KDGK_ERWCH : 189- 190: aysdm LA ctdia KDGK_HAEIN : 138- 139: lsgis LA ilpkn KDGK_HAEIN : 156- 157: eqlss LA kkgte LACC_LACLA : 152- 153: ekliq LA sdegv LACC_STAAU : 46- 47: nvtrv LA qvgep LACC_STAAU : 54- 55: vgepv LA sgfig LACC_STRMU : 54- 55: lgddv LA sgllg LACC_STRMU : 208- 209: vlkha LA spifs LACC_STRMU : 264- 265: gitsa LA agasd RBSK_BACSU : 99- 100: tahiv LA egdns RBSK_BACSU : 200- 201: tisea LA lypak RBSK_BACSU : 252- 253: afava LA egkdi RBSK_ECOLI : 77- 78: svrqq LA tdnid RBSK_ECOLI : 178- 179: lpdel LA lvdii RBSK_HAEIN : 110- 111: ensiv LA sgans RBSK_HAEIN : 149- 150: lsgve LA aqiak RBSK_YEAST : 308- 309: ikfst LA sslti SCRK_ECOLI : 180- 181: rqalq LA dvvkl SCRK_ECOLI : 207- 208: rdica LA keyei SCRK_ECOLI : 279- 280: rriid LA qrcga SCRK_ECOLI : 286- 287: qrcga LA vtaqr SCRK_KLEPN : 64- 65: fmrht LA qeqvd SCRK_KLEPN : 178- 179: cldra LA ladai SCRK_KLEPN : 180- 181: drala LA daikl SCRK_KLEPN : 191- 192: lseee LA fisgs SCRK_KLEPN : 258- 259: fvagl LA glaah SCRK_KLEPN : 261- 262: gllag LA ahgip SCRK_KLEPN : 270- 271: gipdn LA alapd SCRK_KLEPN : 273- 274: dnlaa LA pdlal SCRK_KLEPN : 277- 278: alapd LA laqtc SCRK_KLEPN : 279- 280: apdla LA qtcga SCRK_KLEPN : 286- 287: qtcga LA ttakg SCRK_RHILT : 202- 203: gdhda LA ahwln SCRK_RHILT : 256- 257: fdagi LA slkmd SCRK_SALTH : 85- 86: dqall LA cldra SCRK_SALTH : 114- 115: sssnd LA ygias SCRK_SALTH : 140- 141: gkagv LA afqqk SCRK_SALTH : 172- 173: fvagl LA slaan SCRK_SALTH : 175- 176: gllas LA angmp SCRK_SALTH : 193- 194: eptlt LA qtcga SCRK_SALTH : 200- 201: qtcga LA ttakg SCRK_SALTY : 171- 172: dqall LA cldra SCRK_SALTY : 200- 201: sssnd LA ygias SCRK_SALTY : 226- 227: gkagv LA afqqk SCRK_SALTY : 258- 259: fvagl LA slaan SCRK_SALTY : 261- 262: gllas LA angmp SCRK_SALTY : 279- 280: eptlt LA qtcga SCRK_SALTY : 286- 287: qtcga LA ttakg SCRK_SOLTU : 32- 33: vsgvs LA eapgf SCRK_SOLTU : 75- 76: efghm LA gilkt SCRK_SOLTU : 99- 100: garta LA fvtlr SCRK_VIBAL : 129- 130: vcsis LA nepsr SCRK_VIBAL : 256- 257: fvggl LA clsrh SCRK_VIBAL : 284- 285: ngcga LA ttqkg YEIC_ECOLI : 50- 51: niaqn LA llgnk YEIC_ECOLI : 125- 126: itaey LA qhgef YEIC_ECOLI : 149- 150: iseea LA wildn YEIC_ECOLI : 262- 263: ammag LA scwvd YEII_ECOLI : 9- 10: rekei LA ilrrn YEII_ECOLI : 103- 104: niahn LA llgrd YEII_ECOLI : 151- 152: ststy LA ianrd YEII_ECOLI : 162- 163: ddqtv LA indth YEII_ECOLI : 192- 193: hagvv LA dcnlt YEII_ECOLI : 208- 209: ewvft LA deipv YEII_ECOLI : 231- 232: kikhw LA hihtl YHFQ_ECOLI : 4- 5: mkt LA tigdn YHFQ_ECOLI : 60- 61: klkqd LA rmgvd YHFQ_ECOLI : 112- 113: edyaw LA qydiv YIHV_ECOLI : 73- 74: tgnsl LA elesw YIHV_ECOLI : 136- 137: qwdvv LA dvrwh YIHV_ECOLI : 151- 152: kkaft LA rqagv YIHV_ECOLI : 187- 188: fsepg LA rltgv YIHV_ECOLI : 252- 253: vfhga LA valat YIHV_ECOLI : 256- 257: alava LA tsgdl YIHV_ECOLI : 262- 263: atsgd LA esvrf YXDC_BACSU : 100- 101: ghkag LA fteil YXDC_BACSU : 148- 149: vsgta LA kspsr R 18: 8.3401 48( 28) D-x-T Occurences: 48(28) INGK_ECOLI : 40- 42: wvvgi DqT lvdie INGK_ECOLI : 367- 369: aalpd DiT ansyh K1PF_ECOLI : 55- 57: kdlgi DvT vggfl K1PF_HAEIN : 101- 103: tetea DvT dlnfl K1PF_RHOCA : 15- 17: lnsav DqT vtvpg K1PF_XANCP : 15- 17: lnpat DqT iqldr K1PF_XANCP : 273- 275: aalld DaT eleqc K6P2_ECOLI : 86- 88: tveak DwT rqnlh K6P2_ECOLI : 297- 299: rlcsh DdT qkiya KDGK_ECOLI : 93- 95: yyiet DsT gertf KDGK_ECOLI : 258- 260: kekvi DtT aagds KDGK_ERWCH : 94- 96: yfiet DaT gertf KDGK_ERWCH : 259- 261: kekvv DtT aagds KDGK_HAEIN : 145- 147: ilpkn DrT flieq KDGK_HAEIN : 207- 209: qalwk DkT srdtl KDGK_HAEIN : 257- 259: ilnvv DtT sagds LACC_LACLA : 254- 256: pvgsg DsT vagia LACC_STAAU : 254- 256: pvgsg DsT vagit LACC_STRMU : 254- 256: pvgsg DsT vagit RBSK_BACSU : 115- 117: kgand DiT payal RBSK_BACSU : 236- 238: pvepv DtT gagdt RBSK_ECOLI : 83- 85: atdni DiT pvsvi RBSK_HAEIN : 81- 83: aqegi DtT hintv RBSK_HAEIN : 247- 249: cvqai DtT aagdt RBSK_YEAST : 84- 86: sdcgv DiT hvgty RBSK_YEAST : 277- 279: nvsvv DtT gagdt SCRK_ECOLI : 70- 72: ltegv DiT ylkqd SCRK_ECOLI : 245- 247: svncv DsT gagda SCRK_KLEPN : 245- 247: pvvav DtT gagda SCRK_RHILT : 16- 18: dmlpr DtT lgekg SCRK_RHILT : 321- 323: dphpp DdT fsp SCRK_SALTH : 159- 161: pvasv DtT gagda SCRK_SALTH : 183- 185: ngmpt DmT alept SCRK_SALTY : 245- 247: pvasv DtT gagda SCRK_SALTY : 269- 271: ngmpt DmT alept SCRK_SOLTU : 252- 254: hvktv DtT gagds SCRK_VIBAL : 195- 197: llflt DsT smaqg SCRK_VIBAL : 243- 245: vvspi DtT gagda YEIC_ECOLI : 102- 104: ylsll DnT gemlv YEII_ECOLI : 158- 160: ianrd DqT vlain YHFQ_ECOLI : 93- 95: drvfg DyT egvma YHFQ_ECOLI : 171- 173: sapqe DeT lrlkm YIHV_ECOLI : 66- 68: grvgd DdT gnsll YIHV_ECOLI : 164- 166: tvldg DiT pqdis YIHV_ECOLI : 240- 242: kvdvv DtT gagdv YIHV_ECOLI : 290- 292: gipdc DqT rsfls YXDC_BACSU : 85- 87: rktgv DtT qmivd YXDC_BACSU : 186- 188: twqss DeT avyys S 19: 8.3401 101( 28) L-x-A Occurences: 101(28) INGK_ECOLI : 60- 62: ieryg LsA ghslv INGK_ECOLI : 174- 176: ghmnq LrA esipe INGK_ECOLI : 268- 270: gesdp LlA sdkal INGK_ECOLI : 361- 363: agdga LaA lpddi K1PF_ECOLI : 36- 38: vkttg LhA agkgi K1PF_ECOLI : 173- 175: ssrea LvA glkaa K1PF_ECOLI : 177- 179: alvag LkA apwlv K1PF_ECOLI : 224- 226: hvvis LgA egalw K1PF_ECOLI : 299- 301: tdrpq LaA mmarv K1PF_HAEIN : 9- 11: vvtit LnA aydlv K1PF_HAEIN : 148- 150: gvspe LfA dwlnq K1PF_HAEIN : 172- 174: ssnaa LtA glkak K1PF_HAEIN : 176- 178: altag LkA kpwlv K1PF_HAEIN : 190- 192: pnhre LeA wvghp K1PF_HAEIN : 211- 213: aaaqq LkA egien K1PF_HAEIN : 237- 239: nnegv LkA epaqc K1PF_RHOCA : 62- 64: avtgl LgA enaal K1PF_RHOCA : 69- 71: aenaa LfA rhfaa K1PF_RHOCA : 119- 121: agpad LdA vaatl K1PF_RHOCA : 129- 131: atlte LlA qgldw K1PF_RHOCA : 143- 145: alcgs LpA gigae K1PF_RHOCA : 155- 157: eayae LaA larkg K1PF_RHOCA : 179- 181: algla LaA rpdiv K1PF_RHOCA : 193- 195: pnvae LgA hlgrt K1PF_RHOCA : 214- 216: eaard LaA sgvgl K1PF_RHOCA : 221- 223: asgvg LvA vsmga K1PF_RHOCA : 285- 287: atafs LgA lgeig K1PF_RHOCA : 301- 303: ppper LaA lartv K1PF_XANCP : 3- 5: ms LqA itvtl K1PF_XANCP : 130- 132: hlapl LrA glpvv K1PF_XANCP : 142- 144: vlsgs LpA glped K1PF_XANCP : 154- 156: dswaq LqA qasaa K1PF_XANCP : 178- 180: aavaa LaA apvam K1PF_XANCP : 196- 198: pnrhe LeA wtghp K1PF_XANCP : 210- 212: gdhaa LtA aahal K1PF_XANCP : 217- 219: aaaha LiA rgiql K1PF_XANCP : 243- 245: qrdqq LiA rpprl K1PF_XANCP : 266- 268: amvag LaA alldd K6P2_ECOLI : 71- 73: ehlvs LlA denvp K6P2_ECOLI : 171- 173: vlgqg LsA alaig K6P2_ECOLI : 190- 192: pnqke LsA lvnre KDGK_ECOLI : 64- 66: fsqqm LdA whgen KDGK_ECOLI : 173- 175: nyrpr LwA skeet KDGK_ECOLI : 289- 291: akrgh LtA stviq KDGK_ERWCH : 154- 156: rlltv LrA crang KDGK_ERWCH : 290- 292: akrgh LtA stviq KDGK_HAEIN : 92- 94: lyliq LdA qgert LACC_LACLA : 283- 285: mtlgm LnA qetmt LACC_STAAU : 17- 19: disyp LtA lkldd LACC_STAAU : 223- 225: wiivs LgA qgafa LACC_STAAU : 283- 285: ntlgm LnA qeaqt LACC_STRMU : 67- 69: klgef LeA eldks LACC_STRMU : 264- 266: gitsa LaA gasde LACC_STRMU : 283- 285: ntlgm LnA qeklt RBSK_BACSU : 51- 53: vaaar LgA qvfmv RBSK_BACSU : 74- 76: ailnn LkA ngvrt RBSK_BACSU : 122- 124: tpaya LnA leqie RBSK_ECOLI : 177- 179: elpde LlA lvdii RBSK_HAEIN : 52- 54: vaaar LgA kvafi RBSK_HAEIN : 149- 151: lsgve LaA qiakk RBSK_HAEIN : 222- 224: tvmit LgA kgvfv RBSK_YEAST : 267- 269: pevqf LpA iqnvs SCRK_ECOLI : 130- 132: lcsia LsA epsrt SCRK_KLEPN : 76- 78: vnymr LdA aqrts SCRK_KLEPN : 130- 132: vcsia LsA epsrs SCRK_KLEPN : 143- 145: ttfaa LeA ikrag SCRK_KLEPN : 207- 209: sgiar LnA rfqpt SCRK_KLEPN : 257- 259: afvag LlA glaah SCRK_KLEPN : 261- 263: gllag LaA hgipd SCRK_KLEPN : 270- 272: gipdn LaA lapdl SCRK_RHILT : 65- 67: illet LkA snvdy SCRK_RHILT : 202- 204: gdhda LaA hwlnh SCRK_RHILT : 302- 304: rrqst LgA rdwsl SCRK_SALTH : 44- 46: vcsia LsA epsrs SCRK_SALTH : 84- 86: qdqal LlA cldra SCRK_SALTH : 140- 142: gkagv LaA fqqkf SCRK_SALTH : 171- 173: afvag LlA slaan SCRK_SALTH : 175- 177: gllas LaA ngmpt SCRK_SALTY : 130- 132: vcsia LsA epsrs SCRK_SALTY : 170- 172: qdqal LlA cldra SCRK_SALTY : 226- 228: gkagv LaA fqqkf SCRK_SALTY : 257- 259: afvag LlA slaan SCRK_SALTY : 261- 263: gllas LaA ngmpt SCRK_SOLTU : 39- 41: eapgf LkA pggap SCRK_SOLTU : 104- 106: lafvt LrA dgere SCRK_SOLTU : 157- 159: crsah LkA mevak SCRK_VIBAL : 255- 257: afvgg LlA clsrh YEIC_ECOLI : 60- 62: nkawl LsA vgsdf YEIC_ECOLI : 108- 110: ntgem LvA indmn YEIC_ECOLI : 189- 191: lkpnr LeA etlsg YEII_ECOLI : 197- 199: ladcn LtA ealew YEII_ECOLI : 294- 296: geqfl LtA pahtt YHFQ_ECOLI : 133- 135: dafpq LhA agklt YHFQ_ECOLI : 139- 141: haagk LtA fdfsd YIHV_ECOLI : 53- 55: vaaar LgA qvdfi YIHV_ECOLI : 72- 74: dtgns LlA elesw YIHV_ECOLI : 173- 175: qdise LvA lsdha YXDC_BACSU : 23- 25: racid LnA veynr YXDC_BACSU : 58- 60: saklg LkA gfigk YXDC_BACSU : 158- 160: sreav LkA vqyak YXDC_BACSU : 194- 196: avyys LvA eqsdi T 20: 8.3401 71( 28) S-x(2)-A Occurences: 71(28) INGK_ECOLI : 103- 106: tmhny SvlA ddrsv INGK_ECOLI : 249- 252: lkdhv SilA mnede INGK_ECOLI : 271- 274: dplla SdkA ldwvd INGK_ECOLI : 338- 341: plrvy ShiA pymgg INGK_ECOLI : 392- 395: twsty SslA qvcky K1PF_ECOLI : 146- 149: lpsgv SpeA ftdwm K1PF_ECOLI : 169- 172: iifds SreA lvagl K1PF_ECOLI : 223- 226: ahvvi SlgA egalw K1PF_HAEIN : 167- 170: kvvld SsnA altag K1PF_HAEIN : 168- 171: vvlds SnaA ltagl K1PF_HAEIN : 222- 225: envii SmgA kgslw K1PF_HAEIN : 256- 259: vgagd SmvA gliyg K1PF_HAEIN : 282- 285: fatav SafA vsqsn K1PF_RHOCA : 47- 50: gvnva SflA hvghg K1PF_RHOCA : 142- 145: valcg SlpA gigae K1PF_RHOCA : 171- 174: valdt SgpA lglal K1PF_RHOCA : 225- 228: glvav SmgA ggavl K1PF_RHOCA : 284- 287: lataf SlgA lgeig K1PF_XANCP : 2- 5: m SlqA itvtl K1PF_XANCP : 54- 57: ladwg SqvA algvl K1PF_XANCP : 141- 144: vvlsg SlpA glped K1PF_XANCP : 255- 258: laqgs SvgA gdamv K1PF_XANCP : 294- 297: mcrle SgdA rritp K6P2_ECOLI : 53- 56: ahlgg SatA ifpag K6P2_ECOLI : 70- 73: gehlv SllA denvp K6P2_ECOLI : 214- 217: qeivn SgkA krvvv KDGK_ECOLI : 265- 268: taagd SfsA gylav KDGK_ERWCH : 17- 20: cmiel SrkA risir KDGK_ERWCH : 116- 119: rywle SpdA dtisq KDGK_ERWCH : 266- 269: taagd SfsA gylsv KDGK_HAEIN : 154- 157: lieql SslA kkgte KDGK_HAEIN : 264- 267: tsagd SfnA gflng LACC_LACLA : 32- 35: rvkdv SktA ggkgl LACC_LACLA : 255- 258: vgsgd StvA giasa LACC_STAAU : 32- 35: rvqev SktA ggkgl LACC_STAAU : 222- 225: ewiiv SlgA qgafa LACC_STAAU : 255- 258: vgsgd StvA gitsa LACC_STRMU : 165- 168: ivldc SgqA llevl LACC_STRMU : 225- 228: ivslg SqgA fakhg LACC_STRMU : 255- 258: vgsgd StvA gitsa LACC_STRMU : 262- 265: vagit SalA agasd RBSK_BACSU : 92- 95: vthte SgtA hivla RBSK_BACSU : 275- 278: slsvc SfgA qggmp RBSK_ECOLI : 12- 15: lvvlg SinA dhiln RBSK_ECOLI : 148- 151: esple SvmA aakia RBSK_HAEIN : 10- 13: ltvlg SinA dhvis RBSK_YEAST : 306- 309: maikf StlA sslti SCRK_ECOLI : 246- 249: vncvd StgA gdafv SCRK_KLEPN : 202- 205: sddiv SgiA rlnar SCRK_RHILT : 73- 76: snvdy SpcA itprp SCRK_RHILT : 82- 85: itprp StiA fvklv SCRK_RHILT : 168- 171: ikdkp ShmA rikrm SCRK_SALTH : 174- 177: aglla SlaA ngmpt SCRK_SALTY : 260- 263: aglla SlaA ngmpt SCRK_SOLTU : 182- 185: rlplw SseA earka SCRK_VIBAL : 260- 263: llacl SrhA dwknh YEIC_ECOLI : 145- 148: adcni SeeA lawil YEIC_ECOLI : 195- 198: eaetl SgiA lsgre YEIC_ECOLI : 283- 286: faqgc SsmA lscey YEII_ECOLI : 32- 35: lqisr SrvA ahimd YEII_ECOLI : 304- 307: httvd SfgA ddgfm YHFQ_ECOLI : 225- 228: mgagd SfiA gflcg YIHV_ECOLI : 71- 74: ddtgn SllA elesw YIHV_ECOLI : 95- 98: nqaks SqsA imvdt YIHV_ECOLI : 177- 180: elval SdhA afsep YIHV_ECOLI : 270- 273: svrfa SgvA alkct YXDC_BACSU : 144- 147: kmllv SgtA laksp YXDC_BACSU : 153- 156: laksp SreA vlkav YXDC_BACSU : 193- 196: tavyy SlvA eqsdi YXDC_BACSU : 295- 298: alkyg SasA sivvs YXDC_BACSU : 307- 310: vskhs SseA mptae Number of patterns evaluated by Pratt:1230 Total running time: 4 seconds