------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file PEP_ENZYMES_PHOS_SITE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PEP_ENZYMES_PHOS_SITE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PODK_BACSY 839 PODK_ENTHI 885 PODK_FLATR 953 PODK_MAIZE 947 PPSA_ECOLI 793 PPSA_PYRFU 794 PPSA_STAMA 834 PT1A_ECOLI 711 PT1P_ECOLI 748 PT1P_SALTY 85 PT1_ALCEU 592 PT1_BACST 578 PT1_BACSU 550 PT1_ECOLI 575 PT1_ENTFA 29 PT1_HAEIN 575 PT1_MYCCA 573 PT1_SALTY 575 PT1_STACA 574 PT1_STRMU 577 PT1_STRSL 577 PTF1_RHOCA 827 PTF1_XANCP 837 Pratt run started at Thu Feb 6 20:39:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 23( 23) G-x(0,1)-G-x(2,3)-H-x(5)-R 2: 12.0102 48( 23) G-x(3,4)-H-x(5)-R 3: 12.0102 25( 23) G-x(2,3)-H-x(5)-R 4: 11.5102 55( 23) L-x(0,1)-E-x(2,3)-A 5: 11.5102 45( 23) A-x(0,2)-R-x-L 6: 11.5102 68( 23) A-x(2,3)-L-x(3,4)-A 7: 11.5102 60( 23) A-x(2)-A-x(1,3)-E 8: 11.5102 86( 23) A-x(2,3)-A-x(2,3)-L 9: 11.5102 50( 23) S-x(1,2)-A-x(1,2)-A 10: 11.0102 39( 23) S-x(0,1)-L-x(3,5)-A 11: 11.0102 72( 23) R-x(1,2)-L-x(3,5)-A 12: 11.0102 60( 23) R-x(1,3)-L-x(3,4)-A 13: 11.0102 60( 23) A-x(0,1)-R-x(0,2)-E 14: 11.0102 52( 23) A-x(0,2)-R-x(0,1)-S 15: 11.0102 64( 23) I-x(0,2)-R-x(1,2)-L 16: 11.0102 66( 23) S-x(0,2)-A-x(1,2)-A 17: 11.0102 43( 23) R-x(0,1)-S-x(2,4)-A 18: 11.0102 46( 23) R-x(4,5)-A-x(2,4)-R 19: 11.0102 50( 23) R-x(3,4)-A-x(2,4)-R 20: 11.0102 53( 23) R-x(3,4)-A-x(1,3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 27.8456 23( 23) G-x(0,1)-G-x(2,3)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] B 2: 25.2485 23( 23) G-x(0,1)-G-x(2,3)-H-x(2)-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] C 3: 24.1755 44( 23) G-x(3,4)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] D 4: 24.1755 23( 23) G-x(2,3)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] E 5: 22.4523 23( 23) G-x(0,1)-G-x(2,3)-H-x(4)-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] F 6: 21.5784 23( 23) G-x(2,3)-H-x(2)-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] G 7: 19.8589 23( 23) G-x(0,1)-G-x(2,3)-H-x(5)-R-x(2)-[ADEGN]-x-[ACPV] H 8: 18.7822 23( 23) G-x(2,3)-H-x(4)-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] I 9: 16.1889 23( 23) G-x(2,3)-H-x(5)-R-x(2)-[ADEGN]-x-[ACPV] J 10: 11.5102 23( 23) G-x(0,1)-G-x(2,3)-H K 11: 11.5102 55( 23) L-x(0,1)-E-x(2,3)-A L 12: 11.5102 45( 23) A-x(0,2)-R-x-L M 13: 11.5102 68( 23) A-x(2,3)-L-x(3,4)-A N 14: 11.5102 60( 23) A-x(2)-A-x(1,3)-E O 15: 11.5102 86( 23) A-x(2,3)-A-x(2,3)-L P 16: 11.5102 50( 23) S-x(1,2)-A-x(1,2)-A Q 17: 11.0102 39( 23) S-x(0,1)-L-x(3,5)-A R 18: 11.0102 72( 23) R-x(1,2)-L-x(3,5)-A S 19: 11.0102 60( 23) R-x(1,3)-L-x(3,4)-A T 20: 11.0102 60( 23) A-x(0,1)-R-x(0,2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 27.8456 23( 23) G-x(0,1)-G-x(2,3)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 449- 465: iltvr G-GmtsHaAVvARgmGtC cvsgc PODK_ENTHI : 449- 465: iltcr G-GktsHaAVvARgmGkP cvsga PODK_FLATR : 530- 546: iltar G-GmtsHaAVvARgwGkC cvsgc PODK_MAIZE : 524- 540: ilter G-GmtsHaAVvARwwGkC cvsgc PPSA_ECOLI : 417- 433: ivtnr G-GrtcHaAIiARelGiP avvgc PPSA_PYRFU : 407- 423: ivtde G-GrtsHaAIvSRelGiP cvlet PPSA_STAMA : 442- 458: ivtde G-GmtsHaAIvSRelGiP aivgt PT1A_ECOLI : 174- 190: lllks G-GttsHtVIlARsfNiP tlvgv PT1P_ECOLI : 683- 699: vaili GlGyr-HlSMnGRsvArA kyllr PT1P_SALTY : 20- 36: vaili GlGyr-HlSMnGRsvArV kyllr PT1_ALCEU : 196- 212: fvtdm G-GrtsHtAIvARslDiP aavgv PT1_BACST : 190- 206: fatdi G-GrtsHsAImARslEiP avvgt PT1_BACSU : 164- 180: fttdi G-GrtsHsAImARslEiP avvgt PT1_ECOLI : 184- 200: fitda G-GrtsHtSImARslElP aivgt PT1_ENTFA : 7- 23: fvtdi G-GrtsHsAImARslEiP aivgt PT1_HAEIN : 184- 200: vvtdi G-GrtsHtSImARslElP aivgt PT1_MYCCA : 185- 201: fltnv G-GrtsHaAImARslEiP ailgl PT1_SALTY : 184- 200: fitda G-GrtsHtSImARslElP aivgt PT1_STACA : 186- 202: fvtni G-GrtsHsAImSRslEiP avvgt PT1_STRMU : 186- 202: fvtni G-GrtsHsAImARtlEiA avlgt PT1_STRSL : 186- 202: fvtni G-GrtsHsAImARtlEiA avlgt PTF1_RHOCA : 452- 468: lataq G-GptsHtSIiARalDiP avagv PTF1_XANCP : 455- 471: lataq G-GptsHtAIlSRtlGlP alvaa B 2: 25.2485 23( 23) G-x(0,1)-G-x(2,3)-H-x(2)-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 449- 465: iltvr G-GmtsHaaVvARgmGtC cvsgc PODK_ENTHI : 449- 465: iltcr G-GktsHaaVvARgmGkP cvsga PODK_FLATR : 530- 546: iltar G-GmtsHaaVvARgwGkC cvsgc PODK_MAIZE : 524- 540: ilter G-GmtsHaaVvARwwGkC cvsgc PPSA_ECOLI : 417- 433: ivtnr G-GrtcHaaIiARelGiP avvgc PPSA_PYRFU : 407- 423: ivtde G-GrtsHaaIvSRelGiP cvlet PPSA_STAMA : 442- 458: ivtde G-GmtsHaaIvSRelGiP aivgt PT1A_ECOLI : 174- 190: lllks G-GttsHtvIlARsfNiP tlvgv PT1P_ECOLI : 683- 699: vaili GlGyr-HlsMnGRsvArA kyllr PT1P_SALTY : 20- 36: vaili GlGyr-HlsMnGRsvArV kyllr PT1_ALCEU : 196- 212: fvtdm G-GrtsHtaIvARslDiP aavgv PT1_BACST : 190- 206: fatdi G-GrtsHsaImARslEiP avvgt PT1_BACSU : 164- 180: fttdi G-GrtsHsaImARslEiP avvgt PT1_ECOLI : 184- 200: fitda G-GrtsHtsImARslElP aivgt PT1_ENTFA : 7- 23: fvtdi G-GrtsHsaImARslEiP aivgt PT1_HAEIN : 184- 200: vvtdi G-GrtsHtsImARslElP aivgt PT1_MYCCA : 185- 201: fltnv G-GrtsHaaImARslEiP ailgl PT1_SALTY : 184- 200: fitda G-GrtsHtsImARslElP aivgt PT1_STACA : 186- 202: fvtni G-GrtsHsaImSRslEiP avvgt PT1_STRMU : 186- 202: fvtni G-GrtsHsaImARtlEiA avlgt PT1_STRSL : 186- 202: fvtni G-GrtsHsaImARtlEiA avlgt PTF1_RHOCA : 452- 468: lataq G-GptsHtsIiARalDiP avagv PTF1_XANCP : 455- 471: lataq G-GptsHtaIlSRtlGlP alvaa C 3: 24.1755 44( 23) G-x(3,4)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 44(23) PODK_BACSY : 449- 465: iltvr GgmtsHaAVvARgmGtC cvsgc PODK_BACSY : 450- 465: ltvrg Gmts-HaAVvARgmGtC cvsgc PODK_ENTHI : 449- 465: iltcr GgktsHaAVvARgmGkP cvsga PODK_ENTHI : 450- 465: ltcrg Gkts-HaAVvARgmGkP cvsga PODK_FLATR : 530- 546: iltar GgmtsHaAVvARgwGkC cvsgc PODK_FLATR : 531- 546: ltarg Gmts-HaAVvARgwGkC cvsgc PODK_MAIZE : 524- 540: ilter GgmtsHaAVvARwwGkC cvsgc PODK_MAIZE : 525- 540: lterg Gmts-HaAVvARwwGkC cvsgc PPSA_ECOLI : 417- 433: ivtnr GgrtcHaAIiARelGiP avvgc PPSA_ECOLI : 418- 433: vtnrg Grtc-HaAIiARelGiP avvgc PPSA_PYRFU : 407- 423: ivtde GgrtsHaAIvSRelGiP cvlet PPSA_PYRFU : 408- 423: vtdeg Grts-HaAIvSRelGiP cvlet PPSA_STAMA : 442- 458: ivtde GgmtsHaAIvSRelGiP aivgt PPSA_STAMA : 443- 458: vtdeg Gmts-HaAIvSRelGiP aivgt PT1A_ECOLI : 174- 190: lllks GgttsHtVIlARsfNiP tlvgv PT1A_ECOLI : 175- 190: llksg Gtts-HtVIlARsfNiP tlvgv PT1P_ECOLI : 683- 699: vaili GlgyrHlSMnGRsvArA kyllr PT1P_SALTY : 20- 36: vaili GlgyrHlSMnGRsvArV kyllr PT1_ALCEU : 196- 212: fvtdm GgrtsHtAIvARslDiP aavgv PT1_ALCEU : 197- 212: vtdmg Grts-HtAIvARslDiP aavgv PT1_BACST : 190- 206: fatdi GgrtsHsAImARslEiP avvgt PT1_BACST : 191- 206: atdig Grts-HsAImARslEiP avvgt PT1_BACSU : 164- 180: fttdi GgrtsHsAImARslEiP avvgt PT1_BACSU : 165- 180: ttdig Grts-HsAImARslEiP avvgt PT1_ECOLI : 184- 200: fitda GgrtsHtSImARslElP aivgt PT1_ECOLI : 185- 200: itdag Grts-HtSImARslElP aivgt PT1_ENTFA : 7- 23: fvtdi GgrtsHsAImARslEiP aivgt PT1_ENTFA : 8- 23: vtdig Grts-HsAImARslEiP aivgt PT1_HAEIN : 184- 200: vvtdi GgrtsHtSImARslElP aivgt PT1_HAEIN : 185- 200: vtdig Grts-HtSImARslElP aivgt PT1_MYCCA : 185- 201: fltnv GgrtsHaAImARslEiP ailgl PT1_MYCCA : 186- 201: ltnvg Grts-HaAImARslEiP ailgl PT1_SALTY : 184- 200: fitda GgrtsHtSImARslElP aivgt PT1_SALTY : 185- 200: itdag Grts-HtSImARslElP aivgt PT1_STACA : 186- 202: fvtni GgrtsHsAImSRslEiP avvgt PT1_STACA : 187- 202: vtnig Grts-HsAImSRslEiP avvgt PT1_STRMU : 186- 202: fvtni GgrtsHsAImARtlEiA avlgt PT1_STRMU : 187- 202: vtnig Grts-HsAImARtlEiA avlgt PT1_STRSL : 186- 202: fvtni GgrtsHsAImARtlEiA avlgt PT1_STRSL : 187- 202: vtnig Grts-HsAImARtlEiA avlgt PTF1_RHOCA : 452- 468: lataq GgptsHtSIiARalDiP avagv PTF1_RHOCA : 453- 468: ataqg Gpts-HtSIiARalDiP avagv PTF1_XANCP : 455- 471: lataq GgptsHtAIlSRtlGlP alvaa PTF1_XANCP : 456- 471: ataqg Gpts-HtAIlSRtlGlP alvaa D 4: 24.1755 23( 23) G-x(2,3)-H-x-[ASV]-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 450- 465: ltvrg GmtsHaAVvARgmGtC cvsgc PODK_ENTHI : 450- 465: ltcrg GktsHaAVvARgmGkP cvsga PODK_FLATR : 531- 546: ltarg GmtsHaAVvARgwGkC cvsgc PODK_MAIZE : 525- 540: lterg GmtsHaAVvARwwGkC cvsgc PPSA_ECOLI : 418- 433: vtnrg GrtcHaAIiARelGiP avvgc PPSA_PYRFU : 408- 423: vtdeg GrtsHaAIvSRelGiP cvlet PPSA_STAMA : 443- 458: vtdeg GmtsHaAIvSRelGiP aivgt PT1A_ECOLI : 175- 190: llksg GttsHtVIlARsfNiP tlvgv PT1P_ECOLI : 685- 699: iligl Gyr-HlSMnGRsvArA kyllr PT1P_SALTY : 22- 36: iligl Gyr-HlSMnGRsvArV kyllr PT1_ALCEU : 197- 212: vtdmg GrtsHtAIvARslDiP aavgv PT1_BACST : 191- 206: atdig GrtsHsAImARslEiP avvgt PT1_BACSU : 165- 180: ttdig GrtsHsAImARslEiP avvgt PT1_ECOLI : 185- 200: itdag GrtsHtSImARslElP aivgt PT1_ENTFA : 8- 23: vtdig GrtsHsAImARslEiP aivgt PT1_HAEIN : 185- 200: vtdig GrtsHtSImARslElP aivgt PT1_MYCCA : 186- 201: ltnvg GrtsHaAImARslEiP ailgl PT1_SALTY : 185- 200: itdag GrtsHtSImARslElP aivgt PT1_STACA : 187- 202: vtnig GrtsHsAImSRslEiP avvgt PT1_STRMU : 187- 202: vtnig GrtsHsAImARtlEiA avlgt PT1_STRSL : 187- 202: vtnig GrtsHsAImARtlEiA avlgt PTF1_RHOCA : 453- 468: ataqg GptsHtSIiARalDiP avagv PTF1_XANCP : 456- 471: ataqg GptsHtAIlSRtlGlP alvaa E 5: 22.4523 23( 23) G-x(0,1)-G-x(2,3)-H-x(4)-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 449- 465: iltvr G-GmtsHaavvARgmGtC cvsgc PODK_ENTHI : 449- 465: iltcr G-GktsHaavvARgmGkP cvsga PODK_FLATR : 530- 546: iltar G-GmtsHaavvARgwGkC cvsgc PODK_MAIZE : 524- 540: ilter G-GmtsHaavvARwwGkC cvsgc PPSA_ECOLI : 417- 433: ivtnr G-GrtcHaaiiARelGiP avvgc PPSA_PYRFU : 407- 423: ivtde G-GrtsHaaivSRelGiP cvlet PPSA_STAMA : 442- 458: ivtde G-GmtsHaaivSRelGiP aivgt PT1A_ECOLI : 174- 190: lllks G-GttsHtvilARsfNiP tlvgv PT1P_ECOLI : 683- 699: vaili GlGyr-HlsmnGRsvArA kyllr PT1P_SALTY : 20- 36: vaili GlGyr-HlsmnGRsvArV kyllr PT1_ALCEU : 196- 212: fvtdm G-GrtsHtaivARslDiP aavgv PT1_BACST : 190- 206: fatdi G-GrtsHsaimARslEiP avvgt PT1_BACSU : 164- 180: fttdi G-GrtsHsaimARslEiP avvgt PT1_ECOLI : 184- 200: fitda G-GrtsHtsimARslElP aivgt PT1_ENTFA : 7- 23: fvtdi G-GrtsHsaimARslEiP aivgt PT1_HAEIN : 184- 200: vvtdi G-GrtsHtsimARslElP aivgt PT1_MYCCA : 185- 201: fltnv G-GrtsHaaimARslEiP ailgl PT1_SALTY : 184- 200: fitda G-GrtsHtsimARslElP aivgt PT1_STACA : 186- 202: fvtni G-GrtsHsaimSRslEiP avvgt PT1_STRMU : 186- 202: fvtni G-GrtsHsaimARtlEiA avlgt PT1_STRSL : 186- 202: fvtni G-GrtsHsaimARtlEiA avlgt PTF1_RHOCA : 452- 468: lataq G-GptsHtsiiARalDiP avagv PTF1_XANCP : 455- 471: lataq G-GptsHtailSRtlGlP alvaa F 6: 21.5784 23( 23) G-x(2,3)-H-x(2)-[IMV]-x-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 450- 465: ltvrg GmtsHaaVvARgmGtC cvsgc PODK_ENTHI : 450- 465: ltcrg GktsHaaVvARgmGkP cvsga PODK_FLATR : 531- 546: ltarg GmtsHaaVvARgwGkC cvsgc PODK_MAIZE : 525- 540: lterg GmtsHaaVvARwwGkC cvsgc PPSA_ECOLI : 418- 433: vtnrg GrtcHaaIiARelGiP avvgc PPSA_PYRFU : 408- 423: vtdeg GrtsHaaIvSRelGiP cvlet PPSA_STAMA : 443- 458: vtdeg GmtsHaaIvSRelGiP aivgt PT1A_ECOLI : 175- 190: llksg GttsHtvIlARsfNiP tlvgv PT1P_ECOLI : 685- 699: iligl Gyr-HlsMnGRsvArA kyllr PT1P_SALTY : 22- 36: iligl Gyr-HlsMnGRsvArV kyllr PT1_ALCEU : 197- 212: vtdmg GrtsHtaIvARslDiP aavgv PT1_BACST : 191- 206: atdig GrtsHsaImARslEiP avvgt PT1_BACSU : 165- 180: ttdig GrtsHsaImARslEiP avvgt PT1_ECOLI : 185- 200: itdag GrtsHtsImARslElP aivgt PT1_ENTFA : 8- 23: vtdig GrtsHsaImARslEiP aivgt PT1_HAEIN : 185- 200: vtdig GrtsHtsImARslElP aivgt PT1_MYCCA : 186- 201: ltnvg GrtsHaaImARslEiP ailgl PT1_SALTY : 185- 200: itdag GrtsHtsImARslElP aivgt PT1_STACA : 187- 202: vtnig GrtsHsaImSRslEiP avvgt PT1_STRMU : 187- 202: vtnig GrtsHsaImARtlEiA avlgt PT1_STRSL : 187- 202: vtnig GrtsHsaImARtlEiA avlgt PTF1_RHOCA : 453- 468: ataqg GptsHtsIiARalDiP avagv PTF1_XANCP : 456- 471: ataqg GptsHtaIlSRtlGlP alvaa G 7: 19.8589 23( 23) G-x(0,1)-G-x(2,3)-H-x(5)-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 449- 465: iltvr G-GmtsHaavvaRgmGtC cvsgc PODK_ENTHI : 449- 465: iltcr G-GktsHaavvaRgmGkP cvsga PODK_FLATR : 530- 546: iltar G-GmtsHaavvaRgwGkC cvsgc PODK_MAIZE : 524- 540: ilter G-GmtsHaavvaRwwGkC cvsgc PPSA_ECOLI : 417- 433: ivtnr G-GrtcHaaiiaRelGiP avvgc PPSA_PYRFU : 407- 423: ivtde G-GrtsHaaivsRelGiP cvlet PPSA_STAMA : 442- 458: ivtde G-GmtsHaaivsRelGiP aivgt PT1A_ECOLI : 174- 190: lllks G-GttsHtvilaRsfNiP tlvgv PT1P_ECOLI : 683- 699: vaili GlGyr-HlsmngRsvArA kyllr PT1P_SALTY : 20- 36: vaili GlGyr-HlsmngRsvArV kyllr PT1_ALCEU : 196- 212: fvtdm G-GrtsHtaivaRslDiP aavgv PT1_BACST : 190- 206: fatdi G-GrtsHsaimaRslEiP avvgt PT1_BACSU : 164- 180: fttdi G-GrtsHsaimaRslEiP avvgt PT1_ECOLI : 184- 200: fitda G-GrtsHtsimaRslElP aivgt PT1_ENTFA : 7- 23: fvtdi G-GrtsHsaimaRslEiP aivgt PT1_HAEIN : 184- 200: vvtdi G-GrtsHtsimaRslElP aivgt PT1_MYCCA : 185- 201: fltnv G-GrtsHaaimaRslEiP ailgl PT1_SALTY : 184- 200: fitda G-GrtsHtsimaRslElP aivgt PT1_STACA : 186- 202: fvtni G-GrtsHsaimsRslEiP avvgt PT1_STRMU : 186- 202: fvtni G-GrtsHsaimaRtlEiA avlgt PT1_STRSL : 186- 202: fvtni G-GrtsHsaimaRtlEiA avlgt PTF1_RHOCA : 452- 468: lataq G-GptsHtsiiaRalDiP avagv PTF1_XANCP : 455- 471: lataq G-GptsHtailsRtlGlP alvaa H 8: 18.7822 23( 23) G-x(2,3)-H-x(4)-[AGS]-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 450- 465: ltvrg GmtsHaavvARgmGtC cvsgc PODK_ENTHI : 450- 465: ltcrg GktsHaavvARgmGkP cvsga PODK_FLATR : 531- 546: ltarg GmtsHaavvARgwGkC cvsgc PODK_MAIZE : 525- 540: lterg GmtsHaavvARwwGkC cvsgc PPSA_ECOLI : 418- 433: vtnrg GrtcHaaiiARelGiP avvgc PPSA_PYRFU : 408- 423: vtdeg GrtsHaaivSRelGiP cvlet PPSA_STAMA : 443- 458: vtdeg GmtsHaaivSRelGiP aivgt PT1A_ECOLI : 175- 190: llksg GttsHtvilARsfNiP tlvgv PT1P_ECOLI : 685- 699: iligl Gyr-HlsmnGRsvArA kyllr PT1P_SALTY : 22- 36: iligl Gyr-HlsmnGRsvArV kyllr PT1_ALCEU : 197- 212: vtdmg GrtsHtaivARslDiP aavgv PT1_BACST : 191- 206: atdig GrtsHsaimARslEiP avvgt PT1_BACSU : 165- 180: ttdig GrtsHsaimARslEiP avvgt PT1_ECOLI : 185- 200: itdag GrtsHtsimARslElP aivgt PT1_ENTFA : 8- 23: vtdig GrtsHsaimARslEiP aivgt PT1_HAEIN : 185- 200: vtdig GrtsHtsimARslElP aivgt PT1_MYCCA : 186- 201: ltnvg GrtsHaaimARslEiP ailgl PT1_SALTY : 185- 200: itdag GrtsHtsimARslElP aivgt PT1_STACA : 187- 202: vtnig GrtsHsaimSRslEiP avvgt PT1_STRMU : 187- 202: vtnig GrtsHsaimARtlEiA avlgt PT1_STRSL : 187- 202: vtnig GrtsHsaimARtlEiA avlgt PTF1_RHOCA : 453- 468: ataqg GptsHtsiiARalDiP avagv PTF1_XANCP : 456- 471: ataqg GptsHtailSRtlGlP alvaa I 9: 16.1889 23( 23) G-x(2,3)-H-x(5)-R-x(2)-[ADEGN]-x-[ACPV] Occurences: 23(23) PODK_BACSY : 450- 465: ltvrg GmtsHaavvaRgmGtC cvsgc PODK_ENTHI : 450- 465: ltcrg GktsHaavvaRgmGkP cvsga PODK_FLATR : 531- 546: ltarg GmtsHaavvaRgwGkC cvsgc PODK_MAIZE : 525- 540: lterg GmtsHaavvaRwwGkC cvsgc PPSA_ECOLI : 418- 433: vtnrg GrtcHaaiiaRelGiP avvgc PPSA_PYRFU : 408- 423: vtdeg GrtsHaaivsRelGiP cvlet PPSA_STAMA : 443- 458: vtdeg GmtsHaaivsRelGiP aivgt PT1A_ECOLI : 175- 190: llksg GttsHtvilaRsfNiP tlvgv PT1P_ECOLI : 685- 699: iligl Gyr-HlsmngRsvArA kyllr PT1P_SALTY : 22- 36: iligl Gyr-HlsmngRsvArV kyllr PT1_ALCEU : 197- 212: vtdmg GrtsHtaivaRslDiP aavgv PT1_BACST : 191- 206: atdig GrtsHsaimaRslEiP avvgt PT1_BACSU : 165- 180: ttdig GrtsHsaimaRslEiP avvgt PT1_ECOLI : 185- 200: itdag GrtsHtsimaRslElP aivgt PT1_ENTFA : 8- 23: vtdig GrtsHsaimaRslEiP aivgt PT1_HAEIN : 185- 200: vtdig GrtsHtsimaRslElP aivgt PT1_MYCCA : 186- 201: ltnvg GrtsHaaimaRslEiP ailgl PT1_SALTY : 185- 200: itdag GrtsHtsimaRslElP aivgt PT1_STACA : 187- 202: vtnig GrtsHsaimsRslEiP avvgt PT1_STRMU : 187- 202: vtnig GrtsHsaimaRtlEiA avlgt PT1_STRSL : 187- 202: vtnig GrtsHsaimaRtlEiA avlgt PTF1_RHOCA : 453- 468: ataqg GptsHtsiiaRalDiP avagv PTF1_XANCP : 456- 471: ataqg GptsHtailsRtlGlP alvaa J 10: 11.5102 23( 23) G-x(0,1)-G-x(2,3)-H Occurences: 23(23) PODK_BACSY : 449- 454: iltvr G-GmtsH aavva PODK_ENTHI : 449- 454: iltcr G-GktsH aavva PODK_FLATR : 530- 535: iltar G-GmtsH aavva PODK_MAIZE : 524- 529: ilter G-GmtsH aavva PPSA_ECOLI : 417- 422: ivtnr G-GrtcH aaiia PPSA_PYRFU : 407- 412: ivtde G-GrtsH aaivs PPSA_STAMA : 442- 447: ivtde G-GmtsH aaivs PT1A_ECOLI : 174- 179: lllks G-GttsH tvila PT1P_ECOLI : 683- 688: vaili GlGyr-H lsmng PT1P_SALTY : 20- 25: vaili GlGyr-H lsmng PT1_ALCEU : 196- 201: fvtdm G-GrtsH taiva PT1_BACST : 190- 195: fatdi G-GrtsH saima PT1_BACSU : 164- 169: fttdi G-GrtsH saima PT1_ECOLI : 184- 189: fitda G-GrtsH tsima PT1_ENTFA : 7- 12: fvtdi G-GrtsH saima PT1_HAEIN : 184- 189: vvtdi G-GrtsH tsima PT1_MYCCA : 185- 190: fltnv G-GrtsH aaima PT1_SALTY : 184- 189: fitda G-GrtsH tsima PT1_STACA : 186- 191: fvtni G-GrtsH saims PT1_STRMU : 186- 191: fvtni G-GrtsH saima PT1_STRSL : 186- 191: fvtni G-GrtsH saima PTF1_RHOCA : 452- 457: lataq G-GptsH tsiia PTF1_XANCP : 455- 460: lataq G-GptsH tails K 11: 11.5102 55( 23) L-x(0,1)-E-x(2,3)-A Occurences: 55(23) PODK_BACSY : 178- 184: ddlke LaEkfkA vykea PODK_BACSY : 644- 649: nmglt LaEvk-A kvdel PODK_ENTHI : 550- 554: aakka L-Efg-A egigl PODK_FLATR : 237- 242: lfdek L-EqmkA ekgih PODK_MAIZE : 432- 438: mvneg LvEprsA ikmve PODK_MAIZE : 753- 758: isype LtEmq-A raife PPSA_ECOLI : 560- 565: fyvgr LtEgi-A tlgaa PPSA_ECOLI : 625- 629: rdcfa L-Ece-A vkrvr PPSA_PYRFU : 27- 33: gkgan LgEmtnA gilge PPSA_PYRFU : 78- 84: ddskm LqEnteA irtli PPSA_PYRFU : 131- 137: ataed LpEasfA gqqet PPSA_PYRFU : 332- 338: rpitt LkEeatA eeaee PPSA_PYRFU : 426- 431: gipcv L-EtkeA tkklk PPSA_PYRFU : 534- 539: gkeee LvEkl-A egiek PPSA_STAMA : 32- 38: gknan LgEmirA gipvp PPSA_STAMA : 81- 86: ndkkv LdEtt-A kirqw PPSA_STAMA : 529- 534: kiymn LgEpd-A iekyk PPSA_STAMA : 579- 584: lfidk LaEgi-A kvaqa PPSA_STAMA : 644- 648: epafr L-Evr-A ikkvr PT1A_ECOLI : 75- 81: agdts LrEhllA gvsag PT1P_ECOLI : 216- 220: rltga L-Eea-A nefrr PT1P_ECOLI : 562- 568: pmvts LdEvdeA rrlie PT1P_ECOLI : 719- 724: laqrs L-EaqlA tevrh PT1P_SALTY : 56- 61: larrs L-EaqmA tevrh PT1_ALCEU : 428- 434: kakrq LdErgeA ydpgm PT1_BACST : 49- 54: aeiar L-EaavA kakee PT1_BACST : 71- 76: halek LgEdk-A aifaa PT1_BACST : 71- 77: halek LgEdkaA ifaah PT1_BACST : 203- 207: imars L-Eip-A vvgtk PT1_BACST : 402- 408: pmiat LdEfrqA kaill PT1_BACST : 412- 418: qakai LlEekeA llrqg PT1_BACST : 413- 418: akail LeEke-A llrqg PT1_BACST : 413- 418: akail L-EekeA llrqg PT1_BACSU : 177- 181: imars L-Eip-A vvgtk PT1_ECOLI : 123- 128: lddey LkEra-A dvrdi PT1_ECOLI : 197- 201: imars L-Elp-A ivgtg PT1_ECOLI : 548- 554: edakv LaEqalA qpttd PT1_ENTFA : 20- 24: imars L-Eip-A ivgtk PT1_HAEIN : 65- 70: ralis LgEek-A aifeg PT1_HAEIN : 65- 71: ralis LgEekaA ifegh PT1_HAEIN : 197- 201: imars L-Elp-A ivgtn PT1_MYCCA : 66- 71: itlkk LgEek-A aifda PT1_MYCCA : 66- 72: itlkk LgEekaA ifdah PT1_MYCCA : 198- 202: imars L-Eip-A ilglk PT1_SALTY : 123- 128: lddey LkEra-A dvrdi PT1_SALTY : 197- 201: imars L-Elp-A ivgtg PT1_SALTY : 548- 554: edakv LaEqalA qpttd PT1_STACA : 199- 203: imsrs L-Eip-A vvgtk PT1_STRMU : 66- 71: kavdt LgEea-A avfda PT1_STRMU : 66- 72: kavdt LgEeaaA vfdah PT1_STRMU : 199- 203: imart L-Eia-A vlgtn PT1_STRMU : 400- 406: pmval LnEfrkA kgile PT1_STRMU : 410- 415: kakgi LeEek-A nlkae PT1_STRMU : 410- 415: kakgi L-EeekA nlkae PT1_STRSL : 66- 71: kaves LgEea-A avfda PT1_STRSL : 66- 72: kaves LgEeaaA vfdah PT1_STRSL : 199- 203: imart L-Eia-A vlgtn PT1_STRSL : 400- 406: pmval LtEfrtA kgile PT1_STRSL : 410- 415: takgi LeEek-A klvae PT1_STRSL : 410- 415: takgi L-EeekA klvae PTF1_RHOCA : 679- 683: aeevr L-Evg-A apvei PTF1_RHOCA : 679- 684: aeevr L-EvgaA pveig PTF1_XANCP : 548- 553: ganvn LpEqv-A maltq PTF1_XANCP : 673- 678: pelis LrEic-A airae PTF1_XANCP : 673- 679: pelis LrEicaA irael L 12: 11.5102 45( 23) A-x(0,2)-R-x-L Occurences: 45(23) PODK_BACSY : 12- 17: feegn AsmRnL lggkg PODK_ENTHI : 295- 300: iiskm AedRdL pgcye PODK_FLATR : 611- 614: swadq A--RrL kvman PODK_MAIZE : 665- 670: elrqq AldRlL tyqrs PPSA_ECOLI : 427- 430: haaii A--ReL gipav PPSA_PYRFU : 84- 88: qente Ai-RtL iksld PPSA_PYRFU : 736- 739: sdpkm A--RiL vrlgi PPSA_STAMA : 803- 807: pdavi At-RrL vasie PT1A_ECOLI : 65- 69: saile Ah-RsL agdts PT1A_ECOLI : 470- 475: nslnp AflRaL dyavq PT1P_ECOLI : 54- 58: cyylm At-RgL kkprg PT1P_ECOLI : 568- 571: devde A--RrL ierag PT1P_ECOLI : 646- 651: dslhp AmlRaL amiar PT1P_ECOLI : 715- 719: eaenl Aq-RsL eaqla PT1P_SALTY : 52- 56: daqtl Ar-RsL eaqma PT1_ALCEU : 59- 64: raela AlkRdL prdap PT1_ALCEU : 206- 209: htaiv A--RsL dipaa PT1_ALCEU : 424- 428: aliak Ak-RqL derge PT1_ALCEU : 577- 580: dpeeq A--RpL rswhd PT1_BACST : 200- 203: hsaim A--RsL eipav PT1_BACSU : 174- 177: hsaim A--RsL eipav PT1_ECOLI : 194- 197: htsim A--RsL elpai PT1_ECOLI : 439- 442: aaati A--RhL akevd PT1_ENTFA : 17- 20: hsaim A--RsL eipai PT1_HAEIN : 194- 197: htsim A--RsL elpai PT1_MYCCA : 17- 20: egisl A--RaL viket PT1_MYCCA : 195- 198: haaim A--RsL eipai PT1_MYCCA : 533- 536: tsvlk A--RsL mskie PT1_SALTY : 194- 197: htsim A--RsL elpai PT1_SALTY : 439- 442: aaati A--RhL akevd PT1_STACA : 535- 538: tsilk A--RvL irsln PT1_STRMU : 136- 140: dirdv Ak-RvL ahllg PT1_STRMU : 196- 199: hsaim A--RtL eiaav PT1_STRMU : 553- 557: kmqel Aq-RaL tecat PT1_STRSL : 196- 199: hsaim A--RtL eiaav PT1_STRSL : 553- 557: kmeey An-RaL tecst PTF1_RHOCA : 401- 406: idlrd AgqRvL qhlgr PTF1_RHOCA : 442- 447: arldp AlvRgL ataqg PTF1_RHOCA : 462- 465: htsii A--RaL dipav PTF1_RHOCA : 516- 520: maalt Aq-ReL earer PTF1_RHOCA : 805- 810: rhsam AenRdL arral PTF1_RHOCA : 811- 815: enrdl Ar-RaL actta PTF1_RHOCA : 821- 826: actta AevRgL k PTF1_XANCP : 525- 530: irere AaqRaL paett PTF1_XANCP : 526- 530: rerea Aq-RaL paett M 13: 11.5102 68( 23) A-x(2,3)-L-x(3,4)-A Occurences: 68(23) PODK_BACSY : 172- 179: dtdlt Add-Lkel-A ekfka PODK_ENTHI : 538- 546: kigvf AagdLpsa-A kkale PODK_ENTHI : 539- 546: igvfa Agd-Lpsa-A kkale PODK_ENTHI : 546- 554: dlpsa AkkaLefg-A egigl PODK_FLATR : 611- 618: swadq Arr-Lkvm-A nadtp PODK_MAIZE : 367- 375: pedld AmknLmpq-A ydelv PPSA_ECOLI : 427- 434: haaii Are-Lgip-A vvgcg PPSA_ECOLI : 730- 738: dernd AvkaLlsm-A iraak PPSA_PYRFU : 347- 356: eevee AeviLkglgA spgig PPSA_STAMA : 641- 648: pkyep Afr-Levr-A ikkvr PT1A_ECOLI : 138- 146: eqrfp ApgkLtqp-A icmad PT1A_ECOLI : 341- 349: nipae AnpfLgyr-A vriye PT1P_ECOLI : 568- 575: devde Arr-Lier-A greve PT1P_ECOLI : 715- 724: eaenl AqrsLeaqlA tevrh PT1P_SALTY : 52- 61: daqtl ArrsLeaqmA tevrh PT1_ALCEU : 19- 26: vaigr Ahl-Lapa-A ldvsh PT1_ALCEU : 80- 87: fldvh Ami-Ldde-A larep PT1_ALCEU : 206- 213: htaiv Ars-Ldip-A avgvq PT1_ALCEU : 206- 214: htaiv Ars-LdipaA vgvqs PT1_ALCEU : 293- 301: emaed AgaaLaag-A vgvgl PT1_BACST : 67- 76: aikqh AlekLgedkA aifaa PT1_BACST : 106- 114: tervn AeyaLdet-A lffis PT1_BACST : 200- 207: hsaim Ars-Leip-A vvgtk PT1_BACST : 410- 418: frqak Ail-LeekeA llrqg PT1_BACST : 533- 541: efsms AtsiLpar-A qlkkl PT1_BACST : 539- 547: tsilp AraqLkkl-A keeaa PT1_BACSU : 174- 181: hsaim Ars-Leip-A vvgtk PT1_ECOLI : 194- 201: htsim Ars-Lelp-A ivgtg PT1_ECOLI : 545- 552: tnfed Akv-Laeq-A laqpt PT1_ENTFA : 17- 24: hsaim Ars-Leip-A ivgtk PT1_HAEIN : 61- 70: sirer AlisLgeekA aifeg PT1_HAEIN : 194- 201: htsim Ars-Lelp-A ivgtn PT1_HAEIN : 545- 552: vnfqd Akv-Ladt-A lqkpt PT1_HAEIN : 549- 558: dakvl AdtaLqkptA aeidq PT1_MYCCA : 195- 202: haaim Ars-Leip-A ilglk PT1_MYCCA : 435- 443: veips Aai-LadqfA kyadf PT1_SALTY : 194- 201: htsim Ars-Lelp-A ivgtg PT1_SALTY : 545- 552: tnfed Akv-Laeq-A laqpt PT1_STACA : 62- 71: kirnn AekqLgadkA aifda PT1_STRMU : 62- 70: lirqk AvdtLgee-A aavfd PT1_STRMU : 62- 71: lirqk AvdtLgeeaA avfda PT1_STRMU : 196- 203: hsaim Art-Leia-A vlgtn PT1_STRMU : 253- 261: yakqk AewaLlkd-A etvta PT1_STRMU : 406- 415: nefrk AkgiLeeekA nlkae PT1_STRMU : 438- 447: mieip AaamLadqfA kevdf PT1_STRMU : 439- 447: ieipa Aam-LadqfA kevdf PT1_STRMU : 553- 561: kmqel AqraLtec-A tmeev PT1_STRSL : 62- 70: virek AvesLgee-A aavfd PT1_STRSL : 62- 71: virek AvesLgeeaA avfda PT1_STRSL : 196- 203: hsaim Art-Leia-A vlgtn PT1_STRSL : 253- 261: yakqk AewaLlkd-A qtvta PT1_STRSL : 406- 415: tefrt AkgiLeeekA klvae PT1_STRSL : 438- 447: mieip AaamLadqfA kevdf PT1_STRSL : 439- 447: ieipa Aam-LadqfA kevdf PTF1_RHOCA : 25- 32: daiaq Avd-Llta-A gkidp PTF1_RHOCA : 50- 59: greav AntfLgngiA iphgl PTF1_RHOCA : 167- 175: vvvtg Ahg-LharpA ttlvd PTF1_RHOCA : 175- 182: lharp Att-Lvdl-A kgfaa PTF1_RHOCA : 226- 234: aegad AtaaLaai-A aafea PTF1_RHOCA : 226- 235: aegad AtaaLaaiaA afeag PTF1_RHOCA : 255- 264: aapea AtpgLtgagA smasy PTF1_RHOCA : 462- 469: htsii Ara-Ldip-A vagvg PTF1_RHOCA : 811- 820: enrdl ArraLacttA aevrg PTF1_XANCP : 30- 37: daiaq Aaq-Llva-A gcvap PTF1_XANCP : 55- 64: rregl AntfLghglA iphgv PTF1_XANCP : 230- 239: akgsd ApalLkrlrA vmdsl PTF1_XANCP : 544- 553: hidig AnvnLpeqvA maltq PTF1_XANCP : 553- 560: lpeqv Ama-Ltqg-A nvglm PTF1_XANCP : 704- 711: aaaaq Adv-Larh-A dffsi PTF1_XANCP : 806- 814: rlrgr AlsaLqql-A eqalh PTF1_XANCP : 809- 817: grals AlqqLaeq-A lhcet PTF1_XANCP : 814- 823: alqql AeqaLhcetA eqvra N 14: 11.5102 60( 23) A-x(2)-A-x(1,3)-E Occurences: 60(23) PODK_BACSY : 384- 389: tfnpa AlkAg--E vigsa PODK_BACSY : 413- 418: ftade AkaAh--E kgerv PODK_ENTHI : 143- 149: lfgki AlnAcd-E vydkt PODK_ENTHI : 411- 416: avvfd AddAv--E qakgk PODK_ENTHI : 546- 551: dlpsa AkkAl--E fgaeg PODK_FLATR : 832- 837: eipra AliAe--E igkea PODK_MAIZE : 826- 831: eipra AlvAd--E iaeqa PPSA_ECOLI : 138- 145: edmpd AsfAgqqE tflnv PPSA_ECOLI : 304- 311: evqel AkqAvqiE khygr PPSA_ECOLI : 424- 429: rtcha AiiAr--E lgipa PPSA_PYRFU : 134- 141: edlpe AsfAgqqE tyldv PPSA_PYRFU : 338- 343: keeat AeeAe--E veeae PPSA_PYRFU : 338- 345: keeat AeeAeevE eaevi PPSA_STAMA : 313- 320: evkrl AelAlliE khygr PT1A_ECOLI : 58- 64: ldsdg AtsAil-E ahrsl PT1A_ECOLI : 263- 270: rieia AniAhsvE aqaaf PT1P_ECOLI : 231- 237: yskrf AagAqk-E taaif PT1P_ECOLI : 652- 657: mlral AmiAr--E aeihg PT1P_ECOLI : 652- 659: mlral AmiAreaE ihgid PT1P_ECOLI : 721- 726: qrsle AqlAt--E vrhqv PT1P_SALTY : 58- 63: rrsle AqmAt--E vrhqv PT1_ALCEU : 49- 56: erlra AraAvraE laalk PT1_ALCEU : 157- 163: papvp AlaAdg-E aatgv PT1_BACST : 44- 50: vadve AeiArl-E aavak PT1_BACST : 51- 58: iarle AavAkakE eleai PT1_BACST : 106- 112: tervn AeyAld-E talff PT1_BACST : 197- 204: rtshs AimArslE ipavv PT1_BACSU : 80- 86: tdsvn AefAlk-E tssmf PT1_BACSU : 171- 178: rtshs AimArslE ipavv PT1_BACSU : 225- 232: eekhn AylAqkaE waklv PT1_ECOLI : 100- 106: dkhmt AdaAah-E viegq PT1_ECOLI : 316- 322: eeqfa AykAva-E acgsq PT1_ENTFA : 14- 21: rtshs AimArslE ipaiv PT1_HAEIN : 38- 45: ddqid AevArfyE grnaa PT1_HAEIN : 241- 248: idelk AleAkisE ekael PT1_MYCCA : 192- 199: rtsha AimArslE ipail PT1_SALTY : 100- 106: dkhmt AdaAah-E viegq PT1_SALTY : 316- 322: eeqfa AykAva-E acgsq PT1_STACA : 318- 324: eeqfe AykAvl-E amkgk PT1_STRMU : 47- 54: arlda AleAsqnE lslir PT1_STRMU : 101- 107: tkevn AesAlk-E vtdmf PT1_STRMU : 193- 200: rtshs AimArtlE iaavl PT1_STRMU : 318- 324: deqye AykAvl-E gmngk PT1_STRMU : 553- 559: kmqel AqrAlt-E catme PT1_STRSL : 47- 54: arlda AlaAsqdE lsvir PT1_STRSL : 101- 107: akqvn AeaAlt-E vtdmf PT1_STRSL : 193- 200: rtshs AimArtlE iaavl PT1_STRSL : 318- 324: ddqye AykAvl-E gmngk PT1_STRSL : 553- 559: kmeey AnrAlt-E cstme PTF1_RHOCA : 98- 105: arlvv AiaAksdE hlqvl PTF1_RHOCA : 144- 151: ltgaa ApvAapaE tpadf PTF1_RHOCA : 231- 238: ataal AaiAaafE agled PTF1_RHOCA : 232- 238: taala AiaAaf-E agled PTF1_RHOCA : 236- 242: aaiaa AfeAgl-E deedt PTF1_RHOCA : 264- 270: ltgag AsmAsy-E grtlv PTF1_RHOCA : 302- 308: vfdtd AadAaf-E tdrld PTF1_RHOCA : 303- 308: fdtda AdaAf--E tdrld PTF1_RHOCA : 502- 508: vapte AdkAra-E tamaa PTF1_RHOCA : 513- 519: etama AltAqr-E leare PTF1_XANCP : 526- 533: rerea AqrAlpaE ttdgh PTF1_XANCP : 814- 821: alqql AeqAlhcE taeqv PTF1_XANCP : 828- 834: aeqvr AleAqr-E gqa O 15: 11.5102 86( 23) A-x(2,3)-A-x(2,3)-L Occurences: 86(23) PODK_BACSY : 345- 352: rtapa AlqiAcd-L vdegm PODK_BACSY : 585- 593: sdsve AreeAlneL ipfqk PODK_ENTHI : 385- 392: hknmp Any-AeapL vkglp PODK_FLATR : 608- 614: ifmsw Adq-Arr-L kvman PODK_MAIZE : 103- 110: kganl Aem-AsigL svppg PODK_MAIZE : 918- 925: epssv Aff-AkagL dfvsc PODK_MAIZE : 938- 946: frvpi ArlaAaqvL v PPSA_ECOLI : 107- 115: pelen AireAyaqL sadde PPSA_ECOLI : 423- 430: grtch AaiiAre-L gipav PPSA_ECOLI : 424- 430: rtcha Aii-Are-L gipav PPSA_ECOLI : 686- 693: eipsn All-AeqfL eyfdg PPSA_PYRFU : 749- 756: idsis AnpdAvq-L irqvv PPSA_STAMA : 800- 807: svnpd Avi-AtrrL vasie PT1A_ECOLI : 61- 69: dgats AileAhrsL agdts PT1A_ECOLI : 146- 153: kltqp AicmAde-L tpsqf PT1A_ECOLI : 696- 704: alvna AsadAiasL lqhel PT1A_ECOLI : 698- 705: vnaas AdaiAsl-L qhele PT1P_ECOLI : 147- 154: flvtl AtqmAai-L sqsql PT1P_ECOLI : 545- 552: ramlr Ana-AtgnL nillp PT1P_ECOLI : 711- 719: idyae AenlAqrsL eaqla PT1P_SALTY : 48- 56: idfed AqtlArrsL eaqma PT1_ALCEU : 15- 22: vsrgv AigrAhl-L apaal PT1_ALCEU : 19- 27: vaigr AhllApaaL dvshy PT1_ALCEU : 143- 150: erilk AlagApv-L vpapv PT1_ALCEU : 203- 209: rtsht Aiv-Ars-L dipaa PT1_ALCEU : 290- 297: aniem Aed-AgaaL aagav PT1_ALCEU : 333- 340: qayrg Avd-AmhgL pvtir PT1_ALCEU : 365- 372: defet AlnpAlg-L rairw PT1_ALCEU : 481- 488: laidr Adn-AvahL fdplh PT1_BACST : 20- 27: assgi AiakAyr-L etpdl PT1_BACST : 52- 60: arlea AvakAkeeL eaikq PT1_BACST : 76- 83: lgedk AaifAah-L lvldd PT1_BACST : 76- 84: lgedk AaifAahlL vlddp PT1_BACST : 77- 83: gedka Aif-Aah-L lvldd PT1_BACST : 77- 84: gedka AifaAhl-L vlddp PT1_BACST : 77- 84: gedka Aif-AahlL vlddp PT1_BACST : 197- 203: rtshs Aim-Ars-L eipav PT1_BACSU : 14- 21: asagi AiakAyr-L eepdl PT1_BACSU : 171- 177: rtshs Aim-Ars-L eipav PT1_ECOLI : 12- 19: aspgi AfgkAll-L kedei PT1_ECOLI : 435- 442: vetpa AatiArh-L akevd PT1_ECOLI : 436- 442: etpaa Ati-Arh-L akevd PT1_ECOLI : 545- 553: tnfed AkvlAeqaL aqptt PT1_ENTFA : 14- 20: rtshs Aim-Ars-L eipai PT1_HAEIN : 12- 19: aspgi AfgkAlv-L keeki PT1_HAEIN : 100- 108: snkvn AgvaAskiL dqqvt PT1_HAEIN : 435- 442: vetps AavnAkf-L akevd PT1_HAEIN : 436- 442: etpsa Avn-Akf-L akevd PT1_HAEIN : 545- 553: vnfqd AkvlAdtaL qkpta PT1_MYCCA : 191- 198: grtsh AaimArs-L eipai PT1_MYCCA : 192- 198: rtsha Aim-Ars-L eipai PT1_MYCCA : 545- 553: iefsk AkilAnkvL ecetn PT1_SALTY : 12- 19: aspgi AfgkAll-L kedei PT1_SALTY : 435- 442: vetpa AatiArh-L akevd PT1_SALTY : 436- 442: etpaa Ati-Arh-L akevd PT1_SALTY : 545- 553: tnfed AkvlAeqaL aqptt PT1_STACA : 15- 22: asdgv AiakAyl-L vepdl PT1_STACA : 72- 79: gadka AifdAhl-L vledp PT1_STRMU : 15- 22: asdgv AvakAyl-L vqpdl PT1_STRMU : 193- 199: rtshs Aim-Art-L eiaav PT1_STRMU : 249- 257: agety AkqkAewaL lkdae PT1_STRSL : 15- 22: asdgv AvakAyl-L vqpdl PT1_STRSL : 193- 199: rtshs Aim-Art-L eiaav PT1_STRSL : 249- 257: ageay AkqkAewaL lkdaq PTF1_RHOCA : 21- 28: tdkad AiaqAvd-L ltaag PTF1_RHOCA : 21- 29: tdkad AiaqAvdlL taagk PTF1_RHOCA : 123- 130: gdeae AerlAtt-L daavi PTF1_RHOCA : 172- 178: ahglh Arp-Att-L vdlak PTF1_RHOCA : 251- 259: dtgaa ApeaAtpgL tgaga PTF1_RHOCA : 315- 323: drldt AlqtAwheL eelhd PTF1_RHOCA : 507- 514: adkar Aet-AmaaL taqre PTF1_RHOCA : 512- 520: aetam AaltAqreL earer PTF1_RHOCA : 513- 520: etama Alt-AqreL earer PTF1_RHOCA : 583- 589: edeql Aiy-Aam-L salng PTF1_RHOCA : 587- 595: laiya AmlsAlngL piiir PTF1_RHOCA : 697- 704: ieips AvmmApe-L akrvd PTF1_RHOCA : 733- 739: mhpvl Akq-Adg-L hpavl PTF1_XANCP : 26- 33: rdkdd AiaqAaq-L lvaag PTF1_XANCP : 26- 34: rdkdd AiaqAaqlL vaagc PTF1_XANCP : 28- 34: kddai Aqa-Aql-L vaagc PTF1_XANCP : 154- 160: apdts Aap-Atd-L aerfe PTF1_XANCP : 201- 207: ragdq Aad-Aks-L vgllq PTF1_XANCP : 341- 349: gasda AifkAqaeL lndtd PTF1_XANCP : 393- 399: gnpvl Agr-Aad-L rdvgr PTF1_XANCP : 412- 419: laqld Aaa-AgagL tdlpe PTF1_XANCP : 472- 480: tlglp AlvaAggqL ldied PTF1_XANCP : 682- 689: caair AelhApe-L pigim PTF1_XANCP : 700- 707: ievpa AaaqAdv-L arhad PTF1_XANCP : 701- 707: evpaa Aaq-Adv-L arhad PTF1_XANCP : 736- 742: qnpel Aae-Ass-L hpavl PTF1_XANCP : 806- 813: rlrgr Als-AlqqL aeqal P 16: 11.5102 50( 23) S-x(1,2)-A-x(1,2)-A Occurences: 50(23) PODK_BACSY : 92- 96: lvsvr Sa-Ar-A smpgm PODK_BACSY : 398- 403: salpa SpgAa-A gkvyf PODK_BACSY : 453- 459: rggmt ShaAvvA rgmgt PODK_ENTHI : 453- 459: rggkt ShaAvvA rgmgk PODK_ENTHI : 544- 549: agdlp Sa-AkkA lefga PODK_FLATR : 205- 210: glagk Sg-ArfA ydsyr PODK_FLATR : 534- 540: rggmt ShaAvvA rgwgk PODK_FLATR : 606- 611: leifm Sw-AdqA rrlkv PODK_MAIZE : 528- 534: rggmt ShaAvvA rwwgk PODK_MAIZE : 915- 921: hggep SsvAffA kagld PODK_MAIZE : 916- 921: ggeps Sv-AffA kagld PPSA_ECOLI : 128- 132: sfavr Ss-At-A edmpd PPSA_ECOLI : 684- 689: mceip Sn-AllA eqfle PPSA_ECOLI : 736- 741: vkall Sm-AirA akkqg PPSA_PYRFU : 124- 128: yvavr Ss-At-A edlpe PPSA_STAMA : 129- 133: rvavr Ss-At-A edmpe PT1A_ECOLI : 55- 61: frlld SdgAtsA ileah PT1A_ECOLI : 88- 92: vsagl Sc-Ae-A ivasa PT1A_ECOLI : 268- 273: aniah SveAq-A afgng PT1A_ECOLI : 268- 274: aniah SveAqaA fgnga PT1A_ECOLI : 519- 525: smsap SipAakA rmaql PT1A_ECOLI : 697- 702: lvnaa SadAi-A sllqh PT1P_ECOLI : 266- 271: evdkg Sv-AewA vktvi PT1P_ECOLI : 695- 699: smngr Sv-Ar-A kyllr PT1P_ECOLI : 718- 724: nlaqr SleAqlA tevrh PT1P_SALTY : 55- 61: tlarr SleAqmA tevrh PT1_ALCEU : 200- 206: mggrt ShtAivA rsldi PT1_BACST : 17- 22: giaas SgiAi-A kayrl PT1_BACST : 194- 200: iggrt ShsAimA rslei PT1_BACSU : 77- 83: kistd SvnAefA lkets PT1_BACSU : 168- 174: iggrt ShsAimA rslei PT1_BACSU : 414- 419: mveip St-AviA dqfak PT1_ECOLI : 45- 50: verfl SgrAk-A saqle PT1_ECOLI : 248- 254: qeqva SekAelA klkdl PT1_ENTFA : 11- 17: iggrt ShsAimA rslei PT1_HAEIN : 434- 439: mvetp Sa-AvnA kflak PT1_MYCCA : 15- 19: asegi Sl-Ar-A lvike PT1_MYCCA : 189- 195: vggrt ShaAimA rslei PT1_MYCCA : 434- 439: mveip Sa-AilA dqfak PT1_SALTY : 45- 50: verfl SgrAk-A saqle PT1_STACA : 98- 104: kikne SvnAaqA ltdvs PT1_STACA : 436- 441: mveip StaAl-A difak PT1_STACA : 436- 441: mveip St-AalA difak PT1_STRMU : 190- 196: iggrt ShsAimA rtlei PT1_STRSL : 190- 196: iggrt ShsAimA rtlei PTF1_RHOCA : 334- 339: evwkt SgpAr-A aifra PTF1_RHOCA : 334- 340: evwkt SgpAraA ifrah PTF1_RHOCA : 459- 464: ptsht SiiAr-A ldipa PTF1_RHOCA : 544- 549: vvani SdvAe-A iasve PTF1_RHOCA : 552- 557: aeaia SveAg-A egvgl PTF1_RHOCA : 788- 793: relsv SipAv-A gikaq PTF1_XANCP : 153- 157: rapdt Sa-Ap-A tdlae PTF1_XANCP : 228- 232: vsakg Sd-Ap-A llkrl Q 17: 11.0102 39( 23) S-x(0,1)-L-x(3,5)-A Occurences: 39(23) PODK_BACSY : 393- 401: gevig SaLpaspgA aagkv PODK_ENTHI : 137- 143: yrrfv S-Lfgki-A lnacd PODK_FLATR : 60- 67: pelrs SgLtppr-A vlnpv PODK_FLATR : 99- 106: nrdmk SlLggkg-A nlaem PODK_FLATR : 99- 106: nrdmk S-LlggkgA nlaem PODK_MAIZE : 59- 67: tgphc SpLravvdA apiqt PODK_MAIZE : 712- 720: iediv SeLcaetgA nqeda PPSA_ECOLI : 166- 172: khvfa S-Lfndr-A isyrv PPSA_PYRFU : 162- 168: krcwa S-Lwtpr-A tfyra PPSA_STAMA : 167- 173: krcwa S-Lftsr-A vfyrv PPSA_STAMA : 573- 580: eqgke S-LfidklA egiak PT1A_ECOLI : 14- 20: iltpi SsLdln--A lgnlp PT1A_ECOLI : 15- 20: ltpis S-Ldln--A lgnlp PT1A_ECOLI : 74- 81: lagdt S-LrehllA gvsag PT1A_ECOLI : 110- 116: srsss SyLqer--A ldvrd PT1A_ECOLI : 366- 372: ttqlr SiLras--A hgslk PT1P_ECOLI : 141- 147: desee SfLvtl--A tqmaa PT1P_ECOLI : 561- 568: lpmvt S-LdevdeA rrlie PT1P_ECOLI : 718- 724: nlaqr S-Leaql-A tevrh PT1P_SALTY : 55- 61: tlarr S-Leaqm-A tevrh PT1_ALCEU : 208- 213: aivar S-Ldip--A avgvq PT1_ALCEU : 208- 214: aivar S-Ldipa-A vgvqs PT1_BACST : 202- 207: aimar S-Leip--A vvgtk PT1_BACST : 535- 541: smsat SiLpar--A qlkkl PT1_BACSU : 176- 181: aimar S-Leip--A vvgtk PT1_BACSU : 518- 525: artqi SkLskqe-A esfke PT1_ECOLI : 196- 201: simar S-Lelp--A ivgtg PT1_ENTFA : 19- 24: aimar S-Leip--A ivgtk PT1_HAEIN : 64- 70: erali S-Lgeek-A aifeg PT1_HAEIN : 64- 71: erali S-LgeekaA ifegh PT1_HAEIN : 196- 201: simar S-Lelp--A ivgtn PT1_MYCCA : 197- 202: aimar S-Leip--A ilglk PT1_MYCCA : 284- 290: tndvq SvLdsg--A egigl PT1_SALTY : 196- 201: simar S-Lelp--A ivgtg PT1_STACA : 198- 203: aimsr S-Leip--A vvgtk PT1_STRMU : 56- 62: sqnel S-Lirqk-A vdtlg PT1_STRSL : 65- 70: ekave S-Lgee--A aavfd PT1_STRSL : 65- 71: ekave S-Lgeea-A avfda PT1_STRSL : 65- 72: ekave S-LgeeaaA vfdah PTF1_RHOCA : 205- 211: gksli SlLnlg--A aqgaa PTF1_RHOCA : 205- 211: gksli S-Llnlg-A aqgaa PTF1_RHOCA : 205- 212: gksli SlLnlga-A qgaal PTF1_RHOCA : 205- 212: gksli S-LlnlgaA qgaal PTF1_XANCP : 172- 179: tiayp SgLharp-A trwae PTF1_XANCP : 243- 250: ravmd S-LtaqekA daera PTF1_XANCP : 672- 678: vpeli S-Lreic-A airae PTF1_XANCP : 672- 679: vpeli S-LreicaA irael PTF1_XANCP : 808- 814: rgral SaLqql--A eqalh R 18: 11.0102 72( 23) R-x(1,2)-L-x(3,5)-A Occurences: 72(23) PODK_BACSY : 531- 539: wadkf Rt-LkvrtnA dtped PODK_BACSY : 747- 754: mieip RaaLtad--A iaeea PODK_BACSY : 747- 756: mieip RaaLtadaiA eeaef PODK_ENTHI : 755- 764: mvecv RaaLtadkiA teasf PODK_FLATR : 612- 618: wadqa Rr-Lkvm--A nadtp PODK_FLATR : 612- 620: wadqa Rr-LkvmanA dtpnd PODK_MAIZE : 606- 612: wvddv Rk-Lkvl--A nadtp PODK_MAIZE : 606- 614: wvddv Rk-LkvlanA dtpdd PODK_MAIZE : 824- 833: mieip RaaLvadeiA eqaef PPSA_ECOLI : 356- 365: ircih RvrLspegrA ighri PPSA_ECOLI : 428- 434: aaiia Re-Lgip--A vvgcg PPSA_PYRFU : 766- 772: vaqee Rk-Lmle--A arkql PPSA_PYRFU : 766- 773: vaqee Rk-Lmlea-A rkqlf PPSA_STAMA : 453- 459: aaivs Re-Lgip--A ivgtg PT1A_ECOLI : 51- 58: knief Rl-Ldsdg-A tsail PT1A_ECOLI : 76- 85: gdtsl RehLlagvsA glsca PT1A_ECOLI : 244- 251: lreqq RvwLtqq--A rtadg PT1A_ECOLI : 365- 372: fttql RsiLras--A hgslk PT1A_ECOLI : 473- 481: npafl Ra-LdyavqA vhrqg PT1A_ECOLI : 536- 542: dsrec Rk-Llnq--A macrt PT1A_ECOLI : 536- 544: dsrec RklLnqam-A crtsl PT1A_ECOLI : 536- 544: dsrec Rk-LlnqamA crtsl PT1A_ECOLI : 603- 611: rcryp Rk-LeadlwA reavf PT1A_ECOLI : 689- 696: mheef RnaLvna--A sadai PT1A_ECOLI : 689- 698: mheef RnaLvnaasA daias PT1P_ECOLI : 304- 312: ralgq Rl-LfhlddA nqgpn PT1P_ECOLI : 498- 504: kpvtl Rt-Ldvg--A dkqlp PT1P_ECOLI : 540- 547: fliqv RamLran--A atgnl PT1P_ECOLI : 540- 548: fliqv RamLrana-A tgnln PT1P_ECOLI : 569- 575: evdea Rr-Lier--A greve PT1P_ECOLI : 649- 655: hpaml Ra-Lami--A reaei PT1P_ECOLI : 717- 724: enlaq Rs-Leaql-A tevrh PT1P_SALTY : 53- 61: aqtla RrsLeaqm-A tevrh PT1P_SALTY : 54- 61: qtlar Rs-Leaqm-A tevrh PT1_ALCEU : 18- 25: gvaig RahLlap--A aldvs PT1_ALCEU : 18- 26: gvaig RahLlapa-A ldvsh PT1_ALCEU : 62- 68: laalk Rd-Lprd--A peelg PT1_ALCEU : 139- 145: rqvve Ri-Lkal--A gapvl PT1_ALCEU : 139- 147: rqvve Ri-LkalagA pvlvp PT1_ALCEU : 207- 213: taiva Rs-Ldip--A avgvq PT1_ALCEU : 207- 214: taiva Rs-Ldipa-A vgvqs PT1_ALCEU : 390- 397: fltql RalLras--A fgpvr PT1_ALCEU : 390- 397: fltql Ra-Llras-A fgpvr PT1_ALCEU : 402- 409: afgpv Rl-Lvpml-A hasei PT1_ALCEU : 426- 434: iakak Rq-LdergeA ydpgm PT1_BACST : 201- 207: saima Rs-Leip--A vvgtk PT1_BACST : 377- 386: mqdmf RtqLrallrA svygn PT1_BACST : 540- 547: silpa RaqLkkl--A keeaa PT1_BACSU : 175- 181: saima Rs-Leip--A vvgtk PT1_BACSU : 351- 360: eqeif RtqLrallrA stygn PT1_ECOLI : 42- 48: dqeve Rf-Lsgr--A kasaq PT1_ECOLI : 42- 50: dqeve Rf-LsgrakA saqle PT1_ECOLI : 195- 201: tsima Rs-Lelp--A ivgtg PT1_ECOLI : 367- 376: iamdr ReiLrdqlrA ilras PT1_ECOLI : 371- 380: rreil RdqLrailrA safgk PT1_ECOLI : 375- 382: lrdql RaiLras--A fgklr PT1_ENTFA : 18- 24: saima Rs-Leip--A ivgtk PT1_HAEIN : 195- 201: tsima Rs-Lelp--A ivgtn PT1_HAEIN : 367- 376: ialdr ReiLnaqlrA vlras PT1_HAEIN : 375- 382: lnaql RavLras--A fgkla PT1_MYCCA : 196- 202: aaima Rs-Leip--A ilglk PT1_MYCCA : 375- 382: fkdqi RalLras--A fgklg PT1_MYCCA : 375- 382: fkdqi Ra-Llras-A fgklg PT1_SALTY : 42- 48: dqeve Rf-Lsgr--A kasaq PT1_SALTY : 42- 50: dqeve Rf-LsgrakA saqle PT1_SALTY : 195- 201: tsima Rs-Lelp--A ivgtg PT1_SALTY : 375- 382: lrdqv RaiLras--A fgklr PT1_STACA : 197- 203: saims Rs-Leip--A vvgtk PT1_STACA : 373- 382: qpeif RpqLrallrA svfgk PT1_STRMU : 197- 203: saima Rt-Leia--A vlgtn PT1_STRMU : 375- 384: gnqmf RtqLrallrA svhgq PT1_STRMU : 555- 561: qelaq Ra-Ltec--A tmeev PT1_STRSL : 197- 203: saima Rt-Leia--A vlgtn PT1_STRSL : 375- 384: gnqmf RtqLrallrA svhgk PTF1_RHOCA : 68- 75: glpqd Rd-Lihdt-A iavvq PTF1_RHOCA : 463- 469: tsiia Ra-Ldip--A vagvg PTF1_RHOCA : 463- 471: tsiia Ra-LdipavA gvgpr PTF1_RHOCA : 639- 648: hedlf RtqLraiyrA saggq PTF1_RHOCA : 783- 791: sglgv Re-LsvsipA vagik PTF1_RHOCA : 808- 814: amaen Rd-Larr--A lactt PTF1_RHOCA : 808- 816: amaen Rd-LarralA cttaa PTF1_RHOCA : 812- 820: nrdla RraLactt-A aevrg PTF1_RHOCA : 812- 821: nrdla RraLacttaA evrgl PTF1_RHOCA : 813- 820: rdlar Ra-Lactt-A aevrg PTF1_RHOCA : 813- 821: rdlar Ra-LacttaA evrgl PTF1_XANCP : 333- 340: qddtq Rr-Lgasd-A aifka PTF1_XANCP : 333- 341: qddtq Rr-LgasdaA ifkaq PTF1_XANCP : 404- 412: lrdvg RrvLaqld-A aaaga PTF1_XANCP : 404- 413: lrdvg RrvLaqldaA aagag PTF1_XANCP : 405- 412: rdvgr Rv-Laqld-A aaaga PTF1_XANCP : 405- 413: rdvgr Rv-LaqldaA aagag PTF1_XANCP : 466- 472: tails Rt-Lglp--A lvaag PTF1_XANCP : 597- 603: qalng Rp-Livr--A ldigg PTF1_XANCP : 645- 651: lepqs Ra-Lyra--A kdgar S 19: 11.0102 60( 23) R-x(1,3)-L-x(3,4)-A Occurences: 60(23) PODK_BACSY : 747- 754: mieip Raa-Ltad-A iaeea PODK_ENTHI : 134- 143: ydsyr RfvsLfgkiA lnacd PODK_FLATR : 58- 67: srpel RssgLtpprA vlnpv PODK_FLATR : 612- 618: wadqa Rr--Lkvm-A nadtp PODK_MAIZE : 606- 612: wvddv Rk--Lkvl-A nadtp PPSA_ECOLI : 428- 434: aaiia Re--Lgip-A vvgcg PPSA_PYRFU : 766- 772: vaqee Rk--Lmle-A arkql PPSA_PYRFU : 766- 773: vaqee Rk--LmleaA rkqlf PPSA_STAMA : 453- 459: aaivs Re--Lgip-A ivgtg PT1A_ECOLI : 51- 58: knief Rl--LdsdgA tsail PT1A_ECOLI : 76- 85: gdtsl RehlLagvsA glsca PT1A_ECOLI : 244- 251: lreqq Rvw-Ltqq-A rtadg PT1A_ECOLI : 365- 372: fttql Rsi-Lras-A hgslk PT1A_ECOLI : 536- 542: dsrec Rk--Llnq-A macrt PT1A_ECOLI : 536- 544: dsrec Rkl-LnqamA crtsl PT1A_ECOLI : 689- 696: mheef Rna-Lvna-A sadai PT1P_ECOLI : 498- 504: kpvtl Rt--Ldvg-A dkqlp PT1P_ECOLI : 540- 547: fliqv Ram-Lran-A atgnl PT1P_ECOLI : 540- 548: fliqv Ram-LranaA tgnln PT1P_ECOLI : 569- 575: evdea Rr--Lier-A greve PT1P_ECOLI : 649- 655: hpaml Ra--Lami-A reaei PT1P_ECOLI : 717- 724: enlaq Rs--LeaqlA tevrh PT1P_SALTY : 53- 61: aqtla Rrs-LeaqmA tevrh PT1P_SALTY : 54- 61: qtlar Rs--LeaqmA tevrh PT1_ALCEU : 18- 25: gvaig Rah-Llap-A aldvs PT1_ALCEU : 18- 26: gvaig RahlLapa-A ldvsh PT1_ALCEU : 18- 26: gvaig Rah-LlapaA ldvsh PT1_ALCEU : 62- 68: laalk Rd--Lprd-A peelg PT1_ALCEU : 139- 145: rqvve Ri--Lkal-A gapvl PT1_ALCEU : 207- 213: taiva Rs--Ldip-A avgvq PT1_ALCEU : 207- 214: taiva Rs--LdipaA vgvqs PT1_ALCEU : 264- 273: alekk RlqrLrhtpA vtldg PT1_ALCEU : 390- 397: fltql Ral-Lras-A fgpvr PT1_ALCEU : 390- 397: fltql Ra--LlrasA fgpvr PT1_ALCEU : 402- 409: afgpv Rl--LvpmlA hasei PT1_BACST : 201- 207: saima Rs--Leip-A vvgtk PT1_BACST : 540- 547: silpa Raq-Lkkl-A keeaa PT1_BACSU : 175- 181: saima Rs--Leip-A vvgtk PT1_BACSU : 463- 471: npail RlitLvie-A ahkeg PT1_BACSU : 463- 472: npail RlitLvieaA hkegk PT1_ECOLI : 42- 48: dqeve Rf--Lsgr-A kasaq PT1_ECOLI : 195- 201: tsima Rs--Lelp-A ivgtg PT1_ECOLI : 375- 382: lrdql Rai-Lras-A fgklr PT1_ENTFA : 18- 24: saima Rs--Leip-A ivgtk PT1_HAEIN : 195- 201: tsima Rs--Lelp-A ivgtn PT1_HAEIN : 375- 382: lnaql Rav-Lras-A fgkla PT1_MYCCA : 196- 202: aaima Rs--Leip-A ilglk PT1_MYCCA : 375- 382: fkdqi Ral-Lras-A fgklg PT1_MYCCA : 375- 382: fkdqi Ra--LlrasA fgklg PT1_MYCCA : 483- 492: npsll RliqLtisgA hkhnk PT1_SALTY : 42- 48: dqeve Rf--Lsgr-A kasaq PT1_SALTY : 195- 201: tsima Rs--Lelp-A ivgtg PT1_SALTY : 375- 382: lrdqv Rai-Lras-A fgklr PT1_STACA : 197- 203: saims Rs--Leip-A vvgtk PT1_STRMU : 197- 203: saima Rt--Leia-A vlgtn PT1_STRMU : 555- 561: qelaq Ra--Ltec-A tmeev PT1_STRSL : 197- 203: saima Rt--Leia-A vlgtn PTF1_RHOCA : 68- 75: glpqd Rd--LihdtA iavvq PTF1_RHOCA : 463- 469: tsiia Ra--Ldip-A vagvg PTF1_RHOCA : 808- 814: amaen Rd--Larr-A lactt PTF1_RHOCA : 812- 820: nrdla Rra-LacttA aevrg PTF1_RHOCA : 813- 820: rdlar Ra--LacttA aevrg PTF1_XANCP : 117- 126: itlvr RltrLiqdpA qleal PTF1_XANCP : 333- 340: qddtq Rr--LgasdA aifka PTF1_XANCP : 404- 412: lrdvg Rrv-LaqldA aaaga PTF1_XANCP : 405- 412: rdvgr Rv--LaqldA aaaga PTF1_XANCP : 466- 472: tails Rt--Lglp-A lvaag PTF1_XANCP : 466- 475: tails RtlgLpalvA aggql PTF1_XANCP : 597- 603: qalng Rp--Livr-A ldigg PTF1_XANCP : 645- 651: lepqs Ra--Lyra-A kdgar T 20: 11.0102 60( 23) A-x(0,1)-R-x(0,2)-E Occurences: 60(23) PODK_BACSY : 585- 587: sdsve A-R--E ealne PODK_BACSY : 585- 588: sdsve A-Re-E alnel PODK_ENTHI : 694- 697: rafle AtR--E vikeg PODK_FLATR : 15- 17: mllks A-R--E sclpa PODK_MAIZE : 727- 730: qedal A-Ri-E klsev PPSA_ECOLI : 107- 110: pelen AiR--E ayaql PPSA_ECOLI : 336- 339: lfivq A-Rp-E tvaha PPSA_ECOLI : 427- 429: haaii A-R--E lgipa PPSA_ECOLI : 511- 514: egvgl A-Rl-E fiinr PPSA_PYRFU : 636- 638: eakri A-R--E vglep PPSA_STAMA : 348- 351: vfivq A-Rl-E tvwsv PPSA_STAMA : 641- 645: pkyep AfRl-E vraik PT1A_ECOLI : 238- 241: arvqd AlR--E qqrvw PT1A_ECOLI : 349- 354: flgyr AvRiyE eyasl PT1A_ECOLI : 611- 613: eadlw A-R--E avfst PT1P_ECOLI : 15- 20: ekvas ApRlnE alnil PT1P_ECOLI : 568- 573: devde ArRliE ragre PT1P_ECOLI : 575- 578: rlier AgR--E veemi PT1P_ECOLI : 575- 580: rlier AgRevE emigy PT1P_ECOLI : 655- 657: alami A-R--E aeihg PT1P_ECOLI : 655- 659: alami A-ReaE ihgid PT1P_ECOLI : 715- 720: eaenl AqRslE aqlat PT1P_SALTY : 52- 57: daqtl ArRslE aqmat PT1_ALCEU : 52- 56: raara AvRa-E laalk PT1_ALCEU : 89- 91: ddeal A-R--E peali PT1_ALCEU : 89- 93: ddeal A-RepE alirg PT1_ALCEU : 357- 361: dkpld A-RgdE fetal PT1_BACST : 4- 7: mgn AiR--E ktihg PT1_BACST : 24- 28: iaiak AyRl-E tpdla PT1_BACST : 47- 50: veaei A-Rl-E aavak PT1_BACST : 200- 204: hsaim A-RslE ipavv PT1_BACST : 250- 253: yeqkr A-Ry-E aqkae PT1_BACST : 469- 474: qytma AdRmnE rvayl PT1_BACST : 498- 501: hvida AhR--E gkwvg PT1_BACST : 551- 556: lakee AaRikE tvlsl PT1_BACST : 552- 556: akeea A-RikE tvlsl PT1_BACSU : 18- 22: iaiak AyRl-E epdlt PT1_BACSU : 18- 23: iaiak AyRleE pdltv PT1_BACSU : 48- 52: fdeai A-RskE eleki PT1_BACSU : 174- 178: hsaim A-RslE ipavv PT1_BACSU : 443- 448: qytma AdRmnE rvsyl PT1_ECOLI : 194- 198: htsim A-RslE lpaiv PT1_ECOLI : 401- 405: veevr AlRk-E ieiyk PT1_ENTFA : 17- 21: hsaim A-RslE ipaiv PT1_HAEIN : 41- 45: idaev A-RfyE grnaa PT1_HAEIN : 194- 198: htsim A-RslE lpaiv PT1_MYCCA : 195- 199: haaim A-RslE ipail PT1_SALTY : 194- 198: htsim A-RslE lpaiv PT1_SALTY : 401- 405: veevr AlRk-E ieiyk PT1_STACA : 465- 470: qytma AdRmsE rvsyl PT1_STRMU : 196- 200: hsaim A-RtlE iaavl PT1_STRMU : 467- 472: qytma AdRmnE qvsyl PT1_STRSL : 196- 200: hsaim A-RtlE iaavl PT1_STRSL : 467- 472: qytma AdRmnE qvsyl PTF1_RHOCA : 292- 295: pvfrf A-Rd-E vvfdt PTF1_RHOCA : 505- 508: teadk A-Ra-E tamaa PTF1_RHOCA : 516- 519: maalt AqR--E leare PTF1_RHOCA : 516- 521: maalt AqRelE arery PTF1_RHOCA : 522- 524: qrele A-R--E rykpa PTF1_RHOCA : 535- 538: ltvdg A-Rv-E vvani PTF1_RHOCA : 670- 675: eelet ArRiaE evrle PTF1_XANCP : 161- 165: patdl AeRf-E wtiay PTF1_XANCP : 179- 184: lharp AtRwaE targf PTF1_XANCP : 519- 522: iaeqq AiR--E reaaq PTF1_XANCP : 519- 524: iaeqq AiRerE aaqra PTF1_XANCP : 679- 683: reica AiRa-E lhape PTF1_XANCP : 831- 834: vrale AqR--E gqa Number of patterns evaluated by Pratt:334 Total running time: 3 seconds