------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file PCNA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PCNA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PCN2_DAUCA 365 PCNA_CATRO 268 PCNA_DAUCA 264 PCNA_DROME 260 PCNA_HUMAN 261 PCNA_MOUSE 261 PCNA_NPVAC 256 PCNA_ORYSA 263 PCNA_PLAFK 274 PCNA_RAT 261 PCNA_SCHPO 260 PCNA_SOYBN 236 PCNA_XENLA 261 PCNA_YEAST 258 Pratt run started at Thu Feb 6 20:30:47 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 14( 14) G-x(3)-Q-x(2)-D-x(3)-V-x-L-V-x(1,2)-L 2: 24.5203 14( 14) Q-x(2)-D-x(3)-V-x-L-V-x(1,2)-L 3: 24.0203 14( 14) F-x(3)-Y-x(5)-K-x(3)-L-x(3)-V-x(2,4)-S 4: 23.0203 14( 14) K-L-M-x(2,4)-D-x(1,3)-L-x-I 5: 20.3503 14( 14) D-x(3)-V-x-L-V-x(1,2)-L 6: 19.8503 14( 14) Y-x(5)-K-x(3)-L-x(3)-V-x(2,4)-S 7: 18.8503 14( 14) L-M-x(2,4)-D-x(1,3)-L-x-I 8: 16.6802 14( 14) L-A-P-K 9: 16.6802 14( 14) F-x(3)-R-C-D 10: 16.1802 14( 14) V-x-L-V-x(1,2)-L 11: 16.1802 14( 14) S-x-V-x-L-x(2,3)-L 12: 16.1802 14( 14) D-x-S-x(3)-L-x(2,3)-L 13: 15.6802 14( 14) K-x(3)-L-x(3)-V-x(2,4)-S 14: 15.6802 14( 14) H-x(0,1)-V-x-L-x(2,3)-L 15: 15.6802 24( 14) S-x(1,2)-V-x-L-x(2,3)-L 16: 15.1802 17( 14) D-x(1,3)-E-x(1,2)-L-x(3)-D 17: 15.1802 14( 14) L-x(3,4)-L-x(2,4)-G-F 18: 14.6802 14( 14) M-x(2,4)-D-x(1,3)-L-x-I 19: 14.6802 17( 14) V-x-L-x(1,3)-L-x(2,4)-G 20: 12.5102 14( 14) A-P-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 106.9072 14( 14) F-x(2)-[FY]-R-C-D-[HR]-[ENP]-x(2)-[ILM]-[GN]-[IMV]-x-[ILM]-[AGNST]-[ANS]-[LM]-[ANS]-K-[IMV]-[FLV]-[KR]-x-[ACGV]-[AGNQ]-[AENS]-x-[DES]-x-[ILV]-x-[ILM]-x-[AS]-x-[DN]-[DGNQT]-x-[DE]-[NSTV]-[ILMV]-x-[FILM]-[LMV]-F-[EN]-[ADNS] B 2: 51.4257 14( 14) F-[AGS]-x-[DKR]-Y-[LM]-x(2)-[FI]-x-K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] C 3: 47.2827 14( 14) K-L-M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] D 4: 46.9033 14( 14) G-[FILV]-x(2)-Q-[ASV]-[LMV]-D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] E 5: 44.7392 17( 14) V-x-L-x(1,3)-L-x(2,4)-G-[FV]-x(2)-[FY]-[QR]-x(2)-R-x(4)-[GNV]-x(4)-[ADNS]-[LM]-[ANST]-x-[ILMV]-x-[KR] F 6: 43.1126 14( 14) L-M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] G 7: 42.0108 14( 14) Y-[LM]-x(2)-[FI]-x-K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] H 8: 40.4768 14( 14) Q-[ASV]-[LMV]-D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] I 9: 38.9426 14( 14) M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] J 10: 31.1028 14( 14) K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] K 11: 30.8724 14( 14) D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] L 12: 24.5554 14( 14) L-A-P-K-[FIM]-x-[DEN]-[DEN] M 13: 21.6009 14( 14) L-x(3,4)-L-x(2,4)-G-F-x(2)-[FY]-x(2)-[AD] N 14: 21.2379 14( 14) D-[DENST]-S-x-[LV]-x-L-x(2,3)-L O 15: 20.5018 14( 14) H-x(0,1)-V-[AST]-L-x(2,3)-L-x(3)-[ADES] P 16: 20.3853 14( 14) A-P-K-[FIM]-x-[DEN]-[DEN] Q 17: 18.8503 14( 14) K-L-M-x(2,4)-D-x(1,3)-L R 18: 18.3999 14( 14) V-x-L-V-x(1,2)-L-x(4)-[DEGS] S 19: 18.3999 14( 14) S-x-V-x-L-x(2,3)-L-x(4)-[DEGS] T 20: 17.8999 24( 14) S-x(1,2)-V-x-L-x(2,3)-L-x(4)-[DEGS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 106.9072 14( 14) F-x(2)-[FY]-R-C-D-[HR]-[ENP]-x(2)-[ILM]-[GN]-[IMV]-x-[ILM]-[AGNST]-[ANS]-[LM]-[ANS]-K-[IMV]-[FLV]-[KR]-x-[ACGV]-[AGNQ]-[AENS]-x-[DES]-x-[ILV]-x-[ILM]-x-[AS]-x-[DN]-[DGNQT]-x-[DE]-[NSTV]-[ILMV]-x-[FILM]-[LMV]-F-[EN]-[ADNS] Occurences: 14(14) PCN2_DAUCA : 57- 105: lrseg FehYRCDRNisMGMnLGNMAKMLRcAGNdDiVtMkAdDDgDVItFMFES ptqdk PCNA_CATRO : 57- 105: lrseg FehYRCDRNpsMGMnLNNMAKMLKcAGNdDiItLkAdDGsDTVtFMFES ptqdk PCNA_DAUCA : 57- 105: lrseg FehYRCDRNisMGMnLGNMAKMLKcAGNdDiItIkAdDGsDTVtFMFES ptqdk PCNA_DROME : 57- 105: lrsdg FdkFRCDRNlsMGMnLGSMAKILKcANNeDnVtMkAqDNaDTVtIMFES anqek PCNA_HUMAN : 57- 105: lrseg FdtYRCDRNlaMGVnLTSMSKILKcAGNeDiItLrAeDNaDTLaLVFEA pnqek PCNA_MOUSE : 57- 105: lrseg FdtYRCDRNlaMGVnLTSMSKILKcAGNeDiItLrAeDNaDTLaLVFEA pnqek PCNA_NPVAC : 57- 105: lhaeg FkkYRCDRNvpLNVsINSLSKIVKcVNErSsVlMkAeDQgDVMaFVFNN dnric PCNA_ORYSA : 57- 105: lrseg FehYRCDRNlsMGMnLNNMAKMLRcAGNdDiItIkAdDGsDTVtFMFES pnqdk PCNA_PLAFK : 57- 105: lldsg FshYRCDRErvLGVnIASLNKVFKlCGAnEsVvIsSkDDeDNLnFVFEN nkedk PCNA_RAT : 57- 105: lrseg FdtYRCDRNlaMGVnLTSMSKILKcAGNeDiItLrAeDNaDTLaLVFEA pnqek PCNA_SCHPO : 57- 105: iksdg FepYRCDRNiaLGInLNALSKVLRcAQNeDlVtLkAeDTpEVLnLVFES ekndr PCNA_SOYBN : 27- 75: lrseg FehYRCDRNisMGMnLNNMAKMLKcAGNdDiItIkAdDGsDTVtFMFES ptqdk PCNA_XENLA : 57- 105: lrsdg FdtYRCDRNqsIGVkMSSMSKILKcAASdDiItLrAeDNaDTVtMVFES pnqek PCNA_YEAST : 57- 105: igvea FqeYRCDHPvtLGMdLTSLSKILRcGNNtDtLtLiAdNTpDSIiLLFED tkkdr B 2: 51.4257 14( 14) F-[AGS]-x-[DKR]-Y-[LM]-x(2)-[FI]-x-K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] Occurences: 14(14) PCN2_DAUCA : 207- 237: tvslt FAlRYMnsFtKATpLANqVtislSselPvvV eykia PCNA_CATRO : 207- 237: pvslt FAlRYLnsFtKATpLSNnVtislSselPvvV eykia PCNA_DAUCA : 207- 237: pvslt FAlRYMnsFtKASpLSStVtislSselPvvV eykia PCNA_DROME : 207- 235: pvtlt FAcRYLnaFtKATpLSTqVql--SmcaDvpL vveya PCNA_HUMAN : 207- 235: pvqlt FAlRYLnfFtKATpLSStVtl--SmsaDvpL vveyk PCNA_HUMAN : 207- 237: pvqlt FAlRYLnfFtKATpLSStVtlsmSadvPlvV eykia PCNA_MOUSE : 207- 235: pvhlt FAlRYLnfFtKATpLSPtVtl--SmsaDvpL vveyk PCNA_MOUSE : 207- 237: pvhlt FAlRYLnfFtKATpLSPtVtlsmSadvPlvV eykia PCNA_NPVAC : 200- 230: tvtht FAgDYLchFaKAApLAPtVtiymSeelPfkL eycik PCNA_ORYSA : 207- 237: pvslt FAlRYMnsFtKASpLSEqVtislSselPvvV eykia PCNA_PLAFK : 209- 239: kikqs FAiKYLnlFsKSNiLADvVvlglSdsrPieF kyeik PCNA_RAT : 207- 235: pvqlt FAlRYLnfFtKATpLSPtVtl--SmsaDvpL vveyk PCNA_RAT : 207- 237: pvqlt FAlRYLnfFtKATpLSPtVtlsmSadvPlvV eykia PCNA_SCHPO : 207- 235: avtlt FSlKYLaqFtKATpLATrVtl--SmsnDvpL lveyk PCNA_SCHPO : 207- 237: avtlt FSlKYLaqFtKATpLATrVtlsmSndvPllV eykme PCNA_SOYBN : 177- 207: pvslt FAlRYMnsFtKATpLSNtVtislSnelPvvV eykia PCNA_XENLA : 207- 235: pvqlt FAlRYLnfFtKATpLSPtVil--SmsaDipL vveyk PCNA_XENLA : 207- 237: pvqlt FAlRYLnfFtKATpLSPtVilsmSadiPlvV eykia PCNA_YEAST : 207- 237: pvdlt FGaKYLldIiKGSsLSDrVgirlSseaPalF qfdlk C 3: 47.2827 14( 14) K-L-M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] Occurences: 14(14) PCN2_DAUCA : 117- 148: sdfem KLMdi--DsehLgIPEsEyeaiVrMPsaEfAriC kdlst PCNA_CATRO : 117- 148: sdfem KLMdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DAUCA : 117- 148: adfem KLMdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DROME : 117- 148: sdyem KLMnl--DqehLgIPEtDfscvVrMPamEfAriC rdlaq PCNA_HUMAN : 117- 148: sdyem KLMdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_MOUSE : 117- 148: sdyem KLMdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsh PCNA_NPVAC : 115- 146: ctytl KLMci--DvehLgIPDsDydcvVhMSsvEfAqvC kdmtq PCNA_ORYSA : 117- 148: adfem KLMdi--DsehLgIPDsEyqaiVrMPssEfSriC kdlss PCNA_PLAFK : 117- 148: tnfsl KLMsielDs--LnIPDcEegfdAeVElsSkEltN ifrnl PCNA_RAT : 117- 148: sdyem KLMdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_SCHPO : 117- 148: sdydv KLMdi--DqehLgIPDiEydatItMPaaEfQriT rdllt PCNA_SOYBN : 87- 118: sdfem KLMdi--DsehLgIPEaEyhaiVkMPssEfAriC kdlss PCNA_XENLA : 117- 148: sdyem KLMdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsq PCNA_YEAST : 117- 148: aeysl KLMdidaDf--LkIEElQydstLsLPssEfSkiV rdlsq PCNA_YEAST : 117- 148: aeysl KLMdi--DadfLkIEElQydstLsLPssEfSkiV rdlsq D 4: 46.9033 14( 14) G-[FILV]-x(2)-Q-[ASV]-[LMV]-D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] Occurences: 14(14) PCN2_DAUCA : 34- 56: dcsas GFslQAMDSSHVaLVavLlrseG fehyr PCNA_CATRO : 34- 55: dcsas GFslQAMDSSHVaLVa-LllrsE gfehy PCNA_CATRO : 34- 56: dcsas GFslQAMDSSHVaLValLlrseG fehyr PCNA_DAUCA : 34- 56: dcsat GFslQAMDSSHVaLVavLlrseG fehyr PCNA_DROME : 34- 55: dcsds GIqlQAMDNSHVsLVs-LtlrsD gfdkf PCNA_HUMAN : 34- 55: disss GVnlQSMDSSHVsLVq-LtlrsE gfdty PCNA_MOUSE : 34- 55: dvssg GVnlQSMDSSHVsLVq-LtlrsE gfdty PCNA_NPVAC : 34- 55: dcdnr GVsmQVMDTSHVaLVs-LqlhaE gfkky PCNA_ORYSA : 34- 55: dcsgt GFslQAMDSSHVaLVa-LllrsE gfehy PCNA_ORYSA : 34- 56: dcsgt GFslQAMDSSHVaLValLlrseG fehyr PCNA_PLAFK : 34- 55: dades GLklQALDGNHVsLVs-LhlldS gfshy PCNA_RAT : 34- 55: dissg GVnlQSMDSSHVsLVq-LtlrsE gfdty PCNA_SCHPO : 34- 56: dcndn GIslQAMDSSHVaLVsmLiksdG fepyr PCNA_SOYBN : 4- 25: sst GFslQAMDSSHVaLVa-LllrsE gfehy PCNA_SOYBN : 4- 26: sst GFslQAMDSSHVaLValLlrseG fehyr PCNA_XENLA : 34- 55: ditss GIslQSMDSSHVsLVq-LtlrsD gfdty PCNA_YEAST : 34- 55: qcked GIiaQAVDDSRVlLVs-LeigvE afqey E 5: 44.7392 17( 14) V-x-L-x(1,3)-L-x(2,4)-G-[FV]-x(2)-[FY]-[QR]-x(2)-R-x(4)-[GNV]-x(4)-[ADNS]-[LM]-[ANST]-x-[ILMV]-x-[KR] Occurences: 17(14) PCN2_DAUCA : 45- 80: mdssh VaLvavLlrseGFehYRcdRnismGmnlgNMAkMlR cagnd PCNA_CATRO : 45- 80: mdssh VaLvalLlrseGFehYRcdRnpsmGmnlnNMAkMlK cagnd PCNA_CATRO : 48- 80: shval VaLl--Lrse-GFehYRcdRnpsmGmnlnNMAkMlK cagnd PCNA_DAUCA : 45- 80: mdssh VaLvavLlrseGFehYRcdRnismGmnlgNMAkMlK cagnd PCNA_DROME : 48- 80: shvsl VsLt--Lrsd-GFdkFRcdRnlsmGmnlgSMAkIlK canne PCNA_HUMAN : 48- 80: shvsl VqLt--Lrse-GFdtYRcdRnlamGvnltSMSkIlK cagne PCNA_MOUSE : 48- 80: shvsl VqLt--Lrse-GFdtYRcdRnlamGvnltSMSkIlK cagne PCNA_NPVAC : 48- 80: shval VsLq--Lhae-GFkkYRcdRnvplNvsinSLSkIvK cvner PCNA_ORYSA : 45- 80: mdssh VaLvalLlrseGFehYRcdRnlsmGmnlnNMAkMlR cagnd PCNA_ORYSA : 48- 80: shval VaLl--Lrse-GFehYRcdRnlsmGmnlnNMAkMlR cagnd PCNA_PLAFK : 48- 80: nhvsl VsLhl-Lds--GFshYRcdRervlGvniaSLNkVfK lcgan PCNA_PLAFK : 48- 80: nhvsl VsLh--Llds-GFshYRcdRervlGvniaSLNkVfK lcgan PCNA_RAT : 48- 80: shvsl VqLt--Lrse-GFdtYRcdRnlamGvnltSMSkIlK cagne PCNA_SCHPO : 45- 80: mdssh VaLvsmLiksdGFepYRcdRnialGinlnALSkVlR caqne PCNA_SOYBN : 15- 50: mdssh VaLvalLlrseGFehYRcdRnismGmnlnNMAkMlK cagnd PCNA_SOYBN : 18- 50: shval VaLl--Lrse-GFehYRcdRnismGmnlnNMAkMlK cagnd PCNA_XENLA : 48- 80: shvsl VqLt--Lrsd-GFdtYRcdRnqsiGvkmsSMSkIlK caasd PCNA_YEAST : 45- 77: vddsr VlLvs-Lei--GVeaFQeyRcdhpVtlgmDLTsLsK ilrcg F 6: 43.1126 14( 14) L-M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] Occurences: 14(14) PCN2_DAUCA : 118- 148: dfemk LMdi--DsehLgIPEsEyeaiVrMPsaEfAriC kdlst PCNA_CATRO : 118- 148: dfemk LMdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DAUCA : 118- 148: dfemk LMdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DROME : 118- 148: dyemk LMnl--DqehLgIPEtDfscvVrMPamEfAriC rdlaq PCNA_HUMAN : 118- 148: dyemk LMdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_MOUSE : 118- 148: dyemk LMdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsh PCNA_NPVAC : 116- 146: tytlk LMci--DvehLgIPDsDydcvVhMSsvEfAqvC kdmtq PCNA_ORYSA : 118- 148: dfemk LMdi--DsehLgIPDsEyqaiVrMPssEfSriC kdlss PCNA_PLAFK : 118- 148: nfslk LMsielDs--LnIPDcEegfdAeVElsSkEltN ifrnl PCNA_RAT : 118- 148: dyemk LMdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_SCHPO : 118- 148: dydvk LMdi--DqehLgIPDiEydatItMPaaEfQriT rdllt PCNA_SOYBN : 88- 118: dfemk LMdi--DsehLgIPEaEyhaiVkMPssEfAriC kdlss PCNA_XENLA : 118- 148: dyemk LMdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsq PCNA_YEAST : 118- 148: eyslk LMdidaDf--LkIEElQydstLsLPssEfSkiV rdlsq PCNA_YEAST : 118- 148: eyslk LMdi--DadfLkIEElQydstLsLPssEfSkiV rdlsq G 7: 42.0108 14( 14) Y-[LM]-x(2)-[FI]-x-K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] Occurences: 14(14) PCN2_DAUCA : 211- 237: tfalr YMnsFtKATpLANqVtislSselPvvV eykia PCNA_CATRO : 211- 237: tfalr YLnsFtKATpLSNnVtislSselPvvV eykia PCNA_DAUCA : 211- 237: tfalr YMnsFtKASpLSStVtislSselPvvV eykia PCNA_DROME : 211- 235: tfacr YLnaFtKATpLSTqVql--SmcaDvpL vveya PCNA_HUMAN : 211- 235: tfalr YLnfFtKATpLSStVtl--SmsaDvpL vveyk PCNA_HUMAN : 211- 237: tfalr YLnfFtKATpLSStVtlsmSadvPlvV eykia PCNA_MOUSE : 211- 235: tfalr YLnfFtKATpLSPtVtl--SmsaDvpL vveyk PCNA_MOUSE : 211- 237: tfalr YLnfFtKATpLSPtVtlsmSadvPlvV eykia PCNA_NPVAC : 204- 230: tfagd YLchFaKAApLAPtVtiymSeelPfkL eycik PCNA_ORYSA : 211- 237: tfalr YMnsFtKASpLSEqVtislSselPvvV eykia PCNA_PLAFK : 213- 239: sfaik YLnlFsKSNiLADvVvlglSdsrPieF kyeik PCNA_RAT : 211- 235: tfalr YLnfFtKATpLSPtVtl--SmsaDvpL vveyk PCNA_RAT : 211- 237: tfalr YLnfFtKATpLSPtVtlsmSadvPlvV eykia PCNA_SCHPO : 211- 235: tfslk YLaqFtKATpLATrVtl--SmsnDvpL lveyk PCNA_SCHPO : 211- 237: tfslk YLaqFtKATpLATrVtlsmSndvPllV eykme PCNA_SOYBN : 181- 207: tfalr YMnsFtKATpLSNtVtislSnelPvvV eykia PCNA_XENLA : 211- 235: tfalr YLnfFtKATpLSPtVil--SmsaDipL vveyk PCNA_XENLA : 211- 237: tfalr YLnfFtKATpLSPtVilsmSadiPlvV eykia PCNA_YEAST : 211- 237: tfgak YLldIiKGSsLSDrVgirlSseaPalF qfdlk H 8: 40.4768 14( 14) Q-[ASV]-[LMV]-D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] Occurences: 14(14) PCN2_DAUCA : 38- 56: sgfsl QAMDSSHVaLVavLlrseG fehyr PCNA_CATRO : 38- 55: sgfsl QAMDSSHVaLVa-LllrsE gfehy PCNA_CATRO : 38- 56: sgfsl QAMDSSHVaLValLlrseG fehyr PCNA_DAUCA : 38- 56: tgfsl QAMDSSHVaLVavLlrseG fehyr PCNA_DROME : 38- 55: sgiql QAMDNSHVsLVs-LtlrsD gfdkf PCNA_HUMAN : 38- 55: sgvnl QSMDSSHVsLVq-LtlrsE gfdty PCNA_MOUSE : 38- 55: ggvnl QSMDSSHVsLVq-LtlrsE gfdty PCNA_NPVAC : 38- 55: rgvsm QVMDTSHVaLVs-LqlhaE gfkky PCNA_ORYSA : 38- 55: tgfsl QAMDSSHVaLVa-LllrsE gfehy PCNA_ORYSA : 38- 56: tgfsl QAMDSSHVaLValLlrseG fehyr PCNA_PLAFK : 38- 55: sglkl QALDGNHVsLVs-LhlldS gfshy PCNA_RAT : 38- 55: ggvnl QSMDSSHVsLVq-LtlrsE gfdty PCNA_SCHPO : 38- 56: ngisl QAMDSSHVaLVsmLiksdG fepyr PCNA_SOYBN : 8- 25: tgfsl QAMDSSHVaLVa-LllrsE gfehy PCNA_SOYBN : 8- 26: tgfsl QAMDSSHVaLValLlrseG fehyr PCNA_XENLA : 38- 55: sgisl QSMDSSHVsLVq-LtlrsD gfdty PCNA_YEAST : 38- 55: dgiia QAVDDSRVlLVs-LeigvE afqey I 9: 38.9426 14( 14) M-x(2,4)-D-x(1,3)-L-x-I-[EP]-[DE]-x-[DEQ]-x(4)-[AILV]-x-[LMV]-[EPS]-x(2)-[ES]-x-[AEQS]-x(2)-[CNTV] Occurences: 14(14) PCN2_DAUCA : 119- 148: femkl Mdi--DsehLgIPEsEyeaiVrMPsaEfAriC kdlst PCNA_CATRO : 119- 148: femkl Mdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DAUCA : 119- 148: femkl Mdi--DsehLgIPEaEyhaiVrMPsaEfAriC kdlss PCNA_DROME : 119- 148: yemkl Mnl--DqehLgIPEtDfscvVrMPamEfAriC rdlaq PCNA_HUMAN : 119- 148: yemkl Mdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_MOUSE : 119- 148: yemkl Mdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsh PCNA_NPVAC : 117- 146: ytlkl Mci--DvehLgIPDsDydcvVhMSsvEfAqvC kdmtq PCNA_ORYSA : 119- 148: femkl Mdi--DsehLgIPDsEyqaiVrMPssEfSriC kdlss PCNA_PLAFK : 119- 148: fslkl MsielDs--LnIPDcEegfdAeVElsSkEltN ifrnl PCNA_RAT : 119- 148: yemkl Mdl--DveqLgIPEqEyscvVkMPsgEfAriC rdlsh PCNA_SCHPO : 119- 148: ydvkl Mdi--DqehLgIPDiEydatItMPaaEfQriT rdllt PCNA_SOYBN : 89- 118: femkl Mdi--DsehLgIPEaEyhaiVkMPssEfAriC kdlss PCNA_XENLA : 119- 148: yemkl Mdl--DveqLgIPEqEyscvIkMPsgEfAriC rdlsq PCNA_YEAST : 119- 148: yslkl MdidaDf--LkIEElQydstLsLPssEfSkiV rdlsq PCNA_YEAST : 119- 148: yslkl Mdi--DadfLkIEElQydstLsLPssEfSkiV rdlsq J 10: 31.1028 14( 14) K-[AGS]-[ANST]-x-L-[AS]-[DENPST]-x-V-x(2,4)-S-x(3)-[DP]-x(2)-[FLV] Occurences: 14(14) PCN2_DAUCA : 217- 237: mnsft KATpLANqVtislSselPvvV eykia PCNA_CATRO : 217- 237: lnsft KATpLSNnVtislSselPvvV eykia PCNA_DAUCA : 217- 237: mnsft KASpLSStVtislSselPvvV eykia PCNA_DROME : 217- 235: lnaft KATpLSTqVql--SmcaDvpL vveya PCNA_HUMAN : 217- 235: lnfft KATpLSStVtl--SmsaDvpL vveyk PCNA_HUMAN : 217- 237: lnfft KATpLSStVtlsmSadvPlvV eykia PCNA_MOUSE : 217- 235: lnfft KATpLSPtVtl--SmsaDvpL vveyk PCNA_MOUSE : 217- 237: lnfft KATpLSPtVtlsmSadvPlvV eykia PCNA_NPVAC : 210- 230: lchfa KAApLAPtVtiymSeelPfkL eycik PCNA_ORYSA : 217- 237: mnsft KASpLSEqVtislSselPvvV eykia PCNA_PLAFK : 219- 239: lnlfs KSNiLADvVvlglSdsrPieF kyeik PCNA_RAT : 217- 235: lnfft KATpLSPtVtl--SmsaDvpL vveyk PCNA_RAT : 217- 237: lnfft KATpLSPtVtlsmSadvPlvV eykia PCNA_SCHPO : 217- 235: laqft KATpLATrVtl--SmsnDvpL lveyk PCNA_SCHPO : 217- 237: laqft KATpLATrVtlsmSndvPllV eykme PCNA_SOYBN : 187- 207: mnsft KATpLSNtVtislSnelPvvV eykia PCNA_XENLA : 217- 235: lnfft KATpLSPtVil--SmsaDipL vveyk PCNA_XENLA : 217- 237: lnfft KATpLSPtVilsmSadiPlvV eykia PCNA_YEAST : 217- 237: lldii KGSsLSDrVgirlSseaPalF qfdlk K 11: 30.8724 14( 14) D-[DGNST]-[NS]-[HR]-V-x-L-V-x(1,2)-L-x(4)-[DEGS] Occurences: 14(14) PCN2_DAUCA : 41- 56: slqam DSSHVaLVavLlrseG fehyr PCNA_CATRO : 41- 55: slqam DSSHVaLVa-LllrsE gfehy PCNA_CATRO : 41- 56: slqam DSSHVaLValLlrseG fehyr PCNA_DAUCA : 41- 56: slqam DSSHVaLVavLlrseG fehyr PCNA_DROME : 41- 55: qlqam DNSHVsLVs-LtlrsD gfdkf PCNA_HUMAN : 41- 55: nlqsm DSSHVsLVq-LtlrsE gfdty PCNA_MOUSE : 41- 55: nlqsm DSSHVsLVq-LtlrsE gfdty PCNA_NPVAC : 41- 55: smqvm DTSHVaLVs-LqlhaE gfkky PCNA_ORYSA : 41- 55: slqam DSSHVaLVa-LllrsE gfehy PCNA_ORYSA : 41- 56: slqam DSSHVaLValLlrseG fehyr PCNA_PLAFK : 41- 55: klqal DGNHVsLVs-LhlldS gfshy PCNA_RAT : 41- 55: nlqsm DSSHVsLVq-LtlrsE gfdty PCNA_SCHPO : 41- 56: slqam DSSHVaLVsmLiksdG fepyr PCNA_SOYBN : 11- 25: slqam DSSHVaLVa-LllrsE gfehy PCNA_SOYBN : 11- 26: slqam DSSHVaLValLlrseG fehyr PCNA_XENLA : 41- 55: slqsm DSSHVsLVq-LtlrsD gfdty PCNA_YEAST : 41- 55: iaqav DDSRVlLVs-LeigvE afqey L 12: 24.5554 14( 14) L-A-P-K-[FIM]-x-[DEN]-[DEN] Occurences: 14(14) PCN2_DAUCA : 251- 258: yiryy LAPKIeEE deaan PCNA_CATRO : 251- 258: yirfy LAPKIeED deeqs PCNA_DAUCA : 251- 258: yirfy LAPKIeEE edesk PCNA_DROME : 251- 258: hiryy LAPKIeDN et PCNA_HUMAN : 251- 258: hlkyy LAPKIeDE egs PCNA_MOUSE : 251- 258: hlkyy LAPKIeDE eas PCNA_NPVAC : 244- 251: vlacf LAPKIvNN deeif PCNA_ORYSA : 251- 258: yirfy LAPKIeED eemks PCNA_PLAFK : 262- 269: fvkff LAPKMdDD mdnkd PCNA_RAT : 251- 258: hlkyy LAPKIeDE egs PCNA_SCHPO : 250- 257: flrfy LAPKIgEE dee PCNA_SOYBN : 221- 228: yvrfy LAPKIeED eedtk PCNA_XENLA : 251- 258: hvkyy LAPKIeDE eas PCNA_YEAST : 250- 257: flqff LAPKFnDE e M 13: 21.6009 14( 14) L-x(3,4)-L-x(2,4)-G-F-x(2)-[FY]-x(2)-[AD] Occurences: 14(14) PCN2_DAUCA : 47- 63: sshva LvavlLrse-GFehYrcD rnism PCN2_DAUCA : 47- 63: sshva Lvav-LlrseGFehYrcD rnism PCNA_CATRO : 47- 63: sshva LvallLrse-GFehYrcD rnpsm PCNA_CATRO : 47- 63: sshva Lval-LlrseGFehYrcD rnpsm PCNA_DAUCA : 47- 63: sshva LvavlLrse-GFehYrcD rnism PCNA_DAUCA : 47- 63: sshva Lvav-LlrseGFehYrcD rnism PCNA_DROME : 47- 63: nshvs LvsltLrsd-GFdkFrcD rnlsm PCNA_HUMAN : 47- 63: sshvs LvqltLrse-GFdtYrcD rnlam PCNA_MOUSE : 47- 63: sshvs LvqltLrse-GFdtYrcD rnlam PCNA_NPVAC : 47- 63: tshva LvslqLhae-GFkkYrcD rnvpl PCNA_ORYSA : 47- 63: sshva LvallLrse-GFehYrcD rnlsm PCNA_ORYSA : 47- 63: sshva Lval-LlrseGFehYrcD rnlsm PCNA_PLAFK : 47- 63: gnhvs LvslhLlds-GFshYrcD rervl PCNA_RAT : 47- 63: sshvs LvqltLrse-GFdtYrcD rnlam PCNA_SCHPO : 47- 63: sshva Lvsm-LiksdGFepYrcD rnial PCNA_SOYBN : 17- 33: sshva LvallLrse-GFehYrcD rnism PCNA_SOYBN : 17- 33: sshva Lval-LlrseGFehYrcD rnism PCNA_XENLA : 47- 63: sshvs LvqltLrsd-GFdtYrcD rnqsi PCNA_YEAST : 236- 251: seapa LfqfdLks--GFlqFflA pkfnd N 14: 21.2379 14( 14) D-[DENST]-S-x-[LV]-x-L-x(2,3)-L Occurences: 14(14) PCN2_DAUCA : 41- 51: slqam DSShVaLvavL lrseg PCNA_CATRO : 41- 50: slqam DSShVaLva-L llrse PCNA_CATRO : 41- 51: slqam DSShVaLvalL lrseg PCNA_DAUCA : 41- 51: slqam DSShVaLvavL lrseg PCNA_DROME : 41- 50: qlqam DNShVsLvs-L tlrsd PCNA_HUMAN : 41- 50: nlqsm DSShVsLvq-L tlrse PCNA_MOUSE : 41- 50: nlqsm DSShVsLvq-L tlrse PCNA_NPVAC : 41- 50: smqvm DTShVaLvs-L qlhae PCNA_ORYSA : 41- 50: slqam DSShVaLva-L llrse PCNA_ORYSA : 41- 51: slqam DSShVaLvalL lrseg PCNA_PLAFK : 31- 40: anvda DESgLkLqa-L dgnhv PCNA_RAT : 41- 50: nlqsm DSShVsLvq-L tlrse PCNA_SCHPO : 41- 51: slqam DSShVaLvsmL iksdg PCNA_SOYBN : 11- 20: slqam DSShVaLva-L llrse PCNA_SOYBN : 11- 21: slqam DSShVaLvalL lrseg PCNA_XENLA : 41- 50: slqsm DSShVsLvq-L tlrsd PCNA_YEAST : 41- 50: iaqav DDSrVlLvs-L eigve O 15: 20.5018 14( 14) H-x(0,1)-V-[AST]-L-x(2,3)-L-x(3)-[ADES] Occurences: 14(14) PCN2_DAUCA : 44- 55: amdss H-VALvavLlrsE gfehy PCNA_CATRO : 44- 54: amdss H-VALva-LllrS egfeh PCNA_CATRO : 44- 55: amdss H-VALvalLlrsE gfehy PCNA_DAUCA : 44- 55: amdss H-VALvavLlrsE gfehy PCNA_DROME : 44- 54: amdns H-VSLvs-LtlrS dgfdk PCNA_HUMAN : 44- 54: smdss H-VSLvq-LtlrS egfdt PCNA_MOUSE : 44- 54: smdss H-VSLvq-LtlrS egfdt PCNA_NPVAC : 44- 54: vmdts H-VALvs-LqlhA egfkk PCNA_ORYSA : 44- 54: amdss H-VALva-LllrS egfeh PCNA_ORYSA : 44- 55: amdss H-VALvalLlrsE gfehy PCNA_PLAFK : 44- 54: aldgn H-VSLvs-LhllD sgfsh PCNA_RAT : 44- 54: smdss H-VSLvq-LtlrS egfdt PCNA_SCHPO : 44- 55: amdss H-VALvsmLiksD gfepy PCNA_SOYBN : 14- 24: amdss H-VALva-LllrS egfeh PCNA_SOYBN : 14- 25: amdss H-VALvalLlrsE gfehy PCNA_XENLA : 44- 54: smdss H-VSLvq-LtlrS dgfdt PCNA_YEAST : 64- 76: eyrcd HpVTLgmdLtslS kilrc P 16: 20.3853 14( 14) A-P-K-[FIM]-x-[DEN]-[DEN] Occurences: 14(14) PCN2_DAUCA : 252- 258: iryyl APKIeEE deaan PCNA_CATRO : 252- 258: irfyl APKIeED deeqs PCNA_DAUCA : 252- 258: irfyl APKIeEE edesk PCNA_DROME : 252- 258: iryyl APKIeDN et PCNA_HUMAN : 252- 258: lkyyl APKIeDE egs PCNA_MOUSE : 252- 258: lkyyl APKIeDE eas PCNA_NPVAC : 245- 251: lacfl APKIvNN deeif PCNA_ORYSA : 252- 258: irfyl APKIeED eemks PCNA_PLAFK : 263- 269: vkffl APKMdDD mdnkd PCNA_RAT : 252- 258: lkyyl APKIeDE egs PCNA_SCHPO : 251- 257: lrfyl APKIgEE dee PCNA_SOYBN : 222- 228: vrfyl APKIeED eedtk PCNA_XENLA : 252- 258: vkyyl APKIeDE eas PCNA_YEAST : 251- 257: lqffl APKFnDE e Q 17: 18.8503 14( 14) K-L-M-x(2,4)-D-x(1,3)-L Occurences: 14(14) PCN2_DAUCA : 117- 126: sdfem KLMdi--DsehL gipes PCNA_CATRO : 117- 126: sdfem KLMdi--DsehL gipea PCNA_DAUCA : 117- 126: adfem KLMdi--DsehL gipea PCNA_DROME : 117- 126: sdyem KLMnl--DqehL gipet PCNA_HUMAN : 117- 126: sdyem KLMdl--DveqL gipeq PCNA_MOUSE : 117- 126: sdyem KLMdl--DveqL gipeq PCNA_NPVAC : 115- 124: ctytl KLMci--DvehL gipds PCNA_ORYSA : 117- 126: adfem KLMdi--DsehL gipds PCNA_PLAFK : 117- 126: tnfsl KLMsielDs--L nipdc PCNA_RAT : 117- 126: sdyem KLMdl--DveqL gipeq PCNA_SCHPO : 117- 126: sdydv KLMdi--DqehL gipdi PCNA_SOYBN : 87- 96: sdfem KLMdi--DsehL gipea PCNA_XENLA : 117- 126: sdyem KLMdl--DveqL gipeq PCNA_YEAST : 117- 126: aeysl KLMdidaDf--L kieel PCNA_YEAST : 117- 126: aeysl KLMdi--DadfL kieel R 18: 18.3999 14( 14) V-x-L-V-x(1,2)-L-x(4)-[DEGS] Occurences: 14(14) PCN2_DAUCA : 45- 56: mdssh VaLVavLlrseG fehyr PCNA_CATRO : 45- 55: mdssh VaLVa-LllrsE gfehy PCNA_CATRO : 45- 56: mdssh VaLValLlrseG fehyr PCNA_DAUCA : 45- 56: mdssh VaLVavLlrseG fehyr PCNA_DROME : 45- 55: mdnsh VsLVs-LtlrsD gfdkf PCNA_HUMAN : 45- 55: mdssh VsLVq-LtlrsE gfdty PCNA_MOUSE : 45- 55: mdssh VsLVq-LtlrsE gfdty PCNA_NPVAC : 45- 55: mdtsh VaLVs-LqlhaE gfkky PCNA_ORYSA : 45- 55: mdssh VaLVa-LllrsE gfehy PCNA_ORYSA : 45- 56: mdssh VaLValLlrseG fehyr PCNA_PLAFK : 45- 55: ldgnh VsLVs-LhlldS gfshy PCNA_RAT : 45- 55: mdssh VsLVq-LtlrsE gfdty PCNA_SCHPO : 45- 56: mdssh VaLVsmLiksdG fepyr PCNA_SOYBN : 15- 25: mdssh VaLVa-LllrsE gfehy PCNA_SOYBN : 15- 26: mdssh VaLValLlrseG fehyr PCNA_XENLA : 45- 55: mdssh VsLVq-LtlrsD gfdty PCNA_YEAST : 45- 55: vddsr VlLVs-LeigvE afqey S 19: 18.3999 14( 14) S-x-V-x-L-x(2,3)-L-x(4)-[DEGS] Occurences: 14(14) PCN2_DAUCA : 43- 56: qamds ShVaLvavLlrseG fehyr PCNA_CATRO : 43- 55: qamds ShVaLva-LllrsE gfehy PCNA_CATRO : 43- 56: qamds ShVaLvalLlrseG fehyr PCNA_DAUCA : 43- 56: qamds ShVaLvavLlrseG fehyr PCNA_DROME : 43- 55: qamdn ShVsLvs-LtlrsD gfdkf PCNA_HUMAN : 43- 55: qsmds ShVsLvq-LtlrsE gfdty PCNA_MOUSE : 43- 55: qsmds ShVsLvq-LtlrsE gfdty PCNA_NPVAC : 43- 55: qvmdt ShVaLvs-LqlhaE gfkky PCNA_ORYSA : 43- 55: qamds ShVaLva-LllrsE gfehy PCNA_ORYSA : 43- 56: qamds ShVaLvalLlrseG fehyr PCNA_PLAFK : 46- 58: dgnhv SlVsLhl-LdsgfS hyrcd PCNA_RAT : 43- 55: qsmds ShVsLvq-LtlrsE gfdty PCNA_SCHPO : 43- 56: qamds ShVaLvsmLiksdG fepyr PCNA_SOYBN : 13- 25: qamds ShVaLva-LllrsE gfehy PCNA_SOYBN : 13- 26: qamds ShVaLvalLlrseG fehyr PCNA_XENLA : 43- 55: qsmds ShVsLvq-LtlrsD gfdty PCNA_YEAST : 43- 55: qavdd SrVlLvs-LeigvE afqey T 20: 17.8999 24( 14) S-x(1,2)-V-x-L-x(2,3)-L-x(4)-[DEGS] Occurences: 24(14) PCN2_DAUCA : 42- 56: lqamd SshVaLvavLlrseG fehyr PCN2_DAUCA : 43- 56: qamds Sh-VaLvavLlrseG fehyr PCNA_CATRO : 42- 55: lqamd SshVaLva-LllrsE gfehy PCNA_CATRO : 42- 56: lqamd SshVaLvalLlrseG fehyr PCNA_CATRO : 43- 55: qamds Sh-VaLva-LllrsE gfehy PCNA_CATRO : 43- 56: qamds Sh-VaLvalLlrseG fehyr PCNA_DAUCA : 42- 56: lqamd SshVaLvavLlrseG fehyr PCNA_DAUCA : 43- 56: qamds Sh-VaLvavLlrseG fehyr PCNA_DROME : 43- 55: qamdn Sh-VsLvs-LtlrsD gfdkf PCNA_HUMAN : 42- 55: lqsmd SshVsLvq-LtlrsE gfdty PCNA_HUMAN : 43- 55: qsmds Sh-VsLvq-LtlrsE gfdty PCNA_MOUSE : 42- 55: lqsmd SshVsLvq-LtlrsE gfdty PCNA_MOUSE : 43- 55: qsmds Sh-VsLvq-LtlrsE gfdty PCNA_NPVAC : 43- 55: qvmdt Sh-VaLvs-LqlhaE gfkky PCNA_ORYSA : 42- 55: lqamd SshVaLva-LllrsE gfehy PCNA_ORYSA : 42- 56: lqamd SshVaLvalLlrseG fehyr PCNA_ORYSA : 43- 55: qamds Sh-VaLva-LllrsE gfehy PCNA_ORYSA : 43- 56: qamds Sh-VaLvalLlrseG fehyr PCNA_PLAFK : 46- 58: dgnhv Sl-VsLhl-LdsgfS hyrcd PCNA_RAT : 42- 55: lqsmd SshVsLvq-LtlrsE gfdty PCNA_RAT : 43- 55: qsmds Sh-VsLvq-LtlrsE gfdty PCNA_SCHPO : 42- 56: lqamd SshVaLvsmLiksdG fepyr PCNA_SCHPO : 43- 56: qamds Sh-VaLvsmLiksdG fepyr PCNA_SOYBN : 12- 25: lqamd SshVaLva-LllrsE gfehy PCNA_SOYBN : 12- 26: lqamd SshVaLvalLlrseG fehyr PCNA_SOYBN : 13- 25: qamds Sh-VaLva-LllrsE gfehy PCNA_SOYBN : 13- 26: qamds Sh-VaLvalLlrseG fehyr PCNA_XENLA : 42- 55: lqsmd SshVsLvq-LtlrsD gfdty PCNA_XENLA : 43- 55: qsmds Sh-VsLvq-LtlrsD gfdty PCNA_YEAST : 43- 55: qavdd Sr-VlLvs-LeigvE afqey Number of patterns evaluated by Pratt:3244 Total running time: 3 seconds