------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file PARATHYROID PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename PARATHYROID.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PTHR_CHICK 176 PTHR_HUMAN 177 PTHR_MOUSE 175 PTHR_RAT 177 PTHY_BOVIN 115 PTHY_CHICK 119 PTHY_HUMAN 115 PTHY_PIG 115 PTHY_RAT 115 Pratt run started at Thu Feb 6 20:27:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.0305 9( 9) G-x(4,5)-K-R-x-V-S-E-x-Q-x(2)-H-x(2)-G 2: 36.0305 11( 9) G-x(3,5)-K-x(0,1)-R-x-V-S-E-x-Q-x(2)-H-x(2)-G 3: 33.3604 9( 9) K-R-x-V-S-E-x-Q-x(2)-H-x(2)-G 4: 32.8604 13( 9) K-x(0,1)-R-x-V-S-E-x-Q-x(2)-H-x(2)-G 5: 29.1904 9( 9) R-x-V-S-E-x-Q-x(2)-H-x(2)-G 6: 25.0203 9( 9) V-S-E-x-Q-x(2)-H-x(2)-G 7: 20.8503 9( 9) S-E-x-Q-x(2)-H-x(2)-G 8: 16.6802 9( 9) E-x-Q-x(2)-H-x(2)-G 9: 15.1802 9( 9) A-x(4,5)-L-x(1,3)-K-x-K 10: 15.1802 12( 9) S-x(1,2)-G-x(3,5)-K-x(2)-V 11: 15.1802 9( 9) L-x(0,1)-Q-x(5)-V-x(1,3)-L 12: 15.1802 10( 9) R-x(1,3)-L-x(0,1)-Q-x(5)-V 13: 15.1802 9( 9) L-x(2,4)-K-x(1,2)-Q-D 14: 15.1802 9( 9) R-x(3,4)-R-x(3,5)-Q-x(2)-H 15: 14.6802 14( 9) G-x(3,5)-K-x(2)-V-x(2,4)-L 16: 12.5102 9( 9) Q-x(2)-H-x(2)-G 17: 12.0102 9( 9) L-x(1,2)-K-x-K 18: 12.0102 12( 9) A-x(3,4)-V-x(4)-K 19: 12.0102 12( 9) L-x(5)-K-x(0,1)-S 20: 12.0102 9( 9) K-E-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 93.6464 9( 9) G-x(4,5)-K-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST] B 2: 92.6464 11( 9) G-x(3,5)-K-x(0,1)-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST] C 3: 92.5666 9( 9) K-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] D 4: 92.0666 13( 9) K-x(0,1)-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] E 5: 88.3966 9( 9) R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] F 6: 81.0474 9( 9) V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] G 7: 76.8773 9( 9) S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] H 8: 72.7073 9( 9) E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] I 9: 68.5372 9( 9) Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] J 10: 31.8218 9( 9) R-x(3,4)-R-x(3,5)-Q-x-[LMV]-H-[DN]-x-[GV]-x(4)-[DPQST]-[ILMV]-x(2)-[QR] K 11: 29.3891 12( 9) G-x(3,5)-K-x-[ADS]-V-x(2,4)-L-[ILM]-[HK]-[ADN]-x-[GP] L 12: 26.4329 9( 9) L-x(2,4)-K-x(1,2)-Q-D-[LV]-[HR]-[NRS]-x-[FILV] M 13: 21.0067 11( 9) S-x(1,2)-G-x(3,5)-K-x-[ADS]-V-[DS] N 14: 20.9770 9( 9) A-x(4,5)-L-x(1,3)-K-[AGT]-K-[PS] O 15: 20.9513 10( 9) R-x(1,3)-L-x(0,1)-Q-x(5)-V-x(2)-[AGL]-x(3)-[AV] P 16: 20.5995 9( 9) L-x(0,1)-Q-x(5)-V-x(1,3)-L-x(4)-[APTV]-x-[RS] Q 17: 19.5449 10( 9) L-x(2)-[ADGS]-x-[GQS]-K-x(0,1)-S-[ILV] R 18: 17.8982 9( 9) A-x(3)-V-x(3)-[APST]-K-[PS] S 19: 17.8070 9( 9) L-x(1,2)-K-[AGT]-K-[PS] T 20: 15.1802 9( 9) R-x(3,4)-R-x(3,5)-Q-x(2)-H Best patterns with alignements: fitness hits(seqs) Pattern A 1: 93.6464 9( 9) G-x(4,5)-K-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST] Occurences: 9(9) PTHR_CHICK : 30- 77: grsve GisrrlKRAVSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtS evspn PTHR_HUMAN : 29- 76: grsve GlsrrlKRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_MOUSE : 29- 76: grsve GlgrrlKRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_RAT : 29- 76: grsve GlgrrlKRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHY_BOVIN : 25- 71: larsd Gksvk-KRAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaS iayrd PTHY_CHICK : 25- 71: ftnsd Grpmm-KRSVSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArT qrprn PTHY_HUMAN : 25- 71: ltksd Gksvk-KRSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaP laprd PTHY_PIG : 25- 71: larsd Gkpik-KRSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaS ivhrd PTHY_RAT : 25- 71: ltqad Gkpvk-KRAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQ maare B 2: 92.6464 11( 9) G-x(3,5)-K-x(0,1)-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST] Occurences: 11(9) PTHR_CHICK : 30- 77: grsve GisrrlK-RAVSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtS evspn PTHR_HUMAN : 29- 76: grsve GlsrrlK-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_MOUSE : 29- 76: grsve GlgrrlK-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_MOUSE : 31- 76: svegl Grrl--K-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_RAT : 29- 76: grsve GlgrrlK-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHR_RAT : 31- 76: svegl Grrl--K-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtS evspn PTHY_BOVIN : 25- 71: larsd Gksvk-K-RAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaS iayrd PTHY_BOVIN : 25- 71: larsd Gksv--KkRAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaS iayrd PTHY_CHICK : 25- 71: ftnsd Grpmm-K-RSVSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArT qrprn PTHY_HUMAN : 25- 71: ltksd Gksvk-K-RSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaP laprd PTHY_HUMAN : 25- 71: ltksd Gksv--KkRSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaP laprd PTHY_PIG : 25- 71: larsd Gkpik-K-RSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaS ivhrd PTHY_PIG : 25- 71: larsd Gkpi--KkRSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaS ivhrd PTHY_RAT : 25- 71: ltqad Gkpvk-K-RAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQ maare PTHY_RAT : 25- 71: ltqad Gkpv--KkRAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQ maare C 3: 92.5666 9( 9) K-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 36- 82: isrrl KRAVSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 35- 81: lsrrl KRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 35- 81: lgrrl KRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 35- 81: lgrrl KRAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 30- 76: gksvk KRAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 30- 76: grpmm KRSVSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 30- 76: gksvk KRSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 30- 76: gkpik KRSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 30- 76: gkpvk KRAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr D 4: 92.0666 13( 9) K-x(0,1)-R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 13(9) PTHR_CHICK : 36- 82: isrrl K-RAVSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 35- 81: lsrrl K-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 35- 81: lgrrl K-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 35- 81: lgrrl K-RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 29- 76: dgksv KkRAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_BOVIN : 30- 76: gksvk K-RAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 30- 76: grpmm K-RSVSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 29- 76: dgksv KkRSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_HUMAN : 30- 76: gksvk K-RSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 29- 76: dgkpi KkRSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_PIG : 30- 76: gkpik K-RSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 29- 76: dgkpv KkRAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr PTHY_RAT : 30- 76: gkpvk K-RAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr E 5: 88.3966 9( 9) R-[AS]-V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 37- 82: srrlk RAVSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 36- 81: srrlk RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 36- 81: grrlk RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 36- 81: grrlk RAVSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 31- 76: ksvkk RAVSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 31- 76: rpmmk RSVSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 31- 76: ksvkk RSVSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 31- 76: kpikk RSVSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 31- 76: kpvkk RAVSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr F 6: 81.0474 9( 9) V-S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 39- 82: rlkra VSEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 38- 81: rlkra VSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 38- 81: rlkra VSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 38- 81: rlkra VSEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 33- 76: vkkra VSEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 33- 76: mmkrs VSEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 33- 76: vkkrs VSEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 33- 76: ikkrs VSEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 33- 76: vkkra VSEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr G 7: 76.8773 9( 9) S-E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 40- 82: lkrav SEhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 39- 81: lkrav SEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 39- 81: lkrav SEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 39- 81: lkrav SEhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 34- 76: kkrav SEiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 34- 76: mkrsv SEmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 34- 76: kkrsv SEiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 34- 76: kkrsv SEiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 34- 76: kkrav SEiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr H 8: 72.7073 9( 9) E-x-Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 41- 82: kravs EhQLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 40- 81: kravs EhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 40- 81: kravs EhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 40- 81: kravs EhQLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 35- 76: kravs EiQFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 35- 76: krsvs EmQLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 35- 76: krsvs EiQLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 35- 76: krsvs EiQLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 35- 76: kravs EiQLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr I 9: 68.5372 9( 9) Q-[FL]-[LM]-H-[DN]-x-G-[EK]-x(3)-[DST]-[LMV]-[ER]-R-x(2)-[FW]-L-x(3)-[IL]-[AEQ]-[DEG]-[IV]-x-[NST]-x(4)-[AG]-x-[PQST]-x(4)-[DEN] Occurences: 9(9) PTHR_CHICK : 43- 82: avseh QLLHDkGKsiqDLRRriFLqnlIEGVnTaeirAtSevspN pkpat PTHR_HUMAN : 42- 81: avseh QLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpsp PTHR_MOUSE : 42- 81: avseh QLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHR_RAT : 42- 81: avseh QLLHDkGKsiqDLRRrfFLhhlIAEIhTaeirAtSevspN skpap PTHY_BOVIN : 37- 76: avsei QFMHNlGKhlsSMERveWLrkkLQDVhNfvalGaSiayrD gssqr PTHY_CHICK : 37- 76: svsem QLMHNlGEhrhTVERqdWLqmkLQDVhSaledArTqrprN kediv PTHY_HUMAN : 37- 76: svsei QLMHNlGKhlnSMERveWLrkkLQDVhNfvalGaPlaprD agsqr PTHY_PIG : 37- 76: svsei QLMHNlGKhlsSLERveWLrkkLQDVhNfvalGaSivhrD ggsqr PTHY_RAT : 37- 76: avsei QLMHNlGKhlaSVERmqWLrkkLQDVhNfvslGvQmaarE gsyqr J 10: 31.8218 9( 9) R-x(3,4)-R-x(3,5)-Q-x-[LMV]-H-[DN]-x-[GV]-x(4)-[DPQST]-[ILMV]-x(2)-[QR] Occurences: 9(9) PTHR_CHICK : 33- 58: vegis Rrlk-RavsehQlLHDkGksiqDLrrR iflqn PTHR_HUMAN : 32- 57: vegls Rrlk-RavsehQlLHDkGksiqDLrrR fflhh PTHR_MOUSE : 32- 57: veglg Rrlk-RavsehQlLHDkGksiqDLrrR fflhh PTHR_RAT : 32- 57: veglg Rrlk-RavsehQlLHDkGksiqDLrrR fflhh PTHY_BOVIN : 51- 75: lssme RvewlRkkl--QdVHNfValgaSIayR dgssq PTHY_CHICK : 26- 52: tnsdg RpmmkRsvsemQlMHNlGehrhTVerQ dwlqm PTHY_HUMAN : 51- 75: lnsme RvewlRkkl--QdVHNfValgaPLapR dagsq PTHY_PIG : 51- 75: lssle RvewlRkkl--QdVHNfValgaSIvhR dggsq PTHY_RAT : 51- 75: lasve RmqwlRkkl--QdVHNfVslgvQMaaR egsyq K 11: 29.3891 12( 9) G-x(3,5)-K-x-[ADS]-V-x(2,4)-L-[ILM]-[HK]-[ADN]-x-[GP] Occurences: 12(9) PTHR_CHICK : 30- 49: grsve GisrrlKrAVsehqLLHDkG ksiqd PTHR_HUMAN : 29- 48: grsve GlsrrlKrAVsehqLLHDkG ksiqd PTHR_MOUSE : 29- 48: grsve GlgrrlKrAVsehqLLHDkG ksiqd PTHR_MOUSE : 31- 48: svegl Grrl--KrAVsehqLLHDkG ksiqd PTHR_RAT : 29- 48: grsve GlgrrlKrAVsehqLLHDkG ksiqd PTHR_RAT : 31- 48: svegl Grrl--KrAVsehqLLHDkG ksiqd PTHY_BOVIN : 99- 114: hqksl Gead--KaDVdv--LIKAkP q PTHY_CHICK : 25- 43: ftnsd Grpmm-KrSVsemqLMHNlG ehrht PTHY_HUMAN : 25- 43: ltksd Gksvk-KrSVseiqLMHNlG khlns PTHY_PIG : 25- 43: larsd Gkpik-KrSVseiqLMHNlG khlss PTHY_PIG : 99- 114: hqksl Gead--KaAVdv--LIKAkP q PTHY_RAT : 25- 43: ltqad Gkpvk-KrAVseiqLMHNlG khlas L 12: 26.4329 9( 9) L-x(2,4)-K-x(1,2)-Q-D-[LV]-[HR]-[NRS]-x-[FILV] Occurences: 9(9) PTHR_CHICK : 45- 59: sehql LhdkgKsiQDLRRrI flqnl PTHR_HUMAN : 44- 58: sehql LhdkgKsiQDLRRrF flhhl PTHR_MOUSE : 44- 58: sehql LhdkgKsiQDLRRrF flhhl PTHR_RAT : 44- 58: sehql LhdkgKsiQDLRRrF flhhl PTHY_BOVIN : 55- 66: ervew Lrk--Kl-QDVHNfV algas PTHY_CHICK : 55- 66: erqdw Lqm--Kl-QDVHSaL edart PTHY_HUMAN : 55- 66: ervew Lrk--Kl-QDVHNfV algap PTHY_PIG : 55- 66: ervew Lrk--Kl-QDVHNfV algas PTHY_RAT : 55- 66: ermqw Lrk--Kl-QDVHNfV slgvq M 13: 21.0067 11( 9) S-x(1,2)-G-x(3,5)-K-x-[ADS]-V-[DS] Occurences: 11(9) PTHR_CHICK : 27- 40: psygr SveGisrrlKrAVS ehqll PTHR_HUMAN : 26- 39: pscgr SveGlsrrlKrAVS ehqll PTHR_MOUSE : 26- 39: psrgr SveGlgrrlKrAVS ehqll PTHR_RAT : 26- 39: psrgr SveGlgrrlKrAVS ehqll PTHY_BOVIN : 23- 34: cflar Sd-Gksvk-KrAVS eiqfm PTHY_BOVIN : 97- 107: eshqk Sl-Gead--KaDVD vlika PTHY_CHICK : 23- 34: cfftn Sd-Grpmm-KrSVS emqlm PTHY_HUMAN : 23- 34: cfltk Sd-Gksvk-KrSVS eiqlm PTHY_PIG : 23- 34: cflar Sd-Gkpik-KrSVS eiqlm PTHY_PIG : 97- 107: eshqk Sl-Gead--KaAVD vlika PTHY_RAT : 97- 107: dgnsk Sl-Gegd--KaDVD vlvka N 14: 20.9770 9( 9) A-x(4,5)-L-x(1,3)-K-[AGT]-K-[PS] Occurences: 9(9) PTHR_CHICK : 38- 51: rrlkr AvsehqLlhdKGKS iqdlr PTHR_HUMAN : 37- 50: rrlkr AvsehqLlhdKGKS iqdlr PTHR_MOUSE : 37- 50: rrlkr AvsehqLlhdKGKS iqdlr PTHR_RAT : 37- 50: rrlkr AvsehqLlhdKGKS iqdlr PTHY_BOVIN : 104- 114: geadk Advdv-Li--KAKP q PTHY_CHICK : 109- 119: idldk Aymnv-Lf--KTKP PTHY_HUMAN : 104- 114: geadk Advnv-Lt--KAKS q PTHY_PIG : 104- 114: geadk Aavdv-Li--KAKP q PTHY_RAT : 104- 114: gegdk Advdv-Lv--KAKS q O 15: 20.9513 10( 9) R-x(1,3)-L-x(0,1)-Q-x(5)-V-x(2)-[AGL]-x(3)-[AV] Occurences: 10(9) PTHR_CHICK : 57- 75: iqdlr RrifL-QnliegVntAeirA tsevs PTHR_CHICK : 58- 75: qdlrr Rif-L-QnliegVntAeirA tsevs PTHR_HUMAN : 3- 20: mq Rr--LvQqwsvaVflLsyaV pscgr PTHR_MOUSE : 3- 20: ml Rr--LvQqwsvlVflLsysV psrgr PTHR_RAT : 3- 20: ml Rr--LvQqwsvlVflLsysV psrgr PTHY_BOVIN : 56- 73: rvewl Rkk-L-QdvhnfValGasiA yrdgs PTHY_CHICK : 51- 69: rhtve RqdwL-QmklqdVhsAledA rtqrp PTHY_HUMAN : 56- 73: rvewl Rkk-L-QdvhnfValGaplA prdag PTHY_PIG : 56- 73: rvewl Rkk-L-QdvhnfValGasiV hrdgg PTHY_RAT : 56- 73: rmqwl Rkk-L-QdvhnfVslGvqmA aregs P 16: 20.5995 9( 9) L-x(0,1)-Q-x(5)-V-x(1,3)-L-x(4)-[APTV]-x-[RS] Occurences: 9(9) PTHR_CHICK : 6- 23: mmftk LfQqwsfaVf--LlsysVpS ygrsv PTHR_HUMAN : 5- 22: mqrr LvQqwsvaVf--LlsyaVpS cgrsv PTHR_MOUSE : 5- 22: mlrr LvQqwsvlVf--LlsysVpS rgrsv PTHR_MOUSE : 5- 23: mlrr LvQqwsvlVfl-LsysvPsR grsve PTHR_RAT : 5- 22: mlrr LvQqwsvlVf--LlsysVpS rgrsv PTHR_RAT : 5- 23: mlrr LvQqwsvlVfl-LsysvPsR grsve PTHY_BOVIN : 59- 75: wlrkk L-QdvhnfVa--LgasiAyR dgssq PTHY_CHICK : 55- 73: erqdw L-QmklqdVhsaLedarTqR prnke PTHY_HUMAN : 59- 75: wlrkk L-QdvhnfVa--LgaplApR dagsq PTHY_PIG : 59- 75: wlrkk L-QdvhnfVa--LgasiVhR dggsq PTHY_RAT : 59- 75: wlrkk L-QdvhnfVs--LgvqmAaR egsyq Q 17: 19.5449 10( 9) L-x(2)-[ADGS]-x-[GQS]-K-x(0,1)-S-[ILV] Occurences: 10(9) PTHR_CHICK : 44- 52: vsehq LlhDkGK-SI qdlrr PTHR_HUMAN : 43- 51: vsehq LlhDkGK-SI qdlrr PTHR_MOUSE : 43- 51: vsehq LlhDkGK-SI qdlrr PTHR_RAT : 43- 51: vsehq LlhDkGK-SI qdlrr PTHY_BOVIN : 20- 28: laicf LarSdGK-SV kkrav PTHY_BOVIN : 90- 98: kednv LveShQK-SL geadk PTHY_CHICK : 95- 104: llpeh LraAvQKkSI dldka PTHY_HUMAN : 20- 28: laicf LtkSdGK-SV kkrsv PTHY_PIG : 90- 98: kednv LveShQK-SL geadk PTHY_RAT : 90- 98: keenv LvdGnSK-SL gegdk R 18: 17.8982 9( 9) A-x(3)-V-x(3)-[APST]-K-[PS] Occurences: 9(9) PTHR_CHICK : 75- 85: taeir AtseVspnPKP atntk PTHR_HUMAN : 74- 84: taeir AtseVspnSKP spntk PTHR_MOUSE : 74- 84: taeir AtseVspnSKP apntk PTHR_RAT : 74- 84: taeir AtseVspnSKP apntk PTHY_BOVIN : 104- 114: geadk AdvdVlikAKP q PTHY_CHICK : 109- 119: idldk AymnVlfkTKP PTHY_HUMAN : 104- 114: geadk AdvnVltkAKS q PTHY_PIG : 104- 114: geadk AavdVlikAKP q PTHY_RAT : 104- 114: gegdk AdvdVlvkAKS q S 19: 17.8070 9( 9) L-x(1,2)-K-[AGT]-K-[PS] Occurences: 9(9) PTHR_CHICK : 45- 51: sehql LhdKGKS iqdlr PTHR_HUMAN : 44- 50: sehql LhdKGKS iqdlr PTHR_MOUSE : 44- 50: sehql LhdKGKS iqdlr PTHR_RAT : 44- 50: sehql LhdKGKS iqdlr PTHY_BOVIN : 109- 114: advdv Li-KAKP q PTHY_CHICK : 114- 119: aymnv Lf-KTKP PTHY_HUMAN : 109- 114: advnv Lt-KAKS q PTHY_PIG : 109- 114: aavdv Li-KAKP q PTHY_RAT : 109- 114: advdv Lv-KAKS q T 20: 15.1802 9( 9) R-x(3,4)-R-x(3,5)-Q-x(2)-H Occurences: 9(9) PTHR_CHICK : 33- 46: vegis Rrlk-RavsehQllH dkgks PTHR_HUMAN : 32- 45: vegls Rrlk-RavsehQllH dkgks PTHR_MOUSE : 32- 45: veglg Rrlk-RavsehQllH dkgks PTHR_RAT : 32- 45: veglg Rrlk-RavsehQllH dkgks PTHY_BOVIN : 51- 63: lssme RvewlRkkl--QdvH nfval PTHY_CHICK : 26- 40: tnsdg RpmmkRsvsemQlmH nlgeh PTHY_HUMAN : 51- 63: lnsme RvewlRkkl--QdvH nfval PTHY_PIG : 51- 63: lssle RvewlRkkl--QdvH nfval PTHY_RAT : 51- 63: lasve RmqwlRkkl--QdvH nfvsl Number of patterns evaluated by Pratt:1152 Total running time: 1 seconds