------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file P5CR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename P5CR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PROC_CORGL 270 PROC_ECOLI 269 PROC_HAEIN 271 PROC_HUMAN 319 PROC_METSM 251 PROC_MYCLE 294 PROC_PEA 273 PROC_PSEAE 272 PROC_SOYBN 274 PROC_TREPA 260 PROC_YEAST 286 PROH_BACSU 231 Pratt run started at Thu Feb 6 20:27:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 12( 12) L-x(3,4)-V-x(2,4)-G-x-T 2: 11.5102 27( 12) A-A-x(3,5)-A 3: 11.5102 28( 12) G-x(3,4)-A-x(1,2)-L 4: 11.5102 27( 12) G-x(3,4)-G-x(0,1)-L 5: 11.5102 19( 12) A-x(3)-L-x(0,2)-E 6: 11.5102 26( 12) A-x(2,3)-L-x(0,1)-G 7: 11.5102 21( 12) A-x(3)-L-x(0,2)-G 8: 11.5102 18( 12) S-x(1,2)-A-x(2,3)-L 9: 11.5102 16( 12) L-x(5)-A-x(0,2)-L 10: 11.5102 19( 12) G-x(3,5)-G-L 11: 11.5102 24( 12) G-x(4,5)-L-x(2,3)-L 12: 11.5102 25( 12) S-x(1,3)-P-A 13: 11.5102 21( 12) S-x(0,2)-P-A 14: 11.5102 20( 12) S-x(2,3)-A-x(3,4)-L 15: 11.5102 27( 12) A-x(1,2)-A-x(0,1)-L 16: 11.5102 26( 12) A-x(3,4)-L-x(0,1)-G 17: 11.5102 30( 12) A-x(1,2)-A-x(0,1)-A 18: 11.5102 36( 12) A-x(0,1)-A-x(3,4)-A 19: 11.5102 36( 12) A-x(2,3)-A-x(0,1)-A 20: 11.5102 24( 12) G-x(3,4)-A-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 17.0890 12( 12) L-x(3,4)-V-x(2,4)-G-x-T-x(3)-[AGILV] B 2: 13.3934 19( 12) A-x(1,2)-A-x(0,1)-L-x-[ADGSV] C 3: 11.5102 27( 12) A-A-x(3,5)-A D 4: 11.5102 28( 12) G-x(3,4)-A-x(1,2)-L E 5: 11.5102 27( 12) G-x(3,4)-G-x(0,1)-L F 6: 11.5102 19( 12) A-x(3)-L-x(0,2)-E G 7: 11.5102 26( 12) A-x(2,3)-L-x(0,1)-G H 8: 11.5102 21( 12) A-x(3)-L-x(0,2)-G I 9: 11.5102 18( 12) S-x(1,2)-A-x(2,3)-L J 10: 11.5102 16( 12) L-x(5)-A-x(0,2)-L K 11: 11.5102 19( 12) G-x(3,5)-G-L L 12: 11.5102 24( 12) G-x(4,5)-L-x(2,3)-L M 13: 11.5102 25( 12) S-x(1,3)-P-A N 14: 11.5102 21( 12) S-x(0,2)-P-A O 15: 11.5102 20( 12) S-x(2,3)-A-x(3,4)-L P 16: 11.5102 26( 12) A-x(3,4)-L-x(0,1)-G Q 17: 11.5102 30( 12) A-x(1,2)-A-x(0,1)-A R 18: 11.5102 36( 12) A-x(0,1)-A-x(3,4)-A S 19: 11.5102 36( 12) A-x(2,3)-A-x(0,1)-A T 20: 11.5102 24( 12) G-x(3,4)-A-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 17.0890 12( 12) L-x(3,4)-V-x(2,4)-G-x-T-x(3)-[AGILV] Occurences: 12(12) PROC_CORGL : 226- 241: kepse Lrag-VsspaGtTvaaI relee PROC_ECOLI : 225- 239: ehpga Lkdm-Vcsp-GgTtieA vrvle PROC_ECOLI : 225- 240: ehpga Lkdm-VcspgGtTieaV rvlee PROC_HAEIN : 226- 240: ialst Lren-Vtsk-GgTtaaA lavfd PROC_HAEIN : 226- 241: ialst Lren-VtskgGtTaaaL avfda PROC_HUMAN : 227- 242: qhpgq Lkdn-VsspgGaTihaL hvles PROC_METSM : 225- 240: yspde Link-VatknGiTqkgL dvldk PROC_MYCLE : 192- 206: llvea LvdagVav--GlTrqvA telaa PROC_PEA : 231- 245: khpgq Lkdd-Vtsp-GgTtiaG vhele PROC_PEA : 231- 246: khpgq Lkdd-VtspgGtTiagV helek PROC_PSEAE : 225- 240: vepae Lrrr-VtspnGtTeaaI ksfqa PROC_SOYBN : 232- 246: khpgq Lkdd-Vtsp-GgTtitG ihele PROC_SOYBN : 232- 247: khpgq Lkdd-VtspgGtTitgI helen PROC_TREPA : 223- 238: vhpaq Lkdr-VcspaGsTirgV lalee PROC_YEAST : 240- 254: ahpsv Lkhq-Vctp-GgTtiaG lcvme PROC_YEAST : 240- 255: ahpsv Lkhq-VctpgGtTiagL cvmee PROH_BACSU : 81- 94: iqphq Lils-Vla--GiTtsfI eqsll B 2: 13.3934 19( 12) A-x(1,2)-A-x(0,1)-L-x-[ADGSV] Occurences: 19(12) PROC_CORGL : 110- 116: amees As-AgLpV vrvmp PROC_ECOLI : 187- 194: fieam AdaAvLgG mpraq PROC_HAEIN : 43- 50: neekr AffAnLdV atsen PROC_HAEIN : 238- 243: kggtt Aa-A-LaV fdaqh PROC_HUMAN : 181- 187: sgpay AftA-LdA ladgg PROC_HUMAN : 184- 190: ayaft AldA-LaD ggvkm PROC_HUMAN : 207- 212: avrlg Aq-A-LlG aakml PROC_HUMAN : 207- 213: avrlg Aq-AlLgA akmll PROC_METSM : 176- 182: ascmp AfiA-LgV dlfag PROC_MYCLE : 128- 133: rampn Aa-A-LvG agvtv PROC_MYCLE : 232- 239: qdrhs AevApLgA qvdvp PROC_PEA : 188- 194: ayiyl AieA-LaD ggvaa PROC_PEA : 218- 225: tvlga AsmAtLsG khpgq PROC_PSEAE : 212- 218: talga AqmA-LsS evepa PROC_SOYBN : 189- 195: ayvyl AieA-LaD ggvaa PROC_TREPA : 98- 104: gmsca AyeA-LfA adphq PROC_YEAST : 182- 188: eknmd AatA-LvG sgpaf PROC_YEAST : 183- 188: knmda At-A-LvG sgpaf PROH_BACSU : 65- 71: mkpkd AenA-LsS lksri PROH_BACSU : 136- 141: dlkkl Ae-A-LlG cmgev C 3: 11.5102 27( 12) A-A-x(3,5)-A Occurences: 27(12) PROC_CORGL : 98- 104: vvvsm AAgisi-A amees PROC_CORGL : 98- 105: vvvsm AAgisiaA meesa PROC_CORGL : 104- 110: agisi AAmees-A saglp PROC_CORGL : 256- 261: gafyr AAqac--A drsee PROC_ECOLI : 250- 255: ekgfr AAvie--A mtkcm PROC_HAEIN : 170- 177: mhavt AAsgsspA yfflm PROC_HAEIN : 239- 246: ggtta AAlavfdA qhfnq PROC_HUMAN : 21- 26: akgft AAgvl--A ahkim PROC_HUMAN : 21- 27: akgft AAgvla-A hkima PROC_HUMAN : 26- 32: aagvl AAhkim-A sspdm PROC_METSM : 170- 176: eiati AAscmp-A fialg PROC_MYCLE : 88- 95: dlvqa AAvandsA eqvlv PROC_MYCLE : 128- 134: rampn AAalvg-A gvtvl PROC_MYCLE : 129- 134: ampna AAlvg--A gvtvl PROC_MYCLE : 210- 215: vatel AAqtm--A gsaam PROC_MYCLE : 245- 250: qvdvp AAqlr--A titsp PROC_MYCLE : 277- 282: rmvvd AAvqa--A kirse PROC_PEA : 130- 135: mpntp AAvgq--A asvms PROC_PEA : 130- 136: mpntp AAvgqa-A svmsl PROC_PEA : 144- 150: mslgg AAteed-A nlisq PROC_PSEAE : 28- 33: aqgvp AAqir--A sdpga PROC_PSEAE : 96- 102: livsi AAgipc-A sleaw PROC_PSEAE : 140- 146: naqvs AAqceq-A gqlls PROC_PSEAE : 238- 245: ngtte AAiksfqA ngfea PROC_PSEAE : 258- 264: eqaln AAsqrs-A elaeq PROC_SOYBN : 131- 136: mpntp AAvgq--A asvms PROC_SOYBN : 131- 137: mpntp AAvgqa-A svmsl PROC_TREPA : 97- 104: agmsc AAyealfA adphq PROC_TREPA : 177- 183: capaf AAqfie-A ladag PROC_YEAST : 27- 32: ynapk AAdet--A aafyp PROC_YEAST : 27- 33: ynapk AAdeta-A afyps PROC_YEAST : 27- 34: ynapk AAdetaaA fypsk PROH_BACSU : 226- 231: pngtt AAgle--A D 4: 11.5102 28( 12) G-x(3,4)-A-x(1,2)-L Occurences: 28(12) PROC_CORGL : 137- 145: stvtk GryvdAeqL eqvkd PROC_CORGL : 174- 180: vtams Gssp-Ay-L flvte PROC_ECOLI : 11- 18: gfigc GnmgkAi-L gglia PROC_HAEIN : 12- 20: afigg GnmaqAiiL gllkq PROC_HAEIN : 126- 132: tpalv Gegm-Ag-L fapkn PROC_HAEIN : 234- 241: nvtsk GgttaAa-L avfda PROC_HAEIN : 234- 241: nvtsk Ggtt-AaaL avfda PROC_HAEIN : 235- 241: vtskg Gtta-Aa-L avfda PROC_HUMAN : 4- 11: msv Gfig-AgqL afala PROC_HUMAN : 7- 15: svgfi GagqlAfaL akgft PROC_HUMAN : 18- 25: falak Gfta-AgvL aahki PROC_METSM : 181- 189: afial GvdlfAgeL eekcn PROC_MYCLE : 14- 21: aiigg GsigeAl-L sgllr PROC_MYCLE : 256- 263: titsp GgttaAa-L reler PROC_MYCLE : 256- 263: titsp Ggtt-AaaL reler PROC_MYCLE : 257- 263: itspg Gtta-Aa-L reler PROC_PEA : 195- 201: ealad Ggva-Ag-L prdla PROC_PEA : 216- 223: sqtvl GaasmAt-L sgkhp PROC_PSEAE : 9- 17: riafi GagnmAasL igglr PROC_PSEAE : 11- 17: afiga Gnma-As-L igglr PROC_PSEAE : 98- 104: vsiaa Gipc-As-L eawlg PROC_SOYBN : 151- 157: ateed Gnii-Aq-L fgsig PROC_SOYBN : 196- 202: ealad Ggva-Ag-L prdls PROC_TREPA : 217- 223: liqhs Gvhp-Aq-L kdrvc PROC_YEAST : 11- 18: ailgc GvmgqAl-L saiyn PROC_YEAST : 188- 195: atalv Gsgp-AfvL lmles PROC_YEAST : 248- 255: qvctp GgttiAg-L cvmee PROC_YEAST : 249- 255: vctpg Gtti-Ag-L cvmee PROH_BACSU : 116- 124: tssmi GasatAiaL gkyvs PROH_BACSU : 223- 229: itspn Gtta-Ag-L ea E 5: 11.5102 27( 12) G-x(3,4)-G-x(0,1)-L Occurences: 27(12) PROC_CORGL : 191- 196: aliea Gvnl-G-L prata PROC_ECOLI : 14- 21: gcgnm GkailGgL iasgq PROC_ECOLI : 219- 225: mvlet Gehp-GaL kdmvc PROC_HAEIN : 126- 132: tpalv GegmaG-L fapkn PROC_HUMAN : 4- 11: msv GfigaGqL afala PROC_HUMAN : 18- 25: falak GftaaGvL aahki PROC_HUMAN : 191- 197: dalad GgvkmG-L prrla PROC_HUMAN : 192- 197: aladg Gvkm-G-L prrla PROC_METSM : 7- 14: nlgii GygniGeL lsqni PROC_METSM : 234- 240: vatkn GitqkG-L dvldk PROC_MYCLE : 196- 201: alvda Gvav-G-L trqva PROC_PEA : 28- 35: esiak GasrsGvL pssri PROC_PEA : 195- 201: ealad GgvaaG-L prdla PROC_PEA : 196- 201: aladg Gvaa-G-L prdla PROC_PEA : 225- 231: matls Gkhp-GqL kddvt PROC_PEA : 252- 258: helek Ggfr-GtL mnavv PROC_PSEAE : 190- 195: amtda Gekl-G-L sreta PROC_SOYBN : 28- 35: esiar GavrsGvL ppsri PROC_SOYBN : 196- 202: ealad GgvaaG-L prdls PROC_SOYBN : 197- 202: aladg Gvaa-G-L prdls PROC_SOYBN : 226- 232: mvsqt Gkhp-GqL kddvt PROC_SOYBN : 253- 259: helen Ggfr-GtL mnavv PROC_TREPA : 188- 193: alada Gvry-G-L ardqa PROC_TREPA : 232- 239: vcspa GstirGvL aleeq PROC_YEAST : 249- 255: vctpg GttiaG-L cvmee PROH_BACSU : 179- 184: fiekt Geea-G-L dkqls PROH_BACSU : 223- 229: itspn GttaaG-L ea F 6: 11.5102 19( 12) A-x(3)-L-x(0,2)-E Occurences: 19(12) PROC_CORGL : 178- 185: sgssp AylfLvtE aliea PROC_CORGL : 240- 245: gttva AireL--E esgir PROC_CORGL : 240- 246: gttva AireLe-E sgirg PROC_ECOLI : 212- 217: avmgs AkmvL--E tgehp PROC_ECOLI : 239- 244: gttie AvrvL--E ekgfr PROC_ECOLI : 239- 245: gttie AvrvLe-E kgfra PROC_HAEIN : 177- 184: sgssp AyffLmlE amqka PROC_HAEIN : 222- 228: enpqi AlstLr-E nvtsk PROC_HUMAN : 214- 221: allga AkmlLhsE qhpgq PROC_HUMAN : 241- 246: gatih AlhvL--E sggfr PROC_METSM : 97- 102: iihtc AgtdL--E fkdcg PROC_MYCLE : 183- 190: sgsgp AyffLlvE alvda PROC_MYCLE : 218- 223: tmags AamlL--E rmdqd PROC_MYCLE : 262- 267: gttaa AlreL--E rgglr PROC_PEA : 183- 190: sgsgp AyiyLaiE aladg PROC_PSEAE : 212- 219: talga AqmaLssE vepae PROC_SOYBN : 184- 191: sgsgp AyvyLaiE aladg PROC_TREPA : 202- 207: qayrl AahmL--E gtaal PROC_YEAST : 192- 199: vgsgp AfvlLmlE slmes PROC_YEAST : 219- 224: eskec AmkvL--E gtvkm PROH_BACSU : 200- 206: qtllg AakmLm-E tgehp G 7: 11.5102 26( 12) A-x(2,3)-L-x(0,1)-G Occurences: 26(12) PROC_CORGL : 190- 195: ealie AgvnL-G lprat PROC_ECOLI : 106- 110: tldql Ara-L-G hdrki PROC_ECOLI : 189- 193: eamad Aav-L-G gmpra PROC_ECOLI : 189- 194: eamad Aav-LgG mpraq PROC_HAEIN : 17- 21: gnmaq Aii-L-G llkqg PROC_HAEIN : 146- 151: nyrtf AqdlL-G avgrt PROC_HAEIN : 146- 151: nyrtf Aqd-LlG avgrt PROC_HUMAN : 169- 175: edlid AvtgLsG sgpay PROC_HUMAN : 202- 206: lprrl Avr-L-G aqall PROC_HUMAN : 207- 212: avrlg AqalL-G aakml PROC_HUMAN : 207- 212: avrlg Aqa-LlG aakml PROC_METSM : 176- 181: ascmp AfiaL-G vdlfa PROC_MYCLE : 128- 133: rampn Aaa-LvG agvtv PROC_PEA : 173- 179: dkffd AitgLsG sgpay PROC_PSEAE : 14- 19: gagnm Aas-LiG glraq PROC_PSEAE : 189- 194: qamtd AgekL-G lsret PROC_PSEAE : 267- 271: rsael Aeq-L-G q PROC_SOYBN : 174- 180: ekyfd AitgLsG sgpay PROC_TREPA : 202- 208: qayrl AahmLeG taali PROC_TREPA : 203- 208: ayrla Ahm-LeG taali PROC_YEAST : 83- 89: savee AsvvLlG tkpfl PROC_YEAST : 95- 101: tkpfl AeevLnG vksvi PROC_YEAST : 182- 188: eknmd AataLvG sgpaf PROC_YEAST : 183- 188: knmda Ata-LvG sgpaf PROC_YEAST : 219- 225: eskec AmkvLeG tvkmv PROC_YEAST : 278- 282: eaarv Asq-L-G qkkk PROH_BACSU : 121- 125: gasat Aia-L-G kyvse PROH_BACSU : 136- 141: dlkkl AealL-G cmgev PROH_BACSU : 136- 141: dlkkl Aea-LlG cmgev PROH_BACSU : 194- 199: srsig AqtlL-G aakml PROH_BACSU : 194- 199: srsig Aqt-LlG aakml H 8: 11.5102 21( 12) A-x(3)-L-x(0,2)-G Occurences: 21(12) PROC_CORGL : 190- 195: ealie AgvnL--G lprat PROC_ECOLI : 212- 219: avmgs AkmvLetG ehpga PROC_HAEIN : 146- 151: nyrtf AqdlL--G avgrt PROC_HUMAN : 169- 175: edlid AvtgLs-G sgpay PROC_HUMAN : 184- 191: ayaft AldaLadG gvkmg PROC_HUMAN : 207- 212: avrlg AqalL--G aakml PROC_HUMAN : 241- 248: gatih AlhvLesG gfrsl PROC_METSM : 176- 181: ascmp AfiaL--G vdlfa PROC_MYCLE : 262- 269: gttaa AlreLerG glrmv PROC_PEA : 173- 179: dkffd AitgLs-G sgpay PROC_PEA : 188- 195: ayiyl AieaLadG gvaag PROC_PSEAE : 189- 194: qamtd AgekL--G lsret PROC_SOYBN : 174- 180: ekyfd AitgLs-G sgpay PROC_SOYBN : 189- 196: ayvyl AieaLadG gvaag PROC_TREPA : 202- 208: qayrl AahmLe-G taali PROC_YEAST : 83- 89: savee AsvvLl-G tkpfl PROC_YEAST : 95- 101: tkpfl AeevLn-G vksvi PROC_YEAST : 182- 188: eknmd AataLv-G sgpaf PROC_YEAST : 219- 225: eskec AmkvLe-G tvkmv PROH_BACSU : 136- 141: dlkkl AealL--G cmgev PROH_BACSU : 194- 199: srsig AqtlL--G aakml I 9: 11.5102 18( 12) S-x(1,2)-A-x(2,3)-L Occurences: 18(12) PROC_CORGL : 175- 182: tamsg SspAylfL vteal PROC_CORGL : 176- 182: amsgs Sp-AylfL vteal PROC_ECOLI : 95- 102: dslvv SiaAgvtL dqlar PROC_HAEIN : 174- 181: taasg SspAyffL mleam PROC_HAEIN : 175- 181: aasgs Sp-AyffL mleam PROC_HUMAN : 294- 300: kvkld Sp-AgtaL spsgh PROC_METSM : 210- 215: aetln St-Ayi-L kediy PROC_MYCLE : 180- 187: tavsg SgpAyffL lveal PROC_MYCLE : 217- 222: qtmag Sa-Aml-L ermdq PROC_PEA : 102- 109: dkllv SvaAgikL kdlqe PROC_PEA : 180- 187: tglsg SgpAyiyL aieal PROC_PSEAE : 174- 181: tavsg SgpAyffL lmqam PROC_SOYBN : 103- 110: hkllv SvaAgtkL kdlqe PROC_SOYBN : 181- 188: tglsg SgpAyvyL aieal PROC_TREPA : 95- 102: scagm ScaAyeaL faadp PROC_YEAST : 189- 195: talvg SgpAfv-L lmles PROC_YEAST : 189- 196: talvg SgpAfvlL mlesl PROH_BACSU : 118- 124: smiga SatAia-L gkyvs PROH_BACSU : 191- 197: kqlsr SigAqt-L lgaak PROH_BACSU : 191- 198: kqlsr SigAqtlL gaakm J 10: 11.5102 16( 12) L-x(5)-A-x(0,2)-L Occurences: 16(12) PROC_CORGL : 180- 187: sspay LflvteA--L ieagv PROC_ECOLI : 102- 109: aagvt LdqlarA--L ghdrk PROC_HAEIN : 124- 132: pntpa LvgegmAg-L fapkn PROC_HAEIN : 183- 190: yfflm LeamqkA--L ikmni PROC_HUMAN : 201- 210: glprr LavrlgAqaL lgaak PROC_METSM : 180- 189: pafia LgvdlfAgeL eekcn PROC_MYCLE : 192- 201: llvea LvdagvAvgL trqva PROC_PEA : 192- 201: laiea LadggvAagL prdla PROC_PEA : 215- 223: asqtv LgaasmAt-L sgkhp PROC_PSEAE : 150- 157: qagql LsavgiA--L wldde PROC_PSEAE : 150- 159: qagql LsavgiAlwL ddeaq PROC_PSEAE : 209- 216: tlqta LgaaqmA--L sseve PROC_SOYBN : 193- 202: laiea LadggvAagL prdls PROC_TREPA : 137- 145: earht LhhdehAa-L lavlr PROC_TREPA : 137- 146: earht LhhdehAalL avlrt PROC_YEAST : 186- 195: daata LvgsgpAfvL lmles PROH_BACSU : 132- 139: yvsed LkklaeA--L lgcmg PROH_BACSU : 132- 140: yvsed LkklaeAl-L gcmge PROH_BACSU : 188- 197: gldkq LsrsigAqtL lgaak K 11: 11.5102 19( 12) G-x(3,5)-G-L Occurences: 19(12) PROC_CORGL : 13- 20: gggqi GealvsGL iaanm PROC_CORGL : 191- 196: aliea Gvnl--GL prata PROC_ECOLI : 14- 21: gcgnm GkailgGL iasgq PROC_HAEIN : 126- 132: tpalv Gegma-GL fapkn PROC_HUMAN : 191- 197: dalad Ggvkm-GL prrla PROC_HUMAN : 192- 197: aladg Gvkm--GL prrla PROC_METSM : 234- 240: vatkn Gitqk-GL dvldk PROC_MYCLE : 17- 24: gggsi GeallsGL lragr PROC_MYCLE : 196- 201: alvda Gvav--GL trqva PROC_PEA : 195- 201: ealad Ggvaa-GL prdla PROC_PEA : 196- 201: aladg Gvaa--GL prdla PROC_PSEAE : 190- 195: amtda Gekl--GL sreta PROC_SOYBN : 196- 202: ealad Ggvaa-GL prdls PROC_SOYBN : 197- 202: aladg Gvaa--GL prdls PROC_TREPA : 188- 193: alada Gvry--GL ardqa PROC_YEAST : 248- 255: qvctp GgttiaGL cvmee PROC_YEAST : 249- 255: vctpg Gttia-GL cvmee PROH_BACSU : 179- 184: fiekt Geea--GL dkqls PROH_BACSU : 223- 229: itspn Gttaa-GL ea L 12: 11.5102 24( 12) G-x(4,5)-L-x(2,3)-L Occurences: 24(12) PROC_CORGL : 10- 20: avigg GqigeaLvsgL iaanm PROC_ECOLI : 99- 109: vsiaa GvtldqLaraL ghdrk PROC_HAEIN : 98- 107: isiaa GisterLna-L ipsvk PROC_HUMAN : 191- 201: dalad GgvkmgLprrL avrlg PROC_HUMAN : 192- 201: aladg Gvkmg-LprrL avrlg PROC_HUMAN : 196- 205: ggvkm Glprr-LavrL gaqal PROC_HUMAN : 236- 245: vsspg GatihaLhv-L esggf PROC_HUMAN : 304- 313: alsps Ghtkl-LprsL apagk PROC_METSM : 234- 243: vatkn GitqkgLdv-L dkrpa PROC_MYCLE : 14- 24: aiigg GsigeaLlsgL lragr PROC_MYCLE : 105- 115: vtvaa GvtityLeskL pagtp PROC_MYCLE : 257- 266: itspg GttaaaLre-L erggl PROC_PEA : 195- 205: ealad GgvaagLprdL alsla PROC_PEA : 196- 205: aladg Gvaag-LprdL alsla PROC_PEA : 200- 209: ggvaa Glprd-LalsL asqtv PROC_PSEAE : 11- 21: afiga GnmaasLiggL raqgv PROC_PSEAE : 98- 108: vsiaa GipcasLeawL gqprp PROC_SOYBN : 196- 206: ealad GgvaagLprdL slsla PROC_SOYBN : 197- 206: aladg Gvaag-LprdL slsla PROC_SOYBN : 201- 210: ggvaa Glprd-LslsL asqtv PROC_TREPA : 110- 120: adphq GirhlsLlpnL pcqva PROC_YEAST : 190- 198: alvgs Gpafv-Llm-L eslme PROH_BACSU : 39- 48: lelqy Gikga-LpnqL ciedm PROH_BACSU : 179- 188: fiekt Geeag-LdkqL srsig M 13: 11.5102 25( 12) S-x(1,3)-P-A Occurences: 25(12) PROC_CORGL : 173- 178: avtam SgssPA ylflv PROC_CORGL : 175- 178: tamsg Ss--PA ylflv PROC_CORGL : 231- 234: lragv Ss--PA gttva PROC_ECOLI : 172- 177: pvvgv SgssPA yvfmf PROC_ECOLI : 174- 177: vgvsg Ss--PA yvfmf PROC_HAEIN : 172- 177: avtaa SgssPA yfflm PROC_HAEIN : 174- 177: taasg Ss--PA yfflm PROC_HUMAN : 109- 114: iekkl SafrPA prvir PROC_HUMAN : 174- 179: avtgl SgsgPA yafta PROC_HUMAN : 176- 179: tglsg Sg--PA yafta PROC_HUMAN : 312- 316: kllpr Sla-PA gkd PROC_METSM : 172- 176: atiaa Scm-PA fialg PROC_MYCLE : 113- 117: ityle Skl-PA gtpvv PROC_MYCLE : 178- 183: avtav SgsgPA yffll PROC_MYCLE : 180- 183: tavsg Sg--PA yffll PROC_PEA : 178- 183: aitgl SgsgPA yiyla PROC_PEA : 180- 183: tglsg Sg--PA yiyla PROC_PSEAE : 172- 177: avtav SgsgPA yffll PROC_PSEAE : 174- 177: tavsg Sg--PA yffll PROC_PSEAE : 218- 223: qmals SevePA elrrr PROC_SOYBN : 179- 184: aitgl SgsgPA yvyla PROC_SOYBN : 181- 184: tglsg Sg--PA yvyla PROC_TREPA : 216- 221: aliqh SgvhPA qlkdr PROC_YEAST : 189- 192: talvg Sg--PA fvllm PROH_BACSU : 163- 166: tgiag Sg--PA yfyyl N 14: 11.5102 21( 12) S-x(0,2)-P-A Occurences: 21(12) PROC_CORGL : 175- 178: tamsg Ss-PA ylflv PROC_CORGL : 176- 178: amsgs S--PA ylflv PROC_CORGL : 231- 234: lragv Ss-PA gttva PROC_CORGL : 232- 234: ragvs S--PA gttva PROC_ECOLI : 174- 177: vgvsg Ss-PA yvfmf PROC_ECOLI : 175- 177: gvsgs S--PA yvfmf PROC_HAEIN : 174- 177: taasg Ss-PA yfflm PROC_HAEIN : 175- 177: aasgs S--PA yfflm PROC_HUMAN : 176- 179: tglsg Sg-PA yafta PROC_HUMAN : 278- 280: dqeqv S--PA aikkt PROC_HUMAN : 294- 296: kvkld S--PA gtals PROC_HUMAN : 312- 316: kllpr SlaPA gkd PROC_METSM : 172- 176: atiaa ScmPA fialg PROC_MYCLE : 113- 117: ityle SklPA gtpvv PROC_MYCLE : 180- 183: tavsg Sg-PA yffll PROC_PEA : 180- 183: tglsg Sg-PA yiyla PROC_PSEAE : 174- 177: tavsg Sg-PA yffll PROC_SOYBN : 181- 184: tglsg Sg-PA yvyla PROC_TREPA : 229- 231: kdrvc S--PA gstir PROC_YEAST : 189- 192: talvg Sg-PA fvllm PROH_BACSU : 163- 166: tgiag Sg-PA yfyyl O 15: 11.5102 20( 12) S-x(2,3)-A-x(3,4)-L Occurences: 20(12) PROC_CORGL : 175- 182: tamsg Ssp-Aylf-L vteal PROC_ECOLI : 95- 102: dslvv Sia-Agvt-L dqlar PROC_HAEIN : 59- 67: ennvg SaikAevv-L lavkp PROC_HAEIN : 59- 68: ennvg SaikAevvlL avkpq PROC_HAEIN : 174- 181: taasg Ssp-Ayff-L mleam PROC_HUMAN : 233- 242: kdnvs SpggAtihaL hvles PROC_METSM : 172- 180: atiaa ScmpAfia-L gvdlf PROC_MYCLE : 15- 24: iiggg SigeAllsgL lragr PROC_MYCLE : 180- 187: tavsg Sgp-Ayff-L lveal PROC_MYCLE : 180- 188: tavsg Sgp-AyfflL vealv PROC_PEA : 102- 109: dkllv Sva-Agik-L kdlqe PROC_PEA : 180- 187: tglsg Sgp-Ayiy-L aieal PROC_PSEAE : 174- 181: tavsg Sgp-Ayff-L lmqam PROC_PSEAE : 174- 182: tavsg Sgp-AyfflL mqamt PROC_PSEAE : 196- 205: eklgl SretAsrltL qtalg PROC_SOYBN : 103- 110: hkllv Sva-Agtk-L kdlqe PROC_SOYBN : 181- 188: tglsg Sgp-Ayvy-L aieal PROC_SOYBN : 207- 216: lprdl SlslAsqtvL gaasm PROC_TREPA : 95- 102: scagm Sca-Ayea-L faadp PROC_YEAST : 189- 196: talvg Sgp-Afvl-L mlesl PROC_YEAST : 215- 223: iplqe SkecAmkv-L egtvk PROH_BACSU : 163- 171: tgiag Sgp-AyfyyL mefie PROH_BACSU : 191- 198: kqlsr Sig-Aqtl-L gaakm P 16: 11.5102 26( 12) A-x(3,4)-L-x(0,1)-G Occurences: 26(12) PROC_CORGL : 190- 195: ealie Agvn-L-G lprat PROC_ECOLI : 23- 30: lggli AsgqvLpG qiwvy PROC_ECOLI : 187- 193: fieam AdaavL-G gmpra PROC_ECOLI : 187- 194: fieam AdaavLgG mpraq PROC_HAEIN : 15- 21: gggnm AqaiiL-G llkqg PROC_HAEIN : 146- 151: nyrtf Aqdl-L-G avgrt PROC_HUMAN : 169- 175: edlid Avtg-LsG sgpay PROC_HUMAN : 207- 212: avrlg Aqal-L-G aakml PROC_METSM : 176- 181: ascmp Afia-L-G vdlfa PROC_MYCLE : 232- 238: qdrhs AevapL-G aqvdv PROC_PEA : 136- 142: avgqa AsvmsL-G gaate PROC_PEA : 136- 143: avgqa AsvmsLgG aatee PROC_PEA : 173- 179: dkffd Aitg-LsG sgpay PROC_PEA : 210- 216: lalsl AsqtvL-G aasma PROC_PEA : 218- 225: tvlga AsmatLsG khpgq PROC_PSEAE : 189- 194: qamtd Agek-L-G lsret PROC_SOYBN : 8- 14: ifpip AesytL-G figag PROC_SOYBN : 137- 143: avgqa AsvmsL-G gsate PROC_SOYBN : 137- 144: avgqa AsvmsLgG satee PROC_SOYBN : 174- 180: ekyfd Aitg-LsG sgpay PROC_SOYBN : 211- 217: lslsl AsqtvL-G aasmv PROC_TREPA : 202- 208: qayrl Aahm-LeG taali PROC_YEAST : 83- 89: savee AsvvlL-G tkpfl PROC_YEAST : 83- 89: savee Asvv-LlG tkpfl PROC_YEAST : 95- 101: tkpfl Aeev-LnG vksvi PROC_YEAST : 182- 188: eknmd Aata-LvG sgpaf PROC_YEAST : 219- 225: eskec Amkv-LeG tvkmv PROH_BACSU : 119- 125: migas AtaiaL-G kyvse PROH_BACSU : 136- 141: dlkkl Aeal-L-G cmgev PROH_BACSU : 194- 199: srsig Aqtl-L-G aakml Q 17: 11.5102 30( 12) A-x(1,2)-A-x(0,1)-A Occurences: 30(12) PROC_CORGL : 256- 261: gafyr AaqAcA drsee PROC_CORGL : 257- 261: afyra Aq-AcA drsee PROC_ECOLI : 185- 189: fmfie Am-AdA avlgg PROC_ECOLI : 187- 190: fieam Ad-A-A vlggm PROC_HAEIN : 167- 171: etqmh AvtA-A sgssp PROC_HAEIN : 238- 242: kggtt Aa-AlA vfdaq PROC_HUMAN : 12- 16: gagql Af-AlA kgfta PROC_HUMAN : 184- 189: ayaft AldAlA dggvk PROC_METSM : 167- 171: mdlei AtiA-A scmpa PROC_MYCLE : 87- 91: gdlvq Aa-AvA ndsae PROC_MYCLE : 215- 219: aaqtm AgsA-A mller PROC_MYCLE : 278- 282: mvvda AvqA-A kirse PROC_PEA : 188- 193: ayiyl AieAlA dggva PROC_PEA : 261- 265: gtlmn AvvA-A akrsr PROC_PEA : 261- 266: gtlmn AvvAaA krsre PROC_PSEAE : 57- 61: vvesn Ae-AvA dadvv PROC_PSEAE : 59- 63: esnae Av-AdA dvvvl PROC_PSEAE : 81- 85: kavcq Al-ApA lkpeq PROC_PSEAE : 208- 212: ltlqt AlgA-A qmals PROC_PSEAE : 255- 259: alveq AlnA-A sqrsa PROC_SOYBN : 189- 194: ayvyl AieAlA dggva PROC_SOYBN : 262- 266: gtlmn AvvA-A akrsr PROC_SOYBN : 262- 267: gtlmn AvvAaA krsre PROC_TREPA : 101- 105: caaye AlfA-A dphqg PROC_TREPA : 161- 166: evvdt AyfAiA gviag PROC_TREPA : 170- 175: iagvi AgcApA faaqf PROC_TREPA : 173- 177: viagc Ap-AfA aqfie PROC_TREPA : 175- 178: agcap Af-A-A qfiea PROC_TREPA : 183- 187: aqfie Al-AdA gvryg PROC_YEAST : 24- 28: saiyn ApkA-A detaa PROH_BACSU : 117- 121: ssmig As-AtA ialgk PROH_BACSU : 119- 123: migas At-AiA lgkyv R 18: 11.5102 36( 12) A-x(0,1)-A-x(3,4)-A Occurences: 36(12) PROC_CORGL : 98- 104: vvvsm A-AgisiA amees PROC_CORGL : 104- 110: agisi A-AmeesA saglp PROC_CORGL : 199- 205: lglpr AtAkkl-A vasfe PROC_CORGL : 205- 212: takkl AvAsfegA atmmk PROC_CORGL : 256- 261: gafyr A-Aqac-A drsee PROC_ECOLI : 198- 204: ggmpr AqAykf-A aqavm PROC_ECOLI : 198- 205: ggmpr AqAykfaA qavmg PROC_ECOLI : 205- 212: aykfa AqAvmgsA kmvle PROC_ECOLI : 250- 255: ekgfr A-Avie-A mtkcm PROC_HAEIN : 240- 246: gttaa AlAvfd-A qhfnq PROC_HUMAN : 14- 21: gqlaf AlAkgftA agvla PROC_HUMAN : 21- 26: akgft A-Agvl-A ahkim PROC_HUMAN : 21- 27: akgft A-AgvlaA hkima PROC_HUMAN : 26- 32: aagvl A-AhkimA sspdm PROC_HUMAN : 207- 213: avrlg AqAllg-A akmll PROC_HUMAN : 207- 214: avrlg AqAllgaA kmllh PROC_METSM : 170- 176: eiati A-AscmpA fialg PROC_MYCLE : 89- 95: lvqaa AvAnds-A eqvlv PROC_MYCLE : 128- 134: rampn AaAlvg-A gvtvl PROC_MYCLE : 128- 134: rampn A-AalvgA gvtvl PROC_MYCLE : 129- 134: ampna A-Alvg-A gvtvl PROC_MYCLE : 210- 215: vatel A-Aqtm-A gsaam PROC_MYCLE : 245- 250: qvdvp A-Aqlr-A titsp PROC_MYCLE : 277- 282: rmvvd A-Avqa-A kirse PROC_PEA : 130- 135: mpntp A-Avgq-A asvms PROC_PEA : 130- 136: mpntp A-AvgqaA svmsl PROC_PEA : 144- 150: mslgg A-AteedA nlisq PROC_PEA : 191- 198: ylaie AlAdggvA aglpr PROC_PSEAE : 28- 33: aqgvp A-Aqir-A sdpga PROC_PSEAE : 57- 63: vvesn AeAvad-A dvvvl PROC_PSEAE : 96- 102: livsi A-AgipcA sleaw PROC_PSEAE : 134- 140: asgly AnAqvs-A aqceq PROC_PSEAE : 134- 141: asgly AnAqvsaA qceqa PROC_PSEAE : 140- 146: naqvs A-AqceqA gqlls PROC_PSEAE : 258- 264: eqaln A-AsqrsA elaeq PROC_SOYBN : 131- 136: mpntp A-Avgq-A asvms PROC_SOYBN : 131- 137: mpntp A-AvgqaA svmsl PROC_SOYBN : 192- 199: ylaie AlAdggvA aglpr PROC_TREPA : 164- 170: dtayf AiAgvi-A gcapa PROC_TREPA : 177- 183: capaf A-AqfieA ladag PROC_YEAST : 27- 32: ynapk A-Adet-A aafyp PROC_YEAST : 27- 33: ynapk A-AdetaA afyps PROH_BACSU : 117- 123: ssmig AsAtai-A lgkyv PROH_BACSU : 226- 231: pngtt A-Agle-A S 19: 11.5102 36( 12) A-x(2,3)-A-x(0,1)-A Occurences: 36(12) PROC_CORGL : 201- 207: lprat AkklAvA sfega PROC_CORGL : 252- 257: sgirg AfyrA-A qacad PROC_CORGL : 256- 261: gafyr Aaq-AcA drsee PROC_ECOLI : 185- 190: fmfie AmadA-A vlggm PROC_ECOLI : 200- 205: mpraq AykfA-A qavmg PROC_HAEIN : 167- 171: etqmh Avt-A-A sgssp PROC_HUMAN : 8- 14: vgfig AgqlAfA lakgf PROC_HUMAN : 22- 27: kgfta AgvlA-A hkima PROC_HUMAN : 184- 189: ayaft Ald-AlA dggvk PROC_HUMAN : 209- 214: rlgaq AllgA-A kmllh PROC_METSM : 167- 171: mdlei Ati-A-A scmpa PROC_MYCLE : 124- 129: tpvvr AmpnA-A alvga PROC_MYCLE : 124- 130: tpvvr AmpnAaA lvgag PROC_MYCLE : 206- 211: ltrqv AtelA-A qtmag PROC_MYCLE : 215- 219: aaqtm Ags-A-A mller PROC_MYCLE : 277- 282: rmvvd AavqA-A kirse PROC_MYCLE : 278- 282: mvvda Avq-A-A kirse PROC_PEA : 131- 136: pntpa AvgqA-A svmsl PROC_PEA : 188- 193: ayiyl Aie-AlA dggva PROC_PEA : 261- 265: gtlmn Avv-A-A akrsr PROC_PEA : 261- 266: gtlmn AvvaA-A krsre PROC_PEA : 261- 266: gtlmn Avv-AaA krsre PROC_PSEAE : 10- 15: iafig AgnmA-A sligg PROC_PSEAE : 57- 63: vvesn AeavAdA dvvvl PROC_PSEAE : 77- 83: pqamk AvcqAlA palkp PROC_PSEAE : 136- 141: glyan AqvsA-A qceqa PROC_PSEAE : 208- 212: ltlqt Alg-A-A qmals PROC_PSEAE : 255- 259: alveq Aln-A-A sqrsa PROC_SOYBN : 132- 137: pntpa AvgqA-A svmsl PROC_SOYBN : 189- 194: ayvyl Aie-AlA dggva PROC_SOYBN : 262- 266: gtlmn Avv-A-A akrsr PROC_SOYBN : 262- 267: gtlmn AvvaA-A krsre PROC_SOYBN : 262- 267: gtlmn Avv-AaA krsre PROC_TREPA : 101- 105: caaye Alf-A-A dphqg PROC_TREPA : 161- 166: evvdt Ayf-AiA gviag PROC_TREPA : 170- 175: iagvi Agc-ApA faaqf PROC_TREPA : 173- 178: viagc ApafA-A qfiea PROC_TREPA : 198- 203: lardq AyrlA-A hmleg PROC_YEAST : 24- 28: saiyn Apk-A-A detaa PROC_YEAST : 28- 33: napka AdetA-A afyps PROC_YEAST : 28- 34: napka AdetAaA fypsk PROH_BACSU : 117- 123: ssmig AsatAiA lgkyv T 20: 11.5102 24( 12) G-x(3,4)-A-x(2,3)-L Occurences: 24(12) PROC_CORGL : 137- 145: stvtk GryvdAeq-L eqvkd PROC_CORGL : 174- 182: vtams Gssp-AylfL vteal PROC_CORGL : 235- 244: vsspa GttvaAireL eesgi PROC_ECOLI : 234- 243: vcspg GttieAvrvL eekgf PROC_HAEIN : 12- 20: afigg GnmaqAii-L gllkq PROC_HAEIN : 58- 67: sennv GsaikAevvL lavkp PROC_HAEIN : 173- 181: vtaas Gssp-AyffL mleam PROC_HAEIN : 234- 241: nvtsk Ggtt-Aaa-L avfda PROC_HUMAN : 4- 11: msv Gfig-Agq-L afala PROC_HUMAN : 7- 15: svgfi GagqlAfa-L akgft PROC_HUMAN : 18- 25: falak Gfta-Agv-L aahki PROC_HUMAN : 177- 185: glsgs Gpay-AftaL dalad PROC_HUMAN : 236- 245: vsspg GatihAlhvL esggf PROC_METSM : 181- 189: afial GvdlfAge-L eekcn PROC_MYCLE : 179- 187: vtavs Gsgp-AyffL lveal PROC_MYCLE : 256- 263: titsp Ggtt-Aaa-L reler PROC_MYCLE : 257- 266: itspg GttaaAlreL erggl PROC_PEA : 179- 187: itgls Gsgp-AyiyL aieal PROC_PSEAE : 9- 17: riafi GagnmAas-L igglr PROC_PSEAE : 173- 181: vtavs Gsgp-AyffL lmqam PROC_SOYBN : 180- 188: itgls Gsgp-AyvyL aieal PROC_TREPA : 93- 102: aisca GmscaAyeaL faadp PROC_YEAST : 188- 195: atalv Gsgp-Afv-L lmles PROC_YEAST : 188- 196: atalv Gsgp-AfvlL mlesl PROH_BACSU : 116- 124: tssmi GasatAia-L gkyvs Number of patterns evaluated by Pratt:1736 Total running time: 2 seconds