------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file OMPTIN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename OMPTIN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: COLY_YERPE 312 OMPP_ECOLI 315 OMPT_ECOLI 317 PGTE_SALTY 296 Pratt run started at Thu Feb 6 20:26:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 112.0914 4( 4) D-x(0,1)-S-x-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G 2: 111.5914 4( 4) P-x(5)-I-G-Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 3: 111.5914 4( 4) D-x(1,2)-S-x(0,1)-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G 4: 111.5914 4( 4) D-x(0,1)-S-x(0,1)-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G 5: 108.4213 4( 4) D-x-S-x-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G 6: 107.9213 4( 4) T-x(1,2)-S-x-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G 7: 107.4213 4( 4) I-G-Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 8: 107.4213 4( 4) T-x(2,3)-S-x(0,1)-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G 9: 107.4213 4( 4) T-x(1,2)-S-x(0,1)-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G 10: 104.2513 4( 4) T-x(2)-S-x-H-P-x-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A 11: 103.7513 4( 4) S-x(4)-T-x(1,2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G-x-Y 12: 103.2513 4( 4) G-Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 13: 103.2513 4( 4) G-x(2)-P-x(5)-I-G-Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D 14: 100.0812 4( 4) N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G-x-Y-x-Y 15: 100.0812 4( 4) S-x(4)-T-x(2)-N-x-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G 16: 99.5812 4( 4) N-x(0,1)-A-N-E-x-D-L-N-x-K-G-W-x-L-x(4)-Y-x(5)-A-G-Y-Q-E-x-R-x-S-x(2)-A-x-G-G-x-Y-x-Y 17: 99.0812 4( 4) Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 18: 94.9112 4( 4) Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 19: 90.7411 4( 4) F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(1,2)-D-x(0,1)-F-E-x(4)-F-K-x-S-x-W-V-x(3)-D-N-D-E-H-Y 20: 90.7411 4( 4) G-x(3,5)-G-x(2)-P-x(5)-I-G-Y-x-Q-x-F-x(2)-P-Y-x-G-L-x-G-x-Y-R-x(3)-F-E-x(4)-F-K-x-S-x-W-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 166.8297 4( 4) D-x(0,1)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G B 2: 166.3297 4( 4) D-x(1,2)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G C 3: 166.3297 4( 4) D-x(0,1)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G D 4: 163.1597 4( 4) D-x-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G E 5: 162.6597 4( 4) T-x(1,2)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G F 6: 162.1597 4( 4) T-x(2,3)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G G 7: 162.1597 4( 4) T-x(1,2)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G H 8: 158.9896 4( 4) T-x(2)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A I 9: 154.1003 4( 4) N-x-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y-x-Y-[DNS]-[ENS]-[EGN] J 10: 153.6003 4( 4) N-x(0,1)-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y-x-Y-[DNS]-[ENS]-[EGN] K 11: 153.0257 4( 4) S-x(4)-T-x(1,2)-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y L 12: 150.0405 4( 4) P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y M 13: 147.6188 4( 4) G-[ANS]-[FL]-P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D N 14: 146.1802 4( 4) S-x(4)-T-x(2)-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G O 15: 140.0233 4( 4) I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y P 16: 135.8533 4( 4) G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Q 17: 131.6832 4( 4) Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y R 18: 129.7695 4( 4) G-x(3,5)-G-x(2)-P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x-[DEN]-[DN]-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V S 19: 127.5132 4( 4) Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y T 20: 120.1662 4( 4) F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Best patterns with alignements: fitness hits(seqs) Pattern A 1: 166.8297 4( 4) D-x(0,1)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G Occurences: 4(4) COLY_YERPE : 117- 166: qsewt DhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGG sysyn OMPP_ECOLI : 117- 166: pgtwt DeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGG tyiys OMPT_ECOLI : 117- 166: pgtwt DeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGG syiys PGTE_SALTY : 134- 183: qpgwt DrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGG syiyd B 2: 166.3297 4( 4) D-x(1,2)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G Occurences: 4(4) COLY_YERPE : 117- 166: qsewt DhsS-HPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGG sysyn COLY_YERPE : 117- 166: qsewt Dh-SsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGG sysyn OMPP_ECOLI : 117- 166: pgtwt De-SrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGG tyiys OMPT_ECOLI : 117- 166: pgtwt De-SrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGG syiys PGTE_SALTY : 134- 183: qpgwt Dr-SiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGG syiyd C 3: 166.3297 4( 4) D-x(0,1)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G Occurences: 4(4) COLY_YERPE : 117- 166: qsewt DhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGG sysyn OMPP_ECOLI : 117- 166: pgtwt DeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGG tyiys OMPT_ECOLI : 117- 166: pgtwt DeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGG syiys PGTE_SALTY : 134- 183: qpgwt DrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGG syiyd D 4: 163.1597 4( 4) D-x-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G Occurences: 4(4) COLY_YERPE : 117- 165: qsewt DhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtG gsysy OMPP_ECOLI : 117- 165: pgtwt DeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtG gtyiy OMPT_ECOLI : 117- 165: pgtwt DeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArG gsyiy PGTE_SALTY : 134- 182: qpgwt DrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArG gsyiy E 5: 162.6597 4( 4) T-x(1,2)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G Occurences: 4(4) COLY_YERPE : 116- 165: nqsew TdhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtG gsysy OMPP_ECOLI : 116- 165: tpgtw TdeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtG gtyiy OMPT_ECOLI : 116- 165: npgtw TdeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArG gsyiy PGTE_SALTY : 133- 182: eqpgw TdrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArG gsyiy F 6: 162.1597 4( 4) T-x(2,3)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G Occurences: 4(4) COLY_YERPE : 116- 165: nqsew TdhsS-HPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtG gsysy COLY_YERPE : 116- 165: nqsew Tdh-SsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtG gsysy OMPP_ECOLI : 116- 165: tpgtw Tde-SrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtG gtyiy OMPT_ECOLI : 116- 165: npgtw Tde-SrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArG gsyiy PGTE_SALTY : 133- 182: eqpgw Tdr-SiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArG gsyiy G 7: 162.1597 4( 4) T-x(1,2)-S-x(0,1)-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G Occurences: 4(4) COLY_YERPE : 116- 165: nqsew TdhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtG gsysy OMPP_ECOLI : 116- 165: tpgtw TdeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtG gtyiy OMPT_ECOLI : 116- 165: npgtw TdeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArG gsyiy PGTE_SALTY : 133- 182: eqpgw TdrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArG gsyiy H 8: 158.9896 4( 4) T-x(2)-S-x-H-P-[AD]-T-[NQRS]-[LV]-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A Occurences: 4(4) COLY_YERPE : 116- 163: nqsew TdhSsHPATNVNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTA tggsy OMPP_ECOLI : 116- 163: tpgtw TdeSrHPDTRLNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNA tggty OMPT_ECOLI : 116- 163: npgtw TdeSrHPDTQLNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTA rggsy PGTE_SALTY : 133- 180: eqpgw TdrSiHPDTSVNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTA rggsy I 9: 154.1003 4( 4) N-x-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y-x-Y-[DNS]-[ENS]-[EGN] Occurences: 4(4) COLY_YERPE : 127- 173: patnv NhANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGGSYsYNNG aytgn OMPP_ECOLI : 127- 173: pdtrl NyANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGGTYiYSEN ggfrn OMPT_ECOLI : 127- 173: pdtql NyANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGGSYiYSSE egfrd PGTE_SALTY : 144- 190: pdtsv NyANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGGSYiYDNG ryign J 10: 153.6003 4( 4) N-x(0,1)-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y-x-Y-[DNS]-[ENS]-[EGN] Occurences: 4(4) COLY_YERPE : 127- 173: patnv NhANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGGSYsYNNG aytgn OMPP_ECOLI : 127- 173: pdtrl NyANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGGTYiYSEN ggfrn OMPT_ECOLI : 127- 173: pdtql NyANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGGSYiYSSE egfrd PGTE_SALTY : 144- 190: pdtsv NyANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGGSYiYDNG ryign K 11: 153.0257 4( 4) S-x(4)-T-x(1,2)-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G-[ST]-Y Occurences: 4(4) COLY_YERPE : 119- 168: ewtdh SshpaTnvNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGGSY synng OMPP_ECOLI : 119- 168: twtde SrhpdTrlNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGGTY iysen OMPT_ECOLI : 119- 168: twtde SrhpdTqlNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGGSY iysse PGTE_SALTY : 136- 185: gwtdr SihpdTsvNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGGSY iydng L 12: 150.0405 4( 4) P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 180- 229: ytgnf PkgvRVIGYnQRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 184- 233: etgal PdkiKVIGYkQHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 184- 233: digsf PngeRAIGYkQRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 197- 246: yignf PhgvRGIGYsQRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt M 13: 147.6188 4( 4) G-[ANS]-[FL]-P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D Occurences: 4(4) COLY_YERPE : 177- 226: ngayt GNFPkgvRVIGYnQRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDND ehymr OMPP_ECOLI : 181- 230: frnet GALPdkiKVIGYkQHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDND ehyvr OMPT_ECOLI : 181- 230: frddi GSFPngeRAIGYkQRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDND ehydp PGTE_SALTY : 194- 243: ngryi GNFPhgvRGIGYsQRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDND ehymr N 14: 146.1802 4( 4) S-x(4)-T-x(2)-N-[HY]-A-N-E-[FY]-D-L-N-[IV]-K-G-W-[FL]-L-x-[DEG]-[DEPS]-[DN]-Y-[KR]-[AL]-[AG]-[ILV]-x-A-G-Y-Q-E-[ST]-R-[FY]-S-[FW]-[NT]-A-x-G-G Occurences: 4(4) COLY_YERPE : 119- 166: ewtdh SshpaTnvNHANEYDLNVKGWLLqDENYKAGItAGYQETRFSWTAtGG sysyn OMPP_ECOLI : 119- 166: twtde SrhpdTrlNYANEFDLNVKGWFLkESDYRLAImAGYQESRYSFNAtGG tyiys OMPT_ECOLI : 119- 166: twtde SrhpdTqlNYANEFDLNIKGWLLnEPNYRLGLmAGYQESRYSFTArGG syiys PGTE_SALTY : 136- 183: gwtdr SihpdTsvNYANEYDLNVKGWLLqGDNYKAGVtAGYQETRFSWTArGG syiyd O 15: 140.0233 4( 4) I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 186- 229: kgvrv IGYnQRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 190- 233: dkikv IGYkQHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 190- 233: ngera IGYkQRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 203- 246: hgvrg IGYsQRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt P 16: 135.8533 4( 4) G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 187- 229: gvrvi GYnQRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 191- 233: kikvi GYkQHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 191- 233: gerai GYkQRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 204- 246: gvrgi GYsQRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt Q 17: 131.6832 4( 4) Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 188- 229: vrvig YnQRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 192- 233: ikvig YkQHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 192- 233: eraig YkQRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 205- 246: vrgig YsQRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt R 18: 129.7695 4( 4) G-x(3,5)-G-x(2)-P-x(3)-[KR]-[AGV]-I-G-Y-x-Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x-[DEN]-[DN]-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V Occurences: 4(4) COLY_YERPE : 173- 220: ysynn Gayt--GnfPkgvRVIGYnQRFsMPYIGLAGQYRiNDFElNAlFKFSDWV rahdn OMPP_ECOLI : 175- 224: yseng GfrnetGalPdkiKVIGYkQHFkIPYVGLTGNYRyDNFEfGGaFKYSGWV rgsdn OMPT_ECOLI : 175- 224: yssee GfrddiGsfPngeRAIGYkQRFkMPYIGLTGSYRyEDFElGGtFKYSGWV essdn PGTE_SALTY : 190- 237: yiydn Gryi--GnfPhgvRGIGYsQRFeMPYIGLAGDYRiNDFEcNVlFKYSDWV nahdn S 19: 127.5132 4( 4) Q-[HR]-F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 190- 229: vigyn QRFsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 194- 233: vigyk QHFkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 194- 233: aigyk QRFkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 207- 246: gigys QRFeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt T 20: 120.1662 4( 4) F-x-[IM]-P-Y-[IV]-G-L-[AT]-G-[DNQS]-Y-R-x(1,2)-D-x(0,1)-F-E-x-[GN]-[AGV]-x-F-K-[FY]-S-[DG]-W-V-[ENR]-[AGS]-x-D-N-D-E-H-Y Occurences: 4(4) COLY_YERPE : 192- 229: gynqr FsMPYIGLAGQYRinD-FElNAlFKFSDWVRAhDNDEHY mrdlt OMPP_ECOLI : 196- 233: gykqh FkIPYVGLTGNYRy-DnFEfGGaFKYSGWVRGsDNDEHY vrqtt OMPT_ECOLI : 196- 233: gykqr FkMPYIGLTGSYRyeD-FElGGtFKYSGWVESsDNDEHY dpgkr PGTE_SALTY : 209- 246: gysqr FeMPYIGLAGDYRinD-FEcNVlFKYSDWVNAhDNDEHY mrklt Number of patterns evaluated by Pratt:21443 Total running time: 4 seconds