------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 32 sequences from file OMPDECASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 32 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename OMPDECASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DCOP_ASPNG 277 DCOP_BACCL 244 DCOP_BACSU 239 DCOP_CANAL 270 DCOP_CANBO 270 DCOP_CANGA 265 DCOP_CANMA 266 DCOP_CEPAC 376 DCOP_ECOLI 245 DCOP_EMENI 274 DCOP_HAEIN 230 DCOP_HANPO 263 DCOP_KLULA 267 DCOP_KLUMA 267 DCOP_MYCBO 274 DCOP_MYXXA 288 DCOP_NEUCR 397 DCOP_PENCH 278 DCOP_PHYBL 267 DCOP_RHINI 265 DCOP_RHIRA 265 DCOP_SALTY 245 DCOP_SCHCO 278 DCOP_SCHPO 264 DCOP_TRIRE 381 DCOP_USTMA 298 DCOP_YEAST 267 PYR5_BOVIN 480 PYR5_DICDI 478 PYR5_DROME 493 PYR5_HUMAN 480 PYR5_MOUSE 266 Pratt run started at Thu Feb 6 20:26:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 32( 32) D-x-K-x(2)-D-I-x(2)-T 2: 16.6802 32( 32) K-x(2)-D-I-x(2)-T 3: 12.5102 32( 32) D-I-x(2)-T 4: 12.0102 39( 32) D-x(4,5)-I-x(2)-T 5: 11.5102 33( 32) D-x-K-x(1,3)-I 6: 11.0102 61( 32) G-x(0,1)-D-x(0,2)-G 7: 11.0102 42( 32) D-x(0,1)-G-x(0,2)-V 8: 11.0102 66( 32) G-x(2,3)-V-x(0,2)-L 9: 10.5102 39( 32) I-x(0,2)-G-x(1,3)-T 10: 10.5102 109( 32) G-x(2,4)-L-x(2,4)-G 11: 10.5102 66( 32) R-x(0,2)-L-x(0,2)-A 12: 10.5102 80( 32) L-x(2,4)-G-x(2,4)-A 13: 10.5102 64( 32) L-x(1,3)-G-x(2,4)-A 14: 10.5102 51( 32) R-x(2,4)-A-x(0,2)-D 15: 8.3401 88( 32) A-E 16: 8.3401 95( 32) A-x(2)-L 17: 8.3401 72( 32) G-R 18: 8.3401 103( 32) V-x-G 19: 8.3401 90( 32) R-x(5)-A 20: 8.3401 71( 32) F-x-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 24.0745 32( 32) D-x-K-x(2)-D-I-[GP]-x-T B 2: 19.9044 32( 32) K-x(2)-D-I-[GP]-x-T C 3: 18.9044 32( 32) D-x-K-x(1,3)-I-[GP]-x-T D 4: 15.7344 32( 32) D-I-[GP]-x-T E 5: 15.2344 32( 32) D-x(4,5)-I-[GP]-x-T F 6: 12.5102 32( 32) D-I-x(2)-T G 7: 12.0102 39( 32) D-x(4,5)-I-x(2)-T H 8: 11.6267 34( 32) F-x-D-[IL] I 9: 11.0102 61( 32) G-x(0,1)-D-x(0,2)-G J 10: 11.0102 42( 32) D-x(0,1)-G-x(0,2)-V K 11: 11.0102 66( 32) G-x(2,3)-V-x(0,2)-L L 12: 11.0061 48( 32) V-x-G-x(3)-[GQT] M 13: 10.5102 39( 32) I-x(0,2)-G-x(1,3)-T N 14: 10.5102 109( 32) G-x(2,4)-L-x(2,4)-G O 15: 10.5102 66( 32) R-x(0,2)-L-x(0,2)-A P 16: 10.5102 80( 32) L-x(2,4)-G-x(2,4)-A Q 17: 10.5102 64( 32) L-x(1,3)-G-x(2,4)-A R 18: 10.5102 51( 32) R-x(2,4)-A-x(0,2)-D S 19: 10.2558 56( 32) G-R-x-[AILPV] T 20: 10.2458 48( 32) R-x(5)-A-x(2)-[EGQST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 24.0745 32( 32) D-x-K-x(2)-D-I-[GP]-x-T Occurences: 32(32) DCOP_ASPNG : 93- 102: flife DrKfiDIGnT vqkqy DCOP_BACCL : 59- 68: havfl DlKlhDIPnT vkqam DCOP_BACSU : 60- 69: celfl DlKlhDIPtT vnkam DCOP_CANAL : 93- 102: fmife DrKfaDIGnT vkkqy DCOP_CANBO : 95- 104: fmife DrKfaDIGnT vksqy DCOP_CANGA : 91- 100: flife DrKfaDIGnT vklqy DCOP_CANMA : 92- 101: fmife DrKfaDIGnT vkhqy DCOP_CEPAC : 99- 108: flife DrKfgDIGnT velqy DCOP_ECOLI : 71- 80: fdifl DlKfhDIPnT aahav DCOP_EMENI : 93- 102: flife DrKfiDIGnT vqkqy DCOP_HAEIN : 59- 68: fdvfl DlKyhDIPnT varav DCOP_HANPO : 90- 99: fmife DrKfaDIGnT vklqy DCOP_KLULA : 91- 100: flife DrKfaDIGnT vklqy DCOP_KLUMA : 91- 100: flife DrKfaDIGnT vklqy DCOP_MYCBO : 93- 102: vlvla DaKrgDIGaT msaya DCOP_MYXXA : 97- 106: tltll DvKrgDIGsT meaya DCOP_NEUCR : 105- 114: flife DrKfvDIGsT vqkqy DCOP_PENCH : 96- 105: flife DrKfiDIGnT vqkqy DCOP_PHYBL : 93- 102: flife DrKfaDIGnT vkhqy DCOP_RHINI : 91- 100: flffe DrKfaDIGnT vkhqy DCOP_RHIRA : 91- 100: flife DrKfaDIGnT vkhqy DCOP_SALTY : 71- 80: fdvfl DlKfhDIPnT tarav DCOP_SCHCO : 93- 102: flife DrKfaDIGnT valqy DCOP_SCHPO : 93- 102: flife DrKfaDIGnT vklqy DCOP_TRIRE : 99- 108: flife DrKfgDIGhT velqy DCOP_USTMA : 93- 102: flife DrKfaDIGnT vslqy DCOP_YEAST : 91- 100: fllfe DrKfaDIGnT vklqy PYR5_BOVIN : 312- 321: flife DrKfaDIGnT vkkqy PYR5_DICDI : 311- 320: flife DrKfaDIGnT vkyqf PYR5_DROME : 318- 327: fllme DrKfaDIGnT vslqy PYR5_HUMAN : 312- 321: flife DrKfaDIGnT vkkqy PYR5_MOUSE : 97- 106: flife DrKfaDIGnT vkkqy B 2: 19.9044 32( 32) K-x(2)-D-I-[GP]-x-T Occurences: 32(32) DCOP_ASPNG : 95- 102: ifedr KfiDIGnT vqkqy DCOP_BACCL : 61- 68: vfldl KlhDIPnT vkqam DCOP_BACSU : 62- 69: lfldl KlhDIPtT vnkam DCOP_CANAL : 95- 102: ifedr KfaDIGnT vkkqy DCOP_CANBO : 97- 104: ifedr KfaDIGnT vksqy DCOP_CANGA : 93- 100: ifedr KfaDIGnT vklqy DCOP_CANMA : 94- 101: ifedr KfaDIGnT vkhqy DCOP_CEPAC : 101- 108: ifedr KfgDIGnT velqy DCOP_ECOLI : 73- 80: ifldl KfhDIPnT aahav DCOP_EMENI : 95- 102: ifedr KfiDIGnT vqkqy DCOP_HAEIN : 61- 68: vfldl KyhDIPnT varav DCOP_HANPO : 92- 99: ifedr KfaDIGnT vklqy DCOP_KLULA : 93- 100: ifedr KfaDIGnT vklqy DCOP_KLUMA : 93- 100: ifedr KfaDIGnT vklqy DCOP_MYCBO : 95- 102: vlada KrgDIGaT msaya DCOP_MYXXA : 99- 106: tlldv KrgDIGsT meaya DCOP_NEUCR : 107- 114: ifedr KfvDIGsT vqkqy DCOP_PENCH : 98- 105: ifedr KfiDIGnT vqkqy DCOP_PHYBL : 95- 102: ifedr KfaDIGnT vkhqy DCOP_RHINI : 93- 100: ffedr KfaDIGnT vkhqy DCOP_RHIRA : 93- 100: ifedr KfaDIGnT vkhqy DCOP_SALTY : 73- 80: vfldl KfhDIPnT tarav DCOP_SCHCO : 95- 102: ifedr KfaDIGnT valqy DCOP_SCHPO : 95- 102: ifedr KfaDIGnT vklqy DCOP_TRIRE : 101- 108: ifedr KfgDIGhT velqy DCOP_USTMA : 95- 102: ifedr KfaDIGnT vslqy DCOP_YEAST : 93- 100: lfedr KfaDIGnT vklqy PYR5_BOVIN : 314- 321: ifedr KfaDIGnT vkkqy PYR5_DICDI : 313- 320: ifedr KfaDIGnT vkyqf PYR5_DROME : 320- 327: lmedr KfaDIGnT vslqy PYR5_HUMAN : 314- 321: ifedr KfaDIGnT vkkqy PYR5_MOUSE : 99- 106: ifedr KfaDIGnT vkkqy C 3: 18.9044 32( 32) D-x-K-x(1,3)-I-[GP]-x-T Occurences: 32(32) DCOP_ASPNG : 93- 102: flife DrKfidIGnT vqkqy DCOP_BACCL : 59- 68: havfl DlKlhdIPnT vkqam DCOP_BACSU : 60- 69: celfl DlKlhdIPtT vnkam DCOP_CANAL : 93- 102: fmife DrKfadIGnT vkkqy DCOP_CANBO : 95- 104: fmife DrKfadIGnT vksqy DCOP_CANGA : 91- 100: flife DrKfadIGnT vklqy DCOP_CANMA : 92- 101: fmife DrKfadIGnT vkhqy DCOP_CEPAC : 99- 108: flife DrKfgdIGnT velqy DCOP_ECOLI : 71- 80: fdifl DlKfhdIPnT aahav DCOP_EMENI : 93- 102: flife DrKfidIGnT vqkqy DCOP_HAEIN : 59- 68: fdvfl DlKyhdIPnT varav DCOP_HANPO : 90- 99: fmife DrKfadIGnT vklqy DCOP_KLULA : 91- 100: flife DrKfadIGnT vklqy DCOP_KLUMA : 91- 100: flife DrKfadIGnT vklqy DCOP_MYCBO : 93- 102: vlvla DaKrgdIGaT msaya DCOP_MYXXA : 97- 106: tltll DvKrgdIGsT meaya DCOP_NEUCR : 105- 114: flife DrKfvdIGsT vqkqy DCOP_PENCH : 96- 105: flife DrKfidIGnT vqkqy DCOP_PHYBL : 93- 102: flife DrKfadIGnT vkhqy DCOP_RHINI : 91- 100: flffe DrKfadIGnT vkhqy DCOP_RHIRA : 91- 100: flife DrKfadIGnT vkhqy DCOP_SALTY : 71- 80: fdvfl DlKfhdIPnT tarav DCOP_SCHCO : 93- 102: flife DrKfadIGnT valqy DCOP_SCHPO : 93- 102: flife DrKfadIGnT vklqy DCOP_TRIRE : 99- 108: flife DrKfgdIGhT velqy DCOP_USTMA : 93- 102: flife DrKfadIGnT vslqy DCOP_YEAST : 91- 100: fllfe DrKfadIGnT vklqy PYR5_BOVIN : 312- 321: flife DrKfadIGnT vkkqy PYR5_DICDI : 311- 320: flife DrKfadIGnT vkyqf PYR5_DROME : 318- 327: fllme DrKfadIGnT vslqy PYR5_HUMAN : 312- 321: flife DrKfadIGnT vkkqy PYR5_MOUSE : 97- 106: flife DrKfadIGnT vkkqy D 4: 15.7344 32( 32) D-I-[GP]-x-T Occurences: 32(32) DCOP_ASPNG : 98- 102: drkfi DIGnT vqkqy DCOP_BACCL : 64- 68: dlklh DIPnT vkqam DCOP_BACSU : 65- 69: dlklh DIPtT vnkam DCOP_CANAL : 98- 102: drkfa DIGnT vkkqy DCOP_CANBO : 100- 104: drkfa DIGnT vksqy DCOP_CANGA : 96- 100: drkfa DIGnT vklqy DCOP_CANMA : 97- 101: drkfa DIGnT vkhqy DCOP_CEPAC : 104- 108: drkfg DIGnT velqy DCOP_ECOLI : 76- 80: dlkfh DIPnT aahav DCOP_EMENI : 98- 102: drkfi DIGnT vqkqy DCOP_HAEIN : 64- 68: dlkyh DIPnT varav DCOP_HANPO : 95- 99: drkfa DIGnT vklqy DCOP_KLULA : 96- 100: drkfa DIGnT vklqy DCOP_KLUMA : 96- 100: drkfa DIGnT vklqy DCOP_MYCBO : 98- 102: dakrg DIGaT msaya DCOP_MYXXA : 102- 106: dvkrg DIGsT meaya DCOP_NEUCR : 110- 114: drkfv DIGsT vqkqy DCOP_PENCH : 101- 105: drkfi DIGnT vqkqy DCOP_PHYBL : 98- 102: drkfa DIGnT vkhqy DCOP_RHINI : 96- 100: drkfa DIGnT vkhqy DCOP_RHIRA : 96- 100: drkfa DIGnT vkhqy DCOP_SALTY : 76- 80: dlkfh DIPnT tarav DCOP_SCHCO : 98- 102: drkfa DIGnT valqy DCOP_SCHPO : 98- 102: drkfa DIGnT vklqy DCOP_TRIRE : 104- 108: drkfg DIGhT velqy DCOP_USTMA : 98- 102: drkfa DIGnT vslqy DCOP_YEAST : 96- 100: drkfa DIGnT vklqy PYR5_BOVIN : 317- 321: drkfa DIGnT vkkqy PYR5_DICDI : 316- 320: drkfa DIGnT vkyqf PYR5_DROME : 323- 327: drkfa DIGnT vslqy PYR5_HUMAN : 317- 321: drkfa DIGnT vkkqy PYR5_MOUSE : 102- 106: drkfa DIGnT vkkqy E 5: 15.2344 32( 32) D-x(4,5)-I-[GP]-x-T Occurences: 32(32) DCOP_ASPNG : 93- 102: flife DrkfidIGnT vqkqy DCOP_BACCL : 59- 68: havfl DlklhdIPnT vkqam DCOP_BACSU : 60- 69: celfl DlklhdIPtT vnkam DCOP_CANAL : 93- 102: fmife DrkfadIGnT vkkqy DCOP_CANBO : 95- 104: fmife DrkfadIGnT vksqy DCOP_CANGA : 91- 100: flife DrkfadIGnT vklqy DCOP_CANMA : 92- 101: fmife DrkfadIGnT vkhqy DCOP_CEPAC : 99- 108: flife DrkfgdIGnT velqy DCOP_ECOLI : 71- 80: fdifl DlkfhdIPnT aahav DCOP_EMENI : 93- 102: flife DrkfidIGnT vqkqy DCOP_HAEIN : 59- 68: fdvfl DlkyhdIPnT varav DCOP_HANPO : 90- 99: fmife DrkfadIGnT vklqy DCOP_KLULA : 91- 100: flife DrkfadIGnT vklqy DCOP_KLUMA : 91- 100: flife DrkfadIGnT vklqy DCOP_MYCBO : 93- 102: vlvla DakrgdIGaT msaya DCOP_MYXXA : 97- 106: tltll DvkrgdIGsT meaya DCOP_NEUCR : 105- 114: flife DrkfvdIGsT vqkqy DCOP_PENCH : 96- 105: flife DrkfidIGnT vqkqy DCOP_PHYBL : 93- 102: flife DrkfadIGnT vkhqy DCOP_RHINI : 91- 100: flffe DrkfadIGnT vkhqy DCOP_RHIRA : 91- 100: flife DrkfadIGnT vkhqy DCOP_SALTY : 71- 80: fdvfl DlkfhdIPnT tarav DCOP_SCHCO : 93- 102: flife DrkfadIGnT valqy DCOP_SCHPO : 93- 102: flife DrkfadIGnT vklqy DCOP_TRIRE : 99- 108: flife DrkfgdIGhT velqy DCOP_USTMA : 93- 102: flife DrkfadIGnT vslqy DCOP_YEAST : 91- 100: fllfe DrkfadIGnT vklqy PYR5_BOVIN : 312- 321: flife DrkfadIGnT vkkqy PYR5_DICDI : 311- 320: flife DrkfadIGnT vkyqf PYR5_DROME : 318- 327: fllme DrkfadIGnT vslqy PYR5_HUMAN : 312- 321: flife DrkfadIGnT vkkqy PYR5_MOUSE : 97- 106: flife DrkfadIGnT vkkqy F 6: 12.5102 32( 32) D-I-x(2)-T Occurences: 32(32) DCOP_ASPNG : 98- 102: drkfi DIgnT vqkqy DCOP_BACCL : 64- 68: dlklh DIpnT vkqam DCOP_BACSU : 65- 69: dlklh DIptT vnkam DCOP_CANAL : 98- 102: drkfa DIgnT vkkqy DCOP_CANBO : 100- 104: drkfa DIgnT vksqy DCOP_CANGA : 96- 100: drkfa DIgnT vklqy DCOP_CANMA : 97- 101: drkfa DIgnT vkhqy DCOP_CEPAC : 104- 108: drkfg DIgnT velqy DCOP_ECOLI : 76- 80: dlkfh DIpnT aahav DCOP_EMENI : 98- 102: drkfi DIgnT vqkqy DCOP_HAEIN : 64- 68: dlkyh DIpnT varav DCOP_HANPO : 95- 99: drkfa DIgnT vklqy DCOP_KLULA : 96- 100: drkfa DIgnT vklqy DCOP_KLUMA : 96- 100: drkfa DIgnT vklqy DCOP_MYCBO : 98- 102: dakrg DIgaT msaya DCOP_MYXXA : 102- 106: dvkrg DIgsT meaya DCOP_NEUCR : 110- 114: drkfv DIgsT vqkqy DCOP_PENCH : 101- 105: drkfi DIgnT vqkqy DCOP_PHYBL : 98- 102: drkfa DIgnT vkhqy DCOP_RHINI : 96- 100: drkfa DIgnT vkhqy DCOP_RHIRA : 96- 100: drkfa DIgnT vkhqy DCOP_SALTY : 76- 80: dlkfh DIpnT tarav DCOP_SCHCO : 98- 102: drkfa DIgnT valqy DCOP_SCHPO : 98- 102: drkfa DIgnT vklqy DCOP_TRIRE : 104- 108: drkfg DIghT velqy DCOP_USTMA : 98- 102: drkfa DIgnT vslqy DCOP_YEAST : 96- 100: drkfa DIgnT vklqy PYR5_BOVIN : 317- 321: drkfa DIgnT vkkqy PYR5_DICDI : 316- 320: drkfa DIgnT vkyqf PYR5_DROME : 323- 327: drkfa DIgnT vslqy PYR5_HUMAN : 317- 321: drkfa DIgnT vkkqy PYR5_MOUSE : 102- 106: drkfa DIgnT vkkqy G 7: 12.0102 39( 32) D-x(4,5)-I-x(2)-T Occurences: 39(32) DCOP_ASPNG : 93- 102: flife DrkfidIgnT vqkqy DCOP_BACCL : 59- 68: havfl DlklhdIpnT vkqam DCOP_BACSU : 60- 69: celfl DlklhdIptT vnkam DCOP_CANAL : 93- 102: fmife DrkfadIgnT vkkqy DCOP_CANBO : 95- 104: fmife DrkfadIgnT vksqy DCOP_CANBO : 196- 205: qmggs DegfdwIimT pgvgl DCOP_CANGA : 91- 100: flife DrkfadIgnT vklqy DCOP_CANMA : 92- 101: fmife DrkfadIgnT vkhqy DCOP_CANMA : 193- 202: dmggh DegfdwIvmT pgvgl DCOP_CEPAC : 99- 108: flife DrkfgdIgnT velqy DCOP_ECOLI : 71- 80: fdifl DlkfhdIpnT aahav DCOP_ECOLI : 120- 128: vpfgk Dapll-IavT vltsm DCOP_EMENI : 93- 102: flife DrkfidIgnT vqkqy DCOP_HAEIN : 59- 68: fdvfl DlkyhdIpnT varav DCOP_HAEIN : 108- 116: epygk Dapll-IavT vltsm DCOP_HANPO : 90- 99: fmife DrkfadIgnT vklqy DCOP_KLULA : 91- 100: flife DrkfadIgnT vklqy DCOP_KLUMA : 91- 100: flife DrkfadIgnT vklqy DCOP_MYCBO : 93- 102: vlvla DakrgdIgaT msaya DCOP_MYXXA : 97- 106: tltll DvkrgdIgsT meaya DCOP_NEUCR : 105- 114: flife DrkfvdIgsT vqkqy DCOP_NEUCR : 351- 359: qyntp Dnlvn-IkgT diaiv DCOP_PENCH : 96- 105: flife DrkfidIgnT vqkqy DCOP_PHYBL : 93- 102: flife DrkfadIgnT vkhqy DCOP_RHINI : 91- 100: flffe DrkfadIgnT vkhqy DCOP_RHIRA : 91- 100: flife DrkfadIgnT vkhqy DCOP_SALTY : 71- 80: fdvfl DlkfhdIpnT tarav DCOP_SALTY : 120- 128: apfsk Dapll-IavT vltsm DCOP_SCHCO : 93- 102: flife DrkfadIgnT valqy DCOP_SCHPO : 93- 102: flife DrkfadIgnT vklqy DCOP_TRIRE : 99- 108: flife DrkfgdIghT velqy DCOP_USTMA : 93- 102: flife DrkfadIgnT vslqy DCOP_YEAST : 91- 100: fllfe DrkfadIgnT vklqy PYR5_BOVIN : 312- 321: flife DrkfadIgnT vkkqy PYR5_DICDI : 311- 320: flife DrkfadIgnT vkyqf PYR5_DROME : 139- 148: ldtvr DlqgegIvvT davvv PYR5_DROME : 318- 327: fllme DrkfadIgnT vslqy PYR5_HUMAN : 312- 321: flife DrkfadIgnT vkkqy PYR5_MOUSE : 97- 106: flife DrkfadIgnT vkkqy H 8: 11.6267 34( 32) F-x-D-[IL] Occurences: 34(32) DCOP_ASPNG : 96- 99: fedrk FiDI gntvq DCOP_BACCL : 57- 60: qghav FlDL klhdi DCOP_BACSU : 58- 61: rncel FlDL klhdi DCOP_CANAL : 96- 99: fedrk FaDI gntvk DCOP_CANBO : 98- 101: fedrk FaDI gntvk DCOP_CANGA : 94- 97: fedrk FaDI gntvk DCOP_CANMA : 95- 98: fedrk FaDI gntvk DCOP_CEPAC : 102- 105: fedrk FgDI gntve DCOP_ECOLI : 69- 72: rgfdi FlDL kfhdi DCOP_ECOLI : 74- 77: fldlk FhDI pntaa DCOP_EMENI : 96- 99: fedrk FiDI gntvq DCOP_HAEIN : 57- 60: rnfdv FlDL kyhdi DCOP_HANPO : 93- 96: fedrk FaDI gntvk DCOP_KLULA : 94- 97: fedrk FaDI gntvk DCOP_KLUMA : 94- 97: fedrk FaDI gntvk DCOP_MYCBO : 44- 47: dglaa FcDI cvraf DCOP_MYXXA : 235- 238: aqgag FdDL krlfa DCOP_NEUCR : 108- 111: fedrk FvDI gstvq DCOP_PENCH : 99- 102: fedrk FiDI gntvq DCOP_PHYBL : 96- 99: fedrk FaDI gntvk DCOP_RHINI : 94- 97: fedrk FaDI gntvk DCOP_RHIRA : 94- 97: fedrk FaDI gntvk DCOP_SALTY : 69- 72: rgfdv FlDL kfhdi DCOP_SALTY : 74- 77: fldlk FhDI pntta DCOP_SCHCO : 96- 99: fedrk FaDI gntva DCOP_SCHPO : 96- 99: fedrk FaDI gntvk DCOP_TRIRE : 102- 105: fedrk FgDI ghtve DCOP_USTMA : 96- 99: fedrk FaDI gntvs DCOP_YEAST : 94- 97: fedrk FaDI gntvk PYR5_BOVIN : 315- 318: fedrk FaDI gntvk PYR5_DICDI : 314- 317: fedrk FaDI gntvk PYR5_DROME : 321- 324: medrk FaDI gntvs PYR5_HUMAN : 315- 318: fedrk FaDI gntvk PYR5_MOUSE : 100- 103: fedrk FaDI gntvk I 9: 11.0102 61( 32) G-x(0,1)-D-x(0,2)-G Occurences: 61(32) DCOP_ASPNG : 222- 226: nissk G-DklG qqyqt DCOP_BACCL : 101- 105: eaaie GlDa-G tpsgr DCOP_BACCL : 154- 157: lakes GlD--G vvcsa DCOP_BACSU : 155- 158: qaees GlD--G vvcsv DCOP_CANAL : 209- 214: mtpgv GlDdkG dglgq DCOP_CANAL : 214- 216: glddk G-D--G lgqqy DCOP_CANAL : 214- 218: glddk G-DglG qqyrt DCOP_CANBO : 194- 198: qnqmg GsDe-G fdwii DCOP_CANBO : 209- 214: mtpgv GlDdkG dalgq DCOP_CANBO : 214- 218: glddk G-DalG qqyrt DCOP_CANGA : 190- 194: qkdmg GrDe-G fdwli DCOP_CANGA : 205- 210: mtpgv GlDdkG dalgq DCOP_CANGA : 210- 214: glddk G-DalG qqyrt DCOP_CANMA : 191- 195: qrdmg GhDe-G fdwiv DCOP_CANMA : 206- 211: mtpgv GlDdkG dglgq DCOP_CANMA : 211- 213: glddk G-D--G lgqqy DCOP_CANMA : 211- 215: glddk G-DglG qqyrt DCOP_CEPAC : 103- 106: edrkf G-Di-G ntvel DCOP_CEPAC : 322- 324: daelr G-D--G kgqqy DCOP_CEPAC : 322- 326: daelr G-DgkG qqynt DCOP_ECOLI : 162- 165: ltqkc GlD--G vvcsa DCOP_EMENI : 220- 224: nlsdk G-DklG qqyqt DCOP_HAEIN : 150- 153: ltqra GlD--G vvcsp DCOP_HAEIN : 183- 187: girpi GtDf-G dqrrv DCOP_HANPO : 204- 209: mtpgv GlDdkG dslgq DCOP_HANPO : 209- 213: glddk G-DslG qqyrt DCOP_KLULA : 205- 210: mtpgv GlDdkG dalgq DCOP_KLULA : 210- 214: glddk G-DalG qqyrt DCOP_KLUMA : 205- 210: mtpgv GlDdkG dalgq DCOP_KLUMA : 210- 214: glddk G-DalG qqyrt DCOP_MYCBO : 97- 100: adakr G-Di-G atmsa DCOP_MYXXA : 101- 104: ldvkr G-Di-G stmea DCOP_MYXXA : 170- 173: lqmsr GeD--G rtvae DCOP_NEUCR : 340- 342: eeapq G-D--G lgqqy DCOP_NEUCR : 340- 344: eeapq G-DglG qqynt DCOP_PENCH : 223- 227: nlssk G-DklG qqyqt DCOP_PHYBL : 203- 208: mtpgv GlDikG dglgq DCOP_PHYBL : 208- 210: gldik G-D--G lgqqy DCOP_PHYBL : 208- 212: gldik G-DglG qqyrt DCOP_RHINI : 201- 206: mspgv GlDvkG dglgq DCOP_RHINI : 206- 208: gldvk G-D--G lgqqy DCOP_RHINI : 206- 210: gldvk G-DglG qqyrt DCOP_RHIRA : 201- 206: mspgv GlDvkG dglgq DCOP_RHIRA : 206- 208: gldvk G-D--G lgqqy DCOP_RHIRA : 206- 210: gldvk G-DglG qqyrt DCOP_SALTY : 162- 165: ltqqc GlD--G vvcsa DCOP_SCHCO : 211- 216: ltpgv GlDvkG dgmgq DCOP_SCHCO : 216- 218: gldvk G-D--G mgqqy DCOP_SCHCO : 216- 220: gldvk G-DgmG qqyrt DCOP_SCHPO : 202- 207: mspgi GlDvkG dglgq DCOP_SCHPO : 207- 209: gldvk G-D--G lgqqy DCOP_SCHPO : 207- 211: gldvk G-DglG qqyrt DCOP_TRIRE : 103- 106: edrkf G-Di-G htvel DCOP_TRIRE : 204- 206: ysnrs G-D--G rkgsi DCOP_TRIRE : 325- 328: tngsv GgD--G qgqqy DCOP_TRIRE : 325- 330: tngsv GgDgqG qqynt DCOP_TRIRE : 326- 328: ngsvg G-D--G qgqqy DCOP_TRIRE : 326- 330: ngsvg G-DgqG qqynt DCOP_USTMA : 208- 213: ltpgv GlDvkG dglgq DCOP_USTMA : 213- 215: gldvk G-D--G lgqqy DCOP_USTMA : 213- 217: gldvk G-DglG qqyrt DCOP_YEAST : 190- 194: qrdmg GrDe-G ydwli DCOP_YEAST : 205- 210: mtpgv GlDdkG dalgq DCOP_YEAST : 210- 214: glddk G-DalG qqyrt PYR5_BOVIN : 424- 429: vqlea GgDnlG qqyhs PYR5_BOVIN : 425- 429: qleag G-DnlG qqyhs PYR5_DICDI : 425- 429: qfnst G-DamG qqynt PYR5_DROME : 437- 442: vkide GvDqlG qqyqs PYR5_DROME : 456- 460: vvker GaDi-G vvgrg PYR5_HUMAN : 424- 429: vqlea GgDnlG qqyns PYR5_HUMAN : 425- 429: qleag G-DnlG qqyns PYR5_MOUSE : 209- 214: vqlet GgDhlG qqyns PYR5_MOUSE : 210- 214: qletg G-DhlG qqyns J 10: 11.0102 42( 32) D-x(0,1)-G-x(0,2)-V Occurences: 42(32) DCOP_ASPNG : 98- 103: drkfi DiGntV qkqyh DCOP_BACCL : 156- 158: kesgl D-G--V vcsan DCOP_BACCL : 156- 159: kesgl D-Gv-V csane DCOP_BACSU : 157- 159: eesgl D-G--V vcsvh DCOP_BACSU : 157- 160: eesgl D-Gv-V csvhe DCOP_CANAL : 98- 103: drkfa DiGntV kkqyi DCOP_CANBO : 100- 105: drkfa DiGntV ksqyk DCOP_CANGA : 96- 101: drkfa DiGntV klqyt DCOP_CANMA : 97- 102: drkfa DiGntV khqyt DCOP_CEPAC : 104- 109: drkfg DiGntV elqyt DCOP_ECOLI : 90- 93: vaaaa DlG--V wmvnv DCOP_ECOLI : 164- 166: qkcgl D-G--V vcsaq DCOP_ECOLI : 164- 167: qkcgl D-Gv-V csaqe DCOP_EMENI : 98- 103: drkfi DiGntV qkqyh DCOP_HAEIN : 78- 81: vrsaa DlG--V wmvdl DCOP_HAEIN : 152- 154: qragl D-G--V vcspq DCOP_HAEIN : 152- 155: qragl D-Gv-V cspqe DCOP_HANPO : 95- 100: drkfa DiGntV klqyk DCOP_KLULA : 96- 101: drkfa DiGntV klqyt DCOP_KLUMA : 96- 101: drkfa DiGntV klqyt DCOP_MYCBO : 166- 170: qnaaa D-GrsV aqlvv DCOP_MYXXA : 172- 176: msrge D-GrtV aeala DCOP_MYXXA : 211- 214: tlpds DrG--V ierlg DCOP_NEUCR : 110- 115: drkfv DiGstV qkqyt DCOP_PENCH : 101- 106: drkfi DiGntV qkqyh DCOP_PHYBL : 98- 103: drkfa DiGntV khqye DCOP_RHINI : 96- 101: drkfa DiGntV khqya DCOP_RHIRA : 96- 101: drkfa DiGntV khqya DCOP_SALTY : 90- 93: vaaaa DlG--V wmvnv DCOP_SALTY : 140- 143: tsdlh DlG--V tlspa DCOP_SALTY : 164- 166: qqcgl D-G--V vcsaq DCOP_SALTY : 164- 167: qqcgl D-Gv-V csaqe DCOP_SCHCO : 98- 103: drkfa DiGntV alqys DCOP_SCHCO : 233- 237: qvvqe D-GcdV iivgr DCOP_SCHPO : 98- 103: drkfa DiGntV klqya DCOP_TRIRE : 104- 109: drkfg DiGhtV elqyt DCOP_USTMA : 98- 103: drkfa DiGntV slqys DCOP_YEAST : 96- 101: drkfa DiGntV klqys PYR5_BOVIN : 317- 322: drkfa DiGntV kkqye PYR5_DICDI : 316- 321: drkfa DiGntV kyqfe PYR5_DICDI : 410- 413: lpsmt D-Gl-V lmtpg PYR5_DROME : 210- 214: vqins D-GtfV ggdkv PYR5_DROME : 323- 328: drkfa DiGntV slqyg PYR5_DROME : 435- 438: pgvki DeG--V dqlgq PYR5_DROME : 458- 461: kerga DiG--V vgrgi PYR5_DROME : 458- 462: kerga DiGv-V grgil PYR5_HUMAN : 317- 322: drkfa DiGntV kkqye PYR5_MOUSE : 102- 107: drkfa DiGntV kkqye K 11: 11.0102 66( 32) G-x(2,3)-V-x(0,2)-L Occurences: 66(32) DCOP_ASPNG : 128- 135: csilp GegiVeaL aqtas DCOP_BACCL : 42- 49: lyyqe GpaiVafL keqgh DCOP_BACCL : 53- 58: flkeq Gha-Vf-L dlklh DCOP_BACSU : 43- 50: lfyqe GpsiVkqL kernc DCOP_CANAL : 54- 59: lidkl Gpy-Vc-L ikthi DCOP_CANAL : 128- 135: ahgvt GngvVegL kqgak DCOP_CANBO : 76- 81: dfsye Gti-Vp-L lalak DCOP_CANBO : 76- 82: dfsye Gti-VplL alakk DCOP_CANBO : 130- 137: ahgvt GsgiVtgL kqaae DCOP_CANGA : 98- 103: kfadi Gnt-Vk-L qytsg DCOP_CANGA : 126- 133: ahgvt GqgiVtgL kqgae DCOP_CANMA : 73- 78: dfsye Gti-Vp-L lelar DCOP_CANMA : 73- 79: dfsye Gti-VplL elark DCOP_CANMA : 127- 134: ahgvt GagvVdgL kqgal DCOP_CEPAC : 57- 63: vadkv GpsiVv-L kthyd DCOP_CEPAC : 106- 111: kfgdi Gnt-Ve-L qytqg DCOP_CEPAC : 134- 141: vnmvp GkasVtsL anaaa DCOP_ECOLI : 54- 61: mftlf GpqfVreL qqrgf DCOP_EMENI : 128- 135: cailp GegiVeaL aqttk DCOP_HAEIN : 42- 49: mfttl GinfVkqL hqrnf DCOP_HAEIN : 80- 86: saadl GvwmVd-L hasgg DCOP_HANPO : 97- 102: kfadi Gnt-Vk-L qykgg DCOP_HANPO : 125- 132: ahgvt GagiVegL kqaae DCOP_KLULA : 72- 77: dfsye Gtv-Vp-L kalae DCOP_KLULA : 98- 103: kfadi Gnt-Vk-L qytsg DCOP_KLULA : 126- 133: ahgvt GagiVagL kqgaq DCOP_KLUMA : 98- 103: kfadi Gnt-Vk-L qytsg DCOP_KLUMA : 126- 133: ahgvt GagiVagL kqgae DCOP_MYCBO : 72- 76: sygaa Gfa-V--L ertia DCOP_MYCBO : 143- 149: vaaah Grg-VfvL aatsn DCOP_MYCBO : 145- 149: aahgr Gvf-V--L aatsn DCOP_MYCBO : 167- 173: naaad Grs-VaqL vvdqv DCOP_MYCBO : 251- 257: evlra Gpg-VpeL raage DCOP_MYXXA : 76- 80: rhgpe Glq-V--L qelmr DCOP_NEUCR : 63- 69: ladkv GpsiVv-L kthyd DCOP_PENCH : 131- 138: csilp GegiVeaL aqtaq DCOP_PHYBL : 55- 61: iadsv Gpy-VcvL kthid DCOP_PHYBL : 134- 140: egiik GlgeVg-L plgrg DCOP_RHINI : 132- 138: egiik GlaeVg-L plgrg DCOP_RHIRA : 53- 59: iadav Gpf-VcvL kthid DCOP_RHIRA : 132- 138: egiik GlgeVg-L plgrg DCOP_SALTY : 54- 61: mftlf GpqlVrdL qqrgf DCOP_SALTY : 65- 70: dlqqr Gfd-Vf-L dlkfh DCOP_SCHCO : 100- 105: kfadi Gnt-Va-L qyssg DCOP_SCHPO : 100- 105: kfadi Gnt-Vk-L qyasg DCOP_SCHPO : 134- 140: egiiq GlkeVg-L plgrg DCOP_TRIRE : 57- 63: ladki GpsiVv-L kthyd DCOP_TRIRE : 106- 111: kfgdi Ght-Ve-L qytgg DCOP_TRIRE : 134- 141: vnmvp GkasVasL aqgak DCOP_TRIRE : 189- 194: avngm GsigV--L dkpiy DCOP_USTMA : 55- 60: vceav Grn-Vc-L vkthi DCOP_USTMA : 100- 105: kfadi Gnt-Vs-L qysag DCOP_YEAST : 98- 103: kfadi Gnt-Vk-L qysag DCOP_YEAST : 126- 133: ahgvv GpgiVsgL kqaae PYR5_BOVIN : 9- 15: adall Gsl-VtgL ydvqa PYR5_BOVIN : 24- 28: qafkf Gnf-V--L ksgls PYR5_BOVIN : 347- 354: ahavp GsgvVkgL eevgl PYR5_BOVIN : 353- 359: sgvvk GleeVg-L plhra PYR5_DICDI : 114- 118: grfke Gdn-V--L vvedl PYR5_DICDI : 127- 131: dlvts Gas-V--L etvrd PYR5_DROME : 325- 330: kfadi Gnt-Vs-L qygkg PYR5_HUMAN : 9- 15: araal Gpl-VtgL ydvqa PYR5_HUMAN : 24- 28: qafkf Gdf-V--L ksgls PYR5_HUMAN : 129- 133: dvvts Gss-V--L etvev PYR5_HUMAN : 347- 354: ahvvp GsgvVkgL qevgl PYR5_HUMAN : 353- 359: sgvvk GlqeVg-L plhrg PYR5_MOUSE : 132- 139: ahvvp GsgvVkgL qevgl PYR5_MOUSE : 138- 144: sgvvk GlqeVg-L plhra L 12: 11.0061 48( 32) V-x-G-x(3)-[GQT] Occurences: 48(32) DCOP_ASPNG : 184- 190: kyknf VmGfvsT rslge DCOP_BACCL : 211- 217: gsdyi VvGrslT raadp DCOP_BACSU : 212- 218: gssai VvGrsiT kaedp DCOP_CANAL : 132- 138: tgngv VeGlkqG akett DCOP_CANAL : 183- 189: sdkef ViGfiaQ rdmgg DCOP_CANBO : 183- 189: tdkdf ViGfiaQ nqmgg DCOP_CANGA : 130- 136: tgqgi VtGlkqG aeett DCOP_CANGA : 179- 185: sdkdf ViGfiaQ kdmgg DCOP_CANMA : 131- 137: tgagv VdGlkqG alett DCOP_CANMA : 180- 186: ldkef ViGfiaQ rdmgg DCOP_CEPAC : 70- 76: thydm VaGwdfT petgt DCOP_CEPAC : 284- 290: ehkdf VmGfvsQ ealns DCOP_ECOLI : 219- 225: gvdym ViGrpvT qsvdp DCOP_EMENI : 184- 190: kykgf VmGfvsT ralse DCOP_HAEIN : 207- 213: gsdyl ViGrpiT qadnp DCOP_HANPO : 178- 184: sdkef ViGfiaQ rdmgg DCOP_KLULA : 130- 136: tgagi VaGlkqG aqevt DCOP_KLULA : 179- 185: sdkdf ViGfiaQ ndmgg DCOP_KLUMA : 130- 136: tgagi VaGlkqG aeevt DCOP_KLUMA : 179- 185: sdkdf ViGfiaQ ndmgg DCOP_MYCBO : 215- 221: tgpvl VpGvgvQ ggrpe DCOP_MYXXA : 198- 204: qdaap VaGavmG atlpd DCOP_NEUCR : 284- 290: knkgf VmGyvaQ qnlng DCOP_PENCH : 187- 193: kypsf VlGfvsT rslge DCOP_PHYBL : 178- 184: rnkdf VfGfiaQ hkmne DCOP_RHINI : 176- 182: rnkdf VfGfiaQ nkmnq DCOP_RHINI : 204- 210: gvgld VkGdglG qqyrt DCOP_RHIRA : 176- 182: rnkdf VfGfiaQ hkmne DCOP_RHIRA : 204- 210: gvgld VkGdglG qqyrt DCOP_SALTY : 219- 225: gvdym ViGrpvT qsvdp DCOP_SCHCO : 178- 184: enrgf ViGfiaQ rrmdg DCOP_SCHCO : 214- 220: gvgld VkGdgmG qqyrt DCOP_SCHPO : 205- 211: gigld VkGdglG qqyrt DCOP_TRIRE : 285- 291: ehkdf VmGfisQ etlnt DCOP_TRIRE : 324- 330: qtngs VgGdgqG qqynt DCOP_USTMA : 211- 217: gvgld VkGdglG qqyrt DCOP_YEAST : 179- 185: sdkdf ViGfiaQ rdmgg PYR5_BOVIN : 71- 77: infdt VcGvpyT alpla PYR5_BOVIN : 397- 403: ehsef ViGfisG srvsm PYR5_DICDI : 69- 75: etpal VcGvpyT alpia PYR5_DICDI : 350- 356: agssi VdGfksG lkeyg PYR5_DICDI : 396- 402: nnkee VmGlicQ erlps PYR5_DROME : 72- 78: lsakh VcGvpyT alpra PYR5_DROME : 214- 220: sdgtf VgGdkvT fpaan PYR5_DROME : 409- 415: advdf VaGvvcQ ssdaf PYR5_HUMAN : 71- 77: isfdt VcGvpyT alpla PYR5_HUMAN : 397- 403: ehsef VvGfisG srvsm PYR5_MOUSE : 182- 188: ehcef ViGfisG srvsm M 13: 10.5102 39( 32) I-x(0,2)-G-x(1,3)-T Occurences: 39(32) DCOP_ASPNG : 97- 102: edrkf IdiGn--T vqkqy DCOP_ASPNG : 99- 102: rkfid I--Gn--T vqkqy DCOP_BACCL : 210- 217: lgsdy IvvGrslT raadp DCOP_BACSU : 211- 218: kgssa IvvGrsiT kaedp DCOP_CANAL : 99- 102: rkfad I--Gn--T vkkqy DCOP_CANBO : 101- 104: rkfad I--Gn--T vksqy DCOP_CANBO : 163- 169: sskga IahGky-T eetve DCOP_CANGA : 97- 100: rkfad I--Gn--T vklqy DCOP_CANMA : 98- 101: rkfad I--Gn--T vkhqy DCOP_CEPAC : 105- 108: rkfgd I--Gn--T velqy DCOP_ECOLI : 220- 225: vdymv I--GrpvT qsvdp DCOP_EMENI : 97- 102: edrkf IdiGn--T vqkqy DCOP_EMENI : 99- 102: rkfid I--Gn--T vqkqy DCOP_HAEIN : 208- 213: sdylv I--GrpiT qadnp DCOP_HANPO : 96- 99: rkfad I--Gn--T vklqy DCOP_KLULA : 97- 100: rkfad I--Gn--T vklqy DCOP_KLUMA : 97- 100: rkfad I--Gn--T vklqy DCOP_MYCBO : 99- 102: akrgd I--Ga--T msaya DCOP_MYXXA : 103- 106: vkrgd I--Gs--T meaya DCOP_NEUCR : 111- 114: rkfvd I--Gs--T vqkqy DCOP_PENCH : 100- 105: edrkf IdiGn--T vqkqy DCOP_PENCH : 102- 105: rkfid I--Gn--T vqkqy DCOP_PHYBL : 99- 102: rkfad I--Gn--T vkhqy DCOP_RHINI : 97- 100: rkfad I--Gn--T vkhqy DCOP_RHIRA : 97- 100: rkfad I--Gn--T vkhqy DCOP_SALTY : 220- 225: vdymv I--GrpvT qsvdp DCOP_SCHCO : 99- 102: rkfad I--Gn--T valqy DCOP_SCHPO : 99- 102: rkfad I--Gn--T vklqy DCOP_TRIRE : 105- 108: rkfgd I--Gh--T velqy DCOP_USTMA : 99- 102: rkfad I--Gn--T vslqy DCOP_USTMA : 241- 246: ivgrg Iy-Gtl-T teegk DCOP_USTMA : 241- 247: ivgrg Iy-GtltT eegka DCOP_YEAST : 97- 100: rkfad I--Gn--T vklqy PYR5_BOVIN : 318- 321: rkfad I--Gn--T vkkqy PYR5_DICDI : 182- 188: lintl IeaGkl-T grtle PYR5_DICDI : 317- 320: rkfad I--Gn--T vkyqf PYR5_DROME : 324- 327: rkfad I--Gn--T vslqy PYR5_HUMAN : 113- 118: lvegt InpGe--T cliie PYR5_HUMAN : 318- 321: rkfad I--Gn--T vkkqy PYR5_MOUSE : 103- 106: rkfad I--Gn--T vkkqy N 14: 10.5102 109( 32) G-x(2,4)-L-x(2,4)-G Occurences: 109(32) DCOP_ASPNG : 266- 275: qyqke GweayLarv-G gn DCOP_ASPNG : 266- 276: qyqke GweayLarvgG n DCOP_BACCL : 26- 34: lrpfa Gtp--LfvkvG melyy DCOP_BACCL : 34- 42: lfvkv Gme--LyyqeG paiva DCOP_BACCL : 173- 182: ikerc Gasf-LavtpG irfad DCOP_BACSU : 35- 43: lfvkv Gme--LfyqeG psivk DCOP_CANAL : 130- 138: gvtgn GvvegLkq--G akett DCOP_CANAL : 198- 207: ggqee Gfdw-LimtpG vgldd DCOP_CANAL : 207- 214: limtp Gvg--Lddk-G dglgq DCOP_CANAL : 238- 245: diiiv Grg--Lfgk-G rdpdi DCOP_CANAL : 259- 268: ryrna GwnayLkkt-G ql DCOP_CANBO : 207- 214: iimtp Gvg--Lddk-G dalgq DCOP_CANBO : 238- 245: diiiv Grg--Lfgk-G rdpsv DCOP_CANGA : 98- 108: kfadi GntvkLqytsG vykia DCOP_CANGA : 128- 136: gvtgq GivtgLkq--G aeett DCOP_CANGA : 194- 203: ggrde Gfdw-LimtpG vgldd DCOP_CANGA : 203- 210: limtp Gvg--Lddk-G dalgq DCOP_CANGA : 234- 241: diiiv Grg--Lfak-G rdpkt DCOP_CANGA : 255- 264: ryrka GwdayLkri-G n DCOP_CANMA : 129- 137: gvtga GvvdgLkq--G alett DCOP_CANMA : 204- 211: ivmtp Gvg--Lddk-G dglgq DCOP_CANMA : 235- 242: dviiv Grg--Lfgk-G rdpev DCOP_CANMA : 256- 265: ryrda GwnayLkrt-G q DCOP_CEPAC : 106- 116: kfgdi GntveLqytqG aarii DCOP_CEPAC : 236- 242: tiaee Gdm--Lla--G leepp DCOP_CEPAC : 347- 354: diviv Grgi-Lka--G dlqhe DCOP_ECOLI : 181- 190: fkqvf GqefkLvtp-G irpqg DCOP_EMENI : 213- 220: vvftt Gvn--Lsdk-G dklgq DCOP_HAEIN : 169- 178: lrnac GedfkLvtp-G irpig DCOP_HAEIN : 202- 209: aaira Gsdy-Lvi--G rpitq DCOP_HANPO : 97- 106: kfadi GntvkLqyk-G giyrt DCOP_HANPO : 97- 107: kfadi GntvkLqykgG iyrts DCOP_HANPO : 193- 202: ggree Gfdw-LimtpG vgldd DCOP_HANPO : 202- 209: limtp Gvg--Lddk-G dslgq DCOP_HANPO : 233- 240: dviiv Grg--Lfgk-G rdpev DCOP_KLULA : 98- 108: kfadi GntvkLqytsG vyria DCOP_KLULA : 128- 136: gvtga GivagLkq--G aqevt DCOP_KLULA : 194- 203: ggree Gfdw-LimtpG vgldd DCOP_KLULA : 203- 210: limtp Gvg--Lddk-G dalgq DCOP_KLULA : 234- 241: diiiv Grg--Lfak-G rdpkv DCOP_KLUMA : 98- 108: kfadi GntvkLqytsG vyria DCOP_KLUMA : 128- 136: gvtga GivagLkq--G aeevt DCOP_KLUMA : 194- 203: ggree Gydw-LimtpG vgldd DCOP_KLUMA : 203- 210: limtp Gvg--Lddk-G dalgq DCOP_KLUMA : 234- 241: diiiv Grg--Lfak-G rdpvv DCOP_KLUMA : 255- 264: ryrka GwdayLkrv-G rsa DCOP_MYCBO : 211- 217: lsaft Gpv--Lvp--G vgvqg DCOP_MYCBO : 211- 219: lsaft Gpv--LvpgvG vqggr DCOP_MYCBO : 223- 232: vgvqg GrpeaLggl-G gaass DCOP_MYCBO : 223- 233: vgvqg GrpeaLgglgG aassq DCOP_MYCBO : 253- 261: lragp Gvpe-Lraa-G ermrd DCOP_MYXXA : 91- 101: rfksv GtltlLdvkrG digst DCOP_MYXXA : 162- 170: ssnpe Gts--LqmsrG edgrt DCOP_MYXXA : 219- 227: vierl GgallLtp--G igaqg DCOP_MYXXA : 219- 227: vierl Ggal-Lltp-G igaqg DCOP_MYXXA : 219- 227: vierl Gga--LlltpG igaqg DCOP_MYXXA : 219- 229: vierl GgallLtpgiG aqgag DCOP_MYXXA : 220- 227: ierlg Gall-Ltp--G igaqg DCOP_MYXXA : 220- 227: ierlg Gal--Lltp-G igaqg DCOP_MYXXA : 220- 229: ierlg Gall-LtpgiG aqgag DCOP_NEUCR : 327- 334: ihmtp Gck--Lppp-G eeapq DCOP_PENCH : 216- 223: vvftt Gvn--Lssk-G dklgq DCOP_PENCH : 267- 276: qyqqq GweayLarv-G aq DCOP_PHYBL : 130- 139: tvpge GiikgLgev-G lplgr DCOP_PHYBL : 136- 143: iikgl Gevg-Lpl--G rglll DCOP_PHYBL : 136- 145: iikgl Gevg-LplgrG lllla DCOP_PHYBL : 139- 145: glgev Glp--Lgr--G lllla DCOP_PHYBL : 201- 208: vvmtp Gvg--Ldik-G dglgq DCOP_RHINI : 128- 137: tvpge GiikgLaev-G lplgr DCOP_RHINI : 137- 143: glaev Glp--Lgr--G lllla DCOP_RHINI : 199- 206: ivmsp Gvg--Ldvk-G dglgq DCOP_RHIRA : 128- 137: tvpge GiikgLgev-G lplgr DCOP_RHIRA : 134- 141: iikgl Gevg-Lpl--G rglll DCOP_RHIRA : 134- 143: iikgl Gevg-LplgrG lllla DCOP_RHIRA : 137- 143: glgev Glp--Lgr--G lllla DCOP_RHIRA : 199- 206: vvmsp Gvg--Ldvk-G dglgq DCOP_SALTY : 181- 190: fkqaf GaafkLvtp-G irpag DCOP_SCHCO : 100- 110: kfadi GntvaLqyssG vhkia DCOP_SCHCO : 139- 145: glasv Gqp--Lgr--G lllla DCOP_SCHCO : 209- 216: lvltp Gvg--Ldvk-G dgmgq DCOP_SCHPO : 100- 110: kfadi GntvkLqyasG vykia DCOP_SCHPO : 130- 139: tvpge GiiqgLkev-G lplgr DCOP_SCHPO : 139- 145: glkev Glp--Lgr--G lllla DCOP_SCHPO : 200- 207: itmsp Gig--Ldvk-G dglgq DCOP_TRIRE : 106- 115: kfgdi GhtveLqyt-G gsari DCOP_TRIRE : 106- 116: kfgdi GhtveLqytgG sarii DCOP_TRIRE : 236- 243: kaiae Gdes-Lfp--G ieeap DCOP_USTMA : 100- 110: kfadi GntvsLqysaG vhkia DCOP_USTMA : 139- 145: glakv Gqp--Lgr--G lllla DCOP_USTMA : 206- 213: liltp Gvg--Ldvk-G dglgq DCOP_USTMA : 240- 250: iivgr GiygtLtteeG kadkk DCOP_USTMA : 272- 281: rykta GwdayLkri-G qkqsi DCOP_YEAST : 98- 108: kfadi GntvkLqysaG vyria DCOP_YEAST : 194- 203: ggrde Gydw-LimtpG vgldd DCOP_YEAST : 203- 210: limtp Gvg--Lddk-G dalgq DCOP_YEAST : 234- 241: diiiv Grg--Lfak-G rdakv DCOP_YEAST : 255- 264: ryrka GweayLrrc-G qqn PYR5_BOVIN : 24- 31: qafkf Gnfv-Lks--G lsspv PYR5_BOVIN : 104- 111: ekkdy Gtkr-Lie--G avnpg PYR5_BOVIN : 158- 167: vdreq GgrdnLqar-G irlhs PYR5_BOVIN : 159- 167: dreqg Grdn-Lqar-G irlhs PYR5_BOVIN : 349- 358: avpgs GvvkgLeev-G lplhr PYR5_BOVIN : 418- 424: lhltp Gvq--Lea--G gdnlg PYR5_BOVIN : 418- 425: lhltp Gvq--Leag-G dnlgq PYR5_DICDI : 19- 26: maikl Gefk-Lks--G iispi PYR5_DICDI : 102- 109: eakay Gtkq-Lie--G rfkeg PYR5_DICDI : 156- 165: ldrqe GarqaLekq-G yrlhs PYR5_DICDI : 352- 361: ssivd GfksgLkey-G sglll PYR5_DICDI : 411- 418: psmtd Glv--Lmtp-G vqfns PYR5_DROME : 105- 112: eakay Gtkk-Lve--G ifnag PYR5_DROME : 325- 333: kfadi GntvsLqy--G kgiyk PYR5_DROME : 325- 335: kfadi GntvsLqygkG iykis PYR5_DROME : 359- 367: rsilq GlkagLge--G gagke PYR5_DROME : 359- 368: rsilq GlkagLgeg-G agker PYR5_DROME : 424- 431: afafp Gllq-Ltp--G vkide PYR5_HUMAN : 24- 31: qafkf Gdfv-Lks--G lsspi PYR5_HUMAN : 104- 111: etkdy Gtkr-Lve--G tinpg PYR5_HUMAN : 158- 167: ldreq GgkdkLqah-G irlhs PYR5_HUMAN : 159- 167: dreqg Gkdk-Lqah-G irlhs PYR5_HUMAN : 349- 358: vvpgs GvvkgLqev-G lplhr PYR5_HUMAN : 358- 364: glqev Glp--Lhr--G cllia PYR5_HUMAN : 418- 424: lhltp Gvq--Lea--G gdnlg PYR5_HUMAN : 418- 425: lhltp Gvq--Leag-G dnlgq PYR5_MOUSE : 134- 143: vvpgs GvvkgLqev-G lplhr PYR5_MOUSE : 203- 209: lhltp Gvq--Let--G gdhlg PYR5_MOUSE : 203- 210: lhltp Gvq--Letg-G dhlgq O 15: 10.5102 66( 32) R-x(0,2)-L-x(0,2)-A Occurences: 66(32) DCOP_ASPNG : 150- 156: sygpe RglLilA emtsk DCOP_BACCL : 137- 140: elwis Rp-L--A etvah DCOP_BACCL : 214- 219: yivvg Rs-LtrA adplg DCOP_BACSU : 76- 78: nkamk R--L--A slgvd DCOP_BACSU : 113- 118: pagkk RpsLi-A vtqlt DCOP_CANAL : 149- 155: tnqep RglLmlA elssv DCOP_CANBO : 149- 155: vtdep RglLmlA elssk DCOP_CANGA : 145- 151: ttnep RglLmlA elssk DCOP_CANGA : 235- 239: iiivg Rg-Lf-A kgrdp DCOP_CANMA : 146- 152: ttkep RglLmlA elssk DCOP_CEPAC : 47- 53: dvana RelLhvA dkvgp DCOP_CEPAC : 84- 86: tgtga R--L--A klark DCOP_CEPAC : 250- 256: eppln RglLilA qmssa DCOP_CEPAC : 348- 353: ivivg RgiLk-A gdlqh DCOP_ECOLI : 153- 155: adyae R--L--A altqk DCOP_ECOLI : 153- 156: adyae R--La-A ltqkc DCOP_EMENI : 150- 156: kdanq RglLilA emtsk DCOP_HAEIN : 141- 143: meqvl R--L--A hltqr DCOP_HANPO : 144- 150: stdep RglLmlA elssk DCOP_KLULA : 145- 151: vtkep RglLmlA elssk DCOP_KLULA : 235- 239: iiivg Rg-Lf-A kgrdp DCOP_KLUMA : 145- 151: vtkep RglLmlA elssk DCOP_KLUMA : 235- 239: iiivg Rg-Lf-A kgrdp DCOP_MYCBO : 7- 9: tgfgl R--L--A eakar DCOP_MYCBO : 7- 11: tgfgl R--LaeA karrg DCOP_MYCBO : 133- 139: gfgsl RplLevA aahgr DCOP_MYCBO : 245- 250: lpava RevLr-A gpgvp DCOP_MYXXA : 217- 221: rgvie R--LggA llltp DCOP_MYXXA : 240- 243: fddlk R--Lf-A greaq DCOP_MYXXA : 255- 260: iptat RsvLe-A gpdta DCOP_MYXXA : 273- 276: rqale Rh-L--A paraf DCOP_MYXXA : 273- 278: rqale Rh-LapA rafra DCOP_NEUCR : 53- 57: dveha RdlL--A ladkv DCOP_NEUCR : 53- 57: dveha Rd-Ll-A ladkv DCOP_NEUCR : 53- 59: dveha RdlLalA dkvgp DCOP_NEUCR : 250- 256: eapld RglLilA qmssk DCOP_NEUCR : 393- 397: ayqdr RerL--A DCOP_NEUCR : 395- 397: qdrre R--L--A DCOP_PENCH : 153- 159: pygse RglLilA emtsk DCOP_PHYBL : 144- 150: glplg RglLllA emssk DCOP_RHINI : 142- 148: glplg RglLllA emssk DCOP_RHINI : 259- 261: dayle R--L--A lhnk DCOP_RHIRA : 142- 148: glplg RglLllA emssk DCOP_SALTY : 111- 115: mmaaa RdaL--A pfskd DCOP_SCHCO : 144- 150: gqplg RglLllA emstk DCOP_SCHPO : 144- 150: glplg RglLllA emssk DCOP_TRIRE : 47- 53: dvpta RelLylA dkigp DCOP_TRIRE : 228- 232: svssp R--LtkA iaegd DCOP_TRIRE : 251- 257: eapls RglLilA qmssq DCOP_TRIRE : 352- 357: iaivg RgiLk-A sdpve DCOP_USTMA : 144- 150: gqplg RglLllA emsse DCOP_YEAST : 145- 151: vtkep RglLmlA elsck DCOP_YEAST : 235- 239: iiivg Rg-Lf-A kgrda PYR5_BOVIN : 160- 165: reqgg RdnLq-A rgirl PYR5_BOVIN : 264- 270: dvses RelLqlA dalgs PYR5_BOVIN : 363- 369: glplh RacLlvA emssa PYR5_BOVIN : 477- 479: eayls R--L--A v PYR5_DICDI : 230- 234: kpfee RakL--A snpma PYR5_DROME : 10- 13: nsdkm Ra-L--A lklfe PYR5_DROME : 237- 241: ltyes RanL--A ksava PYR5_DROME : 464- 469: igvvg RgiLk-A sspkq PYR5_DROME : 480- 485: aaqty RdrLw-A ayqdr PYR5_DROME : 480- 486: aaqty RdrLwaA yqdrv PYR5_DROME : 482- 485: qtyrd R--Lw-A ayqdr PYR5_DROME : 482- 486: qtyrd R--LwaA yqdrv PYR5_HUMAN : 264- 270: dvsla RelLqlA dalgp PYR5_HUMAN : 363- 369: glplh RgcLliA emsst PYR5_HUMAN : 459- 462: isaad R--Le-A aemyr PYR5_HUMAN : 459- 463: isaad R--LeaA emyrk PYR5_MOUSE : 49- 55: dvsea RelLqlA dalgp PYR5_MOUSE : 148- 154: glplh RacLliA emssa PYR5_MOUSE : 236- 240: viivg RgiL--A aanrl PYR5_MOUSE : 236- 241: viivg RgiLa-A anrle PYR5_MOUSE : 236- 242: viivg RgiLaaA nrlea PYR5_MOUSE : 244- 247: laaan R--Le-A aemyr PYR5_MOUSE : 244- 248: laaan R--LeaA emyrk PYR5_MOUSE : 262- 264: eayls R--L--A vq P 16: 10.5102 80( 32) L-x(2,4)-G-x(2,4)-A Occurences: 80(32) DCOP_ASPNG : 50- 59: kelld LadrlGpyi-A vikth DCOP_ASPNG : 126- 134: incsi Lpge-Give-A laqta DCOP_BACCL : 37- 47: kvgme LyyqeGpaivA flkeq DCOP_BACCL : 177- 186: cgasf LavtpGirf-A ddaah DCOP_BACSU : 103- 109: aaleg Lee--Gtp--A gkkrp DCOP_CANAL : 157- 164: lmlae Lssv-Gsl--A ygeys DCOP_CANBO : 157- 164: lmlae Lssk-Gai--A hgkyt DCOP_CANGA : 103- 113: gntvk LqytsGvykiA ewadi DCOP_CANGA : 153- 160: lmlae Lssk-Gsl--A hgeyt DCOP_CANMA : 154- 161: lmlae Lssk-Gsl--A ygeyt DCOP_CEPAC : 248- 256: leepp Lnr--GllilA qmssa DCOP_ECOLI : 114- 121: aarea Lvpf-Gkd--A pllia DCOP_EMENI : 50- 59: aelld LadrlGpyi-A vlkth DCOP_EMENI : 126- 134: incai Lpge-Give-A laqtt DCOP_EMENI : 164- 171: tskgs Lat--Gesq-A rsvey DCOP_HAEIN : 102- 109: dakki Lepy-Gkd--A pllia DCOP_HAEIN : 126- 133: medld Llqi-Gin--A spmeq DCOP_HAEIN : 127- 133: edldl Lqi--Gin--A spmeq DCOP_HANPO : 152- 159: lmlae Lssk-Gsl--A tgeyt DCOP_KLULA : 103- 113: gntvk LqytsGvyriA ewsdi DCOP_KLULA : 153- 160: lmlae Lssk-Gsl--A hgeyt DCOP_KLUMA : 103- 113: gntvk LqytsGvyriA ewsdi DCOP_KLUMA : 153- 160: lmlae Lssk-Gsl--A hgeyt DCOP_KLUMA : 260- 267: gwday Lkrv-Grs--A DCOP_MYCBO : 28- 35: dphpe Llr--Gwdl-A ttadg DCOP_MYCBO : 228- 235: grpea Lggl-Gga--A ssqll DCOP_MYXXA : 31- 41: dpsrd LltrwGlpdnA rglrd DCOP_MYXXA : 32- 41: psrdl Ltrw-GlpdnA rglrd DCOP_MYXXA : 180- 186: tvaea Lad--Glr--A fnekp DCOP_MYXXA : 222- 230: rlgga LlltpGig--A qgagf DCOP_MYXXA : 223- 230: lggal Lltp-Gig--A qgagf DCOP_MYXXA : 224- 230: ggall Ltp--Gig--A qgagf DCOP_MYXXA : 224- 233: ggall LtpgiGaqg-A gfddl DCOP_MYXXA : 241- 247: ddlkr Lfa--Gre--A qvipt DCOP_MYXXA : 258- 265: atrsv Lea--Gpdt-A alrqa DCOP_MYXXA : 258- 266: atrsv Lea--GpdtaA lrqal DCOP_NEUCR : 248- 256: ieeap Ldr--GllilA qmssk DCOP_NEUCR : 330- 337: tpgck Lppp-Gee--A pqgdg DCOP_NEUCR : 353- 362: ntpdn LvnikGtdi-A ivgrg DCOP_PENCH : 129- 137: incsi Lpge-Give-A laqta DCOP_PENCH : 167- 175: tskgs Lat--GaytsA svdia DCOP_PHYBL : 140- 150: lgevg LplgrGllllA emssk DCOP_PHYBL : 142- 150: evglp Lgr--GllllA emssk DCOP_RHINI : 138- 148: laevg LplgrGllllA emssk DCOP_RHINI : 140- 148: evglp Lgr--GllllA emssk DCOP_RHIRA : 138- 148: lgevg LplgrGllllA emssk DCOP_RHIRA : 140- 148: evglp Lgr--GllllA emssk DCOP_SALTY : 186- 194: gaafk Lvtp-Girp-A gseag DCOP_SCHCO : 7- 13: taahk Lty--Gqr--A arftn DCOP_SCHCO : 7- 14: taahk Lty--Gqra-A rftnp DCOP_SCHCO : 105- 115: gntva LqyssGvhkiA swshi DCOP_SCHCO : 142- 150: svgqp Lgr--GllllA emstk DCOP_SCHCO : 158- 166: stkgs Lat--GayteA avqma DCOP_SCHPO : 105- 115: gntvk LqyasGvykiA swahi DCOP_SCHPO : 140- 150: lkevg LplgrGllllA emssk DCOP_SCHPO : 142- 150: evglp Lgr--GllllA emssk DCOP_TRIRE : 111- 118: ghtve Lqyt-Ggs--A riidw DCOP_TRIRE : 240- 247: egdes Lfp--Giee-A plsrg DCOP_TRIRE : 249- 257: ieeap Lsr--GllilA qmssq DCOP_TRIRE : 339- 348: ntphk LigiaGsdi-A ivgrg DCOP_USTMA : 105- 115: gntvs LqysaGvhkiA swshi DCOP_USTMA : 142- 150: kvgqp Lgr--GllllA emsse DCOP_USTMA : 158- 166: ssega Ltk--GdytqA cvdea DCOP_YEAST : 103- 113: gntvk LqysaGvyriA ewadi DCOP_YEAST : 153- 160: lmlae Lsck-Gsl--A tgeyt DCOP_YEAST : 237- 244: ivgrg Lfak-Grd--A kvege PYR5_BOVIN : 225- 231: kepke Lsf--Gar--A elpgt PYR5_BOVIN : 377- 385: ssagt Lat--GsyteA avqma PYR5_BOVIN : 413- 423: mkpef LhltpGvqleA ggdnl PYR5_BOVIN : 415- 423: peflh Ltp--GvqleA ggdnl PYR5_DICDI : 68- 76: qetpa Lvc--GvpytA lpiat PYR5_DICDI : 77- 86: vpyta LpiatGmsi-A nnipm PYR5_DICDI : 151- 160: dvvvl LdrqeGarq-A lekqg PYR5_DROME : 109- 116: ygtkk Lve--Gifn-A gdtcl PYR5_DROME : 360- 369: silqg LkaglGegg-A gkerg PYR5_HUMAN : 225- 231: eapke Lsf--Gar--A elpri PYR5_HUMAN : 359- 369: lqevg LplhrGclliA emsst PYR5_HUMAN : 361- 369: evglp Lhr--GclliA emsst PYR5_HUMAN : 377- 385: sstgs Lat--GdytrA avrma PYR5_HUMAN : 413- 423: mkpef LhltpGvqleA ggdnl PYR5_HUMAN : 415- 423: peflh Ltp--GvqleA ggdnl PYR5_MOUSE : 10- 16: kacke Lsf--Gar--A elpgt PYR5_MOUSE : 162- 170: ssags Lat--GnytkA avgma Q 17: 10.5102 64( 32) L-x(1,3)-G-x(2,4)-A Occurences: 64(32) DCOP_ASPNG : 126- 134: incsi LpgeGive-A laqta DCOP_BACCL : 155- 162: akesg Ld--GvvcsA neaaf DCOP_BACSU : 103- 109: aaleg Lee-Gtp--A gkkrp DCOP_CANAL : 157- 164: lmlae LssvGsl--A ygeys DCOP_CANBO : 157- 164: lmlae LsskGai--A hgkyt DCOP_CANGA : 153- 160: lmlae LsskGsl--A hgeyt DCOP_CANMA : 154- 161: lmlae LsskGsl--A ygeyt DCOP_CEPAC : 248- 256: leepp Lnr-GllilA qmssa DCOP_CEPAC : 335- 341: ntpek Li--Gvcg-A diviv DCOP_ECOLI : 114- 121: aarea LvpfGkd--A pllia DCOP_ECOLI : 163- 170: tqkcg Ld--GvvcsA qeavr DCOP_EMENI : 126- 134: incai LpgeGive-A laqtt DCOP_EMENI : 164- 171: tskgs Lat-Gesq-A rsvey DCOP_HAEIN : 102- 109: dakki LepyGkd--A pllia DCOP_HAEIN : 126- 133: medld LlqiGin--A spmeq DCOP_HAEIN : 127- 133: edldl Lqi-Gin--A spmeq DCOP_HANPO : 152- 159: lmlae LsskGsl--A tgeyt DCOP_KLULA : 153- 160: lmlae LsskGsl--A hgeyt DCOP_KLUMA : 153- 160: lmlae LsskGsl--A hgeyt DCOP_KLUMA : 260- 267: gwday LkrvGrs--A DCOP_MYCBO : 28- 35: dphpe Llr-Gwdl-A ttadg DCOP_MYCBO : 29- 35: phpel Lr--Gwdl-A ttadg DCOP_MYCBO : 228- 235: grpea LgglGga--A ssqll DCOP_MYCBO : 228- 234: grpea Lg--Glgg-A assql DCOP_MYCBO : 228- 235: grpea Lg--GlggaA ssqll DCOP_MYXXA : 32- 41: psrdl LtrwGlpdnA rglrd DCOP_MYXXA : 180- 186: tvaea Lad-Glr--A fnekp DCOP_MYXXA : 223- 230: lggal LltpGig--A qgagf DCOP_MYXXA : 224- 230: ggall Ltp-Gig--A qgagf DCOP_MYXXA : 241- 247: ddlkr Lfa-Gre--A qvipt DCOP_MYXXA : 258- 265: atrsv Lea-Gpdt-A alrqa DCOP_MYXXA : 258- 266: atrsv Lea-GpdtaA lrqal DCOP_NEUCR : 248- 256: ieeap Ldr-GllilA qmssk DCOP_NEUCR : 293- 300: vaqqn Ln--GitkeA lapsy DCOP_NEUCR : 330- 337: tpgck LpppGee--A pqgdg DCOP_PENCH : 129- 137: incsi LpgeGive-A laqta DCOP_PENCH : 167- 175: tskgs Lat-GaytsA svdia DCOP_PHYBL : 142- 150: evglp Lgr-GllllA emssk DCOP_RHINI : 140- 148: evglp Lgr-GllllA emssk DCOP_RHIRA : 140- 148: evglp Lgr-GllllA emssk DCOP_SALTY : 163- 170: tqqcg Ld--GvvcsA qeavr DCOP_SALTY : 186- 194: gaafk LvtpGirp-A gseag DCOP_SCHCO : 7- 13: taahk Lty-Gqr--A arftn DCOP_SCHCO : 7- 14: taahk Lty-Gqra-A rftnp DCOP_SCHCO : 142- 150: svgqp Lgr-GllllA emstk DCOP_SCHCO : 158- 166: stkgs Lat-GayteA avqma DCOP_SCHPO : 142- 150: evglp Lgr-GllllA emssk DCOP_TRIRE : 111- 118: ghtve LqytGgs--A riidw DCOP_TRIRE : 240- 247: egdes Lfp-Giee-A plsrg DCOP_TRIRE : 249- 257: ieeap Lsr-GllilA qmssq DCOP_USTMA : 142- 150: kvgqp Lgr-GllllA emsse DCOP_USTMA : 158- 166: ssega Ltk-GdytqA cvdea DCOP_YEAST : 153- 160: lmlae LsckGsl--A tgeyt DCOP_YEAST : 237- 244: ivgrg LfakGrd--A kvege PYR5_BOVIN : 225- 231: kepke Lsf-Gar--A elpgt PYR5_BOVIN : 233- 240: garae Lp--GthpvA akllr PYR5_BOVIN : 377- 385: ssagt Lat-GsyteA avqma PYR5_BOVIN : 415- 423: peflh Ltp-GvqleA ggdnl PYR5_DICDI : 68- 76: qetpa Lvc-GvpytA lpiat PYR5_DROME : 109- 116: ygtkk Lve-Gifn-A gdtcl PYR5_DROME : 357- 362: pgrsi Lq--Glk--A glgeg PYR5_HUMAN : 225- 231: eapke Lsf-Gar--A elpri PYR5_HUMAN : 361- 369: evglp Lhr-GclliA emsst PYR5_HUMAN : 377- 385: sstgs Lat-GdytrA avrma PYR5_HUMAN : 415- 423: peflh Ltp-GvqleA ggdnl PYR5_MOUSE : 10- 16: kacke Lsf-Gar--A elpgt PYR5_MOUSE : 18- 25: garae Lp--GthplA skllr PYR5_MOUSE : 162- 170: ssags Lat-GnytkA avgma R 18: 10.5102 51( 32) R-x(2,4)-A-x(0,2)-D Occurences: 51(32) DCOP_ASPNG : 247- 254: fiiag RgiyaAp-D pvqaa DCOP_ASPNG : 247- 254: fiiag Rgiy-AapD pvqaa DCOP_BACCL : 78- 82: mkgla Rvg--A--D lvnvh DCOP_BACCL : 184- 192: vtpgi RfaddAahD qvrvv DCOP_BACCL : 214- 221: yivvg RsltrAa-D plgay DCOP_BACSU : 185- 193: vtpgi RmsedAanD qvrva DCOP_BACSU : 215- 222: aivvg RsitkAe-D pvkay DCOP_CANAL : 94- 98: mifed Rkf--A--D igntv DCOP_CANBO : 96- 100: mifed Rkf--A--D igntv DCOP_CANGA : 92- 96: lifed Rkf--A--D igntv DCOP_CANGA : 250- 257: ktege Ryrk-AgwD aylkr DCOP_CANMA : 93- 97: mifed Rkf--A--D igntv DCOP_CEPAC : 348- 355: ivivg RgilkAg-D lqhea DCOP_ECOLI : 26- 34: ldyhn RddalAfvD kidpr DCOP_EMENI : 245- 251: fiiag RgiykA--D dpvea DCOP_EMENI : 245- 252: fiiag RgiykAd-D pveav DCOP_HAEIN : 71- 78: pntva RavrsAa-D lgvwm DCOP_HAEIN : 74- 78: varav Rsa--A--D lgvwm DCOP_HAEIN : 210- 216: ylvig RpitqA--D npaev DCOP_HANPO : 91- 95: mifed Rkf--A--D igntv DCOP_HANPO : 110- 116: kggiy RtskwA--D itnah DCOP_KLULA : 92- 96: lifed Rkf--A--D igntv DCOP_KLUMA : 92- 96: lifed Rkf--A--D igntv DCOP_KLUMA : 250- 257: vvege Ryrk-AgwD aylkr DCOP_MYCBO : 50- 54: cdicv Raf--A--D favvk DCOP_MYXXA : 174- 182: rgedg RtvaeAlaD glraf DCOP_MYXXA : 255- 263: iptat RsvleAgpD taalr DCOP_NEUCR : 53- 60: dveha Rdll-AlaD kvgps DCOP_NEUCR : 366- 373: iaivg RgiitAa-D ppaea DCOP_NEUCR : 383- 391: aeryr RkawkAyqD rrerl DCOP_PENCH : 248- 255: fiisg RgiyaAa-D pveaa DCOP_PENCH : 248- 255: fiisg Rgiy-AaaD pveaa DCOP_PHYBL : 94- 98: lifed Rkf--A--D igntv DCOP_RHINI : 92- 96: lffed Rkf--A--D igntv DCOP_RHINI : 247- 254: veqaq Ryrq-AgwD ayler DCOP_RHIRA : 92- 96: lifed Rkf--A--D igntv DCOP_RHIRA : 247- 254: eaqak Ryrq-AgwD ayler DCOP_SALTY : 26- 34: ldyhe RdkalAfvD kidpr DCOP_SALTY : 83- 90: pntta RavaaAa-D lgvwm DCOP_SALTY : 83- 90: pntta Rava-AaaD lgvwm DCOP_SALTY : 105- 112: asgga RmmaaAr-D alapf DCOP_SALTY : 105- 112: asgga Rmma-AarD alapf DCOP_SCHCO : 94- 98: lifed Rkf--A--D igntv DCOP_SCHPO : 94- 98: lifed Rkf--A--D igntv DCOP_TRIRE : 352- 359: iaivg RgilkAs-D pveea DCOP_USTMA : 94- 98: lifed Rkf--A--D igntv DCOP_USTMA : 267- 274: seqge Rykt-AgwD aylkr DCOP_YEAST : 92- 96: llfed Rkf--A--D igntv DCOP_YEAST : 111- 117: sagvy RiaewA--D itnah PYR5_BOVIN : 313- 317: lifed Rkf--A--D igntv PYR5_DICDI : 312- 316: lifed Rkf--A--D igntv PYR5_DROME : 319- 323: llmed Rkf--A--D igntv PYR5_DROME : 482- 489: qtyrd Rlwa-AyqD rvak PYR5_HUMAN : 313- 317: lifed Rkf--A--D igntv PYR5_HUMAN : 451- 458: iiivg RgiisAa-D rleaa PYR5_MOUSE : 98- 102: lifed Rkf--A--D igntv S 19: 10.2558 56( 32) G-R-x-[AILPV] Occurences: 56(32) DCOP_ASPNG : 237- 240: pasai GRgA dfiia DCOP_ASPNG : 246- 249: dfiia GRgI yaapd DCOP_BACCL : 213- 216: dyivv GRsL traad DCOP_BACSU : 214- 217: saivv GRsI tkaed DCOP_CANAL : 238- 241: diiiv GRgL fgkgr DCOP_CANAL : 245- 248: glfgk GRdP diegk DCOP_CANBO : 238- 241: diiiv GRgL fgkgr DCOP_CANBO : 245- 248: glfgk GRdP svege DCOP_CANGA : 234- 237: diiiv GRgL fakgr DCOP_CANGA : 241- 244: glfak GRdP ktege DCOP_CANMA : 235- 238: dviiv GRgL fgkgr DCOP_CANMA : 242- 245: glfgk GRdP evegk DCOP_CEPAC : 347- 350: diviv GRgI lkagd DCOP_ECOLI : 221- 224: dymvi GRpV tqsvd DCOP_EMENI : 235- 238: pgsav GRgA dfiia DCOP_EMENI : 244- 247: dfiia GRgI ykadd DCOP_HAEIN : 209- 212: dylvi GRpI tqadn DCOP_HANPO : 233- 236: dviiv GRgL fgkgr DCOP_HANPO : 240- 243: glfgk GRdP evegk DCOP_KLULA : 234- 237: diiiv GRgL fakgr DCOP_KLULA : 241- 244: glfak GRdP kvege DCOP_KLUMA : 234- 237: diiiv GRgL fakgr DCOP_KLUMA : 241- 244: glfak GRdP vvege DCOP_KLUMA : 264- 267: ylkrv GRsA DCOP_MYCBO : 143- 146: vaaah GRgV fvlaa DCOP_MYCBO : 167- 170: naaad GRsV aqlvv DCOP_MYXXA : 173- 176: srged GRtV aeala DCOP_MYXXA : 244- 247: krlfa GReA qvipt DCOP_NEUCR : 365- 368: diaiv GRgI itaad DCOP_PENCH : 238- 241: pqsav GRgA dfiis DCOP_PENCH : 247- 250: dfiis GRgI yaaad DCOP_PHYBL : 143- 146: vglpl GRgL lllae DCOP_PHYBL : 233- 236: dviiv GRgI ygkpd DCOP_RHINI : 141- 144: vglpl GRgL lllae DCOP_RHINI : 231- 234: dviiv GRgI ygqpd DCOP_RHIRA : 141- 144: vglpl GRgL lllae DCOP_RHIRA : 231- 234: diiiv GRgI ygnpd DCOP_SALTY : 221- 224: dymvi GRpV tqsvd DCOP_SCHCO : 143- 146: vgqpl GRgL lllae DCOP_SCHCO : 241- 244: dviiv GRgI ygkdp DCOP_SCHPO : 143- 146: vglpl GRgL lllae DCOP_SCHPO : 232- 235: diiiv GRgV ygagr DCOP_SCHPO : 239- 242: gvyga GRnP vveak DCOP_TRIRE : 351- 354: diaiv GRgI lkasd DCOP_USTMA : 55- 58: vceav GRnV clvkt DCOP_USTMA : 143- 146: vgqpl GRgL lllae DCOP_USTMA : 238- 241: dviiv GRgI ygtlt DCOP_YEAST : 234- 237: diiiv GRgL fakgr DCOP_YEAST : 241- 244: glfak GRdA kvege PYR5_BOVIN : 450- 453: diiiv GRgI iasan PYR5_DICDI : 189- 192: agklt GRtL elvqs PYR5_DICDI : 450- 453: dviiv GRgI yqsnd PYR5_DROME : 353- 356: ahtlp GRsI lqglk PYR5_DROME : 463- 466: digvv GRgI lkass PYR5_HUMAN : 450- 453: diiiv GRgI isaad PYR5_MOUSE : 235- 238: dviiv GRgI laaan T 20: 10.2458 48( 32) R-x(5)-A-x(2)-[EGQST] Occurences: 48(32) DCOP_ASPNG : 150- 159: sygpe RgllilAemT skgsl DCOP_BACCL : 92- 101: haagg RrmmeaAieG ldagt DCOP_BACCL : 184- 193: vtpgi RfaddaAhdQ vrvvt DCOP_BACSU : 185- 194: vtpgi RmsedaAndQ vrvat DCOP_CANAL : 149- 158: tnqep RgllmlAelS svgsl DCOP_CANBO : 149- 158: vtdep RgllmlAelS skgai DCOP_CANGA : 145- 154: ttnep RgllmlAelS skgsl DCOP_CANMA : 146- 155: ttkep RgllmlAelS skgsl DCOP_CEPAC : 227- 236: sahsp RltktiAeeG dmlla DCOP_CEPAC : 250- 259: eppln RgllilAqmS sagnf DCOP_CEPAC : 364- 373: eaery RsaawkAytE rvr DCOP_ECOLI : 192- 201: vtpgi RpqgseAgdQ rrimt DCOP_EMENI : 150- 159: kdanq RgllilAemT skgsl DCOP_HAEIN : 71- 80: pntva RavrsaAdlG vwmvd DCOP_HANPO : 144- 153: stdep RgllmlAelS skgsl DCOP_KLULA : 145- 154: vtkep RgllmlAelS skgsl DCOP_KLUMA : 145- 154: vtkep RgllmlAelS skgsl DCOP_MYCBO : 7- 16: tgfgl RlaeakArrG plclg DCOP_MYCBO : 144- 153: aaahg RgvfvlAatS npega DCOP_MYXXA : 279- 288: hlapa RafratArpS DCOP_NEUCR : 250- 259: eapld RgllilAqmS skgcl DCOP_PENCH : 153- 162: pygse RgllilAemT skgsl DCOP_PHYBL : 144- 153: glplg RgllllAemS skgal DCOP_PHYBL : 251- 260: qskry ReagwnAylE rvrmh DCOP_RHINI : 142- 151: glplg RgllllAemS skgal DCOP_RHINI : 249- 258: qaqry RqagwdAylE rlalh DCOP_RHIRA : 142- 151: glplg RgllllAemS skgal DCOP_RHIRA : 249- 258: qakry RqagwdAylE rvrlh DCOP_SALTY : 83- 92: pntta RavaaaAdlG vwmvn DCOP_SALTY : 192- 201: vtpgi RpagseAgdQ rrimt DCOP_SCHCO : 144- 153: gqplg RgllllAemS tkgsl DCOP_SCHCO : 186- 195: fiaqr RmdgigAppG vnved DCOP_SCHPO : 144- 153: glplg RgllllAemS skgsl DCOP_SCHPO : 250- 259: eakry ReagwkAyqQ rlsqh DCOP_TRIRE : 251- 260: eapls RgllilAqmS sqgnf DCOP_TRIRE : 368- 377: eaery RsaawkAytE rllr DCOP_USTMA : 144- 153: gqplg RgllllAemS segal DCOP_YEAST : 145- 154: vtkep RgllmlAelS ckgsl PYR5_BOVIN : 363- 372: glplh RacllvAemS sagtl PYR5_BOVIN : 467- 476: aakmy RkaaweAylS rlav PYR5_DICDI : 94- 103: ipmvv RrkeakAygT kqlie PYR5_DROME : 97- 106: tpmlv RrkeakAygT kklve PYR5_DROME : 248- 257: savak RlfnliAskQ tnlcl PYR5_DROME : 373- 382: gagke RgvfllAemS asgnl PYR5_HUMAN : 363- 372: glplh RgclliAemS stgsl PYR5_HUMAN : 467- 476: aaemy RkaaweAylS rlgv PYR5_MOUSE : 148- 157: glplh RaclliAemS sagsl PYR5_MOUSE : 252- 261: aaemy RkaaweAylS rlavq Number of patterns evaluated by Pratt:1352 Total running time: 4 seconds