------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file OKR_DC_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename OKR_DC_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ADI_ECOLI 755 DCLY_BACSU 490 DCLY_ECOLI 715 DCLY_HAFAL 739 DCOR_ECOLI 731 DCOR_HAEIN 720 DCOR_LACS3 730 DCOS_ECOLI 732 YAAO_BACSU 480 Pratt run started at Thu Feb 6 20:25:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 9( 9) R-N-x-H-K-S 2: 16.6802 9( 9) Y-P-P-G 3: 16.6802 9( 9) N-x-H-K-S 4: 16.6802 9( 9) P-G-H-x(2)-G 5: 16.1802 9( 9) S-x(2)-Y-x(3)-A-x(4,5)-A 6: 16.1802 10( 9) R-N-x-H-x(0,1)-S 7: 15.6802 9( 9) P-G-x(1,2)-P-x(3,4)-G 8: 15.6802 11( 9) S-x(2,3)-Y-x(3)-A-x(4,5)-A 9: 15.6802 11( 9) R-x(0,1)-N-x-H-x(0,1)-S 10: 15.1802 13( 9) G-x(2,3)-A-x(5)-Y-x(2,4)-G 11: 15.1802 9( 9) G-x-S-x(0,2)-T-x(2,3)-I 12: 15.1802 10( 9) D-x(0,1)-P-x-K-x(0,2)-L 13: 15.1802 11( 9) S-x(0,2)-Y-x(3)-A-x(4,5)-A 14: 15.1802 9( 9) A-x(5)-D-x(4,5)-V-x(1,3)-N 15: 14.6802 13( 9) F-x(1,3)-A-D-x(3,5)-V 16: 14.6802 9( 9) L-x(2)-I-x(2,4)-L-x(1,3)-P 17: 12.5102 9( 9) P-P-G 18: 12.5102 10( 9) E-x(4)-Y-P 19: 12.5102 10( 9) V-x(2)-L-G 20: 12.5102 11( 9) L-x-S-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 40.2025 9( 9) Y-P-P-G-[IV]-x(2)-[FILV]-x-[APS]-G-E-x(2)-[GST]-x(2)-[ANSV]-x(3)-[FILV] B 2: 36.0325 9( 9) P-P-G-[IV]-x(2)-[FILV]-x-[APS]-G-E-x(2)-[GST]-x(2)-[ANSV]-x(3)-[FILV] C 3: 32.2034 9( 9) G-x(2,3)-A-[ENT]-x-[AIV]-x(2)-Y-x(2,4)-G-[IV]-[ILP]-x(3)-[APS]-[DG] D 4: 26.3661 9( 9) S-[PT]-x-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] E 5: 23.4938 9( 9) R-N-[CNV]-H-K-S F 6: 22.6923 11( 9) S-x(2,3)-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] G 7: 22.1923 11( 9) S-x(0,2)-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] H 8: 20.8503 9( 9) R-N-x-H-K-S I 9: 19.6668 9( 9) E-x-[AGLV]-x(2)-Y-P-[DGP]-x(4)-[FIMV] J 10: 19.3237 9( 9) N-[CNV]-H-K-S K 11: 19.1073 9( 9) L-[DGNP]-[EPST]-I-x(2,4)-L-x(1,3)-P L 12: 18.8237 9( 9) R-N-[CNV]-H-x(0,1)-S M 13: 17.3857 9( 9) A-x(4)-[AGPV]-D-x(4,5)-V-x(1,3)-N N 14: 17.2889 11( 9) F-x(1,3)-A-D-x(3,5)-V-x(2)-[GTV] O 15: 16.6802 9( 9) P-G-H-x(2)-G P 16: 15.6802 9( 9) P-G-x(1,2)-P-x(3,4)-G Q 17: 15.1802 9( 9) G-x-S-x(0,2)-T-x(2,3)-I R 18: 15.1802 10( 9) D-x(0,1)-P-x-K-x(0,2)-L S 19: 14.7191 9( 9) V-x(2)-L-G-[DGST] T 20: 14.6802 13( 9) F-x(1,3)-A-D-x(3,5)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 40.2025 9( 9) Y-P-P-G-[IV]-x(2)-[FILV]-x-[APS]-G-E-x(2)-[GST]-x(2)-[ANSV]-x(3)-[FILV] Occurences: 9(9) ADI_ECOLI : 697- 718: nsvip YPPGIpmLlSGEnfGdkNspqV sylrs DCLY_BACSU : 438- 459: efvmv YPPGIpiFiPGEiiTeeNisyI fknld DCLY_ECOLI : 652- 673: nmilp YPPGVplVmPGEmiTeeSrpvL eflqm DCLY_HAFAL : 652- 673: nmilp YPPGVpvVmPGEmlTkeSrpvL sflqm DCOR_ECOLI : 672- 693: egalp YPPGVlcVvPGEvwGgaVqryF lalee DCOR_HAEIN : 659- 680: egalp YPPGVlcVvPGEkwSttAhqyF lalee DCOR_LACS3 : 660- 681: egalp YPPGVfcVaPGEkwSetAvkyF tilqd DCOS_ECOLI : 660- 681: egalp YPPGVlcVvPGEiwGgaVlryF salee YAAO_BACSU : 429- 450: ediip YPPGIpmImAGEriTkeSvqkL srlis B 2: 36.0325 9( 9) P-P-G-[IV]-x(2)-[FILV]-x-[APS]-G-E-x(2)-[GST]-x(2)-[ANSV]-x(3)-[FILV] Occurences: 9(9) ADI_ECOLI : 698- 718: svipy PPGIpmLlSGEnfGdkNspqV sylrs DCLY_BACSU : 439- 459: fvmvy PPGIpiFiPGEiiTeeNisyI fknld DCLY_ECOLI : 653- 673: milpy PPGVplVmPGEmiTeeSrpvL eflqm DCLY_HAFAL : 653- 673: milpy PPGVpvVmPGEmlTkeSrpvL sflqm DCOR_ECOLI : 673- 693: galpy PPGVlcVvPGEvwGgaVqryF lalee DCOR_HAEIN : 660- 680: galpy PPGVlcVvPGEkwSttAhqyF lalee DCOR_LACS3 : 661- 681: galpy PPGVfcVaPGEkwSetAvkyF tilqd DCOS_ECOLI : 661- 681: galpy PPGVlcVvPGEiwGgaVlryF salee YAAO_BACSU : 430- 450: diipy PPGIpmImAGEriTkeSvqkL srlis C 3: 32.2034 9( 9) G-x(2,3)-A-[ENT]-x-[AIV]-x(2)-Y-x(2,4)-G-[IV]-[ILP]-x(3)-[APS]-[DG] Occurences: 9(9) ADI_ECOLI : 687- 707: ienlp GriaANsVipYpp--GIPmllSG enfgd DCLY_BACSU : 428- 448: lkeas GriiAEfVmvYpp--GIPifiPG eiite DCLY_ECOLI : 642- 662: ldemv GrinANmIlpYpp--GVPlvmPG emite DCLY_HAFAL : 642- 662: lddml GkvsANmIlpYpp--GVPvvmPG emltk DCOR_ECOLI : 662- 682: irdae GriaAEgAlpYpp--GVLcvvPG evwgg DCOR_HAEIN : 649- 669: ltdiv GrvaAEgAlpYpp--GVLcvvPG ekwst DCOR_LACS3 : 514- 535: dyedf Gvp-ATiVanYlrdhGIIpekSD lnsil DCOS_ECOLI : 650- 670: lpdae GriaAEgAlpYpp--GVLcvvPG eiwgg YAAO_BACSU : 419- 439: feeaa GrlnAEdIipYpp--GIPmimAG eritk D 4: 26.3661 9( 9) S-[PT]-x-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] Occurences: 9(9) ADI_ECOLI : 422- 439: mhatt SPlYAIcAsndv-AvsmmD gnsgl DCLY_BACSU : 260- 277: mlttt STsYLLlAsldv-ArkrlA tegrq DCLY_ECOLI : 400- 418: mhttt SPhYGIvAstetaAammkG nagkr DCLY_HAFAL : 400- 418: mhtst SPhYGIvAstetaAammkG nagkr DCOR_ECOLI : 408- 426: lhast SPfYPLfAaldvnAkiheG esgrr DCOR_HAEIN : 395- 413: lhast SPfYPLfAtldvnAkiqgS eagrr DCOR_LACS3 : 396- 414: lfmst SPfYPMyAaldvnAamqeG eagrk DCOS_ECOLI : 396- 414: mhast SPfYPLfAalninAkmheG vsgrn YAAO_BACSU : 257- 274: rlqss SPsYPImAsldi-ArayvQ hiiee E 5: 23.4938 9( 9) R-N-[CNV]-H-K-S Occurences: 9(9) ADI_ECOLI : 252- 257: vvvvd RNCHKS ieqgl DCLY_BACSU : 112- 117: kiiip RNVHKS imtai DCLY_ECOLI : 242- 247: tilid RNCHKS lthlm DCLY_HAFAL : 242- 247: tilid RNCHKS lthlm DCOR_ECOLI : 233- 238: lvlfd RNNHKS nhhga DCOR_HAEIN : 220- 225: lvlfd RNNHKS nhhga DCOR_LACS3 : 220- 225: lvlfd RNNHKS vynsa DCOS_ECOLI : 221- 226: lvlfd RNNHKS nhhga YAAO_BACSU : 108- 113: tilvq RNCHKS vfhav F 6: 22.6923 11( 9) S-x(2,3)-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] Occurences: 11(9) ADI_ECOLI : 422- 439: mhatt Spl-YAIcAsndv-AvsmmD gnsgl DCLY_BACSU : 260- 277: mlttt Sts-YLLlAsldv-ArkrlA tegrq DCLY_ECOLI : 101- 119: lrlqi SffeYALgAaedi-AnkikQ ttdey DCLY_ECOLI : 400- 418: mhttt Sph-YGIvAstetaAammkG nagkr DCLY_HAFAL : 400- 418: mhtst Sph-YGIvAstetaAammkG nagkr DCOR_ECOLI : 408- 426: lhast Spf-YPLfAaldvnAkiheG esgrr DCOR_HAEIN : 395- 413: lhast Spf-YPLfAtldvnAkiqgS eagrr DCOR_LACS3 : 396- 414: lfmst Spf-YPMyAaldvnAamqeG eagrk DCOS_ECOLI : 396- 414: mhast Spf-YPLfAalninAkmheG vsgrn YAAO_BACSU : 256- 274: nrlqs SspsYPImAsldi-ArayvQ hiiee YAAO_BACSU : 257- 274: rlqss Sps-YPImAsldi-ArayvQ hiiee G 7: 22.1923 11( 9) S-x(0,2)-Y-[AGLP]-[ILM]-x-A-x(4,5)-A-x(4)-[ADGQS] Occurences: 11(9) ADI_ECOLI : 422- 439: mhatt SplYAIcAsndv-AvsmmD gnsgl DCLY_BACSU : 260- 277: mlttt StsYLLlAsldv-ArkrlA tegrq DCLY_BACSU : 262- 277: tttst S--YLLlAsldv-ArkrlA tegrq DCLY_ECOLI : 400- 418: mhttt SphYGIvAstetaAammkG nagkr DCLY_HAFAL : 400- 418: mhtst SphYGIvAstetaAammkG nagkr DCOR_ECOLI : 408- 426: lhast SpfYPLfAaldvnAkiheG esgrr DCOR_HAEIN : 395- 413: lhast SpfYPLfAtldvnAkiqgS eagrr DCOR_LACS3 : 396- 414: lfmst SpfYPMyAaldvnAamqeG eagrk DCOS_ECOLI : 396- 414: mhast SpfYPLfAalninAkmheG vsgrn YAAO_BACSU : 257- 274: rlqss SpsYPImAsldi-ArayvQ hiiee YAAO_BACSU : 259- 274: qsssp S--YPImAsldi-ArayvQ hiiee H 8: 20.8503 9( 9) R-N-x-H-K-S Occurences: 9(9) ADI_ECOLI : 252- 257: vvvvd RNcHKS ieqgl DCLY_BACSU : 112- 117: kiiip RNvHKS imtai DCLY_ECOLI : 242- 247: tilid RNcHKS lthlm DCLY_HAFAL : 242- 247: tilid RNcHKS lthlm DCOR_ECOLI : 233- 238: lvlfd RNnHKS nhhga DCOR_HAEIN : 220- 225: lvlfd RNnHKS nhhga DCOR_LACS3 : 220- 225: lvlfd RNnHKS vynsa DCOS_ECOLI : 221- 226: lvlfd RNnHKS nhhga YAAO_BACSU : 108- 113: tilvq RNcHKS vfhav I 9: 19.6668 9( 9) E-x-[AGLV]-x(2)-Y-P-[DGP]-x(4)-[FIMV] Occurences: 9(9) ADI_ECOLI : 617- 629: aqvmp ElVeqYPDtyanM gihdl DCLY_BACSU : 433- 445: griia EfVmvYPPgipiF ipgei DCLY_ECOLI : 681- 693: lqmlc EiGahYPGfetdI hgayr DCLY_HAFAL : 681- 693: lqmlc EiGahYPGfetdI hgvhr DCOR_ECOLI : 667- 679: griaa EgAlpYPPgvlcV vpgev DCOR_HAEIN : 654- 666: grvaa EgAlpYPPgvlcV vpgek DCOR_LACS3 : 655- 667: geial EgAlpYPPgvfcV apgek DCOS_ECOLI : 655- 667: griaa EgAlpYPPgvlcV vpgei YAAO_BACSU : 149- 161: lgtik EaLeaYPDakglV ltnpt J 10: 19.3237 9( 9) N-[CNV]-H-K-S Occurences: 9(9) ADI_ECOLI : 253- 257: vvvdr NCHKS ieqgl DCLY_BACSU : 113- 117: iiipr NVHKS imtai DCLY_ECOLI : 243- 247: ilidr NCHKS lthlm DCLY_HAFAL : 243- 247: ilidr NCHKS lthlm DCOR_ECOLI : 234- 238: vlfdr NNHKS nhhga DCOR_HAEIN : 221- 225: vlfdr NNHKS nhhga DCOR_LACS3 : 221- 225: vlfdr NNHKS vynsa DCOS_ECOLI : 222- 226: vlfdr NNHKS nhhga YAAO_BACSU : 109- 113: ilvqr NCHKS vfhav K 11: 19.1073 9( 9) L-[DGNP]-[EPST]-I-x(2,4)-L-x(1,3)-P Occurences: 9(9) ADI_ECOLI : 531- 541: dnwsm LDPIkvsiLa--P gmged DCLY_BACSU : 400- 410: qtevl LPEIpl--LamtP rdafy DCLY_ECOLI : 486- 496: nehmy LDPIkvtlLt--P gmekd DCLY_ECOLI : 486- 496: nehmy LDPIkvt-Llt-P gmekd DCLY_HAFAL : 486- 496: ndhmy LDPIkvtlLt--P glspn DCLY_HAFAL : 486- 496: ndhmy LDPIkvt-Llt-P glspn DCOR_ECOLI : 548- 557: pekcd LNSIlfl-Lt--P aeshe DCOR_ECOLI : 548- 557: pekcd LNSIlf--Llt-P aeshe DCOR_HAEIN : 535- 544: pekcd LNSIlfl-Lt--P aetit DCOR_HAEIN : 535- 544: pekcd LNSIlf--Llt-P aetit DCOR_LACS3 : 536- 545: peksd LNSIlf--Lmt-P aetpa DCOS_ECOLI : 536- 545: pekcd LNSIlfl-Lt--P aedma DCOS_ECOLI : 536- 545: pekcd LNSIlf--Llt-P aedma YAAO_BACSU : 144- 155: pthvp LGTIkea-LeayP dakgl L 12: 18.8237 9( 9) R-N-[CNV]-H-x(0,1)-S Occurences: 9(9) ADI_ECOLI : 252- 257: vvvvd RNCHkS ieqgl DCLY_BACSU : 112- 117: kiiip RNVHkS imtai DCLY_ECOLI : 242- 247: tilid RNCHkS lthlm DCLY_HAFAL : 242- 247: tilid RNCHkS lthlm DCOR_ECOLI : 233- 238: lvlfd RNNHkS nhhga DCOR_HAEIN : 220- 225: lvlfd RNNHkS nhhga DCOR_LACS3 : 220- 225: lvlfd RNNHkS vynsa DCOS_ECOLI : 221- 226: lvlfd RNNHkS nhhga YAAO_BACSU : 108- 113: tilvq RNCHkS vfhav M 13: 17.3857 9( 9) A-x(4)-[AGPV]-D-x(4,5)-V-x(1,3)-N Occurences: 9(9) ADI_ECOLI : 668- 684: vtpre AynaiVDnnvelVsieN lpgri DCLY_BACSU : 154- 168: esakr AltehPDakgllVi--N ptyfg DCLY_ECOLI : 205- 218: aeqyi ArvfnADrsym-Vt--N gtsta DCLY_HAFAL : 205- 218: aeeyi ArtfnADrsyi-Vt--N gtsta DCOR_ECOLI : 196- 209: aqkfa AkvfhADktyf-Vl--N gtsaa DCOR_HAEIN : 183- 196: aqkya AqvfnADktyf-Vl--N gtsss DCOR_LACS3 : 480- 494: gakwh AyegyGDnqyy-Vdp-N kfmlt DCOS_ECOLI : 184- 197: aqqha AkvfnADktyf-Vl--N gtsss YAAO_BACSU : 150- 164: gtike AleayPDakgl-Vlt-N ptyyg N 14: 17.2889 11( 9) F-x(1,3)-A-D-x(3,5)-V-x(2)-[GTV] Occurences: 11(9) ADI_ECOLI : 218- 229: yaarv Fg--ADrsws-VvvG tsgsn ADI_ECOLI : 218- 230: yaarv Fg--ADrswsvVvgT sgsnr DCLY_BACSU : 78- 90: laaea Fg--ADhtffsVqgT sgaim DCLY_ECOLI : 208- 219: yiarv Fn--ADrsym-VtnG tstan DCLY_HAFAL : 208- 219: yiart Fn--ADrsyi-VtnG tstan DCOR_ECOLI : 167- 179: fgenv Fr--ADmcnadVklG dllih DCOR_ECOLI : 199- 210: faakv Fh--ADktyf-VlnG tsaan DCOR_HAEIN : 186- 197: yaaqv Fn--ADktyf-VlnG tsssn DCOR_LACS3 : 154- 166: fgetv Fr--ADlcnadValG dllih DCOS_ECOLI : 155- 167: fgeal Fr--ADlcnadVamG dllih DCOS_ECOLI : 187- 198: haakv Fn--ADktyf-VlnG tsssn YAAO_BACSU : 342- 354: erani FtelADenq--VllV lplgg O 15: 16.6802 9( 9) P-G-H-x(2)-G Occurences: 9(9) ADI_ECOLI : 160- 165: yswaa PGHqgG vgftk DCLY_BACSU : 26- 31: vqfhi PGHkkG agmdp DCLY_ECOLI : 150- 155: ytfct PGHmgG tafqk DCLY_HAFAL : 150- 155: ytvct PGHmgG tafdk DCOR_ECOLI : 141- 146: stfac PGHqhG affkk DCOR_HAEIN : 128- 133: iafdc PGHqgG qyyrk DCOR_LACS3 : 128- 133: iqfdc PGHqgG qyyrk DCOS_ECOLI : 129- 134: safdc PGHqgG effrr YAAO_BACSU : 23- 28: hsfhv PGHhnG dvffd P 16: 15.6802 9( 9) P-G-x(1,2)-P-x(3,4)-G Occurences: 9(9) ADI_ECOLI : 699- 707: vipyp PGi-PmllsG enfgd DCLY_BACSU : 440- 448: vmvyp PGi-PifipG eiite DCLY_ECOLI : 654- 662: ilpyp PGv-PlvmpG emite DCLY_HAFAL : 654- 662: ilpyp PGv-PvvmpG emltk DCOR_ECOLI : 704- 712: gvnll PGfsPelq-G vyset DCOR_HAEIN : 691- 699: gintl PGfaPeiq-G vylqk DCOR_LACS3 : 692- 700: ginnf PGfaPeiq-G vyfkq DCOS_ECOLI : 692- 700: ginll PGfaPelq-G vyiee YAAO_BACSU : 431- 439: iipyp PGi-PmimaG eritk Q 17: 15.1802 9( 9) G-x-S-x(0,2)-T-x(2,3)-I Occurences: 9(9) ADI_ECOLI : 443- 451: mdgns GlSl-TqevI deavd DCLY_BACSU : 228- 236: svhkl GgSl-TqssI lnmre DCLY_ECOLI : 219- 226: ymvtn GtS--TankI vgmys DCLY_HAFAL : 219- 226: yivtn GtS--TankI vgmys DCOR_ECOLI : 371- 378: hkqqa GfSq-Tsq-I hkkdn DCOR_HAEIN : 358- 365: hkqqa GfSq-Tsq-I hkkdk DCOR_LACS3 : 359- 366: hkqqa GfSq-Tsq-I hkkds DCOS_ECOLI : 359- 366: hkqqa GfSq-Tsq-I hkkds YAAO_BACSU : 326- 335: irskr GhSgyTlqsI leran R 18: 15.1802 10( 9) D-x(0,1)-P-x-K-x(0,2)-L Occurences: 10(9) ADI_ECOLI : 497- 502: tydfa DaPtK--L lttvq ADI_ECOLI : 497- 503: tydfa DaPtKl-L ttvqd DCLY_BACSU : 321- 325: aaysy D-PtK--L iisvk DCLY_ECOLI : 487- 493: ehmyl D-PiKvtL ltpgm DCLY_HAFAL : 487- 493: dhmyl D-PiKvtL ltpgl DCOR_ECOLI : 504- 508: dqyfv D-PcK--L llttp DCOR_ECOLI : 504- 509: dqyfv D-PcKl-L lttpg DCOR_ECOLI : 504- 510: dqyfv D-PcKllL ttpgi DCOR_HAEIN : 491- 496: eqyfv D-PcKf-L lttpg DCOR_HAEIN : 491- 497: eqyfv D-PcKflL ttpgi DCOR_LACS3 : 492- 498: nqyyv D-PnKfmL ttpgi DCOR_LACS3 : 569- 576: rliee DaPlKqvL psiya DCOS_ECOLI : 492- 496: nqyfv D-PcK--L llttp DCOS_ECOLI : 492- 497: nqyfv D-PcKl-L lttpg DCOS_ECOLI : 492- 498: nqyfv D-PcKllL ttpgi YAAO_BACSU : 315- 319: pliit D-PlK--L tirsk S 19: 14.7191 9( 9) V-x(2)-L-G-[DGST] Occurences: 9(9) ADI_ECOLI : 88- 93: qqnvp VflLGD rekal DCLY_BACSU : 224- 229: iaats VhkLGG sltqs DCLY_ECOLI : 184- 189: disis VseLGS lldhs DCLY_HAFAL : 184- 189: disis VseLGS lldhs DCOR_ECOLI : 42- 47: sshrr VvaLGD tdftd DCOR_HAEIN : 286- 291: pfrla ViqLGT ydgti DCOR_LACS3 : 286- 291: pfrla ViqLGT ydgti DCOS_ECOLI : 287- 292: pfrla ViqLGT ydgti YAAO_BACSU : 354- 359: nqvll VlpLGG krrin T 20: 14.6802 13( 9) F-x(1,3)-A-D-x(3,5)-V Occurences: 13(9) ADI_ECOLI : 218- 226: yaarv Fg--ADrsws-V vvgts ADI_ECOLI : 218- 227: yaarv Fg--ADrswsvV vgtsg DCLY_BACSU : 78- 87: laaea Fg--ADhtffsV qgtsg DCLY_BACSU : 172- 182: inpty FgvaADlksi-V elahs DCLY_ECOLI : 208- 216: yiarv Fn--ADrsym-V tngts DCLY_HAFAL : 208- 216: yiart Fn--ADrsyi-V tngts DCOR_ECOLI : 167- 176: fgenv Fr--ADmcnadV klgdl DCOR_ECOLI : 199- 207: faakv Fh--ADktyf-V lngts DCOR_HAEIN : 186- 194: yaaqv Fn--ADktyf-V lngts DCOR_HAEIN : 480- 490: dtwhk FegyADeqyf-V dpckf DCOR_LACS3 : 154- 163: fgetv Fr--ADlcnadV algdl DCOS_ECOLI : 155- 164: fgeal Fr--ADlcnadV amgdl DCOS_ECOLI : 187- 195: haakv Fn--ADktyf-V lngts YAAO_BACSU : 342- 351: erani FtelADenq--V llvlp Number of patterns evaluated by Pratt:17406 Total running time: 19 seconds