------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file NUSG PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NUSG.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NUSG_BACSU 177 NUSG_CGDAB 70 NUSG_ECOLI 181 NUSG_HAEIN 185 NUSG_STACA 182 NUSG_STRCO 300 NUSG_STRGR 294 NUSG_STRVG 319 NUSG_SYNY3 205 NUSG_THEMA 353 NUSG_THETH 184 Pratt run started at Thu Feb 6 20:25:35 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 11( 11) F-G-R-x-T-P-V 2: 20.8503 11( 11) G-R-x-T-P-V 3: 16.6802 11( 11) R-x-T-P-V 4: 15.6802 12( 11) V-x(2,4)-R-x(3)-V-E 5: 15.6802 19( 11) V-x(2,4)-G-P-F 6: 15.6802 16( 11) E-x(4,5)-V-x-V-x(2,3)-G 7: 15.1802 13( 11) V-x(0,2)-E-x(4,5)-Q-x(2)-K 8: 15.1802 18( 11) V-x(0,1)-V-x(2,4)-G-x(4)-V 9: 15.1802 15( 11) V-x(1,3)-V-x(2,3)-G-x(4)-V 10: 14.6802 11( 11) P-x(0,2)-V-x(0,2)-E-L 11: 14.6802 15( 11) V-x(2,4)-G-x(4)-V-x(1,3)-L 12: 12.5102 12( 11) V-E-L 13: 12.5102 11( 11) T-P-V 14: 12.5102 11( 11) G-P-F 15: 12.5102 12( 11) V-x-V-x(2)-G 16: 12.0102 12( 11) E-x(4,5)-Q-x(2)-K 17: 12.0102 14( 11) V-x(2,3)-G-x(4)-V 18: 12.0102 13( 11) V-x(0,1)-V-x(2)-G 19: 12.0102 13( 11) V-E-x(2,3)-F 20: 12.0102 19( 11) V-x-V-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 91.6553 19( 11) V-x(2,4)-G-P-F-x-[DNST]-x(2)-[AG]-x-[IV]-x-[EN]-[IV]-[DENS]-x-[DE]-x(2)-[EKR]-[LV]-x-[AGV]-x-[LV]-x-[IM]-F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K B 2: 88.4852 11( 11) G-P-F-x-[DNST]-x(2)-[AG]-x-[IV]-x-[EN]-[IV]-[DENS]-x-[DE]-x(2)-[EKR]-[LV]-x-[AGV]-x-[LV]-x-[IM]-F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K C 3: 40.6851 11( 11) F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K D 4: 36.5151 11( 11) G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K E 5: 32.3450 11( 11) R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K F 6: 28.1750 11( 11) T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K G 7: 21.6917 15( 11) V-x-V-x(2,3)-G-x(4)-[FLV]-x-[AGLV]-x-[FILV]-x-[ENQ] H 8: 21.5624 14( 11) V-x(1,3)-V-x(2,3)-G-x(4)-V-[EK]-x(4)-[QR] I 9: 18.3923 12( 11) V-x(2,3)-G-x(4)-V-[EK]-x(4)-[QR] J 10: 17.9367 14( 11) E-x(4,5)-V-x-V-x(2,3)-G-x(4)-[FILV] K 11: 15.6802 12( 11) V-x(2,4)-R-x(3)-V-E L 12: 15.1802 13( 11) V-x(0,2)-E-x(4,5)-Q-x(2)-K M 13: 15.1802 18( 11) V-x(0,1)-V-x(2,4)-G-x(4)-V N 14: 14.6802 11( 11) P-x(0,2)-V-x(0,2)-E-L O 15: 14.6802 15( 11) V-x(2,4)-G-x(4)-V-x(1,3)-L P 16: 14.6787 12( 11) V-E-x(2,3)-F-x(2)-[GIV] Q 17: 12.5102 12( 11) V-E-L R 18: 12.5102 12( 11) V-x-V-x(2)-G S 19: 12.0102 12( 11) E-x(4,5)-Q-x(2)-K T 20: 12.0102 14( 11) V-x(2,3)-G-x(4)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 91.6553 19( 11) V-x(2,4)-G-P-F-x-[DNST]-x(2)-[AG]-x-[IV]-x-[EN]-[IV]-[DENS]-x-[DE]-x(2)-[EKR]-[LV]-x-[AGV]-x-[LV]-x-[IM]-F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 19(11) NUSG_BACSU : 130- 176: elket VkvidGPFaNftGsIeEIDyDksKVkVfVnMFGReTPVeLefTQIdK l NUSG_BACSU : 132- 176: ketvk Vid--GPFaNftGsIeEIDyDksKVkVfVnMFGReTPVeLefTQIdK l NUSG_CGDAB : 22- 68: evger VcvsdGPFaSfnGiVkNVDeEksRVhVeVvIFGRvTPVeLayNQVeK iv NUSG_CGDAB : 24- 68: gervc Vsd--GPFaSfnGiVkNVDeEksRVhVeVvIFGRvTPVeLayNQVeK iv NUSG_ECOLI : 134- 180: epgem VrvndGPFaDfnGvVeEVDyEksRLkVsVsIFGRaTPVeLdfSQVeK a NUSG_ECOLI : 136- 180: gemvr Vnd--GPFaDfnGvVeEVDyEksRLkVsVsIFGRaTPVeLdfSQVeK a NUSG_HAEIN : 137- 183: hpgee VrvteGPFaDfnGtVeEVDyEkgRLkVsVsMFGRaTPVeLefGQVeK ih NUSG_HAEIN : 139- 183: geevr Vte--GPFaDfnGtVeEVDyEkgRLkVsVsMFGRaTPVeLefGQVeK ih NUSG_STACA : 135- 181: evgeq VriksGPFaNqvGeVqEIEaDkfKLtVlVdMFGReTPVeVefDQIeK l NUSG_STRCO : 253- 299: evgds VtvtdGPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRCO : 255- 299: gdsvt Vtd--GPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRGR : 247- 293: evgds VtvtdGPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRGR : 249- 293: gdsvt Vtd--GPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRVG : 272- 318: evgds VtvtdGPFaTlqAtInEINpDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRVG : 274- 318: gdsvt Vtd--GPFaTlqAtInEINpDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_SYNY3 : 159- 203: gdhim Vls--GPFkDfeGdViEVSpErsKLkAlLsIFGReTPVeLefTQVeK qn NUSG_THEMA : 305- 351: kvgdm VkiisGPFeDfaGvIkEIDpErqELkVnVtIFGReTPVvLhvSEVeK ie NUSG_THETH : 137- 183: regdq VrvvsGPFaDftGtVtEINpErgKVkVmVtIFGReTPVeLdfSQVvK a NUSG_THETH : 139- 183: gdqvr Vvs--GPFaDftGtVtEINpErgKVkVmVtIFGReTPVeLdfSQVvK a B 2: 88.4852 11( 11) G-P-F-x-[DNST]-x(2)-[AG]-x-[IV]-x-[EN]-[IV]-[DENS]-x-[DE]-x(2)-[EKR]-[LV]-x-[AGV]-x-[LV]-x-[IM]-F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 11(11) NUSG_BACSU : 135- 176: vkvid GPFaNftGsIeEIDyDksKVkVfVnMFGReTPVeLefTQIdK l NUSG_CGDAB : 27- 68: vcvsd GPFaSfnGiVkNVDeEksRVhVeVvIFGRvTPVeLayNQVeK iv NUSG_ECOLI : 139- 180: vrvnd GPFaDfnGvVeEVDyEksRLkVsVsIFGRaTPVeLdfSQVeK a NUSG_HAEIN : 142- 183: vrvte GPFaDfnGtVeEVDyEkgRLkVsVsMFGRaTPVeLefGQVeK ih NUSG_STACA : 140- 181: vriks GPFaNqvGeVqEIEaDkfKLtVlVdMFGReTPVeVefDQIeK l NUSG_STRCO : 258- 299: vtvtd GPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRGR : 252- 293: vtvtd GPFaTlqAtInEINaDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_STRVG : 277- 318: vtvtd GPFaTlqAtInEINpDskKVkGlVeIFGReTPVeLsfDQIqK n NUSG_SYNY3 : 162- 203: imvls GPFkDfeGdViEVSpErsKLkAlLsIFGReTPVeLefTQVeK qn NUSG_THEMA : 310- 351: vkiis GPFeDfaGvIkEIDpErqELkVnVtIFGReTPVvLhvSEVeK ie NUSG_THETH : 142- 183: vrvvs GPFaDftGtVtEINpErgKVkVmVtIFGReTPVeLdfSQVvK a C 3: 40.6851 11( 11) F-G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 11(11) NUSG_BACSU : 161- 176: vfvnm FGReTPVeLefTQIdK l NUSG_CGDAB : 53- 68: vevvi FGRvTPVeLayNQVeK iv NUSG_ECOLI : 165- 180: vsvsi FGRaTPVeLdfSQVeK a NUSG_HAEIN : 168- 183: vsvsm FGRaTPVeLefGQVeK ih NUSG_STACA : 166- 181: vlvdm FGReTPVeVefDQIeK l NUSG_STRCO : 284- 299: glvei FGReTPVeLsfDQIqK n NUSG_STRGR : 278- 293: glvei FGReTPVeLsfDQIqK n NUSG_STRVG : 303- 318: glvei FGReTPVeLsfDQIqK n NUSG_SYNY3 : 188- 203: allsi FGReTPVeLefTQVeK qn NUSG_THEMA : 336- 351: vnvti FGReTPVvLhvSEVeK ie NUSG_THETH : 168- 183: vmvti FGReTPVeLdfSQVvK a D 4: 36.5151 11( 11) G-R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 11(11) NUSG_BACSU : 162- 176: fvnmf GReTPVeLefTQIdK l NUSG_CGDAB : 54- 68: evvif GRvTPVeLayNQVeK iv NUSG_ECOLI : 166- 180: svsif GRaTPVeLdfSQVeK a NUSG_HAEIN : 169- 183: svsmf GRaTPVeLefGQVeK ih NUSG_STACA : 167- 181: lvdmf GReTPVeVefDQIeK l NUSG_STRCO : 285- 299: lveif GReTPVeLsfDQIqK n NUSG_STRGR : 279- 293: lveif GReTPVeLsfDQIqK n NUSG_STRVG : 304- 318: lveif GReTPVeLsfDQIqK n NUSG_SYNY3 : 189- 203: llsif GReTPVeLefTQVeK qn NUSG_THEMA : 337- 351: nvtif GReTPVvLhvSEVeK ie NUSG_THETH : 169- 183: mvtif GReTPVeLdfSQVvK a E 5: 32.3450 11( 11) R-x-T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 11(11) NUSG_BACSU : 163- 176: vnmfg ReTPVeLefTQIdK l NUSG_CGDAB : 55- 68: vvifg RvTPVeLayNQVeK iv NUSG_ECOLI : 167- 180: vsifg RaTPVeLdfSQVeK a NUSG_HAEIN : 170- 183: vsmfg RaTPVeLefGQVeK ih NUSG_STACA : 168- 181: vdmfg ReTPVeVefDQIeK l NUSG_STRCO : 286- 299: veifg ReTPVeLsfDQIqK n NUSG_STRGR : 280- 293: veifg ReTPVeLsfDQIqK n NUSG_STRVG : 305- 318: veifg ReTPVeLsfDQIqK n NUSG_SYNY3 : 190- 203: lsifg ReTPVeLefTQVeK qn NUSG_THEMA : 338- 351: vtifg ReTPVvLhvSEVeK ie NUSG_THETH : 170- 183: vtifg ReTPVeLdfSQVvK a F 6: 28.1750 11( 11) T-P-V-x-[LV]-x(2)-[DGNST]-[EQ]-[IV]-x-K Occurences: 11(11) NUSG_BACSU : 165- 176: mfgre TPVeLefTQIdK l NUSG_CGDAB : 57- 68: ifgrv TPVeLayNQVeK iv NUSG_ECOLI : 169- 180: ifgra TPVeLdfSQVeK a NUSG_HAEIN : 172- 183: mfgra TPVeLefGQVeK ih NUSG_STACA : 170- 181: mfgre TPVeVefDQIeK l NUSG_STRCO : 288- 299: ifgre TPVeLsfDQIqK n NUSG_STRGR : 282- 293: ifgre TPVeLsfDQIqK n NUSG_STRVG : 307- 318: ifgre TPVeLsfDQIqK n NUSG_SYNY3 : 192- 203: ifgre TPVeLefTQVeK qn NUSG_THEMA : 340- 351: ifgre TPVvLhvSEVeK ie NUSG_THETH : 172- 183: ifgre TPVeLdfSQVvK a G 7: 21.6917 15( 11) V-x-V-x(2,3)-G-x(4)-[FLV]-x-[AGLV]-x-[FILV]-x-[ENQ] Occurences: 15(11) NUSG_BACSU : 130- 146: elket VkVid-GpfanFtGsIeE idydk NUSG_BACSU : 156- 173: kskvk VfVnmfGretpVeLeFtQ idkl NUSG_CGDAB : 22- 38: evger VcVsd-GpfasFnGiVkN vdeek NUSG_ECOLI : 134- 150: epgem VrVnd-GpfadFnGvVeE vdyek NUSG_ECOLI : 160- 177: ksrlk VsVsifGratpVeLdFsQ veka NUSG_HAEIN : 137- 153: hpgee VrVte-GpfadFnGtVeE vdyek NUSG_HAEIN : 163- 180: kgrlk VsVsmfGratpVeLeFgQ vekih NUSG_STACA : 161- 178: kfklt VlVdmfGretpVeVeFdQ iekl NUSG_STRCO : 253- 269: evgds VtVtd-GpfatLqAtInE inads NUSG_STRGR : 247- 263: evgds VtVtd-GpfatLqAtInE inads NUSG_STRVG : 272- 288: evgds VtVtd-GpfatLqAtInE inpds NUSG_SYNY3 : 26- 42: ghwfa VqVas-GcekrVkLnLeQ rihtl NUSG_THEMA : 331- 348: rqelk VnVtifGretpVvLhVsE vekie NUSG_THETH : 137- 153: regdq VrVvs-GpfadFtGtVtE inper NUSG_THETH : 163- 180: rgkvk VmVtifGretpVeLdFsQ vvka H 8: 21.5624 14( 11) V-x(1,3)-V-x(2,3)-G-x(4)-V-[EK]-x(4)-[QR] Occurences: 14(11) NUSG_BACSU : 154- 173: ydksk VkvfVnmfGretpVEleftQ idkl NUSG_BACSU : 156- 173: kskvk Vf--VnmfGretpVEleftQ idkl NUSG_CGDAB : 46- 65: eeksr VhveVvifGrvtpVElaynQ vekiv NUSG_CGDAB : 48- 65: ksrvh Vev-Vif-GrvtpVElaynQ vekiv NUSG_CGDAB : 48- 65: ksrvh Ve--VvifGrvtpVElaynQ vekiv NUSG_ECOLI : 160- 177: ksrlk Vs--VsifGratpVEldfsQ veka NUSG_HAEIN : 163- 180: kgrlk Vs--VsmfGratpVElefgQ vekih NUSG_STACA : 161- 178: kfklt Vl--VdmfGretpVEvefdQ iekl NUSG_STRCO : 277- 296: adskk VkglVeifGretpVElsfdQ iqkn NUSG_STRGR : 271- 290: adskk VkglVeifGretpVElsfdQ iqkn NUSG_STRVG : 296- 315: pdskk VkglVeifGretpVElsfdQ iqkn NUSG_SYNY3 : 26- 42: ghwfa Vq--Vas-GcekrVKlnleQ rihtl NUSG_THEMA : 256- 275: rsvpy VmgfVssgGqpvpVKdremR pilrl NUSG_THETH : 161- 180: pergk VkvmVtifGretpVEldfsQ vvka NUSG_THETH : 163- 180: rgkvk Vm--VtifGretpVEldfsQ vvka I 9: 18.3923 12( 11) V-x(2,3)-G-x(4)-V-[EK]-x(4)-[QR] Occurences: 12(11) NUSG_BACSU : 158- 173: kvkvf VnmfGretpVEleftQ idkl NUSG_CGDAB : 50- 65: rvhve VvifGrvtpVElaynQ vekiv NUSG_CGDAB : 51- 65: vhvev Vif-GrvtpVElaynQ vekiv NUSG_ECOLI : 162- 177: rlkvs VsifGratpVEldfsQ veka NUSG_HAEIN : 165- 180: rlkvs VsmfGratpVElefgQ vekih NUSG_STACA : 163- 178: kltvl VdmfGretpVEvefdQ iekl NUSG_STRCO : 281- 296: kvkgl VeifGretpVElsfdQ iqkn NUSG_STRGR : 275- 290: kvkgl VeifGretpVElsfdQ iqkn NUSG_STRVG : 300- 315: kvkgl VeifGretpVElsfdQ iqkn NUSG_SYNY3 : 28- 42: wfavq Vas-GcekrVKlnleQ rihtl NUSG_THEMA : 260- 275: yvmgf VssgGqpvpVKdremR pilrl NUSG_THETH : 165- 180: kvkvm VtifGretpVEldfsQ vvka J 10: 17.9367 14( 11) E-x(4,5)-V-x-V-x(2,3)-G-x(4)-[FILV] Occurences: 14(11) NUSG_BACSU : 125- 140: tdidf Elket-VkVid-GpfanF tgsie NUSG_CGDAB : 17- 32: ssvff Evger-VcVsd-GpfasF ngivk NUSG_CGDAB : 42- 59: knvde EksrvhVeVvifGrvtpV elayn NUSG_ECOLI : 129- 144: pktlf Epgem-VrVnd-GpfadF ngvve NUSG_ECOLI : 154- 171: eevdy EksrlkVsVsifGratpV eldfs NUSG_HAEIN : 157- 174: eevdy EkgrlkVsVsmfGratpV elefg NUSG_STACA : 122- 137: qmgmk Ektid-VeVev-GeqvrI ksgpf NUSG_STRCO : 100- 116: eldpi EklrpgVrVlp-GewyvI htyag NUSG_STRCO : 248- 263: qvldf Evgds-VtVtd-GpfatL qatin NUSG_STRGR : 242- 257: qvldf Evgds-VtVtd-GpfatL qatin NUSG_STRVG : 267- 282: evldf Evgds-VtVtd-GpfatL qatin NUSG_SYNY3 : 20- 36: kktps EghwfaVqVas-GcekrV klnle NUSG_THEMA : 325- 342: keidp ErqelkVnVtifGretpV vlhvs NUSG_THETH : 157- 174: teinp ErgkvkVmVtifGretpV eldfs K 11: 15.6802 12( 11) V-x(2,4)-R-x(3)-V-E Occurences: 12(11) NUSG_BACSU : 158- 168: kvkvf VnmfgRetpVE leftq NUSG_CGDAB : 50- 60: rvhve VvifgRvtpVE laynq NUSG_CGDAB : 51- 60: vhvev Vifg-RvtpVE laynq NUSG_ECOLI : 162- 172: rlkvs VsifgRatpVE ldfsq NUSG_HAEIN : 165- 175: rlkvs VsmfgRatpVE lefgq NUSG_STACA : 163- 173: kltvl VdmfgRetpVE vefdq NUSG_STRCO : 281- 291: kvkgl VeifgRetpVE lsfdq NUSG_STRGR : 275- 285: kvkgl VeifgRetpVE lsfdq NUSG_STRVG : 300- 310: kvkgl VeifgRetpVE lsfdq NUSG_SYNY3 : 49- 57: ihtld Vad--RilqVE ipktp NUSG_THEMA : 94- 103: gvivd Vknv-RkivVE tidrk NUSG_THETH : 165- 175: kvkvm VtifgRetpVE ldfsq L 12: 15.1802 13( 11) V-x(0,2)-E-x(4,5)-Q-x(2)-K Occurences: 13(11) NUSG_BACSU : 167- 176: gretp V--Eleft-QidK l NUSG_CGDAB : 59- 68: grvtp V--Elayn-QveK iv NUSG_ECOLI : 49- 59: vptee Vv-Eirgg-QrrK serkf NUSG_ECOLI : 50- 59: pteev V--Eirgg-QrrK serkf NUSG_ECOLI : 171- 180: gratp V--Eldfs-QveK a NUSG_HAEIN : 174- 183: gratp V--Elefg-QveK ih NUSG_STACA : 172- 181: gretp V--Evefd-QieK l NUSG_STRCO : 290- 299: gretp V--Elsfd-QiqK n NUSG_STRGR : 284- 293: gretp V--Elsfd-QiqK n NUSG_STRVG : 309- 318: gretp V--Elsfd-QiqK n NUSG_SYNY3 : 194- 203: gretp V--Eleft-QveK qn NUSG_THEMA : 318- 330: edfag VikEidperQelK vnvti NUSG_THETH : 174- 183: gretp V--Eldfs-QvvK a M 13: 15.1802 18( 11) V-x(0,1)-V-x(2,4)-G-x(4)-V Occurences: 18(11) NUSG_BACSU : 7- 18: eknwy V-VhtysGyenkV kanle NUSG_BACSU : 78- 89: ddswy V-VrntpGvtgfV gsags NUSG_BACSU : 156- 167: kskvk VfVnmf-GretpV eleft NUSG_CGDAB : 48- 59: ksrvh VeVvif-GrvtpV elayn NUSG_CGDAB : 50- 59: rvhve V-Vif--GrvtpV elayn NUSG_ECOLI : 11- 22: kkrwy V-VqafsGfegrV atslr NUSG_ECOLI : 160- 171: ksrlk VsVsif-GratpV eldfs NUSG_HAEIN : 163- 174: kgrlk VsVsmf-GratpV elefg NUSG_STACA : 83- 94: deswy V-VrntpGvtgfV gsaga NUSG_STACA : 161- 172: kfklt VlVdmf-GretpV evefd NUSG_STRCO : 186- 197: neswg V-VrntpGvtgfV gnayd NUSG_STRGR : 180- 191: neswg V-VrntpGvtgfV gnayd NUSG_STRVG : 205- 216: neswg V-VrntpGvtgfV gnayd NUSG_SYNY3 : 26- 36: ghwfa VqVas--GcekrV klnle NUSG_THEMA : 331- 342: rqelk VnVtif-GretpV vlhvs NUSG_THETH : 45- 56: iptee V-VelreGgkkeV vrkkl NUSG_THETH : 84- 95: neawe V-VrgtpGitgfV gagmr NUSG_THETH : 163- 174: rgkvk VmVtif-GretpV eldfs N 14: 14.6802 11( 11) P-x(0,2)-V-x(0,2)-E-L Occurences: 11(11) NUSG_BACSU : 166- 169: fgret P--V--EL eftqi NUSG_CGDAB : 58- 61: fgrvt P--V--EL aynqv NUSG_ECOLI : 170- 173: fgrat P--V--EL dfsqv NUSG_HAEIN : 173- 176: fgrat P--V--EL efgqv NUSG_STACA : 67- 74: tkktf PgyVlvEL vmtde NUSG_STRCO : 289- 292: fgret P--V--EL sfdqi NUSG_STRGR : 283- 286: fgret P--V--EL sfdqi NUSG_STRVG : 308- 311: fgret P--V--EL sfdqi NUSG_SYNY3 : 193- 196: fgret P--V--EL eftqv NUSG_THEMA : 292- 297: eekkk PvkV--EL gfkvg NUSG_THEMA : 292- 297: eekkk P--VkvEL gfkvg NUSG_THETH : 173- 176: fgret P--V--EL dfsqv O 15: 14.6802 15( 11) V-x(2,4)-G-x(4)-V-x(1,3)-L Occurences: 15(11) NUSG_BACSU : 8- 22: knwyv VhtysGyenkVkanL ekrve NUSG_BACSU : 158- 169: kvkvf Vnmf-GretpVe--L eftqi NUSG_CGDAB : 50- 61: rvhve Vvif-GrvtpVe--L aynqv NUSG_CGDAB : 51- 61: vhvev Vif--GrvtpVe--L aynqv NUSG_ECOLI : 12- 26: krwyv VqafsGfegrVatsL rehik NUSG_ECOLI : 162- 173: rlkvs Vsif-GratpVe--L dfsqv NUSG_HAEIN : 165- 176: rlkvs Vsmf-GratpVe--L efgqv NUSG_STACA : 13- 27: krwya VhtysGyenkVkknL ekrve NUSG_STRCO : 281- 292: kvkgl Veif-GretpVe--L sfdqi NUSG_STRGR : 275- 286: kvkgl Veif-GretpVe--L sfdqi NUSG_STRVG : 300- 311: kvkgl Veif-GretpVe--L sfdqi NUSG_SYNY3 : 26- 38: ghwfa VqvasGcekrVk--L nleqr NUSG_SYNY3 : 26- 40: ghwfa VqvasGcekrVklnL eqrih NUSG_SYNY3 : 28- 38: wfavq Vas--GcekrVk--L nleqr NUSG_SYNY3 : 28- 40: wfavq Vas--GcekrVklnL eqrih NUSG_THEMA : 333- 344: elkvn Vtif-GretpVv--L hvsev NUSG_THETH : 165- 176: kvkvm Vtif-GretpVe--L dfsqv P 16: 14.6787 12( 11) V-E-x(2,3)-F-x(2)-[GIV] Occurences: 12(11) NUSG_BACSU : 167- 174: gretp VEle-FtqI dkl NUSG_CGDAB : 48- 56: ksrvh VEvviFgrV tpvel NUSG_ECOLI : 171- 178: gratp VEld-FsqV eka NUSG_HAEIN : 174- 181: gratp VEle-FgqV ekih NUSG_STACA : 172- 179: gretp VEve-FdqI ekl NUSG_STRCO : 290- 297: gretp VEls-FdqI qkn NUSG_STRGR : 284- 291: gretp VEls-FdqI qkn NUSG_STRVG : 309- 316: gretp VEls-FdqI qkn NUSG_SYNY3 : 133- 140: lshge VEri-FrhV deqep NUSG_SYNY3 : 194- 201: gretp VEle-FtqV ekqn NUSG_THEMA : 295- 302: kkpvk VElg-FkvG dmvki NUSG_THETH : 174- 181: gretp VEld-FsqV vka Q 17: 12.5102 12( 11) V-E-L Occurences: 12(11) NUSG_BACSU : 167- 169: gretp VEL eftqi NUSG_CGDAB : 59- 61: grvtp VEL aynqv NUSG_ECOLI : 171- 173: gratp VEL dfsqv NUSG_HAEIN : 174- 176: gratp VEL efgqv NUSG_STACA : 72- 74: pgyvl VEL vmtde NUSG_STRCO : 290- 292: gretp VEL sfdqi NUSG_STRGR : 284- 286: gretp VEL sfdqi NUSG_STRVG : 309- 311: gretp VEL sfdqi NUSG_SYNY3 : 194- 196: gretp VEL eftqv NUSG_THEMA : 295- 297: kkpvk VEL gfkvg NUSG_THETH : 46- 48: pteev VEL reggk NUSG_THETH : 174- 176: gretp VEL dfsqv R 18: 12.5102 12( 11) V-x-V-x(2)-G Occurences: 12(11) NUSG_BACSU : 130- 135: elket VkVidG pfanf NUSG_CGDAB : 22- 27: evger VcVsdG pfasf NUSG_ECOLI : 134- 139: epgem VrVndG pfadf NUSG_HAEIN : 137- 142: hpgee VrVteG pfadf NUSG_STACA : 127- 132: ektid VeVevG eqvri NUSG_STRCO : 106- 111: klrpg VrVlpG ewyvi NUSG_STRCO : 253- 258: evgds VtVtdG pfatl NUSG_STRGR : 247- 252: evgds VtVtdG pfatl NUSG_STRVG : 272- 277: evgds VtVtdG pfatl NUSG_SYNY3 : 26- 31: ghwfa VqVasG cekrv NUSG_THEMA : 293- 298: ekkkp VkVelG fkvgd NUSG_THETH : 137- 142: regdq VrVvsG pfadf S 19: 12.0102 12( 11) E-x(4,5)-Q-x(2)-K Occurences: 12(11) NUSG_BACSU : 168- 176: retpv Eleft-QidK l NUSG_CGDAB : 60- 68: rvtpv Elayn-QveK iv NUSG_ECOLI : 51- 59: teevv Eirgg-QrrK serkf NUSG_ECOLI : 172- 180: ratpv Eldfs-QveK a NUSG_HAEIN : 175- 183: ratpv Elefg-QveK ih NUSG_STACA : 173- 181: retpv Evefd-QieK l NUSG_STRCO : 291- 299: retpv Elsfd-QiqK n NUSG_STRGR : 285- 293: retpv Elsfd-QiqK n NUSG_STRVG : 310- 318: retpv Elsfd-QiqK n NUSG_SYNY3 : 195- 203: retpv Eleft-QveK qn NUSG_THEMA : 321- 330: agvik EidperQelK vnvti NUSG_THETH : 175- 183: retpv Eldfs-QvvK a T 20: 12.0102 14( 11) V-x(2,3)-G-x(4)-V Occurences: 14(11) NUSG_BACSU : 158- 167: kvkvf VnmfGretpV eleft NUSG_CGDAB : 50- 59: rvhve VvifGrvtpV elayn NUSG_CGDAB : 51- 59: vhvev Vif-GrvtpV elayn NUSG_ECOLI : 162- 171: rlkvs VsifGratpV eldfs NUSG_HAEIN : 165- 174: rlkvs VsmfGratpV elefg NUSG_STACA : 163- 172: kltvl VdmfGretpV evefd NUSG_STRCO : 281- 290: kvkgl VeifGretpV elsfd NUSG_STRGR : 275- 284: kvkgl VeifGretpV elsfd NUSG_STRVG : 300- 309: kvkgl VeifGretpV elsfd NUSG_SYNY3 : 28- 36: wfavq Vas-GcekrV klnle NUSG_THEMA : 26- 35: niekk VeatGiknlV grivi NUSG_THEMA : 260- 269: yvmgf VssgGqpvpV kdrem NUSG_THEMA : 333- 342: elkvn VtifGretpV vlhvs NUSG_THETH : 165- 174: kvkvm VtifGretpV eldfs Number of patterns evaluated by Pratt:1082 Total running time: 1 seconds