------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file NOL1_NOP2_FMU PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NOL1_NOP2_FMU.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FMU_COXBU 430 FMU_ECOLI 429 FMU_HAEIN 451 NOL1_HUMAN 855 NOP2_YEAST 618 YBC4_YEAST 684 Pratt run started at Thu Feb 6 20:25:22 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 6( 6) F-D-R-x-L-x-D-x-P-C-S-x(1,3)-T 2: 32.3604 6( 6) K-x(2)-G-x(3)-Y-x-T-C-S-x(3,4)-E-x(0,1)-E 3: 32.3604 6( 6) D-R-x-L-x-D-x-P-C-S-x(1,3)-T 4: 29.1904 6( 6) R-x-L-x-D-x-P-C-S-x(2)-G 5: 28.1904 6( 6) G-x(3)-Y-x-T-C-S-x(3,4)-E-x(0,1)-E 6: 28.1904 6( 6) R-x-L-x-D-x-P-C-S-x(1,3)-T 7: 28.1904 6( 6) R-x(1,2)-L-x(0,1)-D-x-P-C-S-x(2)-G 8: 28.1904 6( 6) R-x(0,1)-L-x(0,1)-D-x-P-C-S-x(2)-G 9: 27.6904 6( 6) K-x(0,2)-G-x(3,4)-Y-x-T-C-S-x(4)-E 10: 25.0203 6( 6) D-x(3)-A-P-G-x-K-T 11: 25.0203 6( 6) L-x(4)-A-P-G-x-K-T 12: 24.5203 6( 6) R-I-L-x(0,1)-D-x(2)-C-x(3)-G 13: 24.0203 6( 6) Y-x-T-C-S-x(3,4)-E-x(0,1)-E 14: 24.0203 10( 6) G-x(3,4)-Y-x-T-C-S-x(3,4)-E 15: 24.0203 6( 6) L-x-D-x-P-C-S-x(1,3)-T 16: 24.0203 7( 6) L-x(2,4)-A-P-G-x-K-T 17: 24.0203 6( 6) D-x(2,3)-A-x(0,1)-P-G-x-K-T 18: 24.0203 6( 6) L-x(3,4)-A-x(0,1)-P-G-x-K-T 19: 23.5203 7( 6) L-D-x(0,2)-A-x(0,1)-P-x-S-x-T 20: 23.5203 7( 6) L-x(2,4)-A-x(0,1)-P-G-x-K-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 53.9136 6( 6) R-x-L-x-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] B 2: 52.9136 6( 6) R-x(1,2)-L-x(0,1)-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] C 3: 52.9136 6( 6) R-x(0,1)-L-x(0,1)-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] D 4: 52.8519 6( 6) K-x-[GN]-G-x-[IL]-[LV]-Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] E 5: 48.7101 6( 6) K-x(0,2)-G-x(3,4)-Y-[ACS]-T-C-S-[ILV]-x-[PV]-x-E-[DN]-x(3)-[IV]-x(3)-L-x(3)-[ADGNP] F 6: 47.1743 6( 6) L-D-x-[AC]-[AC]-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] G 7: 46.0601 6( 6) L-D-x(0,2)-A-x(0,1)-P-[CG]-S-x-T-[AGS]-x-[IL]-x-[EKR]-x(4)-[DK]-x(2)-[EKR]-x-[DEPS]-x(2)-[FIV] H 8: 45.4088 6( 6) G-x-[IL]-[LV]-Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] I 9: 43.0042 6( 6) D-x-[AC]-[AC]-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] J 10: 42.9411 6( 6) F-D-R-[IV]-L-x-D-[AV]-P-C-S-x(1,3)-T K 11: 38.7711 6( 6) D-R-[IV]-L-x-D-[AV]-P-C-S-x(1,3)-T L 12: 36.1637 6( 6) R-I-L-x(0,1)-D-x-[CP]-C-[AS]-[AGP]-[DGT]-G M 13: 35.3682 7( 6) L-x(2,4)-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] N 14: 35.3682 6( 6) D-x(2,3)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] O 15: 35.3682 6( 6) L-x(3,4)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] P 16: 34.8682 7( 6) L-x(2,4)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Q 17: 34.7684 6( 6) Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] R 18: 32.0808 10( 6) G-x(3,4)-Y-[ACS]-T-C-S-x(3,4)-E-[EN]-[DENS] S 19: 31.3762 6( 6) R-x-L-x-D-[AV]-P-C-S-x(1,3)-T T 20: 27.2061 6( 6) L-x-D-[AV]-P-C-S-x(1,3)-T Best patterns with alignements: fitness hits(seqs) Pattern A 1: 53.9136 6( 6) R-x-L-x-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] Occurences: 6(6) FMU_COXBU : 314- 333: gelfd RiLlDAPCSATGVIrRhpDI kllrq FMU_ECOLI : 318- 337: eqqfd RiLlDAPCSATGVIrRhpDI kwlrr FMU_HAEIN : 335- 354: aakfd RiLlDAPCSATGVIrRhpDI kwlrk NOL1_HUMAN : 456- 475: vggfd RvLlDAPCSGTGVIsKdpAV ktnkd NOP2_YEAST : 417- 436: iggfd RiLlDAPCSGTGVIgKdqSV kvsrt YBC4_YEAST : 253- 272: vlkfd RiLcDVPCSGDGTMrKnvNV wkdwn B 2: 52.9136 6( 6) R-x(1,2)-L-x(0,1)-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] Occurences: 6(6) FMU_COXBU : 314- 333: gelfd RilL-DAPCSATGVIrRhpDI kllrq FMU_COXBU : 314- 333: gelfd Ri-LlDAPCSATGVIrRhpDI kllrq FMU_ECOLI : 318- 337: eqqfd RilL-DAPCSATGVIrRhpDI kwlrr FMU_ECOLI : 318- 337: eqqfd Ri-LlDAPCSATGVIrRhpDI kwlrr FMU_HAEIN : 335- 354: aakfd RilL-DAPCSATGVIrRhpDI kwlrk FMU_HAEIN : 335- 354: aakfd Ri-LlDAPCSATGVIrRhpDI kwlrk NOL1_HUMAN : 456- 475: vggfd RvlL-DAPCSGTGVIsKdpAV ktnkd NOL1_HUMAN : 456- 475: vggfd Rv-LlDAPCSGTGVIsKdpAV ktnkd NOP2_YEAST : 417- 436: iggfd RilL-DAPCSGTGVIgKdqSV kvsrt NOP2_YEAST : 417- 436: iggfd Ri-LlDAPCSGTGVIgKdqSV kvsrt YBC4_YEAST : 253- 272: vlkfd Ri-LcDVPCSGDGTMrKnvNV wkdwn C 3: 52.9136 6( 6) R-x(0,1)-L-x(0,1)-D-[AV]-P-C-S-[AG]-[DT]-G-[TV]-[IM]-x-[KR]-x(2)-[ADNS]-[IV] Occurences: 6(6) FMU_COXBU : 314- 333: gelfd RiLlDAPCSATGVIrRhpDI kllrq FMU_ECOLI : 318- 337: eqqfd RiLlDAPCSATGVIrRhpDI kwlrr FMU_HAEIN : 335- 354: aakfd RiLlDAPCSATGVIrRhpDI kwlrk NOL1_HUMAN : 456- 475: vggfd RvLlDAPCSGTGVIsKdpAV ktnkd NOP2_YEAST : 417- 436: iggfd RiLlDAPCSGTGVIgKdqSV kvsrt YBC4_YEAST : 253- 272: vlkfd RiLcDVPCSGDGTMrKnvNV wkdwn D 4: 52.8519 6( 6) K-x-[GN]-G-x-[IL]-[LV]-Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] Occurences: 6(6) FMU_COXBU : 361- 386: lwtvl KaGGfLLYSTCSvlpdEnEkViEefL sthdk FMU_ECOLI : 365- 388: iwphl KtGGtLVYATCSvlp-E-EnSlQikA flqrt FMU_HAEIN : 382- 405: lwekl KpNGvLLYATCSvlp-E-EnCeQiqA flnah NOL1_HUMAN : 507- 532: vnats KtGGyLVYCTCSitveEnEwVvDyaL kkrnv NOP2_YEAST : 468- 493: vdcns KhGGvIVYSTCSvaveEdEaViDyaL rkrpn YBC4_YEAST : 300- 325: glhll KnNGrLVYSTCSlnpiEnEaVvAeaL rkwgd E 5: 48.7101 6( 6) K-x(0,2)-G-x(3,4)-Y-[ACS]-T-C-S-[ILV]-x-[PV]-x-E-[DN]-x(3)-[IV]-x(3)-L-x(3)-[ADGNP] Occurences: 6(6) FMU_COXBU : 361- 390: lwtvl KagGfll-YSTCSVlPdENekvIeefLsthD kvels FMU_COXBU : 361- 390: lwtvl Ka-GgfllYSTCSVlPdENekvIeefLsthD kvels FMU_ECOLI : 365- 394: iwphl KtgGtlv-YATCSVlPeENslqIkafLqrtA daelc FMU_ECOLI : 365- 394: iwphl Kt-GgtlvYATCSVlPeENslqIkafLqrtA daelc FMU_HAEIN : 382- 411: lwekl KpnGvll-YATCSVlPeENceqIqafLnahA daell NOL1_HUMAN : 507- 536: vnats KtgGylv-YCTCSItVeENewvVdyaLkkrN vrlvp NOL1_HUMAN : 507- 536: vnats Kt-GgylvYCTCSItVeENewvVdyaLkkrN vrlvp NOP2_YEAST : 468- 497: vdcns KhgGviv-YSTCSVaVeEDeavIdyaLrkrP nvklv NOP2_YEAST : 468- 497: vdcns Kh-GgvivYSTCSVaVeEDeavIdyaLrkrP nvklv YBC4_YEAST : 300- 329: glhll KnnGrlv-YSTCSLnPiENeavVaeaLrkwG dkirl F 6: 47.1743 6( 6) L-D-x-[AC]-[AC]-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 6(6) FMU_COXBU : 243- 258: nnqtv LDaCAAPGSKTShIlE vnphl FMU_ECOLI : 251- 266: ngehi LDlCAAPGGKTThIlE vapea FMU_HAEIN : 263- 278: neewi LDaCAAPGGKTThIlE lapqa NOL1_HUMAN : 389- 404: eheri LDmCCAPGGKTSyMaQ lmknt NOP2_YEAST : 350- 365: eneri LDmAAAPGGKTTyIsA mmknt YBC4_YEAST : 170- 185: phhtv LDmCAAPGSKTAqLiE alhkd G 7: 46.0601 6( 6) L-D-x(0,2)-A-x(0,1)-P-[CG]-S-x-T-[AGS]-x-[IL]-x-[EKR]-x(4)-[DK]-x(2)-[EKR]-x-[DEPS]-x(2)-[FIV] Occurences: 6(6) FMU_COXBU : 317- 342: fdril LD--A-PCSaTGvIrRhpdiKllRqPgdI sqyhq FMU_ECOLI : 321- 346: fdril LD--A-PCSaTGvIrRhpdiKwlRrDrdI pelaq FMU_HAEIN : 338- 363: fdril LD--A-PCSaTGvIrRhpdiKwlRkEtdI aqlve NOL1_HUMAN : 459- 484: fdrvl LD--A-PCSgTGvIsKdpavKtnKdEkdI lrcah NOP2_YEAST : 420- 445: fdril LD--A-PCSgTGvIgKdqsvKvsRtEkdF iqiph YBC4_YEAST : 170- 198: phhtv LDmcAaPGSkTAqLiEalhkDtdEpSgfV vanda H 8: 45.4088 6( 6) G-x-[IL]-[LV]-Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] Occurences: 6(6) FMU_COXBU : 364- 386: vlkag GfLLYSTCSvlpdEnEkViEefL sthdk FMU_ECOLI : 368- 388: hlktg GtLVYATCSvlp-E-EnSlQikA flqrt FMU_HAEIN : 385- 405: klkpn GvLLYATCSvlp-E-EnCeQiqA flnah NOL1_HUMAN : 510- 532: tsktg GyLVYCTCSitveEnEwVvDyaL kkrnv NOP2_YEAST : 471- 493: nskhg GvIVYSTCSvaveEdEaViDyaL rkrpn YBC4_YEAST : 303- 325: llknn GrLVYSTCSlnpiEnEaVvAeaL rkwgd I 9: 43.0042 6( 6) D-x-[AC]-[AC]-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 6(6) FMU_COXBU : 244- 258: nqtvl DaCAAPGSKTShIlE vnphl FMU_ECOLI : 252- 266: gehil DlCAAPGGKTThIlE vapea FMU_HAEIN : 264- 278: eewil DaCAAPGGKTThIlE lapqa NOL1_HUMAN : 390- 404: heril DmCCAPGGKTSyMaQ lmknt NOP2_YEAST : 351- 365: neril DmAAAPGGKTTyIsA mmknt YBC4_YEAST : 171- 185: hhtvl DmCAAPGSKTAqLiE alhkd J 10: 42.9411 6( 6) F-D-R-[IV]-L-x-D-[AV]-P-C-S-x(1,3)-T Occurences: 6(6) FMU_COXBU : 312- 324: ssgel FDRILlDAPCSa--T gvirr FMU_ECOLI : 316- 328: cgeqq FDRILlDAPCSa--T gvirr FMU_HAEIN : 333- 345: ksaak FDRILlDAPCSa--T gvirr NOL1_HUMAN : 454- 466: kvvgg FDRVLlDAPCSg--T gvisk NOP2_YEAST : 415- 427: kvigg FDRILlDAPCSg--T gvigk YBC4_YEAST : 251- 265: ndvlk FDRILcDVPCSgdgT mrknv K 11: 38.7711 6( 6) D-R-[IV]-L-x-D-[AV]-P-C-S-x(1,3)-T Occurences: 6(6) FMU_COXBU : 313- 324: sgelf DRILlDAPCSa--T gvirr FMU_ECOLI : 317- 328: geqqf DRILlDAPCSa--T gvirr FMU_HAEIN : 334- 345: saakf DRILlDAPCSa--T gvirr NOL1_HUMAN : 455- 466: vvggf DRVLlDAPCSg--T gvisk NOP2_YEAST : 416- 427: viggf DRILlDAPCSg--T gvigk YBC4_YEAST : 252- 265: dvlkf DRILcDVPCSgdgT mrknv L 12: 36.1637 6( 6) R-I-L-x(0,1)-D-x-[CP]-C-[AS]-[AGP]-[DGT]-G Occurences: 6(6) FMU_COXBU : 314- 325: gelfd RILlDaPCSATG virrh FMU_ECOLI : 318- 329: eqqfd RILlDaPCSATG virrh FMU_HAEIN : 335- 346: aakfd RILlDaPCSATG virrh NOL1_HUMAN : 387- 397: pqehe RIL-DmCCAPGG ktsym NOP2_YEAST : 417- 428: iggfd RILlDaPCSGTG vigkd YBC4_YEAST : 253- 264: vlkfd RILcDvPCSGDG tmrkn M 13: 35.3682 7( 6) L-x(2,4)-A-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 7(6) FMU_COXBU : 243- 258: nnqtv LdacaAPGSKTShIlE vnphl FMU_ECOLI : 251- 266: ngehi LdlcaAPGGKTThIlE vapea FMU_ECOLI : 253- 266: ehild Lca--APGGKTThIlE vapea FMU_HAEIN : 263- 278: neewi LdacaAPGGKTThIlE lapqa NOL1_HUMAN : 389- 404: eheri LdmccAPGGKTSyMaQ lmknt NOP2_YEAST : 350- 365: eneri LdmaaAPGGKTTyIsA mmknt YBC4_YEAST : 170- 185: phhtv LdmcaAPGSKTAqLiE alhkd N 14: 35.3682 6( 6) D-x(2,3)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 6(6) FMU_COXBU : 244- 258: nqtvl DacaA-PGSKTShIlE vnphl FMU_COXBU : 244- 258: nqtvl Dac-AaPGSKTShIlE vnphl FMU_ECOLI : 252- 266: gehil DlcaA-PGGKTThIlE vapea FMU_ECOLI : 252- 266: gehil Dlc-AaPGGKTThIlE vapea FMU_HAEIN : 264- 278: eewil DacaA-PGGKTThIlE lapqa FMU_HAEIN : 264- 278: eewil Dac-AaPGGKTThIlE lapqa NOL1_HUMAN : 390- 404: heril DmccA-PGGKTSyMaQ lmknt NOP2_YEAST : 351- 365: neril DmaaA-PGGKTTyIsA mmknt NOP2_YEAST : 351- 365: neril Dma-AaPGGKTTyIsA mmknt YBC4_YEAST : 171- 185: hhtvl DmcaA-PGSKTAqLiE alhkd YBC4_YEAST : 171- 185: hhtvl Dmc-AaPGSKTAqLiE alhkd O 15: 35.3682 6( 6) L-x(3,4)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 6(6) FMU_COXBU : 243- 258: nnqtv LdacaA-PGSKTShIlE vnphl FMU_COXBU : 243- 258: nnqtv Ldac-AaPGSKTShIlE vnphl FMU_ECOLI : 251- 266: ngehi LdlcaA-PGGKTThIlE vapea FMU_ECOLI : 251- 266: ngehi Ldlc-AaPGGKTThIlE vapea FMU_HAEIN : 263- 278: neewi LdacaA-PGGKTThIlE lapqa FMU_HAEIN : 263- 278: neewi Ldac-AaPGGKTThIlE lapqa NOL1_HUMAN : 389- 404: eheri LdmccA-PGGKTSyMaQ lmknt NOP2_YEAST : 350- 365: eneri LdmaaA-PGGKTTyIsA mmknt NOP2_YEAST : 350- 365: eneri Ldma-AaPGGKTTyIsA mmknt YBC4_YEAST : 170- 185: phhtv LdmcaA-PGSKTAqLiE alhkd YBC4_YEAST : 170- 185: phhtv Ldmc-AaPGSKTAqLiE alhkd P 16: 34.8682 7( 6) L-x(2,4)-A-x(0,1)-P-G-[GS]-K-T-[AST]-x-[ILM]-x-[AEQ] Occurences: 7(6) FMU_COXBU : 243- 258: nnqtv LdacaA-PGSKTShIlE vnphl FMU_COXBU : 243- 258: nnqtv Ldac-AaPGSKTShIlE vnphl FMU_ECOLI : 251- 266: ngehi LdlcaA-PGGKTThIlE vapea FMU_ECOLI : 251- 266: ngehi Ldlc-AaPGGKTThIlE vapea FMU_ECOLI : 253- 266: ehild Lca--A-PGGKTThIlE vapea FMU_HAEIN : 263- 278: neewi LdacaA-PGGKTThIlE lapqa FMU_HAEIN : 263- 278: neewi Ldac-AaPGGKTThIlE lapqa NOL1_HUMAN : 389- 404: eheri LdmccA-PGGKTSyMaQ lmknt NOP2_YEAST : 350- 365: eneri LdmaaA-PGGKTTyIsA mmknt NOP2_YEAST : 350- 365: eneri Ldma-AaPGGKTTyIsA mmknt YBC4_YEAST : 170- 185: phhtv LdmcaA-PGSKTAqLiE alhkd YBC4_YEAST : 170- 185: phhtv Ldmc-AaPGSKTAqLiE alhkd Q 17: 34.7684 6( 6) Y-[ACS]-T-C-S-x(3,4)-E-x(0,1)-E-x-[CSV]-x-[ADEQ]-x(2)-[AL] Occurences: 6(6) FMU_COXBU : 368- 386: ggfll YSTCSvlpdEnEkViEefL sthdk FMU_ECOLI : 372- 388: ggtlv YATCSvlp-E-EnSlQikA flqrt FMU_HAEIN : 389- 405: ngvll YATCSvlp-E-EnCeQiqA flnah NOL1_HUMAN : 514- 532: ggylv YCTCSitveEnEwVvDyaL kkrnv NOP2_YEAST : 475- 493: ggviv YSTCSvaveEdEaViDyaL rkrpn YBC4_YEAST : 307- 325: ngrlv YSTCSlnpiEnEaVvAeaL rkwgd R 18: 32.0808 10( 6) G-x(3,4)-Y-[ACS]-T-C-S-x(3,4)-E-[EN]-[DENS] Occurences: 10(6) FMU_COXBU : 363- 379: tvlka GgfllYSTCSvlpdENE kviee FMU_COXBU : 364- 379: vlkag Gfll-YSTCSvlpdENE kviee FMU_ECOLI : 367- 382: phlkt GgtlvYATCSvlp-EEN slqik FMU_ECOLI : 367- 383: phlkt GgtlvYATCSvlpeENS lqika FMU_ECOLI : 368- 382: hlktg Gtlv-YATCSvlp-EEN slqik FMU_ECOLI : 368- 383: hlktg Gtlv-YATCSvlpeENS lqika FMU_HAEIN : 385- 399: klkpn Gvll-YATCSvlp-EEN ceqiq NOL1_HUMAN : 509- 524: atskt GgylvYCTCSitv-EEN ewvvd NOL1_HUMAN : 509- 525: atskt GgylvYCTCSitveENE wvvdy NOL1_HUMAN : 510- 524: tsktg Gylv-YCTCSitv-EEN ewvvd NOL1_HUMAN : 510- 525: tsktg Gylv-YCTCSitveENE wvvdy NOP2_YEAST : 470- 485: cnskh GgvivYSTCSvav-EED eavid NOP2_YEAST : 471- 485: nskhg Gviv-YSTCSvav-EED eavid YBC4_YEAST : 303- 318: llknn Grlv-YSTCSlnpiENE avvae S 19: 31.3762 6( 6) R-x-L-x-D-[AV]-P-C-S-x(1,3)-T Occurences: 6(6) FMU_COXBU : 314- 324: gelfd RiLlDAPCSa--T gvirr FMU_ECOLI : 318- 328: eqqfd RiLlDAPCSa--T gvirr FMU_HAEIN : 335- 345: aakfd RiLlDAPCSa--T gvirr NOL1_HUMAN : 456- 466: vggfd RvLlDAPCSg--T gvisk NOP2_YEAST : 417- 427: iggfd RiLlDAPCSg--T gvigk YBC4_YEAST : 253- 265: vlkfd RiLcDVPCSgdgT mrknv T 20: 27.2061 6( 6) L-x-D-[AV]-P-C-S-x(1,3)-T Occurences: 6(6) FMU_COXBU : 316- 324: lfdri LlDAPCSa--T gvirr FMU_ECOLI : 320- 328: qfdri LlDAPCSa--T gvirr FMU_HAEIN : 337- 345: kfdri LlDAPCSa--T gvirr NOL1_HUMAN : 458- 466: gfdrv LlDAPCSg--T gvisk NOP2_YEAST : 419- 427: gfdri LlDAPCSg--T gvigk YBC4_YEAST : 255- 265: kfdri LcDVPCSgdgT mrknv Number of patterns evaluated by Pratt:18653 Total running time: 11 seconds