------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file NNMT_PNMT_TEMT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NNMT_PNMT_TEMT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NNMT_HUMAN 264 PNMT_BOVIN 283 PNMT_HUMAN 282 PNMT_MOUSE 295 PNMT_RAT 270 TSMT_MOUSE 264 Pratt run started at Thu Feb 6 20:25:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 132.4416 6( 6) L-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 2: 128.2716 6( 6) I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 3: 128.2716 6( 6) G-x(2)-L-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A 4: 124.6015 7( 6) G-x(0,1)-V-x-G-x(2)-L-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E 5: 124.1015 6( 6) D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 6: 124.1015 6( 6) V-x(4)-L-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P 7: 124.1015 6( 6) F-x(2,3)-G-x(0,1)-V-x-G-x(2)-L-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L 8: 119.9315 6( 6) I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 9: 119.9315 7( 6) L-x(0,2)-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W 10: 119.9315 6( 6) V-x(3,4)-L-x(0,1)-I-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P 11: 116.2614 7( 6) L-x(1,2)-D-I-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A 12: 115.7614 6( 6) G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 13: 111.5914 6( 6) S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 14: 110.5914 7( 6) L-x(1,3)-I-x(0,2)-G-S-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A 15: 108.4213 6( 6) D-I-x(2)-G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W 16: 107.4213 6( 6) G-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 17: 106.9213 7( 6) L-x(1,2)-I-x(2)-G-x(0,2)-P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(2)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W 18: 103.2513 6( 6) P-T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 19: 99.0812 6( 6) T-x-Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S 20: 94.9112 6( 6) Y-Q-L-L-S-A-C-x(2)-F-x(0,1)-E-x(0,1)-I-x(2)-T-D-x(4)-N-x-Q-E-L-x(2)-W-L-x(2)-E-P-x-A-x(2)-W-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 160.3349 6( 6) L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S B 2: 156.1648 6( 6) I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S C 3: 153.6422 7( 6) L-x(0,2)-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W D 4: 152.3967 6( 6) G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A E 5: 151.9948 6( 6) D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S F 6: 151.3155 7( 6) G-x(0,1)-V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E G 7: 150.4722 6( 6) D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W H 8: 149.9722 6( 6) L-x(1,2)-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W I 9: 149.1681 6( 6) V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P J 10: 147.8248 6( 6) I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S K 11: 147.6042 6( 6) F-x(2,3)-G-x(0,1)-V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L L 12: 146.8257 6( 6) G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV] M 13: 146.7982 7( 6) L-x(1,2)-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY] N 14: 145.8576 6( 6) S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT] O 15: 144.8600 6( 6) G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY] P 16: 144.0551 6( 6) V-x(3,4)-L-x(0,1)-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P Q 17: 143.8758 6( 6) P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV] R 18: 143.8758 6( 6) T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV]-C S 19: 141.1281 7( 6) L-x(1,3)-I-x(0,2)-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY] T 20: 139.7675 6( 6) Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV]-C-x-[IL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 160.3349 6( 6) L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S Occurences: 6(6) NNMT_HUMAN : 59- 108: vkgdl LIDIGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWS pvvty PNMT_BOVIN : 75- 124: vsgrt LIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWS vysqh PNMT_HUMAN : 75- 124: vsgrt LIDIGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWS mysqh PNMT_MOUSE : 86- 135: vsgrv LIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh PNMT_RAT : 61- 110: vsgqv LIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh TSMT_MOUSE : 60- 109: vggdv LIDIGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWS sivqh B 2: 156.1648 6( 6) I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S Occurences: 6(6) NNMT_HUMAN : 60- 108: kgdll IDIGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWS pvvty PNMT_BOVIN : 76- 124: sgrtl IDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWS vysqh PNMT_HUMAN : 76- 124: sgrtl IDIGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWS mysqh PNMT_MOUSE : 87- 135: sgrvl IDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh PNMT_RAT : 62- 110: sgqvl IDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh TSMT_MOUSE : 61- 109: ggdvl IDIGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWS sivqh C 3: 153.6422 7( 6) L-x(0,2)-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W Occurences: 7(6) NNMT_HUMAN : 58- 107: gvkgd LliDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAFDW spvvt NNMT_HUMAN : 59- 107: vkgdl Li-DIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAFDW spvvt PNMT_BOVIN : 75- 123: vsgrt Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEPGAFDW svysq PNMT_HUMAN : 75- 123: vsgrt Li-DIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEPGAFNW smysq PNMT_MOUSE : 86- 134: vsgrv Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq PNMT_RAT : 61- 109: vsgqv Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq TSMT_MOUSE : 60- 108: vggdv Li-DIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEPGAYDW ssivq D 4: 152.3967 6( 6) G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A Occurences: 6(6) NNMT_HUMAN : 56- 104: ldgvk GDlLIDIGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEA fdwsp PNMT_BOVIN : 72- 120: tgevs GRtLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGA fdwsv PNMT_HUMAN : 72- 120: tgevs GRtLIDIGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGA fnwsm PNMT_MOUSE : 83- 131: tgevs GRvLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGA fdwsv PNMT_RAT : 58- 106: tgevs GQvLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGA fdwsv TSMT_MOUSE : 57- 105: tggvg GDvLIDIGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGA ydwss E 5: 151.9948 6( 6) D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S Occurences: 6(6) NNMT_HUMAN : 61- 108: gdlli DIGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWS pvvty PNMT_BOVIN : 77- 124: grtli DIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWS vysqh PNMT_HUMAN : 77- 124: grtli DIGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWS mysqh PNMT_MOUSE : 88- 135: grvli DIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh PNMT_RAT : 63- 110: gqvli DIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh TSMT_MOUSE : 62- 109: gdvli DIGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWS sivqh F 6: 151.3155 7( 6) G-x(0,1)-V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E Occurences: 7(6) NNMT_HUMAN : 53- 101: ifcld G-VkGDlLIDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKE peafd PNMT_BOVIN : 68- 117: qtfat GeVsGRtLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEE pgafd PNMT_HUMAN : 68- 117: qtfat GeVsGRtLIDIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEE pgafn PNMT_MOUSE : 79- 128: qvfat GeVsGRvLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEE pgafd PNMT_RAT : 54- 103: qvfat GeVsGQvLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEE pgafd TSMT_MOUSE : 53- 102: qtfst GgVgGDvLIDIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKE pgayd TSMT_MOUSE : 54- 102: tfstg G-VgGDvLIDIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKE pgayd G 7: 150.4722 6( 6) D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W Occurences: 6(6) NNMT_HUMAN : 61- 107: gdlli DIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAFDW spvvt PNMT_BOVIN : 77- 123: grtli DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEPGAFDW svysq PNMT_HUMAN : 77- 123: grtli DIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEPGAFNW smysq PNMT_MOUSE : 88- 134: grvli DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq PNMT_RAT : 63- 109: gqvli DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq TSMT_MOUSE : 62- 108: gdvli DIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEPGAYDW ssivq H 8: 149.9722 6( 6) L-x(1,2)-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W Occurences: 6(6) NNMT_HUMAN : 59- 107: vkgdl LidIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAFDW spvvt PNMT_BOVIN : 75- 123: vsgrt LidIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEPGAFDW svysq PNMT_HUMAN : 75- 123: vsgrt LidIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEPGAFNW smysq PNMT_MOUSE : 86- 134: vsgrv LidIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq PNMT_RAT : 61- 109: vsgqv LidIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAFDW svysq TSMT_MOUSE : 60- 108: vggdv LidIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEPGAYDW ssivq I 9: 149.1681 6( 6) V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P Occurences: 6(6) NNMT_HUMAN : 54- 102: fcldg VkGDlLIDIGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEP eafdw PNMT_BOVIN : 70- 118: fatge VsGRtLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEP gafdw PNMT_HUMAN : 70- 118: fatge VsGRtLIDIGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEP gafnw PNMT_MOUSE : 81- 129: fatge VsGRvLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEP gafdw PNMT_RAT : 56- 104: fatge VsGQvLIDIGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEP gafdw TSMT_MOUSE : 55- 103: fstgg VgGDvLIDIGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEP gaydw J 10: 147.8248 6( 6) I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S Occurences: 6(6) NNMT_HUMAN : 62- 108: dllid IGSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWS pvvty PNMT_BOVIN : 78- 124: rtlid IGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWS vysqh PNMT_HUMAN : 78- 124: rtlid IGSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWS mysqh PNMT_MOUSE : 89- 135: rvlid IGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh PNMT_RAT : 64- 110: qvlid IGSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWS vysqh TSMT_MOUSE : 63- 109: dvlid IGSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWS sivqh K 11: 147.6042 6( 6) F-x(2,3)-G-x(0,1)-V-x-G-[DQR]-x-L-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L Occurences: 6(6) NNMT_HUMAN : 49- 98: nlfki FcldG-VkGDlLIDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWL kkepe PNMT_BOVIN : 65- 114: claqt Fat-GeVsGRtLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWL reepg PNMT_HUMAN : 65- 114: claqt Fat-GeVsGRtLIDIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWL qeepg PNMT_MOUSE : 76- 125: cmaqv Fat-GeVsGRvLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWL reepg PNMT_RAT : 51- 100: cmaqv Fat-GeVsGQvLIDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWL reepg TSMT_MOUSE : 50- 99: nlyqt FstgG-VgGDvLIDIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWL kkepg TSMT_MOUSE : 50- 99: nlyqt Fst-GgVgGDvLIDIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWL kkepg L 12: 146.8257 6( 6) G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV] Occurences: 6(6) NNMT_HUMAN : 63- 111: llidi GSGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvV tyvcd PNMT_BOVIN : 79- 127: tlidi GSGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvyS qhvcl PNMT_HUMAN : 79- 127: tlidi GSGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmyS qhacl PNMT_MOUSE : 90- 138: vlidi GSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvyS qhacl PNMT_RAT : 65- 113: vlidi GSGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvyS qhvcl TSMT_MOUSE : 64- 112: vlidi GSGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiV qhace M 13: 146.7982 7( 6) L-x(1,2)-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY] Occurences: 7(6) NNMT_HUMAN : 58- 105: gvkgd LliDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAF dwspv NNMT_HUMAN : 59- 105: vkgdl Li-DIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAF dwspv PNMT_BOVIN : 75- 121: vsgrt Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEPGAF dwsvy PNMT_HUMAN : 75- 121: vsgrt Li-DIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEPGAF nwsmy PNMT_MOUSE : 86- 132: vsgrv Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAF dwsvy PNMT_RAT : 61- 107: vsgqv Li-DIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAF dwsvy TSMT_MOUSE : 60- 106: vggdv Li-DIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEPGAY dwssi N 14: 145.8576 6( 6) S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT] Occurences: 6(6) NNMT_HUMAN : 64- 112: lidig SGPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvVT yvcdl PNMT_BOVIN : 80- 128: lidig SGPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvySQ hvcli PNMT_HUMAN : 80- 128: lidig SGPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmySQ hacli PNMT_MOUSE : 91- 139: lidig SGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQ hacli PNMT_RAT : 66- 114: lidig SGPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQ hvcli TSMT_MOUSE : 65- 113: lidig SGPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiVQ hacel O 15: 144.8600 6( 6) G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY] Occurences: 6(6) NNMT_HUMAN : 65- 113: idigs GPTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvVTY vcdle PNMT_BOVIN : 81- 129: idigs GPTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvySQH vclie PNMT_HUMAN : 81- 129: idigs GPTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmySQH aclie PNMT_MOUSE : 92- 140: idigs GPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQH aclie PNMT_RAT : 67- 115: idigs GPTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQH vclie TSMT_MOUSE : 66- 114: idigs GPTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiVQH acele P 16: 144.0551 6( 6) V-x(3,4)-L-x(0,1)-I-D-I-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P Occurences: 6(6) NNMT_HUMAN : 54- 102: fcldg VkgdlL-IDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEP eafdw NNMT_HUMAN : 54- 102: fcldg Vkgd-LlIDIGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEP eafdw PNMT_BOVIN : 70- 118: fatge VsgrtL-IDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEP gafdw PNMT_HUMAN : 70- 118: fatge VsgrtL-IDIGSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEP gafnw PNMT_MOUSE : 81- 129: fatge VsgrvL-IDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEP gafdw PNMT_RAT : 56- 104: fatge VsgqvL-IDIGSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEP gafdw TSMT_MOUSE : 55- 103: fstgg VggdvL-IDIGSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEP gaydw Q 17: 143.8758 6( 6) P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV] Occurences: 6(6) NNMT_HUMAN : 66- 114: digsg PTIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvVTYV cdleg PNMT_BOVIN : 82- 130: digsg PTIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvySQHV clieg PNMT_HUMAN : 82- 130: digsg PTVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmySQHA clieg PNMT_MOUSE : 93- 141: digsg PTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHA clied PNMT_RAT : 68- 116: digsg PTIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHV clied TSMT_MOUSE : 67- 115: digsg PTIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiVQHA celeg R 18: 143.8758 6( 6) T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV]-C Occurences: 6(6) NNMT_HUMAN : 67- 115: igsgp TIYQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvVTYVC dlegn PNMT_BOVIN : 83- 131: igsgp TIYQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvySQHVC liegk PNMT_HUMAN : 83- 131: igsgp TVYQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmySQHAC liegk PNMT_MOUSE : 94- 142: igsgp TIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHAC liedk PNMT_RAT : 69- 117: igsgp TIYQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHVC liedk TSMT_MOUSE : 68- 116: igsgp TIYQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiVQHAC elegd S 19: 141.1281 7( 6) L-x(1,3)-I-x(0,2)-G-S-G-P-T-[IV]-Y-Q-L-L-S-A-C-[AES]-x-F-[EKR]-[DE]-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY] Occurences: 7(6) NNMT_HUMAN : 58- 105: gvkgd LlidI--GSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAF dwspv NNMT_HUMAN : 58- 105: gvkgd Ll--IdiGSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAF dwspv NNMT_HUMAN : 59- 105: vkgdl Lid-I--GSGPTIYQLLSACEsFKEIvVTDYsDqNlQELekWLkKEPEAF dwspv PNMT_BOVIN : 75- 121: vsgrt Lid-I--GSGPTIYQLLSACAhFEDItMTDFlEvNrQELrlWLrEEPGAF dwsvy PNMT_HUMAN : 75- 121: vsgrt Lid-I--GSGPTVYQLLSACShFEDItMTDFlEvNrQELgrWLqEEPGAF nwsmy PNMT_MOUSE : 86- 132: vsgrv Lid-I--GSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAF dwsvy PNMT_RAT : 61- 107: vsgqv Lid-I--GSGPTIYQLLSACAhFEDItMTDFlEvNrQELglWLrEEPGAF dwsvy TSMT_MOUSE : 60- 106: vggdv Lid-I--GSGPTIYQLLSACEvFREIiVTDYtPqNlQELqkWLkKEPGAY dwssi T 20: 139.7675 6( 6) Y-Q-L-L-S-A-C-[AES]-x-F-x(0,1)-E-x(0,1)-I-x-[MV]-T-D-[FY]-x-[DEP]-x-N-x-Q-E-L-x(2)-W-L-x-[EK]-E-P-[EG]-A-[FY]-[DN]-W-S-x(2)-[SV]-[QT]-[HY]-[AV]-C-x-[IL] Occurences: 6(6) NNMT_HUMAN : 69- 117: sgpti YQLLSACEsFkE-IvVTDYsDqNlQELekWLkKEPEAFDWSpvVTYVCdL egnrv PNMT_BOVIN : 85- 133: sgpti YQLLSACAhF-EdItMTDFlEvNrQELrlWLrEEPGAFDWSvySQHVClI egkge PNMT_HUMAN : 85- 133: sgptv YQLLSACShF-EdItMTDFlEvNrQELgrWLqEEPGAFNWSmySQHAClI egkge PNMT_MOUSE : 96- 144: sgpti YQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHAClI edkge PNMT_RAT : 71- 119: sgpti YQLLSACAhF-EdItMTDFlEvNrQELglWLrEEPGAFDWSvySQHVClI edkge TSMT_MOUSE : 70- 118: sgpti YQLLSACEvFrE-IiVTDYtPqNlQELqkWLkKEPGAYDWSsiVQHACeL egdrs Number of patterns evaluated by Pratt:17754 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